|
Name |
Accession |
Description |
Interval |
E-value |
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
639-1091 |
7.75e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 63.62 E-value: 7.75e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 639 QQNQELKEAEEKLRSTNQDLCNQMRQMVQEfdHDKQEAVDRCERTYQQHHEAMKAQIRESLLAKHAAEKQHLSEVYEGTQ 718
Cdd:PTZ00121 1284 KKAEEKKKADEAKKAEEKKKADEAKKKAEE--AKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEA 1361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 719 SQLRSDLDKLNKEVAAVQECYL----EVCREKDELESTLRKTMEKAQEQTRQLLEDREEHVRKLKLElEERYQETLKAEK 794
Cdd:PTZ00121 1362 AEEKAEAAEKKKEEAKKKADAAkkkaEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAE-EKKKADEAKKKA 1440
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 795 QSWLKAQAAGATQVEHESRQKLIQQLEEEWQSKLNHSLPARRKATSDCGSQTDQAAYPA--AMPNAEALVLAEE--QAHQ 870
Cdd:PTZ00121 1441 EEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKAdeAKKAAEAKKKADEakKAEE 1520
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 871 VQQEKELTVKEALRKSEvelELKYCESI--AQKVETA--VQNARSRWILELPMLAEYKALLRAQQQEWAKQQEVAVAHRL 946
Cdd:PTZ00121 1521 AKKADEAKKAEEAKKAD---EAKKAEEKkkADELKKAeeLKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEV 1597
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 947 SLALSEAKEKWKSELQNMKPNVASVQELEEKIHSLQKELELKDEEVPVAVRAELAKARNEWNKEKQEEIHKIQEQNE--- 1023
Cdd:PTZ00121 1598 MKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKkka 1677
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958766060 1024 EDYRQFLEDHRNKINEVLTAAKEdfvKQKTELLLQKETEFQACLDQSRKEWTLQEAQRTQLEVHRYEE 1091
Cdd:PTZ00121 1678 EEAKKAEEDEKKAAEALKKEAEE---AKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEED 1742
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
624-1107 |
1.67e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 62.26 E-value: 1.67e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 624 REDILRLKNEVEVLQQQNQELKEAEEKLRSTNQDLCNQMRQMVQEFDHDKQEAVDRCERTYQQHHEAMKAQIRESLLAKH 703
Cdd:COG1196 259 EAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEE 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 704 AAEKQHLSEVYEGTQSQLRSDLDKLNKEVAAVQECYLEVCREKDELESTLRkTMEKAQEQTRQLLEDREEHVRKLKLELE 783
Cdd:COG1196 339 LEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELL-EALRAAAELAAQLEELEEAEEALLERLE 417
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 784 ERYQETLKAEKQSWLKAQAAGATQVEHESRQKLIQQLEEEwQSKLNHSLPARRKATSDCGSQTDQAAYPAAmpNAEALVL 863
Cdd:COG1196 418 RLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEE-EEALLELLAELLEEAALLEAALAELLEELA--EAAARLL 494
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 864 AEEQAHQVQQEKELTVKEALRKSE---VELELKYCESIAQKVETAVQNARSRWILELPMLAEYKAllrAQQQEWAKQQEV 940
Cdd:COG1196 495 LLLEAEADYEGFLEGVKAALLLAGlrgLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVA---AAAIEYLKAAKA 571
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 941 AVAHRLSLALSEAKEKWKSELQNMKPNVASVQELEEKIHSLQKELELKDEEVPVAVRAELAKARNEWNKEKQEEIHKIQE 1020
Cdd:COG1196 572 GRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTL 651
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 1021 QNEEDY-RQFLEDHRNKINEVLTAAKEDFVKQKTELLLQKETEFQACLDQSRKEWTLQEAQRTQLEVHRYEEDILTVLDF 1099
Cdd:COG1196 652 EGEGGSaGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLE 731
|
....*...
gi 1958766060 1100 LLRDTQLE 1107
Cdd:COG1196 732 AEREELLE 739
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
744-1092 |
1.18e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 49.97 E-value: 1.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 744 REKDELESTLRKTMEKAQEQTRQLLEDREEHVRKLKLELEERyqETLKAEKQSWLKAQAAGATQVEHEsrQKLIQQLEEE 823
Cdd:pfam02463 166 RLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAK--KALEYYQLKEKLELEEEYLLYLDY--LKLNEERIDL 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 824 WQSKLNHSLparrkatsdcgsqtdqaaypaampNAEALVLAEEQAHQ--VQQEKELTVKEALRKSEVELELKYCESIAQK 901
Cdd:pfam02463 242 LQELLRDEQ------------------------EEIESSKQEIEKEEekLAQVLKENKEEEKEKKLQEEELKLLAKEEEE 297
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 902 VETAVQNARSRWILELPMLAEYKALLRAQQQEWAKQQEVAVAHRLSLALSEAKekwKSELQNMKPNVASVQELEEKIHSL 981
Cdd:pfam02463 298 LKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIK---REAEEEEEEELEKLQEKLEQLEEE 374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 982 QKELELKDEEVPVAVRAELAKARNEWNKEKQE--EIHKIQEQNEEDYR---QFLEDHRNKINEVLTAAKEDFVKQKTELL 1056
Cdd:pfam02463 375 LLAKKKLESERLSSAAKLKEEELELKSEEEKEaqLLLELARQLEDLLKeekKEELEILEEEEESIELKQGKLTEEKEELE 454
|
330 340 350
....*....|....*....|....*....|....*.
gi 1958766060 1057 LQKETEFQACLDQSRKEWTLQEAQRTQLEVHRYEED 1092
Cdd:pfam02463 455 KQELKLLKDELELKKSEDLLKETQLVKLQEQLELLL 490
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
236-986 |
1.28e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 49.67 E-value: 1.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 236 KERQLDSLVEKLNDRERQIRYLNHQLLIVQDEKDGLALSLRESQKLFQSGKEREMQLEAQIHALETQIEAFKVSEEKLTK 315
Cdd:TIGR02168 300 LEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEE 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 316 KLRT-------TEITLESLKQQLVELH-HSESLQRAREQHESVVAGLTQKYEE-QVSCLQKNLDTTITALQEQVTwfpms 386
Cdd:TIGR02168 380 QLETlrskvaqLELQIASLNNEIERLEaRLERLEDRRERLQQEIEELLKKLEEaELKELQAELEELEEELEELQE----- 454
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 387 ncqwskvgyfvlSEEDVCTRLKDHVQQLERNQEAVRLEKTEL---------INRLTRSLEDSQKQCAHLLQSGS----VH 453
Cdd:TIGR02168 455 ------------ELERLEEALEELREELEEAEQALDAAERELaqlqarldsLERLQENLEGFSEGVKALLKNQSglsgIL 522
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 454 EVTQLQLQLQQAQKAHI---LSESMNKALQEELTGLKEEISLYESAAE--LGVLPGDVEGDLSVeltescvglgiknvsw 528
Cdd:TIGR02168 523 GVLSELISVDEGYEAAIeaaLGGRLQAVVVENLNAAKKAIAFLKQNELgrVTFLPLDSIKGTEI---------------- 586
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 529 kQSKANSVAQQEPPNEKLSKDEVilKLKTQVQRLLSSNSMKRHLVSELQRDLRDCRET-MEALQQSKDSD---RGMETKT 604
Cdd:TIGR02168 587 -QGNDREILKNIEGFLGVAKDLV--KFDPKLRKALSYLLGGVLVVDDLDNALELAKKLrPGYRIVTLDGDlvrPGGVITG 663
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 605 ETSEKTTNQLWldspeaiNREDILRLKNEVEVLQQQNQELKEAEEKLRSTNQDLCNQMRQMVQEFDhdkqeavdrcERTY 684
Cdd:TIGR02168 664 GSAKTNSSILE-------RRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELE----------ELSR 726
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 685 QQHHEAMKAQIRESLLAKHAAEKQHLSEVYEGTQSQLRSDLDKLNKEVAAVQECYlevcREKDELESTLRKTMEKAQEQT 764
Cdd:TIGR02168 727 QISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAE----AEIEELEAQIEQLKEELKALR 802
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 765 RQLLEDREEHVrklklELEERYQETLKAEKQSwlkAQAAGATQVEHESRQKLIQQLEEEwQSKLNHSLparrkatsdcgs 844
Cdd:TIGR02168 803 EALDELRAELT-----LLNEEAANLRERLESL---ERRIAATERRLEDLEEQIEELSED-IESLAAEI------------ 861
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 845 qtdqaaypaampnaealvlAEEQAHQVQQEKELTVKEALRKSeVELELKYCESIAQKVETAVQNARSRwilelpMLAEYK 924
Cdd:TIGR02168 862 -------------------EELEELIEELESELEALLNERAS-LEEALALLRSELEELSEELRELESK------RSELRR 915
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958766060 925 ALLRAQQQEWAKQQEVAVAH-RLSLALSEAKEKWKSELQNMKPNVA----SVQELEEKIHSLQKELE 986
Cdd:TIGR02168 916 ELEELREKLAQLELRLEGLEvRIDNLQERLSEEYSLTLEEAEALENkiedDEEEARRRLKRLENKIK 982
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
753-1093 |
1.43e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 49.67 E-value: 1.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 753 LRKTMEKAQEQTRQLLEDREEhvrkLKLELEERYQETLKAEKQSWLKAQAAGATQVEHESRQKLIQQLEEEWQSklnhsl 832
Cdd:TIGR02168 682 LEEKIEELEEKIAELEKALAE----LRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQ------ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 833 parrkatsdcgsqtdqaaypaampNAEALVLAEEQAHQVQQEKEltvKEALRKSEVELELKYCESIAQKVETAVQNARSR 912
Cdd:TIGR02168 752 ------------------------LSKELTELEAEIEELEERLE---EAEEELAEAEAEIEELEAQIEQLKEELKALREA 804
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 913 wILELPmlAEYKAL-LRAQQQEWAKQQEVAVAHRLSLALSEAKEKWKSELQNMKPNVASVQELEEKIHSLQKELELKDEE 991
Cdd:TIGR02168 805 -LDELR--AELTLLnEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNE 881
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 992 vpvavRAELAKARNEWNKEKQEEIHKIQEQNE-----EDYRQFLEDHRNKINEVLTAAKEDFVKQKTELLLQKETEFQAc 1066
Cdd:TIGR02168 882 -----RASLEEALALLRSELEELSEELRELESkrselRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEE- 955
|
330 340
....*....|....*....|....*..
gi 1958766060 1067 lDQSRKEWTLQEAQRTQLEVHRYEEDI 1093
Cdd:TIGR02168 956 -AEALENKIEDDEEEARRRLKRLENKI 981
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
234-499 |
6.11e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 47.62 E-value: 6.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 234 KAKERQLDSLVEKLNDRERQIRYLNHQLLIVQDEKDGLALSLRESQKLFQSGKEREMQLEAQIHALETQIEAFKVSEEKL 313
Cdd:COG1196 242 EELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEEL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 314 TKKLRTTEITLESLKQQLVELHHS-ESLQRAREQHESVVAGLTQKYEEQVSCLQKNLDTTITALQEQvtwfpmsncqwsk 392
Cdd:COG1196 322 EEELAELEEELEELEEELEELEEElEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEEL------------- 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 393 vgyfvLSEEDVCTRLKDHVQQLERNQEAVRLEKTELINRLtRSLEDSQKQCAHLLQSGSVHEVTQLQLQLQQAQKAHILS 472
Cdd:COG1196 389 -----LEALRAAAELAAQLEELEEAEEALLERLERLEEEL-EELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALL 462
|
250 260
....*....|....*....|....*..
gi 1958766060 473 ESMNKALQEELTGLKEEISLYESAAEL 499
Cdd:COG1196 463 ELLAELLEEAALLEAALAELLEELAEA 489
|
|
| LCD1 |
pfam09798 |
DNA damage checkpoint protein; This is a family of proteins which regulate checkpoint kinases. ... |
228-343 |
8.79e-04 |
|
DNA damage checkpoint protein; This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe this protein is called Rad26 and in Saccharomyces cerevisiae it is called LCD1.
Pssm-ID: 462906 Cd Length: 615 Bit Score: 43.46 E-value: 8.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 228 QLQVLNKAKERQLDSLVEKLND----RERQIRYLNHQLLIVQDEKDGLALSLRESQKLFQSGKeremqleaQIHALETqi 303
Cdd:pfam09798 5 KLELLQQEKEKELEKLKNSYEElkssHEEELEKLKQEVQKLEDEKKFLLNELRSLSATSPASS--------QSHETDT-- 74
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1958766060 304 eafKVSEEKLTKKLRTTEITLESLKQQLVELHHSESLQRA 343
Cdd:pfam09798 75 ---DDSSSVSLKKRKIEESTAESLKQKYIRLQNNRIVDET 111
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
639-1091 |
7.75e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 63.62 E-value: 7.75e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 639 QQNQELKEAEEKLRSTNQDLCNQMRQMVQEfdHDKQEAVDRCERTYQQHHEAMKAQIRESLLAKHAAEKQHLSEVYEGTQ 718
Cdd:PTZ00121 1284 KKAEEKKKADEAKKAEEKKKADEAKKKAEE--AKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEA 1361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 719 SQLRSDLDKLNKEVAAVQECYL----EVCREKDELESTLRKTMEKAQEQTRQLLEDREEHVRKLKLElEERYQETLKAEK 794
Cdd:PTZ00121 1362 AEEKAEAAEKKKEEAKKKADAAkkkaEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAE-EKKKADEAKKKA 1440
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 795 QSWLKAQAAGATQVEHESRQKLIQQLEEEWQSKLNHSLPARRKATSDCGSQTDQAAYPA--AMPNAEALVLAEE--QAHQ 870
Cdd:PTZ00121 1441 EEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKAdeAKKAAEAKKKADEakKAEE 1520
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 871 VQQEKELTVKEALRKSEvelELKYCESI--AQKVETA--VQNARSRWILELPMLAEYKALLRAQQQEWAKQQEVAVAHRL 946
Cdd:PTZ00121 1521 AKKADEAKKAEEAKKAD---EAKKAEEKkkADELKKAeeLKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEV 1597
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 947 SLALSEAKEKWKSELQNMKPNVASVQELEEKIHSLQKELELKDEEVPVAVRAELAKARNEWNKEKQEEIHKIQEQNE--- 1023
Cdd:PTZ00121 1598 MKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKkka 1677
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958766060 1024 EDYRQFLEDHRNKINEVLTAAKEdfvKQKTELLLQKETEFQACLDQSRKEWTLQEAQRTQLEVHRYEE 1091
Cdd:PTZ00121 1678 EEAKKAEEDEKKAAEALKKEAEE---AKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEED 1742
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
624-1107 |
1.67e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 62.26 E-value: 1.67e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 624 REDILRLKNEVEVLQQQNQELKEAEEKLRSTNQDLCNQMRQMVQEFDHDKQEAVDRCERTYQQHHEAMKAQIRESLLAKH 703
Cdd:COG1196 259 EAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEE 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 704 AAEKQHLSEVYEGTQSQLRSDLDKLNKEVAAVQECYLEVCREKDELESTLRkTMEKAQEQTRQLLEDREEHVRKLKLELE 783
Cdd:COG1196 339 LEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELL-EALRAAAELAAQLEELEEAEEALLERLE 417
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 784 ERYQETLKAEKQSWLKAQAAGATQVEHESRQKLIQQLEEEwQSKLNHSLPARRKATSDCGSQTDQAAYPAAmpNAEALVL 863
Cdd:COG1196 418 RLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEE-EEALLELLAELLEEAALLEAALAELLEELA--EAAARLL 494
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 864 AEEQAHQVQQEKELTVKEALRKSE---VELELKYCESIAQKVETAVQNARSRWILELPMLAEYKAllrAQQQEWAKQQEV 940
Cdd:COG1196 495 LLLEAEADYEGFLEGVKAALLLAGlrgLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVA---AAAIEYLKAAKA 571
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 941 AVAHRLSLALSEAKEKWKSELQNMKPNVASVQELEEKIHSLQKELELKDEEVPVAVRAELAKARNEWNKEKQEEIHKIQE 1020
Cdd:COG1196 572 GRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTL 651
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 1021 QNEEDY-RQFLEDHRNKINEVLTAAKEDFVKQKTELLLQKETEFQACLDQSRKEWTLQEAQRTQLEVHRYEEDILTVLDF 1099
Cdd:COG1196 652 EGEGGSaGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLE 731
|
....*...
gi 1958766060 1100 LLRDTQLE 1107
Cdd:COG1196 732 AEREELLE 739
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
623-1092 |
4.76e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 57.84 E-value: 4.76e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 623 NREDILRLKNEVEVLQQQNQELKEAEEKLRStnqDLCNQMRQMVQEFDHDKQEAVDRCERTYQQHHEAMKA--------- 693
Cdd:PTZ00121 1250 NNEEIRKFEEARMAHFARRQAAIKAEEARKA---DELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKAdeakkkaee 1326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 694 -QIRESLLAKHAAEKQHLSEVYEGTQSQLRSDLDKLNKEVAAVQECYLEVCREKDELESTLRKtMEKAQEQTRQLLEDRE 772
Cdd:PTZ00121 1327 aKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEE-KKKADEAKKKAEEDKK 1405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 773 --------EHVRKLKLELEERYQETLKAE----------KQSWLKAQAAGATQVEHESRQKLIQQLEEEWQSKLNHSLPA 834
Cdd:PTZ00121 1406 kadelkkaAAAKKKADEAKKKAEEKKKADeakkkaeeakKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKA 1485
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 835 R--RKATSDCGSQTDQAAYPA-AMPNAEALVLAEE--QAHQVQQEKELTVKEALRKSEVEL---ELKYCESI-----AQK 901
Cdd:PTZ00121 1486 DeaKKKAEEAKKKADEAKKAAeAKKKADEAKKAEEakKADEAKKAEEAKKADEAKKAEEKKkadELKKAEELkkaeeKKK 1565
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 902 VETAvQNARSRWILELPMLAEYKALLRAQQQEWAKQQEVAVAHRLSLALSEAKEKWKSE----LQNMKPNVASVQELEEK 977
Cdd:PTZ00121 1566 AEEA-KKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEelkkAEEEKKKVEQLKKKEAE 1644
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 978 ihSLQKELELKDEEVPVAVRAELAKARNEWNKEKQEEIHKIQEQNEEDYRQFL--EDHRNKINEVLTAAKEDfvKQKTEL 1055
Cdd:PTZ00121 1645 --EKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKkeAEEAKKAEELKKKEAEE--KKKAEE 1720
|
490 500 510
....*....|....*....|....*....|....*..
gi 1958766060 1056 LLQKETEFQACLDQSRKEwtlQEAQRTQLEVHRYEED 1092
Cdd:PTZ00121 1721 LKKAEEENKIKAEEAKKE---AEEDKKKAEEAKKDEE 1754
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
645-955 |
1.06e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.48 E-value: 1.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 645 KEAEEKLRSTNQ------DLCNQMRQMV------------------QEFDHDKQEAVDRcERTYQQHHEAMKAQIRESLL 700
Cdd:COG1196 175 EEAERKLEATEEnlerleDILGELERQLeplerqaekaeryrelkeELKELEAELLLLK-LRELEAELEELEAELEELEA 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 701 AKHAAEKQHlsEVYEGTQSQLRSDLDKLNKEVAAVQECYLEVCREKDELESTLRKTMEKAQEQTRQL--LEDREEHVRKL 778
Cdd:COG1196 254 ELEELEAEL--AELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLeeLEEELAELEEE 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 779 KLELEERYQETLKAEKQSWLKAQAAGATQVEHESRQKLIQQLEEEWQSKLNHSLPARRKATSDCGSQTDQAAYPAAmpnA 858
Cdd:COG1196 332 LEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEE---A 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 859 EALVLAEEQAHQVQQEKELTVKEALRKSEVELELKYCESIAQKVETAVQNARsrwiLELPMLAEYKALLRAQQQEWAKQQ 938
Cdd:COG1196 409 EEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEA----LLELLAELLEEAALLEAALAELLE 484
|
330
....*....|....*..
gi 1958766060 939 EVAVAHRLSLALSEAKE 955
Cdd:COG1196 485 ELAEAAARLLLLLEAEA 501
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
639-1051 |
4.30e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 54.76 E-value: 4.30e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 639 QQNQELKEAEEKLRSTNQDLCNQMRQMVQEfDHDKQEAVDRCERTYQQHHEAMKAQI---RESLLAKHAAEKQHLSEVYE 715
Cdd:PTZ00121 1360 EAAEEKAEAAEKKKEEAKKKADAAKKKAEE-KKKADEAKKKAEEDKKKADELKKAAAakkKADEAKKKAEEKKKADEAKK 1438
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 716 GTQSQLRSDLDKLNKEVAAVQECYLEVCREKDELESTLRKTME---------KAQEQTRQLLEDREEHVRKLKLELEERY 786
Cdd:PTZ00121 1439 KAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEakkadeakkKAEEAKKKADEAKKAAEAKKKADEAKKA 1518
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 787 QETLKAE--KQSWLKAQAAGATQVEHESRQKLIQQLEEEWQSKLNHSLPARRKATSDCGSQTDQAAYPAAMPNA---EAL 861
Cdd:PTZ00121 1519 EEAKKADeaKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEArieEVM 1598
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 862 VLAEE----QAHQVQQEKELTVK-EALRKSEVELelKYCESIAQKVETAVQNArsrwilELPMLAEYKALLRAQQQEWAK 936
Cdd:PTZ00121 1599 KLYEEekkmKAEEAKKAEEAKIKaEELKKAEEEK--KKVEQLKKKEAEEKKKA------EELKKAEEENKIKAAEEAKKA 1670
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 937 QQEVAVAHRLSLAlSEAKEKWKSELQNMKPNVASVQELEEKI-HSLQKELELKDEEVPVAVRAELAKARNEWNKEKQEEI 1015
Cdd:PTZ00121 1671 EEDKKKAEEAKKA-EEDEKKAAEALKKEAEEAKKAEELKKKEaEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEA 1749
|
410 420 430
....*....|....*....|....*....|....*.
gi 1958766060 1016 HKiqEQNEEDYRQFLEDHRNKINEVLTAAKEDFVKQ 1051
Cdd:PTZ00121 1750 KK--DEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEE 1783
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
744-1091 |
7.38e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.52 E-value: 7.38e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 744 REKDELESTLRKTMEKAQEQTRQLLEDREEHVRKLKLELEERYQETLKAEKQSwlkaQAAGATQVEHESRQKLIQQLEEE 823
Cdd:PTZ00121 1088 RADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDAR----KAEEARKAEDAKRVEIARKAEDA 1163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 824 WQSKLNHSLPARRKAtsDCGSQTDQAAYPAAMPNAEALVLAEE--QAHQVQQEKELTVKEALRKSEvelELKYCESIAQK 901
Cdd:PTZ00121 1164 RKAEEARKAEDAKKA--EAARKAEEVRKAEELRKAEDARKAEAarKAEEERKAEEARKAEDAKKAE---AVKKAEEAKKD 1238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 902 VETAVQNARSRWILELPMLAEYKALLRAQQQEWAKQQEVavahRLSLALSEAKEKWKSELQNMKPNVASVQELEEKIHSL 981
Cdd:PTZ00121 1239 AEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEA----RKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEA 1314
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 982 QKELELKDEEVPVAVRAELAKARNEWNKEKQE-----------EIHKIQEQNEEDYRQfLEDHRNKINEVLTAAKE---- 1046
Cdd:PTZ00121 1315 KKADEAKKKAEEAKKKADAAKKKAEEAKKAAEaakaeaeaaadEAEAAEEKAEAAEKK-KEEAKKKADAAKKKAEEkkka 1393
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 1958766060 1047 DFVKQKTELLLQKETEFQACLDQSRKEwtlQEAQRTQLEVHRYEE 1091
Cdd:PTZ00121 1394 DEAKKKAEEDKKKADELKKAAAAKKKA---DEAKKKAEEKKKADE 1435
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
744-1092 |
1.18e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 49.97 E-value: 1.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 744 REKDELESTLRKTMEKAQEQTRQLLEDREEHVRKLKLELEERyqETLKAEKQSWLKAQAAGATQVEHEsrQKLIQQLEEE 823
Cdd:pfam02463 166 RLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAK--KALEYYQLKEKLELEEEYLLYLDY--LKLNEERIDL 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 824 WQSKLNHSLparrkatsdcgsqtdqaaypaampNAEALVLAEEQAHQ--VQQEKELTVKEALRKSEVELELKYCESIAQK 901
Cdd:pfam02463 242 LQELLRDEQ------------------------EEIESSKQEIEKEEekLAQVLKENKEEEKEKKLQEEELKLLAKEEEE 297
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 902 VETAVQNARSRWILELPMLAEYKALLRAQQQEWAKQQEVAVAHRLSLALSEAKekwKSELQNMKPNVASVQELEEKIHSL 981
Cdd:pfam02463 298 LKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIK---REAEEEEEEELEKLQEKLEQLEEE 374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 982 QKELELKDEEVPVAVRAELAKARNEWNKEKQE--EIHKIQEQNEEDYR---QFLEDHRNKINEVLTAAKEDFVKQKTELL 1056
Cdd:pfam02463 375 LLAKKKLESERLSSAAKLKEEELELKSEEEKEaqLLLELARQLEDLLKeekKEELEILEEEEESIELKQGKLTEEKEELE 454
|
330 340 350
....*....|....*....|....*....|....*.
gi 1958766060 1057 LQKETEFQACLDQSRKEWTLQEAQRTQLEVHRYEED 1092
Cdd:pfam02463 455 KQELKLLKDELELKKSEDLLKETQLVKLQEQLELLL 490
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
236-986 |
1.28e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 49.67 E-value: 1.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 236 KERQLDSLVEKLNDRERQIRYLNHQLLIVQDEKDGLALSLRESQKLFQSGKEREMQLEAQIHALETQIEAFKVSEEKLTK 315
Cdd:TIGR02168 300 LEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEE 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 316 KLRT-------TEITLESLKQQLVELH-HSESLQRAREQHESVVAGLTQKYEE-QVSCLQKNLDTTITALQEQVTwfpms 386
Cdd:TIGR02168 380 QLETlrskvaqLELQIASLNNEIERLEaRLERLEDRRERLQQEIEELLKKLEEaELKELQAELEELEEELEELQE----- 454
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 387 ncqwskvgyfvlSEEDVCTRLKDHVQQLERNQEAVRLEKTEL---------INRLTRSLEDSQKQCAHLLQSGS----VH 453
Cdd:TIGR02168 455 ------------ELERLEEALEELREELEEAEQALDAAERELaqlqarldsLERLQENLEGFSEGVKALLKNQSglsgIL 522
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 454 EVTQLQLQLQQAQKAHI---LSESMNKALQEELTGLKEEISLYESAAE--LGVLPGDVEGDLSVeltescvglgiknvsw 528
Cdd:TIGR02168 523 GVLSELISVDEGYEAAIeaaLGGRLQAVVVENLNAAKKAIAFLKQNELgrVTFLPLDSIKGTEI---------------- 586
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 529 kQSKANSVAQQEPPNEKLSKDEVilKLKTQVQRLLSSNSMKRHLVSELQRDLRDCRET-MEALQQSKDSD---RGMETKT 604
Cdd:TIGR02168 587 -QGNDREILKNIEGFLGVAKDLV--KFDPKLRKALSYLLGGVLVVDDLDNALELAKKLrPGYRIVTLDGDlvrPGGVITG 663
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 605 ETSEKTTNQLWldspeaiNREDILRLKNEVEVLQQQNQELKEAEEKLRSTNQDLCNQMRQMVQEFDhdkqeavdrcERTY 684
Cdd:TIGR02168 664 GSAKTNSSILE-------RRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELE----------ELSR 726
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 685 QQHHEAMKAQIRESLLAKHAAEKQHLSEVYEGTQSQLRSDLDKLNKEVAAVQECYlevcREKDELESTLRKTMEKAQEQT 764
Cdd:TIGR02168 727 QISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAE----AEIEELEAQIEQLKEELKALR 802
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 765 RQLLEDREEHVrklklELEERYQETLKAEKQSwlkAQAAGATQVEHESRQKLIQQLEEEwQSKLNHSLparrkatsdcgs 844
Cdd:TIGR02168 803 EALDELRAELT-----LLNEEAANLRERLESL---ERRIAATERRLEDLEEQIEELSED-IESLAAEI------------ 861
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 845 qtdqaaypaampnaealvlAEEQAHQVQQEKELTVKEALRKSeVELELKYCESIAQKVETAVQNARSRwilelpMLAEYK 924
Cdd:TIGR02168 862 -------------------EELEELIEELESELEALLNERAS-LEEALALLRSELEELSEELRELESK------RSELRR 915
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958766060 925 ALLRAQQQEWAKQQEVAVAH-RLSLALSEAKEKWKSELQNMKPNVA----SVQELEEKIHSLQKELE 986
Cdd:TIGR02168 916 ELEELREKLAQLELRLEGLEvRIDNLQERLSEEYSLTLEEAEALENkiedDEEEARRRLKRLENKIK 982
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
753-1093 |
1.43e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 49.67 E-value: 1.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 753 LRKTMEKAQEQTRQLLEDREEhvrkLKLELEERYQETLKAEKQSWLKAQAAGATQVEHESRQKLIQQLEEEWQSklnhsl 832
Cdd:TIGR02168 682 LEEKIEELEEKIAELEKALAE----LRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQ------ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 833 parrkatsdcgsqtdqaaypaampNAEALVLAEEQAHQVQQEKEltvKEALRKSEVELELKYCESIAQKVETAVQNARSR 912
Cdd:TIGR02168 752 ------------------------LSKELTELEAEIEELEERLE---EAEEELAEAEAEIEELEAQIEQLKEELKALREA 804
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 913 wILELPmlAEYKAL-LRAQQQEWAKQQEVAVAHRLSLALSEAKEKWKSELQNMKPNVASVQELEEKIHSLQKELELKDEE 991
Cdd:TIGR02168 805 -LDELR--AELTLLnEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNE 881
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 992 vpvavRAELAKARNEWNKEKQEEIHKIQEQNE-----EDYRQFLEDHRNKINEVLTAAKEDFVKQKTELLLQKETEFQAc 1066
Cdd:TIGR02168 882 -----RASLEEALALLRSELEELSEELRELESkrselRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEE- 955
|
330 340
....*....|....*....|....*..
gi 1958766060 1067 lDQSRKEWTLQEAQRTQLEVHRYEEDI 1093
Cdd:TIGR02168 956 -AEALENKIEDDEEEARRRLKRLENKI 981
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
234-937 |
1.63e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 49.28 E-value: 1.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 234 KAKERQLDSLVEKLNDRERQIRYLNHQLLIVQDEKDGLALSLRESQKLFQSGKEREMQLEAQIHALETQIEAFKVSEEKL 313
Cdd:TIGR02168 235 EELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 314 TKKLRTTEITLESLKQQLVELhhSESLQRAREQHESV---VAGLTQKYEEQVScLQKNLDTTITALQEQVTWFPmsncqw 390
Cdd:TIGR02168 315 ERQLEELEAQLEELESKLDEL--AEELAELEEKLEELkeeLESLEAELEELEA-ELEELESRLEELEEQLETLR------ 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 391 SKVGYFVLSEEDV---CTRLKDHVQQLERNQEAVRLEKTELINRLTRS-LEDSQKQCAHLLQSgsvhEVTQLQLQLQQAQ 466
Cdd:TIGR02168 386 SKVAQLELQIASLnneIERLEARLERLEDRRERLQQEIEELLKKLEEAeLKELQAELEELEEE----LEELQEELERLEE 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 467 KAHILSESMNKALQEELTGLKEEISLYESAAELGVLPGDVEG---DLSVELTESCVGLGIKNVSWKQ-------SKANSV 536
Cdd:TIGR02168 462 ALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGfseGVKALLKNQSGLSGILGVLSELisvdegyEAAIEA 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 537 AQQEPPNEKLSKDEVILKLktQVQRLLSSNSMKRHLVSELQRDLRDCRETMEALQQSKDSDRGMETKTETSEKTTN---Q 613
Cdd:TIGR02168 542 ALGGRLQAVVVENLNAAKK--AIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRkalS 619
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 614 LWL-------DSPEAIN---------------------------------------REDILRLKNEVEVLQQQNQELKEA 647
Cdd:TIGR02168 620 YLLggvlvvdDLDNALElakklrpgyrivtldgdlvrpggvitggsaktnssilerRREIEELEEKIEELEEKIAELEKA 699
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 648 EEKLRSTNQDLCNQMRQMVQEFDhdkqeavdrcERTYQQHHEAMKAQIRESLLAKHAAEKQHLSEVYEGTQSQLRSDLDK 727
Cdd:TIGR02168 700 LAELRKELEELEEELEQLRKELE----------ELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEER 769
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 728 LNKEVAAVQECYlevcREKDELESTLRKTMEKAQEQTRQLLEDREEHVrklklELEERYQETLKAEKQSwlkAQAAGATQ 807
Cdd:TIGR02168 770 LEEAEEELAEAE----AEIEELEAQIEQLKEELKALREALDELRAELT-----LLNEEAANLRERLESL---ERRIAATE 837
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 808 VEHESRQKLIQQLEEEwQSKLNHSLPARRKATSDCGSQTDQA--AYPAAMPNAEALVLAEEQAHQVQQEKELTVKEA--- 882
Cdd:TIGR02168 838 RRLEDLEEQIEELSED-IESLAAEIEELEELIEELESELEALlnERASLEEALALLRSELEELSEELRELESKRSELrre 916
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*...
gi 1958766060 883 ---LRKSEVELELKyCESIAQKVETAVQNARSRWILELPMLAEYKALLRAQQQEWAKQ 937
Cdd:TIGR02168 917 leeLREKLAQLELR-LEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRR 973
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
719-1071 |
4.49e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.76 E-value: 4.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 719 SQLRSDLDKLNKEVAAVQEcYLEVCREKDELESTLR----KTMEKAQEQTRQLLEDREEHVRKLKLELEERYQETLKAEK 794
Cdd:TIGR02169 194 DEKRQQLERLRREREKAER-YQALLKEKREYEGYELlkekEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQ 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 795 qswLKAQAAGATQVEHESRQKLIQQLEEEWQSKLNHSlparRKATSDCGSQTDQAaypaampnAEALVLAEEQAHQVQQE 874
Cdd:TIGR02169 273 ---LLEELNKKIKDLGEEEQLRVKEKIGELEAEIASL----ERSIAEKERELEDA--------EERLAKLEAEIDKLLAE 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 875 KElTVKEALRKSEVELElkycesiaqKVETAVQNARsrwilelpmlAEYKALLRAQQQEWAKQQEVAVAHRlslALSEAK 954
Cdd:TIGR02169 338 IE-ELEREIEEERKRRD---------KLTEEYAELK----------EELEDLRAELEEVDKEFAETRDELK---DYREKL 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 955 EKWKSELQNMKPNVASVQELEEKIHSLQKELELKDEevpvAVRAELAKARNEwNKEKQEEIHKIQEQNE------EDYRQ 1028
Cdd:TIGR02169 395 EKLKREINELKRELDRLQEELQRLSEELADLNAAIA----GIEAKINELEEE-KEDKALEIKKQEWKLEqlaadlSKYEQ 469
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 1958766060 1029 FLEDHRNKINEVltaakEDFVKQKTELLLQKETEFQACLDQSR 1071
Cdd:TIGR02169 470 ELYDLKEEYDRV-----EKELSKLQRELAEAEAQARASEERVR 507
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
234-499 |
6.11e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 47.62 E-value: 6.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 234 KAKERQLDSLVEKLNDRERQIRYLNHQLLIVQDEKDGLALSLRESQKLFQSGKEREMQLEAQIHALETQIEAFKVSEEKL 313
Cdd:COG1196 242 EELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEEL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 314 TKKLRTTEITLESLKQQLVELHHS-ESLQRAREQHESVVAGLTQKYEEQVSCLQKNLDTTITALQEQvtwfpmsncqwsk 392
Cdd:COG1196 322 EEELAELEEELEELEEELEELEEElEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEEL------------- 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 393 vgyfvLSEEDVCTRLKDHVQQLERNQEAVRLEKTELINRLtRSLEDSQKQCAHLLQSGSVHEVTQLQLQLQQAQKAHILS 472
Cdd:COG1196 389 -----LEALRAAAELAAQLEELEEAEEALLERLERLEEEL-EELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALL 462
|
250 260
....*....|....*....|....*..
gi 1958766060 473 ESMNKALQEELTGLKEEISLYESAAEL 499
Cdd:COG1196 463 ELLAELLEEAALLEAALAELLEELAEA 489
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
747-1000 |
6.51e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.22 E-value: 6.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 747 DELESTlRKTMEKAQEQTRQLLEDREEHVRKLKLELEERYQETLKAEKQSWLKAQAAGATQVEHESRQKLIQQLEEEwqs 826
Cdd:COG4913 235 DDLERA-HEALEDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAE--- 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 827 klnhslparrkaTSDCGSQTDQAaypaampnAEALVLAEEQAHQVQQEKELTVKEALRKSEVELELKycESIAQKVETAV 906
Cdd:COG4913 311 ------------LERLEARLDAL--------REELDELEAQIRGNGGDRLEQLEREIERLERELEER--ERRRARLEALL 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 907 QNARSRWILELPMLAEYKALLRAQQQEWAK-----QQEVAVAHRLSLALSEAKEKWKSELQNMKPNVASV-QELEEKIHS 980
Cdd:COG4913 369 AALGLPLPASAEEFAALRAEAAALLEALEEelealEEALAEAEAALRDLRRELRELEAEIASLERRKSNIpARLLALRDA 448
|
250 260
....*....|....*....|
gi 1958766060 981 LQKELELKDEEVPVAvrAEL 1000
Cdd:COG4913 449 LAEALGLDEAELPFV--GEL 466
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
628-1085 |
4.19e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 44.66 E-value: 4.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 628 LRLKNEVEVLQQQNQELKEAEEKLRSTNQDLCNQMRQMVQEFDHDKQEAVDRCERTyqqhheAMKAQIRESLLAKHAaEK 707
Cdd:TIGR02168 291 YALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKL------EELKEELESLEAELE-EL 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 708 QHLSEVYEGTQSQLRSDLDKLNKEVAAVQEcylEVCREKDELEStLRKTMEKAQEQTRQLLEDREEHVRKLKLELEERYQ 787
Cdd:TIGR02168 364 EAELEELESRLEELEEQLETLRSKVAQLEL---QIASLNNEIER-LEARLERLEDRRERLQQEIEELLKKLEEAELKELQ 439
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 788 ETLKAEKQSWLKAQAAGATQVEHESR-QKLIQQLEEEWQSKLN--HSLPARRKATSDCGSQTDQAAYPAAMPNAEALVLA 864
Cdd:TIGR02168 440 AELEELEEELEELQEELERLEEALEElREELEEAEQALDAAERelAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLS 519
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 865 EE-----QAHQVQQEKELTVKEALRKSEVELELKYCESIAQKVETAVQNARSRW-ILELPMLAEYKalLRAQQQEWAKQQ 938
Cdd:TIGR02168 520 GIlgvlsELISVDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVtFLPLDSIKGTE--IQGNDREILKNI 597
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 939 E--------------------------VAVAHRLSLALSEAKEKWKSEL------------------------------Q 962
Cdd:TIGR02168 598 EgflgvakdlvkfdpklrkalsyllggVLVVDDLDNALELAKKLRPGYRivtldgdlvrpggvitggsaktnssilerrR 677
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 963 NMKPNVASVQELEEKIHSLQKEL-------ELKDEEVPVAVRAELAKARNEWNKEKQEEIHKIQEQNEEDYRQFLEDHRN 1035
Cdd:TIGR02168 678 EIEELEEKIEELEEKIAELEKALaelrkelEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELT 757
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|..
gi 1958766060 1036 KINEVLTAAKEDFVKQKTEL--LLQKETEFQACLDQSRKEWTLQEAQRTQLE 1085
Cdd:TIGR02168 758 ELEAEIEELEERLEEAEEELaeAEAEIEELEAQIEQLKEELKALREALDELR 809
|
|
| LCD1 |
pfam09798 |
DNA damage checkpoint protein; This is a family of proteins which regulate checkpoint kinases. ... |
228-343 |
8.79e-04 |
|
DNA damage checkpoint protein; This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe this protein is called Rad26 and in Saccharomyces cerevisiae it is called LCD1.
Pssm-ID: 462906 Cd Length: 615 Bit Score: 43.46 E-value: 8.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 228 QLQVLNKAKERQLDSLVEKLND----RERQIRYLNHQLLIVQDEKDGLALSLRESQKLFQSGKeremqleaQIHALETqi 303
Cdd:pfam09798 5 KLELLQQEKEKELEKLKNSYEElkssHEEELEKLKQEVQKLEDEKKFLLNELRSLSATSPASS--------QSHETDT-- 74
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1958766060 304 eafKVSEEKLTKKLRTTEITLESLKQQLVELHHSESLQRA 343
Cdd:pfam09798 75 ---DDSSSVSLKKRKIEESTAESLKQKYIRLQNNRIVDET 111
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
234-823 |
8.97e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.77 E-value: 8.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 234 KAKERQLDSLVEKLNDRERQIRYLNHQLLIVQDEKDGLALSLRESQKLFQSGKEREMQLEAQIHALETQIEAFKVSEEKL 313
Cdd:COG1196 221 ELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 314 TKKLRTTEITLESLKQQLVELHHS-ESLQRAREQHESVVAGLTQKY---EEQVSCLQKNLDTTITALQEQVTwfpmsncq 389
Cdd:COG1196 301 EQDIARLEERRRELEERLEELEEElAELEEELEELEEELEELEEELeeaEEELEEAEAELAEAEEALLEAEA-------- 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 390 wskvgyfvlSEEDVCTRLKDHVQQLERNQEAvRLEKTELINRLTRSLEDSQKQCAHLLQSGSVHEVTQLQLQLQQAQKAH 469
Cdd:COG1196 373 ---------ELAEAEEELEELAEELLEALRA-AAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEE 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 470 ILSESMNKALQEELTGLKEEISLYESAAELgvlpgdvegdlsvELTESCVGLGIKNVSWKQSKANSVAQQEPPNEKLSKD 549
Cdd:COG1196 443 ALEEAAEEEAELEEEEEALLELLAELLEEA-------------ALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEG 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 550 EVILKLKTQVQRLLSSNSMKRHLVSELQRDLRDCRETMEALQQSKDSDRGMETKTETSEKTTNQLWLDSPEAINREDILR 629
Cdd:COG1196 510 VKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALA 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 630 LKNEVEVLQQQNQELKEAEEKLRSTNQDLCNQMRQMVQEFDHDKQEAVDRCERTYQQHHEAMKAQIRESLLAKHAAEKQH 709
Cdd:COG1196 590 AALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRE 669
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 710 LSEVYEGTQSQLRSDLDKLNKEVAAVqecylevcREKDELESTLRKTMEKAQEQTRQLLEDREEHVRKLKLELEERYQET 789
Cdd:COG1196 670 LLAALLEAEAELEELAERLAEEELEL--------EEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEEL 741
|
570 580 590
....*....|....*....|....*....|....
gi 1958766060 790 LKAEKQSWLKAQAAGATQVEHESRQKLIQQLEEE 823
Cdd:COG1196 742 LEEEELLEEEALEELPEPPDLEELERELERLERE 775
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
544-986 |
9.93e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.39 E-value: 9.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 544 EKLSKDEVILKLKTQVQRLLSSNSMKRHLVSELQRDLRDCRETMEALQQSKDSDRGMETKTETSEKTTNQLwldspEAIN 623
Cdd:COG1196 345 ELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLER-----LERL 419
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 624 REDILRLKNEVEVLQQQNQELKEAEEKLRSTNQDLCNQMRQMVQEFDHDKQEAVDRCERTYQQHHEAMKAQIRESLLAkh 703
Cdd:COG1196 420 EEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLL-- 497
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 704 AAEKQHLSEVYEGTQSQLRSDLDKLNKEVAAVQECYLEV-----CREKDELESTLRKTMEKAQEQTRQLLEDREEHVRKL 778
Cdd:COG1196 498 EAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYeaaleAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFL 577
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 779 KLELEERYQETLKAEKQSWLKAQAAGAT--QVEHESRQKLIQQLEEEWQSKLNHSLPARRKATSDCGSQTDQAAypaAMP 856
Cdd:COG1196 578 PLDKIRARAALAAALARGAIGAAVDLVAsdLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTL---EGE 654
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 857 NAEALVLAEEQAHQVQQEKELTVKEALRKSEVELELKYCESIAQKVETAVQNARSRwilelpmLAEYKALLRAQQQEWAK 936
Cdd:COG1196 655 GGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELA-------EAEEERLEEELEEEALE 727
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|
gi 1958766060 937 QQEVAVAHRLSLALSEAKEKWKSELQNMKPNVASVQELEEKIHSLQKELE 986
Cdd:COG1196 728 EQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIE 777
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
206-770 |
1.35e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.00 E-value: 1.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 206 EGLQQQFLGANETDSAENIHIIQLQVLNKAKERQLDSLVEKLNDRERQIRYLNHQLLIVQDEKDGLALSLRESQKLFQSG 285
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRREL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 286 KEREMQLEAQIHALETQIEAFKVSEEKLTKKLRTTEITLESLKQQLVELhhSESLQRAREQHESVVAGLTQKYEEQVSCL 365
Cdd:COG1196 315 EERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEA--EEALLEAEAELAEAEEELEELAEELLEAL 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 366 QK--NLDTTITALQEQVTwfpmsncqwskvgyfvlSEEDVCTRLKDHVQQLERNQEAVRLEKTELINRLTRSLEDSQKQC 443
Cdd:COG1196 393 RAaaELAAQLEELEEAEE-----------------ALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELE 455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 444 AHLLQSGSVHEVTQLQLQLQQAQKAHILSESMNKALQEELtgLKEEISLYESAAE-----------------LGVLPGDV 506
Cdd:COG1196 456 EEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLL--LLEAEADYEGFLEgvkaalllaglrglagaVAVLIGVE 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 507 EGDLSVELTESCVGLGIKNVS-----------WKQSKA-------NSVAQQEPPNEKLSKDEVILKLKTQVQRLLSSNSM 568
Cdd:COG1196 534 AAYEAALEAALAAALQNIVVEddevaaaaieyLKAAKAgratflpLDKIRARAALAAALARGAIGAAVDLVASDLREADA 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 569 KRHLVSE--LQRDLRDCRETMEALQQSKDSDRGMETKTETSEKTTNQLWLDSPEAINREDILRLKNEVEVLQQQNQELKE 646
Cdd:COG1196 614 RYYVLGDtlLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEEL 693
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 647 AEEKLRSTNQDLCNQMRQMVQEFDHDKQEAVDRCERTYQQHHEAMKAQIRESLLAKHAAEKQHLSEVYEgtqSQLRSDLD 726
Cdd:COG1196 694 ELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDL---EELERELE 770
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958766060 727 KLNKEV--------AAVQEcYLEVCREKDELES----------TLRKTMEKAQEQTRQLLED 770
Cdd:COG1196 771 RLEREIealgpvnlLAIEE-YEELEERYDFLSEqredleeareTLEEAIEEIDRETRERFLE 831
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
532-652 |
2.33e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 42.15 E-value: 2.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 532 KANSVAQQEPPNEKLSKDEVILKLKTQVQRLlssnsmkRHLVSELQRDLRDCRETMEALQQSKDSDRgmetktetseKTT 611
Cdd:COG2433 395 PEAEREKEHEERELTEEEEEIRRLEEQVERL-------EAEVEELEAELEEKDERIERLERELSEAR----------SEE 457
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1958766060 612 NQLWLDSPEAINRE-DILRLKNEVEVLQQQNQELKEAEEKLR 652
Cdd:COG2433 458 RREIRKDREISRLDrEIERLERELEEERERIEELKRKLERLK 499
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
637-1045 |
2.76e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.06 E-value: 2.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 637 LQQQNQELKEAEEKLRStnqdlCNQMRQMVQEFDHDKQEAVDRCERTYQQHHEAMKAQIRESLLAKHAAEKQHLSEvyeg 716
Cdd:COG4717 73 LKELEEELKEAEEKEEE-----YAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAE---- 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 717 tqsqLRSDLDKLNKEVAAVQEcyleVCREKDELESTLRKTMEKAQEQTRQLLEDREEHVRKLKLELEE--RYQETLKAEK 794
Cdd:COG4717 144 ----LPERLEELEERLEELRE----LEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEElqQRLAELEEEL 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 795 QSWLKAQAAGATQVEHESRQKLIQQLEEEWQSKLNHSLPArrkATSDCGSQTDQAAYPAAMPNAEALVLAEEQAHQVQQE 874
Cdd:COG4717 216 EEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIA---AALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLL 292
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 875 KELTVKEALRKSEVELELKYCESIAQKvetAVQNARSRWILELPMLAEYKALLRAQQQEWAKQQEVAVAHRLSLALSEAK 954
Cdd:COG4717 293 LAREKASLGKEAEELQALPALEELEEE---ELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELE 369
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 955 EKWKSELQNMkpNVASVQELEEKIHSLQKELELKDE-EVPVAVRAELAKARNEWNKEKQEEIHKIQEQNEEDYRQFLEDH 1033
Cdd:COG4717 370 QEIAALLAEA--GVEDEEELRAALEQAEEYQELKEElEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEE 447
|
410
....*....|..
gi 1958766060 1034 RNKINEVLTAAK 1045
Cdd:COG4717 448 LEELREELAELE 459
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
637-865 |
4.08e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.48 E-value: 4.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 637 LQQQNQELKEAEEKLrSTNQDLCNQMRQMVQEFdhdkQEAVDRCERtyQQHHEAMKAQIRESLLAKHAAE-----KQHLS 711
Cdd:COG3096 450 EQQATEEVLELEQKL-SVADAARRQFEKAYELV----CKIAGEVER--SQAWQTARELLRRYRSQQALAQrlqqlRAQLA 522
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 712 EV--YEGTQSQLRSDLDKLNKEVAAVQECYLEVCREKDELESTLrktmEKAQEQTRQLLEDREEHVRKLKlELEERYQEt 789
Cdd:COG3096 523 ELeqRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQL----EELEEQAAEAVEQRSELRQQLE-QLRARIKE- 596
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 790 LKAEKQSWLKAQAAGATQVEH-----ESRQKLI----QQLEEEWQSKLNHSLPARRKATSDcgSQTDQAAYPAAMPNAEA 860
Cdd:COG3096 597 LAARAPAWLAAQDALERLREQsgealADSQEVTaamqQLLEREREATVERDELAARKQALE--SQIERLSQPGGAEDPRL 674
|
....*
gi 1958766060 861 LVLAE 865
Cdd:COG3096 675 LALAE 679
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
637-823 |
4.82e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.90 E-value: 4.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 637 LQQQNQELKEAEEKLRSTNQDLcNQMRQMVQEFDHDKQEAvdrcertyQQHHEAMKAQIRESLLAKHAAEKQHLSEVYEG 716
Cdd:COG4942 57 LAALERRIAALARRIRALEQEL-AALEAELAELEKEIAEL--------RAELEAQKEELAELLRALYRLGRQPPLALLLS 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 717 TQS--QLRSDLDKLNKEVAAVQECYLEVCREKDELEsTLRKTMEKAQEQTRQLLEDREEHVRKLKLELEERYQETLKAEK 794
Cdd:COG4942 128 PEDflDAVRRLQYLKYLAPARREQAEELRADLAELA-ALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEK 206
|
170 180
....*....|....*....|....*....
gi 1958766060 795 QSWLKAQAAGATQVEHESRQKLIQQLEEE 823
Cdd:COG4942 207 ELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
235-360 |
4.96e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.05 E-value: 4.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 235 AKERQLDSLVEKLNDRERQIRYLNHQLLIVQDEKDGLALSLRE-SQKLFQSGKEREMQLEAQIHALETQIEAFKVSEEKL 313
Cdd:COG4913 285 FAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDElEAQIRGNGGDRLEQLEREIERLERELEERERRRARL 364
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 1958766060 314 TKKLRTTEITLESLKQQLVELHhsESLQRAREQHESVVAGLTQKYEE 360
Cdd:COG4913 365 EALLAALGLPLPASAEEFAALR--AEAAALLEALEEELEALEEALAE 409
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
643-1013 |
5.21e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.21 E-value: 5.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 643 ELKEAEEKLRSTNQDLCNQMRQMVQEFDHDKQ---EAVDRCERTYQQHHEAMKAQirESLLAKHAAEKQHLSEvyegtqs 719
Cdd:TIGR02169 671 SEPAELQRLRERLEGLKRELSSLQSELRRIENrldELSQELSDASRKIGEIEKEI--EQLEQEEEKLKERLEE------- 741
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 720 qLRSDLDKLNKEVAAVQECYLEVCREKDELESTLRKTMEKAQEQTRQLLEDREEHVRKLKLELEERYQEtlkaekqswLK 799
Cdd:TIGR02169 742 -LEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSR---------IE 811
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 800 AQAAgATQVEHESRQKLIQQLEEEWQSKLNHSLPARRKATSDCGSQTDQAAYPAAMpnaeALVLAEEQAHQVQQEKELTV 879
Cdd:TIGR02169 812 ARLR-EIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEEL----EEELEELEAALRDLESRLGD 886
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 880 KEALRKsEVELELKYCESIAQKVETAVQNARSRwilelpmLAEYKALLRAQQQEWA------KQQEVAVAHRLSLA-LSE 952
Cdd:TIGR02169 887 LKKERD-ELEAQLRELERKIEELEAQIEKKRKR-------LSELKAKLEALEEELSeiedpkGEDEEIPEEELSLEdVQA 958
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958766060 953 AKEKWKSELQNMKP-NVASVQELEEkihSLQKELELKDE-EVPVAVRAELAKARNEWNKEKQE 1013
Cdd:TIGR02169 959 ELQRVEEEIRALEPvNMLAIQEYEE---VLKRLDELKEKrAKLEEERKAILERIEEYEKKKRE 1018
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
625-961 |
6.02e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 40.81 E-value: 6.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 625 EDILR-LKNEVEVLQQQnqelKEAEEKLRstnqdlcnqmRQMVQEFDHDKQEAVDRCERtYQQHHEAMKAQIRE--SLLA 701
Cdd:TIGR02168 192 EDILNeLERQLKSLERQ----AEKAERYK----------ELKAELRELELALLVLRLEE-LREELEELQEELKEaeEELE 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 702 KHAAEKQhlseVYEGTQSQLRSDLDKLNKEVAAVQECYLEVCREKDELESTLRKTMEKAQ----------------EQTR 765
Cdd:TIGR02168 257 ELTAELQ----ELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLAnlerqleeleaqleelESKL 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 766 QLLEDREEHVRKLKLELEERYQETLKAEKQSWLKAQAA----GATQVEHESRQKLIQQLEEEWQSKLN---------HSL 832
Cdd:TIGR02168 333 DELAEELAELEEKLEELKEELESLEAELEELEAELEELesrlEELEEQLETLRSKVAQLELQIASLNNeierlearlERL 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 833 PARRKATSDCGSQTDQAAYPAAMPNAEALVLAEEQAHQVQQEKELTVKEALRKSEVELELKycESIAQKVETAVQNARSR 912
Cdd:TIGR02168 413 EDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEA--EQALDAAERELAQLQAR 490
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 1958766060 913 WILELPMLAEYKALLRAQQQEWAKQQEVAVAHRLSLALSEAKEKWKSEL 961
Cdd:TIGR02168 491 LDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAI 539
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
858-1119 |
6.08e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 41.08 E-value: 6.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 858 AEALVLAEEQAHQVQQEKELTVKEALRKSEV-ELELKYCESIAQKVETAVQNARSRwilelpmLAEYKALLRAQQQEWAK 936
Cdd:COG1196 227 AELLLLKLRELEAELEELEAELEELEAELEElEAELAELEAELEELRLELEELELE-------LEEAQAEEYELLAELAR 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 937 -QQEVAVAHRLSLALSEAKEKWKSELQNMKpnvASVQELEEKIHSLQKELELKDEEVpVAVRAELAKARNEWNKEKQEEI 1015
Cdd:COG1196 300 lEQDIARLEERRRELEERLEELEEELAELE---EELEELEEELEELEEELEEAEEEL-EEAEAELAEAEEALLEAEAELA 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 1016 HKIQEQNEEDYRQF--------LEDHRNKINEVLTAAKEDFVKQKTELLLQKETEFQACLDQSRKEWTLQEAQRTQLEVH 1087
Cdd:COG1196 376 EAEEELEELAEELLealraaaeLAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELE 455
|
250 260 270
....*....|....*....|....*....|..
gi 1958766060 1088 RYEEDILTVLDFLLRDTQLEYDGDSQGKQLLE 1119
Cdd:COG1196 456 EEEEALLELLAELLEEAALLEAALAELLEELA 487
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
624-822 |
7.77e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.67 E-value: 7.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 624 REDILRLKNEVEVLQQQNQELKEAEEKLRSTNQDLcnqmrQMVQEFDHDKQEaVDRCERTYQQHhEAMKAQIRESLLAKH 703
Cdd:COG4913 616 EAELAELEEELAEAEERLEALEAELDALQERREAL-----QRLAEYSWDEID-VASAEREIAEL-EAELERLDASSDDLA 688
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 704 AAEKQhlsevyegtQSQLRSDLDKLNKEVAAVQecylevcREKDELESTLrKTMEKAQEQTRQLLEDREEHVRK-LKLEL 782
Cdd:COG4913 689 ALEEQ---------LEELEAELEELEEELDELK-------GEIGRLEKEL-EQAEEELDELQDRLEAAEDLARLeLRALL 751
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1958766060 783 EERYQETLKAEKQSWLKAQAAGATQVEHESRQKLIQQLEE 822
Cdd:COG4913 752 EERFAAALGDAVERELRENLEERIDALRARLNRAEEELER 791
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
237-823 |
9.21e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 40.31 E-value: 9.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 237 ERQLDSLvEKlnDRERQIRYLNHQLLIVQDEKDGLALSLRESQKLFQSGKEREMQLEAQIHALETQIEAFKVSEEKLTKK 316
Cdd:COG1196 199 ERQLEPL-ER--QAEKAERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLE 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 317 LRTTEITLESLKQQLVELhhSESLQRAREQHESVVAGLTQKYEEQVSclqknLDTTITALQEQvtwfpmsncqwskvgyf 396
Cdd:COG1196 276 LEELELELEEAQAEEYEL--LAELARLEQDIARLEERRRELEERLEE-----LEEELAELEEE----------------- 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 397 VLSEEDVCTRLKDHVQQLERNQEAVRLEKTELINRLTRSLEDSQKQcAHLLQSGSVHEVTQLQLQLQQAQKAHILSESMN 476
Cdd:COG1196 332 LEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEA-EEELEELAEELLEALRAAAELAAQLEELEEAEE 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 477 KALQEELTGLKEEISLYESAAELGVLPGDVEGDLSVELTescvglgiknvswkqskansvaqqeppnEKLSKDEVILKLK 556
Cdd:COG1196 411 ALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAE----------------------------EEAELEEEEEALL 462
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 557 TQVQRLLSSNSMKRHLVSELQRDLRDCRETMEALQQSKDSDRGMETKTETSEKTTNQLWLDSPEAINREDILRLKNEVE- 635
Cdd:COG1196 463 ELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEa 542
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 636 ----VLQQQNQELKEAEEKLRSTNQDLcnqmRQMVQEFDHDKQEAVDRCERTYQQHHEAMKAQIRESLLAKHAAEKQHLS 711
Cdd:COG1196 543 alaaALQNIVVEDDEVAAAAIEYLKAA----KAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVL 618
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766060 712 EVYEGTQSQLRSDLDKLNKEVAAVQECYLEVCREKDELESTLRKTMEKAQEQTRQLLEDREEhvRKLKLELEERYQETLK 791
Cdd:COG1196 619 GDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAE--LEELAERLAEEELELE 696
|
570 580 590
....*....|....*....|....*....|..
gi 1958766060 792 AEKQSWLKAQAAGATQVEHESRQKLIQQLEEE 823
Cdd:COG1196 697 EALLAEEEEERELAEAEEERLEEELEEEALEE 728
|
|
| |
