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Conserved domains on  [gi|1958787587|ref|XP_038934278|]
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ubiquitin carboxyl-terminal hydrolase 15 isoform X7 [Rattus norvegicus]

Protein Classification

ubiquitin carboxyl-terminal hydrolase( domain architecture ID 1000871)

ubiquitin carboxyl-terminal hydrolase is a C19 family peptidase that deubiquitinates polyubiquitinated target proteins

CATH:  3.90.70.10
EC:  3.4.19.12
Gene Ontology:  GO:0016579|GO:0046872|GO:0003723

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
UBP12 super family cl35019
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
60-709 3.51e-142

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


The actual alignment was detected with superfamily member COG5560:

Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 437.78  E-value: 3.51e-142
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587  60 NEQPGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPRAF 139
Cdd:COG5560   260 NKEAGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGNLHAFTPSGF 339
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587 140 KTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQ---LKDADGRPDKVVAEEAWENHLKRNDSIIVDIFH 216
Cdd:COG5560   340 KKTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSkpdLSPGDDVVVKKKAKECWWEHLKRNDSIITDLFQ 419
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587 217 GLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERSLEVYLVRMDPLAKPMQ-YKVIVPKIGNILDLCTALSALSGVpaD 295
Cdd:COG5560   420 GMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGRRQPLKiELDASSTIRGLKKLVDAEYGKLGC--F 497
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587 296 KMIVTDIYNHRFHRIF--AMDENLSSIMERDDIYVFEININrtedteHVVIPVclrekFRHSSYTHHTGSSLFGQPFLM- 372
Cdd:COG5560   498 EIKVMCIYYGGNYNMLepADKVLLQDIPQTDFVYLYETNDN------GIEVPV-----VHLRIEKGYKSKRLFGDPFLQl 566
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587 373 -AVPRNNTEDKLYNLLLLRMCRYVKMSTETEETDGPLRCcedqNINGNGPNGIHeegsPSEMETDEPDDESSQDQELPSE 451
Cdd:COG5560   567 nVLIKASIYDKLVKEFEELLVLVEMKKTDVDLVSEQVRL----LREESSPSSWL----KLETEIDTKREEQVEEEGQMNF 638
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587 452 NENsqsedsvggdndsenglcTEETCkgqLTGHKKRLFTFQFNNLGNtdinyikddtrhirfdDRQLRLDERSflaldwd 531
Cdd:COG5560   639 NDA------------------VVISC---EWEEKRYLSLFSYDPLWT----------------IREIGAAERT------- 674
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587 532 pdlkkryfdenaaedfekhesveykppkrpfVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVH 611
Cdd:COG5560   675 -------------------------------ITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIH 723
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587 612 LKRFSYSRYMRDKLDTLVDFPISDLDMSEFLINPNAGPCRYNLIAVSNHYGGMGGGHYTAFAKNKDDGKWYYFDDSSVST 691
Cdd:COG5560   724 LKRFSSVRSFRDKIDDLVEYPIDDLDLSGVEYMVDDPRLIYDLYAVDNHYGGLSGGHYTAYARNFANNGWYLFDDSRITE 803
                         650
                  ....*....|....*...
gi 1958787587 692 ASEDQIVSKAAYVLFYQR 709
Cdd:COG5560   804 VDPEDSVTSSAYVLFYRR 821
 
Name Accession Description Interval E-value
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
60-709 3.51e-142

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 437.78  E-value: 3.51e-142
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587  60 NEQPGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPRAF 139
Cdd:COG5560   260 NKEAGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGNLHAFTPSGF 339
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587 140 KTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQ---LKDADGRPDKVVAEEAWENHLKRNDSIIVDIFH 216
Cdd:COG5560   340 KKTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSkpdLSPGDDVVVKKKAKECWWEHLKRNDSIITDLFQ 419
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587 217 GLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERSLEVYLVRMDPLAKPMQ-YKVIVPKIGNILDLCTALSALSGVpaD 295
Cdd:COG5560   420 GMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGRRQPLKiELDASSTIRGLKKLVDAEYGKLGC--F 497
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587 296 KMIVTDIYNHRFHRIF--AMDENLSSIMERDDIYVFEININrtedteHVVIPVclrekFRHSSYTHHTGSSLFGQPFLM- 372
Cdd:COG5560   498 EIKVMCIYYGGNYNMLepADKVLLQDIPQTDFVYLYETNDN------GIEVPV-----VHLRIEKGYKSKRLFGDPFLQl 566
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587 373 -AVPRNNTEDKLYNLLLLRMCRYVKMSTETEETDGPLRCcedqNINGNGPNGIHeegsPSEMETDEPDDESSQDQELPSE 451
Cdd:COG5560   567 nVLIKASIYDKLVKEFEELLVLVEMKKTDVDLVSEQVRL----LREESSPSSWL----KLETEIDTKREEQVEEEGQMNF 638
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587 452 NENsqsedsvggdndsenglcTEETCkgqLTGHKKRLFTFQFNNLGNtdinyikddtrhirfdDRQLRLDERSflaldwd 531
Cdd:COG5560   639 NDA------------------VVISC---EWEEKRYLSLFSYDPLWT----------------IREIGAAERT------- 674
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587 532 pdlkkryfdenaaedfekhesveykppkrpfVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVH 611
Cdd:COG5560   675 -------------------------------ITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIH 723
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587 612 LKRFSYSRYMRDKLDTLVDFPISDLDMSEFLINPNAGPCRYNLIAVSNHYGGMGGGHYTAFAKNKDDGKWYYFDDSSVST 691
Cdd:COG5560   724 LKRFSSVRSFRDKIDDLVEYPIDDLDLSGVEYMVDDPRLIYDLYAVDNHYGGLSGGHYTAYARNFANNGWYLFDDSRITE 803
                         650
                  ....*....|....*...
gi 1958787587 692 ASEDQIVSKAAYVLFYQR 709
Cdd:COG5560   804 VDPEDSVTSSAYVLFYRR 821
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
561-708 1.95e-59

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 200.59  E-value: 1.95e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587 561 PFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRFSYSRYMRDKLDTLVDFPISDLDMSE 640
Cdd:cd02674    82 PKVTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSRGSTRKLTTPVTFPLNDLDLTP 161
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958787587 641 FLINPN-AGPCRYNLIAVSNHYGGMGGGHYTAFAKNKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQ 708
Cdd:cd02674   162 YVDTRSfTGPFKYDLYAVVNHYGSLNGGHYTAYCKNNETNDWYKFDDSRVTKVSESSVVSSSAYILFYE 230
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
66-257 4.15e-53

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 186.49  E-value: 4.15e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587  66 CGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDkyqEELNFDNPLGMRGEIAKSYAELIKQMWSG-KFSYVTPRAFKTQVG 144
Cdd:pfam00443   1 TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLRI---SPLSEDSRYNKDINLLCALRDLFKALQKNsKSSSVSPKMFKKSLG 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587 145 RFAPQFSGYQQQDCQELLAFLLDGLHEDLNRirkkpyiqlkdadgrpdkvvaeeaweNHLKRNDSIIVDIFHGLFKSTLV 224
Cdd:pfam00443  78 KLNPDFSGYKQQDAQEFLLFLLDGLHEDLNG--------------------------NHSTENESLITDLFRGQLKSRLK 131
                         170       180       190
                  ....*....|....*....|....*....|...
gi 1958787587 225 CPECAKISVTFDPFCYLTLPLPMKKERSLEVYL 257
Cdd:pfam00443 132 CLSCGEVSETFEPFSDLSLPIPGDSAELKTASL 164
 
Name Accession Description Interval E-value
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
60-709 3.51e-142

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 437.78  E-value: 3.51e-142
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587  60 NEQPGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPRAF 139
Cdd:COG5560   260 NKEAGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGNLHAFTPSGF 339
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587 140 KTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQ---LKDADGRPDKVVAEEAWENHLKRNDSIIVDIFH 216
Cdd:COG5560   340 KKTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSkpdLSPGDDVVVKKKAKECWWEHLKRNDSIITDLFQ 419
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587 217 GLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERSLEVYLVRMDPLAKPMQ-YKVIVPKIGNILDLCTALSALSGVpaD 295
Cdd:COG5560   420 GMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGRRQPLKiELDASSTIRGLKKLVDAEYGKLGC--F 497
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587 296 KMIVTDIYNHRFHRIF--AMDENLSSIMERDDIYVFEININrtedteHVVIPVclrekFRHSSYTHHTGSSLFGQPFLM- 372
Cdd:COG5560   498 EIKVMCIYYGGNYNMLepADKVLLQDIPQTDFVYLYETNDN------GIEVPV-----VHLRIEKGYKSKRLFGDPFLQl 566
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587 373 -AVPRNNTEDKLYNLLLLRMCRYVKMSTETEETDGPLRCcedqNINGNGPNGIHeegsPSEMETDEPDDESSQDQELPSE 451
Cdd:COG5560   567 nVLIKASIYDKLVKEFEELLVLVEMKKTDVDLVSEQVRL----LREESSPSSWL----KLETEIDTKREEQVEEEGQMNF 638
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587 452 NENsqsedsvggdndsenglcTEETCkgqLTGHKKRLFTFQFNNLGNtdinyikddtrhirfdDRQLRLDERSflaldwd 531
Cdd:COG5560   639 NDA------------------VVISC---EWEEKRYLSLFSYDPLWT----------------IREIGAAERT------- 674
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587 532 pdlkkryfdenaaedfekhesveykppkrpfVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVH 611
Cdd:COG5560   675 -------------------------------ITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIH 723
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587 612 LKRFSYSRYMRDKLDTLVDFPISDLDMSEFLINPNAGPCRYNLIAVSNHYGGMGGGHYTAFAKNKDDGKWYYFDDSSVST 691
Cdd:COG5560   724 LKRFSSVRSFRDKIDDLVEYPIDDLDLSGVEYMVDDPRLIYDLYAVDNHYGGLSGGHYTAYARNFANNGWYLFDDSRITE 803
                         650
                  ....*....|....*...
gi 1958787587 692 ASEDQIVSKAAYVLFYQR 709
Cdd:COG5560   804 VDPEDSVTSSAYVLFYRR 821
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
561-708 1.95e-59

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 200.59  E-value: 1.95e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587 561 PFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRFSYSRYMRDKLDTLVDFPISDLDMSE 640
Cdd:cd02674    82 PKVTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSRGSTRKLTTPVTFPLNDLDLTP 161
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958787587 641 FLINPN-AGPCRYNLIAVSNHYGGMGGGHYTAFAKNKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQ 708
Cdd:cd02674   162 YVDTRSfTGPFKYDLYAVVNHYGSLNGGHYTAYCKNNETNDWYKFDDSRVTKVSESSVVSSSAYILFYE 230
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
66-257 4.15e-53

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 186.49  E-value: 4.15e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587  66 CGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDkyqEELNFDNPLGMRGEIAKSYAELIKQMWSG-KFSYVTPRAFKTQVG 144
Cdd:pfam00443   1 TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLRI---SPLSEDSRYNKDINLLCALRDLFKALQKNsKSSSVSPKMFKKSLG 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587 145 RFAPQFSGYQQQDCQELLAFLLDGLHEDLNRirkkpyiqlkdadgrpdkvvaeeaweNHLKRNDSIIVDIFHGLFKSTLV 224
Cdd:pfam00443  78 KLNPDFSGYKQQDAQEFLLFLLDGLHEDLNG--------------------------NHSTENESLITDLFRGQLKSRLK 131
                         170       180       190
                  ....*....|....*....|....*....|...
gi 1958787587 225 CPECAKISVTFDPFCYLTLPLPMKKERSLEVYL 257
Cdd:pfam00443 132 CLSCGEVSETFEPFSDLSLPIPGDSAELKTASL 164
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
552-707 5.52e-50

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 177.63  E-value: 5.52e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587 552 SVEYKPPKR--PFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRFSYSRYMRDKLDTLV 629
Cdd:pfam00443 149 SLPIPGDSAelKTASLQICFLQFSKLEELDDEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSYNRSTWEKLNTEV 228
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587 630 DFPIsDLDMSEFLINPNAGP----CRYNLIAVSNHYGGMGGGHYTAFAKNKDDGKWYYFDDSSVSTASED-QIVSKAAYV 704
Cdd:pfam00443 229 EFPL-ELDLSRYLAEELKPKtnnlQDYRLVAVVVHSGSLSSGHYIAYIKAYENNRWYKFDDEKVTEVDEEtAVLSSSAYI 307

                  ...
gi 1958787587 705 LFY 707
Cdd:pfam00443 308 LFY 310
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
552-708 5.44e-37

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 139.54  E-value: 5.44e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587 552 SVEYKPPKRPFVKLKDCIELFTTKEKLGAEDPWYCpNCKEHQQATKKLDLWSLPPVLVVHLKRFSYSRYMR-DKLDTLVD 630
Cdd:cd02257    88 SLPLPVKGLPQVSLEDCLEKFFKEEILEGDNCYKC-EKKKKQEATKRLKIKKLPPVLIIHLKRFSFNEDGTkEKLNTKVS 166
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587 631 FPISdLDMSEFLI------NPNAGPCRYNLIAVSNHYGGMGGG-HYTAFAKNKDDGKWYYFDDSSVSTASEDQIV----- 698
Cdd:cd02257   167 FPLE-LDLSPYLSegekdsDSDNGSYKYELVAVVVHSGTSADSgHYVAYVKDPSDGKWYKFNDDKVTEVSEEEVLefgsl 245
                         170
                  ....*....|
gi 1958787587 699 SKAAYVLFYQ 708
Cdd:cd02257   246 SSSAYILFYE 255
Peptidase_C19E cd02661
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
565-707 4.03e-33

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239126 [Multi-domain]  Cd Length: 304  Bit Score: 129.70  E-value: 4.03e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587 565 LKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRFSYSRYmrDKLDTLVDFPiSDLDMSEFLIN 644
Cdd:cd02661   164 LEDALEQFTKPEQLDGENKYKCERCKKKVKASKQLTIHRAPNVLTIHLKRFSNFRG--GKINKQISFP-ETLDLSPYMSQ 240
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958787587 645 PNAGPCRYNLIAVSNHYGGMGGG-HYTAFAKNkDDGKWYYFDDSSVSTASEDQIVSKAAYVLFY 707
Cdd:cd02661   241 PNDGPLKYKLYAVLVHSGFSPHSgHYYCYVKS-SNGKWYNMDDSKVSPVSIETVLSQKAYILFY 303
Peptidase_C19D cd02660
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
564-707 1.17e-31

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239125 [Multi-domain]  Cd Length: 328  Bit Score: 126.33  E-value: 1.17e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587 564 KLKDCIELFTTKEKLGaEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRFSYSRY-MRDKLDTLVDFPiSDLDMSEFL 642
Cdd:cd02660   177 TLSDCLDRFTRPEKLG-DFAYKCSGCGSTQEATKQLSIKKLPPVLCFQLKRFEHSLNkTSRKIDTYVQFP-LELNMTPYT 254
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958787587 643 I---------NPNAGPCRYNLIAVSNHYGGMGGGHYTAFAKNKDDgKWYYFDDSSVSTASEDQIVSKAAYVLFY 707
Cdd:cd02660   255 SssigdtqdsNSLDPDYTYDLFAVVVHKGTLDTGHYTAYCRQGDG-QWFKFDDAMITRVSEEEVLKSQAYLLFY 327
Peptidase_C19D cd02660
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
67-252 7.30e-24

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239125 [Multi-domain]  Cd Length: 328  Bit Score: 103.22  E-value: 7.30e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587  67 GLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMrgeIAKSYAELIKQMW-SGKFSYVTPRAFKTQVGR 145
Cdd:cd02660     2 GLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCLSCSPNSC---LSCAMDEIFQEFYySGDRSPYGPINLLYLSWK 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587 146 FAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPyiqlkdadgrpdkvvaeeaweNHLKRNDSIIVDIFHGLFKSTLVC 225
Cdd:cd02660    79 HSRNLAGYSQQDAHEFFQFLLDQLHTHYGGDKNEA---------------------NDESHCNCIIHQTFSGSLQSSVTC 137
                         170       180
                  ....*....|....*....|....*..
gi 1958787587 226 PECAKISVTFDPFCYLTLPLPMKKERS 252
Cdd:cd02660   138 QRCGGVSTTVDPFLDLSLDIPNKSTPS 164
Peptidase_C19E cd02661
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
66-254 7.89e-23

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239126 [Multi-domain]  Cd Length: 304  Bit Score: 99.66  E-value: 7.89e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587  66 CGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRgEIAKsyaeLIKQMWSGKFSYVTPRAFKTQVGR 145
Cdd:cd02661     2 AGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDCCNEGFCMMC-ALEA----HVERALASSGPGSAPRIFSSNLKQ 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587 146 FAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIqlkdadgrpdkvvaeeawENHLKRNDSIIVDIFHGLFKSTLVC 225
Cdd:cd02661    77 ISKHFRIGRQEDAHEFLRYLLDAMQKACLDRFKKLKA------------------VDPSSQETTLVQQIFGGYLRSQVKC 138
                         170       180
                  ....*....|....*....|....*....
gi 1958787587 226 PECAKISVTFDPFcyLTLPLPMKKERSLE 254
Cdd:cd02661   139 LNCKHVSNTYDPF--LDLSLDIKGADSLE 165
Peptidase_C19L cd02668
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
562-707 1.92e-22

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239133 [Multi-domain]  Cd Length: 324  Bit Score: 99.03  E-value: 1.92e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587 562 FVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRFSYSRYM--RDKLDTLVDFPiSDLDMS 639
Cdd:cd02668   155 HKTLEECIDEFLKEEQLTGDNQYFCESCNSKTDATRRIRLTTLPPTLNFQLLRFVFDRKTgaKKKLNASISFP-EILDMG 233
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587 640 EFLINPNAGPCRYNLIAVSNHY-GGMGGGHYTAFAKNKDDGKWYYFDDSSVS--------------TASEDQ-------I 697
Cdd:cd02668   234 EYLAESDEGSYVYELSGVLIHQgVSAYSGHYIAHIKDEQTGEWYKFNDEDVEempgkplklgnsedPAKPRKseikkgtH 313
                         170
                  ....*....|
gi 1958787587 698 VSKAAYVLFY 707
Cdd:cd02668   314 SSRTAYMLVY 323
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
67-257 8.06e-22

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 95.05  E-value: 8.06e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587  67 GLSNLGNTCFMNSAIQCLSNtpplteyflndkyqeelnfdnplgmrgeiaksyaelikqmwsgkfsyvtprafktqvgrf 146
Cdd:cd02674     1 GLRNLGNTCYMNSILQCLSA------------------------------------------------------------ 20
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587 147 apqfsgyQQQDCQELLAFLLDGLHedlnrirkkpyiqlkdadgrpdkvvaeeawenhlkrndSIIVDIFHGLFKSTLVCP 226
Cdd:cd02674    21 -------DQQDAQEFLLFLLDGLH--------------------------------------SIIVDLFQGQLKSRLTCL 55
                         170       180       190
                  ....*....|....*....|....*....|.
gi 1958787587 227 ECAKISVTFDPFCYLTLPLPMKKERSLEVYL 257
Cdd:cd02674    56 TCGKTSTTFEPFTYLSLPIPSGSGDAPKVTL 86
peptidase_C19C cd02659
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
560-712 9.26e-22

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239124 [Multi-domain]  Cd Length: 334  Bit Score: 97.33  E-value: 9.26e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587 560 RPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRFSYS--RYMRDKLDTLVDFPISdLD 637
Cdd:cd02659   148 KGKKNLEESLDAYVQGETLEGDNKYFCEKCGKKVDAEKGVCFKKLPPVLTLQLKRFEFDfeTMMRIKINDRFEFPLE-LD 226
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587 638 MSEFLINPNA-----------GPCRYNLIAVSNHYGGMGGGHYTAFAKNKDDGKWYYFDDSSVSTASEDQIVSK------ 700
Cdd:cd02659   227 MEPYTEKGLAkkegdsekkdsESYIYELHGVLVHSGDAHGGHYYSYIKDRDDGKWYKFNDDVVTPFDPNDAEEEcfggee 306
                         170       180
                  ....*....|....*....|....*...
gi 1958787587 701 ----------------AAYVLFYQRQDT 712
Cdd:cd02659   307 tqktydsgprafkrttNAYMLFYERKSP 334
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
554-708 4.82e-21

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 93.99  E-value: 4.82e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587 554 EYKPPKRPfVKLKDCIELFTTKEKLGAEDPWYCPNCkehQQATKKLDLWSLPPVLVVHLKRFSYSRYMRD-KLDTLVDFP 632
Cdd:cd02667   103 RSDEIKSE-CSIESCLKQFTEVEILEGNNKFACENC---TKAKKQYLISKLPPVLVIHLKRFQQPRSANLrKVSRHVSFP 178
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587 633 iSDLDMSEFLiNPNAGPC------RYNLIAVSNHYGGMGGGHYTAFAK---------------------NKDDGKWYYFD 685
Cdd:cd02667   179 -EILDLAPFC-DPKCNSSedkssvLYRLYGVVEHSGTMRSGHYVAYVKvrppqqrlsdltkskpaadeaGPGSGQWYYIS 256
                         170       180
                  ....*....|....*....|...
gi 1958787587 686 DSSVSTASEDQIVSKAAYVLFYQ 708
Cdd:cd02667   257 DSDVREVSLEEVLKSEAYLLFYE 279
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
67-254 6.33e-20

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 90.52  E-value: 6.33e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587  67 GLSNLGNTCFMNSAIQCLSNTPPLTEYFLNdkyqeelnfdnplgmrgeiaksyaelikqmwsgkfsyvTPRAFKTQVGRF 146
Cdd:cd02667     1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE--------------------------------------TPKELFSQVCRK 42
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587 147 APQFSGYQQQDCQELLAFLLDGLhedlnrirkKPYIqlkdadgrpdkvvaeeawenhlkrnDSiivdIFHGLFKSTLVCP 226
Cdd:cd02667    43 APQFKGYQQQDSHELLRYLLDGL---------RTFI-------------------------DS----IFGGELTSTIMCE 84
                         170       180       190
                  ....*....|....*....|....*....|
gi 1958787587 227 ECAKISVTFDPFCYLTLPL--PMKKERSLE 254
Cdd:cd02667    85 SCGTVSLVYEPFLDLSLPRsdEIKSECSIE 114
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
67-256 1.65e-19

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 88.69  E-value: 1.65e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587  67 GLSNLGNTCFMNSAIQCLSNtpplteyflndkyqeelnfdnplgmrgeiaksyaelikqmwsgkfsyvtprafktqvgrf 146
Cdd:cd02257     1 GLNNLGNTCYLNSVLQALFS------------------------------------------------------------ 20
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587 147 apqfsgyQQQDCQELLAFLLDGLHEDLNRIRKKpyiqlkdadgrpdkvvaeeawENHLKRNDSIIVDIFHGLFKSTLVCP 226
Cdd:cd02257    21 -------EQQDAHEFLLFLLDKLHEELKKSSKR---------------------TSDSSSLKSLIHDLFGGKLESTIVCL 72
                         170       180       190
                  ....*....|....*....|....*....|
gi 1958787587 227 ECAKISVTFDPFCYLTLPLPMKKERSLEVY 256
Cdd:cd02257    73 ECGHESVSTEPELFLSLPLPVKGLPQVSLE 102
Peptidase_C19B cd02658
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
558-708 2.35e-16

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239123 [Multi-domain]  Cd Length: 311  Bit Score: 80.83  E-value: 2.35e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587 558 PKRPFVKLKDCIELFTTKEKLgaEDpwYCPNCKEHQQATKKLDLWSLPPVLVVHLKRFSYSRYMRD-KLDTLVDFPisdl 636
Cdd:cd02658   173 LVYEPVPLEDCLKAYFAPETI--ED--FCSTCKEKTTATKTTGFKTFPDYLVINMKRFQLLENWVPkKLDVPIDVP---- 244
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958787587 637 dmsEFLinpnaGPCRYNLIAVSNHY-GGMGGGHYTAFAKNKDD--GKWYYFDDSSVSTASEDQIVSKAAYVLFYQ 708
Cdd:cd02658   245 ---EEL-----GPGKYELIAFISHKgTSVHSGHYVAHIKKEIDgeGKWVLFNDEKVVASQDPPEMKKLGYIYFYQ 311
Peptidase_C19G cd02663
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
565-708 1.25e-15

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239128 [Multi-domain]  Cd Length: 300  Bit Score: 78.12  E-value: 1.25e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587 565 LKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRFSYS-RYMR-DKLDTLVDFPisdLDMSEFL 642
Cdd:cd02663   149 ITSCLRQFSATETLCGRNKFYCDECCSLQEAEKRMKIKKLPKILALHLKRFKYDeQLNRyIKLFYRVVFP---LELRLFN 225
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958787587 643 INPNA-GPCR-YNLIAVSNHY-GGMGGGHYTAFAKNKddGKWYYFDDSSVSTASEDQIV--------SKAAYVLFYQ 708
Cdd:cd02663   226 TTDDAeNPDRlYELVAVVVHIgGGPNHGHYVSIVKSH--GGWLLFDDETVEKIDENAVEeffgdspnQATAYVLFYQ 300
Peptidase_C19A cd02657
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
603-707 1.42e-14

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239122 [Multi-domain]  Cd Length: 305  Bit Score: 75.06  E-value: 1.42e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587 603 SLPPVLVVHLKRFSYSRYMRDKLDTL--VDFPIsDLDMSEFLinpnAGPCRYNLIAVSNHYGGMGGG-HYTAFAKNKDDG 679
Cdd:cd02657   195 RLPKYLTVQFVRFFWKRDIQKKAKILrkVKFPF-ELDLYELC----TPSGYYELVAVITHQGRSADSgHYVAWVRRKNDG 269
                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1958787587 680 KWYYFDDSSVSTASEDQIVSKA-------AYVLFY 707
Cdd:cd02657   270 KWIKFDDDKVSEVTEEDILKLSgggdwhiAYILLY 304
Peptidase_C19B cd02658
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
67-247 4.20e-14

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239123 [Multi-domain]  Cd Length: 311  Bit Score: 73.90  E-value: 4.20e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587  67 GLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFDNP-LGMRGEIAKsyaeLIKQMWSGKFSY------------ 133
Cdd:cd02658     1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKFPSDVVDPaNDLNCQLIK----LADGLLSGRYSKpaslksendpyq 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587 134 --VTPRAFKTQVGRFAPQFSGYQQQDCQELLAFLLDglhedlnRIRKKPYIQLKDADGRPDKVVAEEawenhlkrndsii 211
Cdd:cd02658    77 vgIKPSMFKALIGKGHPEFSTMRQQDALEFLLHLID-------KLDRESFKNLGLNPNDLFKFMIED------------- 136
                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1958787587 212 vdifhglfksTLVCPECAKISVTFDPFCYLTLPLPM 247
Cdd:cd02658   137 ----------RLECLSCKKVKYTSELSEILSLPVPK 162
Peptidase_C19A cd02657
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
67-180 7.02e-14

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239122 [Multi-domain]  Cd Length: 305  Bit Score: 73.13  E-value: 7.02e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587  67 GLSNLGNTCFMNSAIQCLSNTPPLteyflndkyQEELNFDNPLGMRGE-----IAKSYAELIKQMwSGKFSYVTPRAFKT 141
Cdd:cd02657     1 GLTNLGNTCYLNSTLQCLRSVPEL---------RDALKNYNPARRGANqssdnLTNALRDLFDTM-DKKQEPVPPIEFLQ 70
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1958787587 142 QVGRFAPQFS------GYQQQDCQELLAFLLDGLHEDLNRIRKKP 180
Cdd:cd02657    71 LLRMAFPQFAekqnqgGYAQQDAEECWSQLLSVLSQKLPGAGSKG 115
Peptidase_C19M cd02669
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
63-282 1.15e-12

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239134 [Multi-domain]  Cd Length: 440  Bit Score: 70.81  E-value: 1.15e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587  63 PGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFL-NDKYQEELNFDNPLGmrgeiaKSYAELIKQMWSgkfsyvtPRAFKT 141
Cdd:cd02669   117 PGFVGLNNIKNNDYANVIIQALSHVKPIRNFFLlYENYENIKDRKSELV------KRLSELIRKIWN-------PRNFKG 183
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587 142 QVG----------RFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKpyiqlkdadgrpdkvvaeeawenhlkrNDSII 211
Cdd:cd02669   184 HVSphellqavskVSKKKFSITEQSDPVEFLSWLLNTLHKDLGGSKKP---------------------------NSSII 236
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587 212 VDIFHGLFK---------------STLVCPECAKISVTFDPFCYLTLPLPMKkerslevylvrmdPLAKPMQYKVIVPKI 276
Cdd:cd02669   237 HDCFQGKVQietqkikphaeeegsKDKFFKDSRVKKTSVSPFLLLTLDLPPP-------------PLFKDGNEENIIPQV 303

                  ....*.
gi 1958787587 277 gNILDL 282
Cdd:cd02669   304 -PLKQL 308
Peptidase_C19M cd02669
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
557-708 3.27e-11

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239134 [Multi-domain]  Cd Length: 440  Bit Score: 66.19  E-value: 3.27e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587 557 PPKRPF--VKLKDCIELFTTKEKLGAEDPwycPNCKEHQQATKKLDLWSLPPVLVVHLKRFSYSRYMRDKLDTLVDFPIS 634
Cdd:cd02669   286 PPPPLFkdGNEENIIPQVPLKQLLKKYDG---KTETELKDSLKRYLISRLPKYLIFHIKRFSKNNFFKEKNPTIVNFPIK 362
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958787587 635 DLDMSEFLINPNAGPCR---YNLIA-VSNHYGGMGGGHYTAFAKNKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQ 708
Cdd:cd02669   363 NLDLSDYVHFDKPSLNLstkYNLVAnIVHEGTPQEDGTWRVQLRHKSTNKWFEIQDLNVKEVLPQLIFLSESYIQIWE 440
COG5077 COG5077
Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, ...
586-697 1.25e-10

Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227409 [Multi-domain]  Cd Length: 1089  Bit Score: 65.28  E-value: 1.25e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587  586 CPNCKEH--QQATKKLDLWSLPPVLVVHLKRFSYS--RYMRDKLDTLVDFPISdLDMSEFLiNPNA-----GPCRYNLIA 656
Cdd:COG5077    358 RYNAEKHglQDAKKGVIFESLPPVLHLQLKRFEYDfeRDMMVKINDRYEFPLE-IDLLPFL-DRDAdksenSDAVYVLYG 435
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|.
gi 1958787587  657 VSNHYGGMGGGHYTAFAKNKDDGKWYYFDDSSVSTASEDQI 697
Cdd:COG5077    436 VLVHSGDLHEGHYYALLKPEKDGRWYKFDDTRVTRATEKEV 476
Peptidase_C19H cd02664
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
562-708 2.33e-10

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239129 [Multi-domain]  Cd Length: 327  Bit Score: 62.51  E-value: 2.33e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587 562 FVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRFSYSR--YMRDKL------DTLVDFPI 633
Cdd:cd02664   133 FPSVQDLLNYFLSPEKLTGDNQYYCEKCASLQDAEKEMKVTGAPEYLILTLLRFSYDQktHVREKImdnvsiNEVLSLPV 212
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587 634 SD-LDMSEFLINPNAGPCR-----------YNLIAV---------SNHY-----------GGMGGGHYTAFAKNKDDGK- 680
Cdd:cd02664   213 RVeSKSSESPLEKKEEESGddgelvtrqvhYRLYAVvvhsgysseSGHYftyardqtdadSTGQECPEPKDAEENDESKn 292
                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1958787587 681 WYYFDDSSVS--TASEDQIV-----SKAAYVLFYQ 708
Cdd:cd02664   293 WYLFNDSRVTfsSFESVQNVtsrfpKDTPYILFYE 327
Peptidase_C19F cd02662
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
565-708 2.68e-10

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239127 [Multi-domain]  Cd Length: 240  Bit Score: 61.23  E-value: 2.68e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587 565 LKDCIELFTTKEKLgaEDPwYCPNCkehQQATKKLdlwslPPVLVVHLKRFSYS-RYMRDKLDTLVDFPisdldmsEFLi 643
Cdd:cd02662    98 LEHCLDDFLSTEII--DDY-KCDRC---QTVIVRL-----PQILCIHLSRSVFDgRGTSTKNSCKVSFP-------ERL- 158
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587 644 npnaGPCRYNLIAVSNHYGGMGGGHYTAF--------------------AKNKDDGKWYYFDDSSVSTASEDQIV-SKAA 702
Cdd:cd02662   159 ----PKVLYRLRAVVVHYGSHSSGHYVCYrrkplfskdkepgsfvrmreGPSSTSHPWWRISDTTVKEVSESEVLeQKSA 234

                  ....*.
gi 1958787587 703 YVLFYQ 708
Cdd:cd02662   235 YMLFYE 240
Peptidase_C19O cd02671
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
545-707 3.59e-10

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239136 [Multi-domain]  Cd Length: 332  Bit Score: 62.22  E-value: 3.59e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587 545 EDFEKHESVEYKP-PKRPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRFSYSRYMRD 623
Cdd:cd02671   161 ELSKSEESSEISPdPKTEMKTLKWAISQFASVERIVGEDKYFCENCHHYTEAERSLLFDKLPEVITIHLKCFAANGSEFD 240
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587 624 ------KLDTLVDFPIsDLDMSEFLINPNAGpcRYNLIAVSNHY-GGMGGGHYTAFAknkddgKWYYFDDSSVSTASEDQ 696
Cdd:cd02671   241 cygglsKVNTPLLTPL-KLSLEEWSTKPKND--VYRLFAVVMHSgATISSGHYTAYV------RWLLFDDSEVKVTEEKD 311
                         170       180
                  ....*....|....*....|
gi 1958787587 697 I---------VSKAAYVLFY 707
Cdd:cd02671   312 FlealspntsSTSTPYLLFY 331
COG5533 COG5533
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
67-180 6.25e-10

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444284 [Multi-domain]  Cd Length: 284  Bit Score: 60.97  E-value: 6.25e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587  67 GLSNLGNTCFMNSAIQCLS-NTPPLTEYFLNDKYQ-----EELNFDNPLGMRGEIAKsyaeLIKQMWSGKfsyvtprafK 140
Cdd:COG5533     1 GLPNLGNTCFMNSVLQILAlYLPKLDELLDDLSKElkvlkNVIRKPEPDLNQEEALK----LFTALWSSK---------E 67
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1958787587 141 TQVGRFAPQfsgYQQQDCQELLAFLLDGLHEDL---NRIRKKP 180
Cdd:COG5533    68 HKVGWIPPM---GSQEDAHELLGKLLDELKLDLvnsFTIRIFK 107
Peptidase_C19H cd02664
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
67-246 1.93e-09

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239129 [Multi-domain]  Cd Length: 327  Bit Score: 59.81  E-value: 1.93e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587  67 GLSNLGNTCFMNSAIQCLSntppLTEYFLNDKYQEelnfdNPLGMRGEIAKSYAELIKQMW---SGKFSYVTPRAFKTQV 143
Cdd:cd02664     1 GLINLGNTCYMNSVLQALF----MAKDFRRQVLSL-----NLPRLGDSQSVMKKLQLLQAHlmhTQRRAEAPPDYFLEAS 71
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587 144 grFAPQFSGYQQQDCQELLAFLLDGLHedlnrirkkpyiqlkdadgrpdkvvaeeawenhlkrndSIIVDIFHGLFKSTL 223
Cdd:cd02664    72 --RPPWFTPGSQQDCSEYLRYLLDRLH--------------------------------------TLIEKMFGGKLSTTI 111
                         170       180
                  ....*....|....*....|...
gi 1958787587 224 VCPECAKISVTFDPFCYLTLPLP 246
Cdd:cd02664   112 RCLNCNSTSARTERFRDLDLSFP 134
peptidase_C19C cd02659
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
64-254 3.38e-07

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239124 [Multi-domain]  Cd Length: 334  Bit Score: 53.03  E-value: 3.38e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587  64 GLCGLSNLGNTCFMNSAIQCLSNTPplteYFLNDKYQEELNFDNPlgmrGEIAKSYAeLIKQMwsgKFSYVTPRAFKTQV 143
Cdd:cd02659     1 GYVGLKNQGATCYMNSLLQQLYMTP----EFRNAVYSIPPTEDDD----DNKSVPLA-LQRLF---LFLQLSESPVKTTE 68
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587 144 GRFAPQFSG------YQQQDCQELLAFLLDGLhedlnrirkkpyiqlkdadgrpdkvvaEEAWENhLKRnDSIIVDIFHG 217
Cdd:cd02659    69 LTDKTRSFGwdslntFEQHDVQEFFRVLFDKL---------------------------EEKLKG-TGQ-EGLIKNLFGG 119
                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1958787587 218 LFKSTLVCPECAKISVTFDPFcyLTLPLPMKKERSLE 254
Cdd:cd02659   120 KLVNYIICKECPHESEREEYF--LDLQVAVKGKKNLE 154
Peptidase_C19O cd02671
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
56-171 3.45e-07

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239136 [Multi-domain]  Cd Length: 332  Bit Score: 52.97  E-value: 3.45e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587  56 PGRNNEQPGLCGLSNLGNTCFMNSAIQCLSNTPplteyflndKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVT 135
Cdd:cd02671    15 CEKRENLLPFVGLNNLGNTCYLNSVLQVLYFCP---------GFKHGLKHLVSLISSVEQLQSSFLLNPEKYNDELANQA 85
                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1958787587 136 PRAFKTQVGRFAPQFSGYQQQDCQELLAFLLDGLHE 171
Cdd:cd02671    86 PRRLLNALREVNPMYEGYLQHDAQEVLQCILGNIQE 121
Peptidase_C19G cd02663
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
67-246 4.86e-07

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239128 [Multi-domain]  Cd Length: 300  Bit Score: 52.31  E-value: 4.86e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587  67 GLSNLGNTCFMNSAIQCLsntpplteYFLNdkyqeelnfdnplgmrgeIAKSYAELIKQMWSGKFSY--VTPRAFKTQVG 144
Cdd:cd02663     1 GLENFGNTCYCNSVLQAL--------YFEN------------------LLTCLKDLFESISEQKKRTgvISPKKFITRLK 54
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587 145 RFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKpyiqlkdaDGRPDKVVAEEAWENHlkrnDSIIVDIFHGLFKSTLV 224
Cdd:cd02663    55 RENELFDNYMHQDAHEFLNFLLNEIAEILDAERKA--------EKANRKLNNNNNAEPQ----PTWVHEIFQGILTNETR 122
                         170       180
                  ....*....|....*....|..
gi 1958787587 225 CPECAKISVTFDPFCYLTLPLP 246
Cdd:cd02663   123 CLTCETVSSRDETFLDLSIDVE 144
Peptidase_C19L cd02668
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
67-254 1.67e-06

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239133 [Multi-domain]  Cd Length: 324  Bit Score: 50.88  E-value: 1.67e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587  67 GLSNLGNTCFMNSAIQCLSNTPPLTEYFLN-----DKYQEELNFDNPLGMRGeIAKSYAELIKQMWSGKFSYVTPRAFKT 141
Cdd:cd02668     1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYEcnsteDAELKNMPPDKPHEPQT-IIDQLQLIFAQLQFGNRSVVDPSGFVK 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587 142 QVGrfapqFSGYQQQDCQELLAFLLDGLHEDLNrirkkpyiQLKDADGRpdkvvaeeawenhlkrndSIIVDIFHGLFKS 221
Cdd:cd02668    80 ALG-----LDTGQQQDAQEFSKLFLSLLEAKLS--------KSKNPDLK------------------NIVQDLFRGEYSY 128
                         170       180       190
                  ....*....|....*....|....*....|...
gi 1958787587 222 TLVCPECAKISVTFDPFcyLTLPLPMKKERSLE 254
Cdd:cd02668   129 VTQCSKCGRESSLPSKF--YELELQLKGHKTLE 159
USP7_C2 pfam14533
Ubiquitin-specific protease C-terminal; This C-terminal domain on many long ubiquitin-specific ...
237-374 2.10e-06

Ubiquitin-specific protease C-terminal; This C-terminal domain on many long ubiquitin-specific proteases has no known function.


Pssm-ID: 464201  Cd Length: 204  Bit Score: 49.02  E-value: 2.10e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587 237 PFCYLTLPLPMK---KERSLEVYLVrMDPLAKPMQYKVIVPKIGNILDLCTALSALSGVP---ADKMIVTDIYNHRFHRI 310
Cdd:pfam14533   1 ALYYEVLDISLSeleNKKSIKVTWL-SPGLKKEEELELLVPKNGTVADLLEELQKKVKLSeegSGKIRLYEVSNHKIYKE 79
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958787587 311 FAMDENLSSIMERDDIYVFEI---NINRTEDTehVVIPVClrekfrHssYtHHTGSSLFGQPFLMAV 374
Cdd:pfam14533  80 LSEDEPIDSLNDYLTLYAEEIpeeELNLDEGE--RLIPVF------H--F-QKEPSRTHGIPFLFVL 135
Peptidase_C19F cd02662
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
67-93 1.22e-05

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239127 [Multi-domain]  Cd Length: 240  Bit Score: 47.36  E-value: 1.22e-05
                          10        20
                  ....*....|....*....|....*..
gi 1958787587  67 GLSNLGNTCFMNSAIQCLSNTPPLTEY 93
Cdd:cd02662     1 GLVNLGNTCFMNSVLQALASLPSLIEY 27
Peptidase_C19Q cd02673
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
586-707 2.72e-04

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239138 [Multi-domain]  Cd Length: 245  Bit Score: 43.29  E-value: 2.72e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587 586 CPNCKeHQQATKKLDLWSLPPVLVVHLKRFsYSRYMRDKldtlvdfpisDLDMSEFLINPNAG-PCRYNLIAVSNHY-GG 663
Cdd:cd02673   129 CSSCK-CESAISSERIMTFPECLSINLKRY-KLRIATSD----------YLKKNEEIMKKYCGtDAKYSLVAVICHLgES 196
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1958787587 664 MGGGHYTAFAKNKDDG-KWYYFDDSSVSTASEDQI---VSKAAYVLFY 707
Cdd:cd02673   197 PYDGHYIAYTKELYNGsSWLYCSDDEIRPVSKNDVstnARSSGYLIFY 244
Peptidase_C19J cd02666
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
67-224 6.96e-04

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239131 [Multi-domain]  Cd Length: 343  Bit Score: 42.48  E-value: 6.96e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587  67 GLSNLGNTCFMNSAIQCLSNTPPLTEYFLN-DKYQEELNFDNPLGMR-GEIAKSYAE-------------LIKQMWSGKF 131
Cdd:cd02666     3 GLDNIGNTCYLNSLLQYFFTIKPLRDLVLNfDESKAELASDYPTERRiGGREVSRSElqrsnqfvyelrsLFNDLIHSNT 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587 132 SYVTPRAfktqvgRFApqFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDAD------------GRPDKVVAEEA 199
Cdd:cd02666    83 RSVTPSK------ELA--YLALRQQDVTECIDNVLFQLEVALEPISNAFAGPDTEDDkeqsdlikrlfsGKTKQQLVPES 154
                         170       180
                  ....*....|....*....|....*
gi 1958787587 200 WenhlkrNDSIIVDIFHGLFKSTLV 224
Cdd:cd02666   155 M------GNQPSVRTKTERFLSLLV 173
Peptidase_C19P cd02672
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
568-708 4.78e-03

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239137 [Multi-domain]  Cd Length: 268  Bit Score: 39.42  E-value: 4.78e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587 568 CIELFTTKEKlgaEDPWYCPNCKEHQQATKKLDLWSLPP----VLVVHLKRFSYSRYMR-------DKLDTLVDFPISDL 636
Cdd:cd02672   122 LLKRSLDLEK---VTKAWCDTCCKYQPLEQTTSIRHLPDilllVLVINLSVTNGEFDDInvvlpsgKVMQNKVSPKAIDH 198
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958787587 637 DmSEFLINPNAGPCRYNLIA-VSNHYGGMGGGHYTAF----AKNKDDGKWYYFDDSSVSTasedqiVSKAAYVLFYQ 708
Cdd:cd02672   199 D-KLVKNRGQESIYKYELVGyVCEINDSSRGQHNVVFvikvNEESTHGRWYLFNDFLVTP------VSELAYILLYQ 268
Peptidase_C19I cd02665
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
604-707 5.89e-03

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239130 [Multi-domain]  Cd Length: 228  Bit Score: 39.08  E-value: 5.89e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587 604 LPPVLVVHLKRFSYSRYMRDKLDTLVDFPisdldmSEFLINPnagpcrYNLIAVSNHYGGMGGGHYTAFAKNKDDGKWYY 683
Cdd:cd02665   128 LPPVLTFELSRFEFNQGRPEKIHDKLEFP------QIIQQVP------YELHAVLVHEGQANAGHYWAYIYKQSRQEWEK 195
                          90       100       110
                  ....*....|....*....|....*....|..
gi 1958787587 684 FDDSSVSTASEDQIVSKA--------AYVLFY 707
Cdd:cd02665   196 YNDISVTESSWEEVERDSfgggrnpsAYCLMY 227
UCH_1 pfam13423
Ubiquitin carboxyl-terminal hydrolase;
586-689 6.11e-03

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 463872 [Multi-domain]  Cd Length: 305  Bit Score: 39.56  E-value: 6.11e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587 586 CPNCKEHQQATKKLDLWSLPPVLVVHLKRfsYSRYMRDKLDTLVDFPIS-DLDMSEFLINPNAGpCRYNLIA-VSNHYGG 663
Cdd:pfam13423 196 CEKCKRYQPLESRRTVRNLPPVLSLNAAL--TNEEWRQLWKTPGWLPPEiGLTLSDDLQGDNEI-VKYELRGvVVHIGDS 272
                          90       100       110
                  ....*....|....*....|....*....|...
gi 1958787587 664 MGGGHYTAFAK-------NKDDGKWYYFDDSSV 689
Cdd:pfam13423 273 GTSGHLVSFVKvadseleDPTESQWYLFNDFLV 305
COG5077 COG5077
Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, ...
26-169 6.53e-03

Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227409 [Multi-domain]  Cd Length: 1089  Bit Score: 40.24  E-value: 6.53e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958787587   26 HDAAPINPGVKNSNYCLPSYT------------AYKNYDysepgrNNEQPGLCGLSNLGNTCFMNSAIQCLSntppLTEY 93
Cdd:COG5077    148 EPSPGRPPFLEEGTLVITVYVrvlkdptgvlwhSFLNYN------SKKETGYVGLRNQGATCYMNSLLQSLF----FIAK 217
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958787587   94 FLNDKYQeeLNFDNPLGmRGEIAKSYAELIKQMWSGKFSYVTPRAFKTQVGRFAPQFsgyQQQDCQELLAFLLDGL 169
Cdd:COG5077    218 FRKDVYG--IPTDHPRG-RDSVALALQRLFYNLQTGEEPVDTTELTRSFGWDSDDSF---MQHDIQEFNRVLQDNL 287
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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