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Conserved domains on  [gi|1953389047|ref|XP_038521942|]
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ubiquitin carboxyl-terminal hydrolase 1 isoform X4 [Canis lupus familiaris]

Protein Classification

ubiquitin carboxyl-terminal hydrolase; ubiquitin carboxyl-terminal hydrolase family protein( domain architecture ID 10245588)

ubiquitin carboxyl-terminal hydrolase is a C19 family peptidase that deubiquitinates polyubiquitinated target proteins; ubiquitin carboxyl-terminal hydrolase family protein is a C19 family peptidase that may deubiquitinate polyubiquitinated target proteins

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Peptidase_C19O cd02671
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
424-599 1.48e-111

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


:

Pssm-ID: 239136 [Multi-domain]  Cd Length: 332  Bit Score: 338.41  E-value: 1.48e-111
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953389047 424 ELVEKLFQGQLVLRTRCLECESLTERREDFQDISVPVQEDELSKVEESSEISPEPKTEMKTLRWAISQFASVERIVGEDK 503
Cdd:cd02671   121 ELVEKDFQGQLVLRTRCLECETFTERREDFQDISVPVQESELSKSEESSEISPDPKTEMKTLKWAISQFASVERIVGEDK 200
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953389047 504 YFCENCHHYTEAERSLLFDKMPEVITIHLKCFAASGLEFDCYgGGLSKINTPLLTPLKLSLEEWSTKPTNDSYGLFAVVM 583
Cdd:cd02671   201 YFCENCHHYTEAERSLLFDKLPEVITIHLKCFAANGSEFDCY-GGLSKVNTPLLTPLKLSLEEWSTKPKNDVYRLFAVVM 279
                         170
                  ....*....|....*.
gi 1953389047 584 HSGITISSGHYTASVK 599
Cdd:cd02671   280 HSGATISSGHYTAYVR 295
Peptidase_C19 super family cl02553
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
82-222 1.67e-11

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


The actual alignment was detected with superfamily member cd02657:

Pssm-ID: 470612 [Multi-domain]  Cd Length: 305  Bit Score: 65.43  E-value: 1.67e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953389047  82 GLNNLGNTCYLNSILQVLYFCPGFksgvkhlfniisrkKEALKDEanqkdKGSCKEDSLASYELICSLQSLIISVEQLQA 161
Cdd:cd02657     1 GLTNLGNTCYLNSTLQCLRSVPEL--------------RDALKNY-----NPARRGANQSSDNLTNALRDLFDTMDKKQE 61
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1953389047 162 SFllnpekytdelatQPRRLLNTLRELNPMYE------GYLQHDAQEVLQCILGNIQETCQLLKKEE 222
Cdd:cd02657    62 PV-------------PPIEFLQLLRMAFPQFAekqnqgGYAQQDAEECWSQLLSVLSQKLPGAGSKG 115
 
Name Accession Description Interval E-value
Peptidase_C19O cd02671
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
424-599 1.48e-111

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239136 [Multi-domain]  Cd Length: 332  Bit Score: 338.41  E-value: 1.48e-111
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953389047 424 ELVEKLFQGQLVLRTRCLECESLTERREDFQDISVPVQEDELSKVEESSEISPEPKTEMKTLRWAISQFASVERIVGEDK 503
Cdd:cd02671   121 ELVEKDFQGQLVLRTRCLECETFTERREDFQDISVPVQESELSKSEESSEISPDPKTEMKTLKWAISQFASVERIVGEDK 200
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953389047 504 YFCENCHHYTEAERSLLFDKMPEVITIHLKCFAASGLEFDCYgGGLSKINTPLLTPLKLSLEEWSTKPTNDSYGLFAVVM 583
Cdd:cd02671   201 YFCENCHHYTEAERSLLFDKLPEVITIHLKCFAANGSEFDCY-GGLSKVNTPLLTPLKLSLEEWSTKPKNDVYRLFAVVM 279
                         170
                  ....*....|....*.
gi 1953389047 584 HSGITISSGHYTASVK 599
Cdd:cd02671   280 HSGATISSGHYTAYVR 295
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
415-605 4.08e-27

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 112.15  E-value: 4.08e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953389047 415 NKGAEQIGFELVEKLFQGQLVLRTRCLECESLTERREDFQDISVPVQEDELSKVEESSEISPEpktemktlrwaisQFAS 494
Cdd:pfam00443 107 NGNHSTENESLITDLFRGQLKSRLKCLSCGEVSETFEPFSDLSLPIPGDSAELKTASLQICFL-------------QFSK 173
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953389047 495 VERIVGEDKYFCENCHHYTEAERSLLFDKMPEVITIHLKCFaasglEFDcyGGGLSKINTPLLTPLKLSLEEWSTKPTND 574
Cdd:pfam00443 174 LEELDDEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRF-----SYN--RSTWEKLNTEVEFPLELDLSRYLAEELKP 246
                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1953389047 575 ------SYGLFAVVMHSGiTISSGHYTASVKVTDLNS 605
Cdd:pfam00443 247 ktnnlqDYRLVAVVVHSG-SLSSGHYIAYIKAYENNR 282
Peptidase_C19A cd02657
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
82-222 1.67e-11

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239122 [Multi-domain]  Cd Length: 305  Bit Score: 65.43  E-value: 1.67e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953389047  82 GLNNLGNTCYLNSILQVLYFCPGFksgvkhlfniisrkKEALKDEanqkdKGSCKEDSLASYELICSLQSLIISVEQLQA 161
Cdd:cd02657     1 GLTNLGNTCYLNSTLQCLRSVPEL--------------RDALKNY-----NPARRGANQSSDNLTNALRDLFDTMDKKQE 61
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1953389047 162 SFllnpekytdelatQPRRLLNTLRELNPMYE------GYLQHDAQEVLQCILGNIQETCQLLKKEE 222
Cdd:cd02657    62 PV-------------PPIEFLQLLRMAFPQFAekqnqgGYAQQDAEECWSQLLSVLSQKLPGAGSKG 115
COG5077 COG5077
Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, ...
482-599 6.13e-08

Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227409 [Multi-domain]  Cd Length: 1089  Bit Score: 56.03  E-value: 6.13e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953389047  482 MKTLRWAISQFASVERIVGEDKYFCENcHHYTEAERSLLFDKMPEVITIHLKCFaasglEFDCYGGGLSKINTPLLTPLK 561
Cdd:COG5077    337 MKNLQESFRRYIQVETLDGDNRYNAEK-HGLQDAKKGVIFESLPPVLHLQLKRF-----EYDFERDMMVKINDRYEFPLE 410
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....
gi 1953389047  562 LSLEEWSTKPTNDS------YGLFAVVMHSGiTISSGHYTASVK 599
Cdd:COG5077    411 IDLLPFLDRDADKSensdavYVLYGVLVHSG-DLHEGHYYALLK 453
COG5533 COG5533
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
82-101 6.64e-04

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444284 [Multi-domain]  Cd Length: 284  Bit Score: 42.10  E-value: 6.64e-04
                          10        20
                  ....*....|....*....|
gi 1953389047  82 GLNNLGNTCYLNSILQVLYF 101
Cdd:COG5533     1 GLPNLGNTCFMNSVLQILAL 20
UCH_1 pfam13423
Ubiquitin carboxyl-terminal hydrolase;
81-112 2.66e-03

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 463872 [Multi-domain]  Cd Length: 305  Bit Score: 40.33  E-value: 2.66e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1953389047  81 VGLNNLGNTCYLNSILQVLYFCPGF-KSGVKHL 112
Cdd:pfam13423   1 SGLETHIPNSYTNSLLQLLRFIPPLrNLALSHL 33
 
Name Accession Description Interval E-value
Peptidase_C19O cd02671
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
424-599 1.48e-111

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239136 [Multi-domain]  Cd Length: 332  Bit Score: 338.41  E-value: 1.48e-111
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953389047 424 ELVEKLFQGQLVLRTRCLECESLTERREDFQDISVPVQEDELSKVEESSEISPEPKTEMKTLRWAISQFASVERIVGEDK 503
Cdd:cd02671   121 ELVEKDFQGQLVLRTRCLECETFTERREDFQDISVPVQESELSKSEESSEISPDPKTEMKTLKWAISQFASVERIVGEDK 200
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953389047 504 YFCENCHHYTEAERSLLFDKMPEVITIHLKCFAASGLEFDCYgGGLSKINTPLLTPLKLSLEEWSTKPTNDSYGLFAVVM 583
Cdd:cd02671   201 YFCENCHHYTEAERSLLFDKLPEVITIHLKCFAANGSEFDCY-GGLSKVNTPLLTPLKLSLEEWSTKPKNDVYRLFAVVM 279
                         170
                  ....*....|....*.
gi 1953389047 584 HSGITISSGHYTASVK 599
Cdd:cd02671   280 HSGATISSGHYTAYVR 295
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
425-604 3.70e-31

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 122.21  E-value: 3.70e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953389047 425 LVEKLFQGQLVLRTRCLECESLTERREDFQDISVPVqedelskveesseisPEPKTEMKTLRWAISQFASVERIVGEDKY 504
Cdd:cd02257    56 LIHDLFGGKLESTIVCLECGHESVSTEPELFLSLPL---------------PVKGLPQVSLEDCLEKFFKEEILEGDNCY 120
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953389047 505 FCEnCHHYTEAERSLLFDKMPEVITIHLKCFaasglEFDCYGGGlSKINTPLLTPLKLSLEEWSTKPTNDS--------Y 576
Cdd:cd02257   121 KCE-KKKKQEATKRLKIKKLPPVLIIHLKRF-----SFNEDGTK-EKLNTKVSFPLELDLSPYLSEGEKDSdsdngsykY 193
                         170       180
                  ....*....|....*....|....*...
gi 1953389047 577 GLFAVVMHSGITISSGHYTASVKVTDLN 604
Cdd:cd02257   194 ELVAVVVHSGTSADSGHYVAYVKDPSDG 221
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
415-605 4.08e-27

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 112.15  E-value: 4.08e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953389047 415 NKGAEQIGFELVEKLFQGQLVLRTRCLECESLTERREDFQDISVPVQEDELSKVEESSEISPEpktemktlrwaisQFAS 494
Cdd:pfam00443 107 NGNHSTENESLITDLFRGQLKSRLKCLSCGEVSETFEPFSDLSLPIPGDSAELKTASLQICFL-------------QFSK 173
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953389047 495 VERIVGEDKYFCENCHHYTEAERSLLFDKMPEVITIHLKCFaasglEFDcyGGGLSKINTPLLTPLKLSLEEWSTKPTND 574
Cdd:pfam00443 174 LEELDDEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRF-----SYN--RSTWEKLNTEVEFPLELDLSRYLAEELKP 246
                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1953389047 575 ------SYGLFAVVMHSGiTISSGHYTASVKVTDLNS 605
Cdd:pfam00443 247 ktnnlqDYRLVAVVVHSG-SLSSGHYIAYIKAYENNR 282
Peptidase_C19G cd02663
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
426-603 1.34e-25

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239128 [Multi-domain]  Cd Length: 300  Bit Score: 107.40  E-value: 1.34e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953389047 426 VEKLFQGQLVLRTRCLECESLTERREDFQDISVpvqedelsKVEESSEISpepktemKTLRwaisQFASVERIVGEDKYF 505
Cdd:cd02663   109 VHEIFQGILTNETRCLTCETVSSRDETFLDLSI--------DVEQNTSIT-------SCLR----QFSATETLCGRNKFY 169
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953389047 506 CENCHHYTEAERSLLFDKMPEVITIHLKCFAasgleFDCYGGGLSKINTPLLTPLKLSLEEWSTKPTNDS--YGLFAVVM 583
Cdd:cd02663   170 CDECCSLQEAEKRMKIKKLPKILALHLKRFK-----YDEQLNRYIKLFYRVVFPLELRLFNTTDDAENPDrlYELVAVVV 244
                         170       180
                  ....*....|....*....|
gi 1953389047 584 HSGITISSGHYTASVKVTDL 603
Cdd:cd02663   245 HIGGGPNHGHYVSIVKSHGG 264
Peptidase_C19E cd02661
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
425-599 7.78e-24

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239126 [Multi-domain]  Cd Length: 304  Bit Score: 102.35  E-value: 7.78e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953389047 425 LVEKLFQGQLVLRTRCLECESLTERREDFQDISVpvqedELSKVEesseispepktemkTLRWAISQFASVERIVGEDKY 504
Cdd:cd02661   123 LVQQIFGGYLRSQVKCLNCKHVSNTYDPFLDLSL-----DIKGAD--------------SLEDALEQFTKPEQLDGENKY 183
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953389047 505 FCENCHHYTEAERSLLFDKMPEVITIHLKCFAasglefdcyGGGLSKINTPLLTPLKLSLEEWSTKPTNDS--YGLFAVV 582
Cdd:cd02661   184 KCERCKKKVKASKQLTIHRAPNVLTIHLKRFS---------NFRGGKINKQISFPETLDLSPYMSQPNDGPlkYKLYAVL 254
                         170
                  ....*....|....*..
gi 1953389047 583 MHSGITISSGHYTASVK 599
Cdd:cd02661   255 VHSGFSPHSGHYYCYVK 271
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
425-600 4.40e-22

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 95.43  E-value: 4.40e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953389047 425 LVEKLFQGQLVLRTRCLECESLTERREDFQDISVPvqedelskVEESSEISPEPktemkTLRWAISQFASVERIVGEDKY 504
Cdd:cd02674    39 IIVDLFQGQLKSRLTCLTCGKTSTTFEPFTYLSLP--------IPSGSGDAPKV-----TLEDCLRLFTKEETLDGDNAW 105
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953389047 505 FCENCHHYTEAERSLLFDKMPEVITIHLKcfaasglEFDCYGGGLSKINTPLLTPLK-LSLEEW---STKPTNDSYGLFA 580
Cdd:cd02674   106 KCPKCKKKRKATKKLTISRLPKVLIIHLK-------RFSFSRGSTRKLTTPVTFPLNdLDLTPYvdtRSFTGPFKYDLYA 178
                         170       180
                  ....*....|....*....|
gi 1953389047 581 VVMHSGiTISSGHYTASVKV 600
Cdd:cd02674   179 VVNHYG-SLNGGHYTAYCKN 197
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
425-600 1.98e-21

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 94.76  E-value: 1.98e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953389047 425 LVEKLFQGQLVLRTRCLECESLTERREDFQDISVPvqedelskveesseiSPEPKTEMKTLRWAISQFASVERIVGEDKY 504
Cdd:cd02667    68 FIDSIFGGELTSTIMCESCGTVSLVYEPFLDLSLP---------------RSDEIKSECSIESCLKQFTEVEILEGNNKF 132
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953389047 505 FCENChhyTEAERSLLFDKMPEVITIHLKCFAASGLefdcygGGLSKINTPLLTPLKLSLEEW-------STKPTNDSYG 577
Cdd:cd02667   133 ACENC---TKAKKQYLISKLPPVLVIHLKRFQQPRS------ANLRKVSRHVSFPEILDLAPFcdpkcnsSEDKSSVLYR 203
                         170       180
                  ....*....|....*....|...
gi 1953389047 578 LFAVVMHSGiTISSGHYTASVKV 600
Cdd:cd02667   204 LYGVVEHSG-TMRSGHYVAYVKV 225
peptidase_C19C cd02659
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
416-604 5.09e-21

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239124 [Multi-domain]  Cd Length: 334  Bit Score: 94.63  E-value: 5.09e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953389047 416 KGAEQIGfeLVEKLFQGQLVLRTRCLECESLTERREDFQDISVPVqedelskveesseispepkTEMKTLRWAISQFASV 495
Cdd:cd02659   105 KGTGQEG--LIKNLFGGKLVNYIICKECPHESEREEYFLDLQVAV-------------------KGKKNLEESLDAYVQG 163
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953389047 496 ERIVGEDKYFCENCHHYTEAERSLLFDKMPEVITIHLKCFaasglEFDCYGGGLSKINTPLLTPLKLSLE---------- 565
Cdd:cd02659   164 ETLEGDNKYFCEKCGKKVDAEKGVCFKKLPPVLTLQLKRF-----EFDFETMMRIKINDRFEFPLELDMEpytekglakk 238
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1953389047 566 EWSTKPTNDS---YGLFAVVMHSGiTISSGHYTASVKVTDLN 604
Cdd:cd02659   239 EGDSEKKDSEsyiYELHGVLVHSG-DAHGGHYYSYIKDRDDG 279
Peptidase_C19L cd02668
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
425-599 1.67e-20

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239133 [Multi-domain]  Cd Length: 324  Bit Score: 92.87  E-value: 1.67e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953389047 425 LVEKLFQGQLVLRTRCLECESLTERREDFQDISVPVQEdelskveesseispepkteMKTLRWAISQFASVERIVGEDKY 504
Cdd:cd02668   117 IVQDLFRGEYSYVTQCSKCGRESSLPSKFYELELQLKG-------------------HKTLEECIDEFLKEEQLTGDNQY 177
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953389047 505 FCENCHHYTEAERSLLFDKMPEVITIHLKCFAasgleFDCYGGGLSKINTPLLTPLKLSLEEWS--TKPTNDSYGLFAVV 582
Cdd:cd02668   178 FCESCNSKTDATRRIRLTTLPPTLNFQLLRFV-----FDRKTGAKKKLNASISFPEILDMGEYLaeSDEGSYVYELSGVL 252
                         170
                  ....*....|....*..
gi 1953389047 583 MHSGITISSGHYTASVK 599
Cdd:cd02668   253 IHQGVSAYSGHYIAHIK 269
Peptidase_C19D cd02660
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
426-602 1.22e-19

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239125 [Multi-domain]  Cd Length: 328  Bit Score: 90.51  E-value: 1.22e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953389047 426 VEKLFQGQLVLRTRCLECESLTERREDFQDISVPVQEdelsKVEESSEISPEPKTEMKTLRWAISQFASVERiVGEDKYF 505
Cdd:cd02660   123 IHQTFSGSLQSSVTCQRCGGVSTTVDPFLDLSLDIPN----KSTPSWALGESGVSGTPTLSDCLDRFTRPEK-LGDFAYK 197
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953389047 506 CENCHHYTEAERSLLFDKMPEVITIHLKCFAASGlefdcyGGGLSKINTPLLTPLKLSLEEWSTKPTNDS---------- 575
Cdd:cd02660   198 CSGCGSTQEATKQLSIKKLPPVLCFQLKRFEHSL------NKTSRKIDTYVQFPLELNMTPYTSSSIGDTqdsnsldpdy 271
                         170       180
                  ....*....|....*....|....*...
gi 1953389047 576 -YGLFAVVMHSGiTISSGHYTASVKVTD 602
Cdd:cd02660   272 tYDLFAVVVHKG-TLDTGHYTAYCRQGD 298
Peptidase_C19H cd02664
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
425-594 2.19e-13

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239129 [Multi-domain]  Cd Length: 327  Bit Score: 71.75  E-value: 2.19e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953389047 425 LVEKLFQGQLVLRTRCLEC--ESLTERREDFQDISVPVQEDelskveesseispepktemktlrwAISQFASVERIVGED 502
Cdd:cd02664    98 LIEKMFGGKLSTTIRCLNCnsTSARTERFRDLDLSFPSVQD------------------------LLNYFLSPEKLTGDN 153
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953389047 503 KYFCENCHHYTEAERSLLFDKMPEVITIHLKCFaasglEFDCYGGGLSKINTPLLTPLKLSL-------------EEWST 569
Cdd:cd02664   154 QYYCEKCASLQDAEKEMKVTGAPEYLILTLLRF-----SYDQKTHVREKIMDNVSINEVLSLpvrveskssesplEKKEE 228
                         170       180       190
                  ....*....|....*....|....*....|...
gi 1953389047 570 KPTNDS--------YGLFAVVMHSGITISSGHY 594
Cdd:cd02664   229 ESGDDGelvtrqvhYRLYAVVVHSGYSSESGHY 261
Peptidase_C19A cd02657
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
82-222 1.67e-11

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239122 [Multi-domain]  Cd Length: 305  Bit Score: 65.43  E-value: 1.67e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953389047  82 GLNNLGNTCYLNSILQVLYFCPGFksgvkhlfniisrkKEALKDEanqkdKGSCKEDSLASYELICSLQSLIISVEQLQA 161
Cdd:cd02657     1 GLTNLGNTCYLNSTLQCLRSVPEL--------------RDALKNY-----NPARRGANQSSDNLTNALRDLFDTMDKKQE 61
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1953389047 162 SFllnpekytdelatQPRRLLNTLRELNPMYE------GYLQHDAQEVLQCILGNIQETCQLLKKEE 222
Cdd:cd02657    62 PV-------------PPIEFLQLLRMAFPQFAekqnqgGYAQQDAEECWSQLLSVLSQKLPGAGSKG 115
Peptidase_C19B cd02658
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
437-599 3.76e-10

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239123 [Multi-domain]  Cd Length: 311  Bit Score: 61.57  E-value: 3.76e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953389047 437 RTRCLECESLTERREDFQDISVPVQEDELSKVEESSEISPEpkTEMKTlrwAISQFASVERIvgedKYFCENCHHYTEAE 516
Cdd:cd02658   137 RLECLSCKKVKYTSELSEILSLPVPKDEATEKEEGELVYEP--VPLED---CLKAYFAPETI----EDFCSTCKEKTTAT 207
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953389047 517 RSLLFDKMPEVITIHLKCFAASglefdcYGGGLSKINTPLLTPLKLsleewstkpTNDSYGLFAVVMHSGITISSGHYTA 596
Cdd:cd02658   208 KTTGFKTFPDYLVINMKRFQLL------ENWVPKKLDVPIDVPEEL---------GPGKYELIAFISHKGTSVHSGHYVA 272

                  ...
gi 1953389047 597 SVK 599
Cdd:cd02658   273 HIK 275
COG5077 COG5077
Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, ...
482-599 6.13e-08

Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227409 [Multi-domain]  Cd Length: 1089  Bit Score: 56.03  E-value: 6.13e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953389047  482 MKTLRWAISQFASVERIVGEDKYFCENcHHYTEAERSLLFDKMPEVITIHLKCFaasglEFDCYGGGLSKINTPLLTPLK 561
Cdd:COG5077    337 MKNLQESFRRYIQVETLDGDNRYNAEK-HGLQDAKKGVIFESLPPVLHLQLKRF-----EYDFERDMMVKINDRYEFPLE 410
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....
gi 1953389047  562 LSLEEWSTKPTNDS------YGLFAVVMHSGiTISSGHYTASVK 599
Cdd:COG5077    411 IDLLPFLDRDADKSensdavYVLYGVLVHSG-DLHEGHYYALLK 453
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
82-599 8.65e-08

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 55.27  E-value: 8.65e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953389047  82 GLNNLGNTCYLNSILQVLYFCPGFKSgvkhlfNIISRKKEALKDEANQKDKGSckedSLASyelicSLQSLIISVeqlqa 161
Cdd:COG5560   267 GLRNLGNTCYMNSALQCLMHTWELRD------YFLSDEYEESINEENPLGMHG----SVAS-----AYADLIKQL----- 326
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953389047 162 sfllnpekYTDEL-ATQPRRLLNTLRELNPMYEGYLQHDAQEVLQCILGNIQETCQLLKKEEVKNVVELSTKIEEKPHQK 240
Cdd:COG5560   327 --------YDGNLhAFTPSGFKKTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDVVVKKK 398
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953389047 241 EEmsginsiemdnlrpsEDYKEKLpKGNGKRKSDTEFGnMKKKVKVSKEHQSLeenqrqtrskrKATGD-----TLEIPS 315
Cdd:COG5560   399 AK---------------ECWWEHL-KRNDSIITDLFQG-MYKSTLTCPGCGSV-----------SITFDpfmdlTLPLPV 450
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953389047 316 K--------IIPkcvsenesarPSQKKSRVKINWLKPAT-----KQPSILSKFCSLGKITTNQ----GSKEQLKENEYDL 378
Cdd:COG5560   451 SmvwkhtivVFP----------ESGRRQPLKIELDASSTirglkKLVDAEYGKLGCFEIKVMCiyygGNYNMLEPADKVL 520
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953389047 379 EEDLGKCE-------NDNTTNGCELESP-----------GDNVKPVNVNEVKPINKGAEQIGFELVEKLFQGQL-----V 435
Cdd:COG5560   521 LQDIPQTDfvylyetNDNGIEVPVVHLRiekgykskrlfGDPFLQLNVLIKASIYDKLVKEFEELLVLVEMKKTdvdlvS 600
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953389047 436 LRTRCLECES--------LTER---REDFQDISVPVQEDE------------LSKVEESSEISPEPKTEMK----TLRWA 488
Cdd:COG5560   601 EQVRLLREESspsswlklETEIdtkREEQVEEEGQMNFNDavvisceweekrYLSLFSYDPLWTIREIGAAertiTLQDC 680
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953389047 489 ISQFASVERIVGEDKYFCENCHHYTEAERSLLFDKMPEVITIHLKCFaASGLEFDcyggglSKINTPLLTP---LKLSLE 565
Cdd:COG5560   681 LNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRF-SSVRSFR------DKIDDLVEYPiddLDLSGV 753
                         570       580       590
                  ....*....|....*....|....*....|....
gi 1953389047 566 EWSTKPTNDSYGLFAVVMHSGITiSSGHYTASVK 599
Cdd:COG5560   754 EYMVDDPRLIYDLYAVDNHYGGL-SGGHYTAYAR 786
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
82-101 3.05e-06

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 49.02  E-value: 3.05e-06
                          10        20
                  ....*....|....*....|
gi 1953389047  82 GLNNLGNTCYLNSILQVLYF 101
Cdd:cd02257     1 GLNNLGNTCYLNSVLQALFS 20
Peptidase_C19J cd02666
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
81-222 7.32e-06

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239131 [Multi-domain]  Cd Length: 343  Bit Score: 48.64  E-value: 7.32e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953389047  81 VGLNNLGNTCYLNSILQvLYFCpgfksgVKHLFNIISRKKEALKDEANQKDKG-SCKEDSLASYELICSLQsliiSVEQL 159
Cdd:cd02666     2 AGLDNIGNTCYLNSLLQ-YFFT------IKPLRDLVLNFDESKAELASDYPTErRIGGREVSRSELQRSNQ----FVYEL 70
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1953389047 160 qaSFLLNPEKYTDELATQPRRLLntlrelnpmyeGYLQHDAQEVLQCIlGNIQetCQLLKKEE 222
Cdd:cd02666    71 --RSLFNDLIHSNTRSVTPSKEL-----------AYLALRQQDVTECI-DNVL--FQLEVALE 117
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
82-156 1.41e-05

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 47.38  E-value: 1.41e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1953389047  82 GLNNLGNTCYLNSILQVLYFCPG----FKSGVKHLFNIISRKKEALKDeANQKDkgsckedslaSYELICSLQSLIISV 156
Cdd:cd02667     1 GLSNLGNTCFFNAVMQNLSQTPAlrelLSETPKELFSQVCRKAPQFKG-YQQQD----------SHELLRYLLDGLRTF 68
Peptidase_C19B cd02658
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
82-107 2.02e-05

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239123 [Multi-domain]  Cd Length: 311  Bit Score: 46.93  E-value: 2.02e-05
                          10        20
                  ....*....|....*....|....*.
gi 1953389047  82 GLNNLGNTCYLNSILQVLYFCPGFKS 107
Cdd:cd02658     1 GLRNLGNSCYLNSVLQVLFSIPSFQW 26
Peptidase_C19F cd02662
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
82-117 4.76e-05

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239127 [Multi-domain]  Cd Length: 240  Bit Score: 45.43  E-value: 4.76e-05
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1953389047  82 GLNNLGNTCYLNSILQVLYFCPGFksgVKHLFNIIS 117
Cdd:cd02662     1 GLVNLGNTCFMNSVLQALASLPSL---IEYLEEFLE 33
Peptidase_C19L cd02668
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
82-228 1.70e-04

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239133 [Multi-domain]  Cd Length: 324  Bit Score: 43.95  E-value: 1.70e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953389047  82 GLNNLGNTCYLNSILQVLYFCPGFKSGVkHLFNIisrkkealKDEANQKdkgSCKEDSLASYELICslqsliisvEQLQA 161
Cdd:cd02668     1 GLKNLGATCYVNSFLQLWFMNLEFRKAV-YECNS--------TEDAELK---NMPPDKPHEPQTII---------DQLQL 59
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953389047 162 SFLL---NPEKYTDelatqPRRLLNTLRELNPmyegyLQHDAQEVLQCILGNIQETCQLLKKEEVKNVVE 228
Cdd:cd02668    60 IFAQlqfGNRSVVD-----PSGFVKALGLDTG-----QQQDAQEFSKLFLSLLEAKLSKSKNPDLKNIVQ 119
Peptidase_C19F cd02662
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
429-596 1.81e-04

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239127 [Multi-domain]  Cd Length: 240  Bit Score: 43.51  E-value: 1.81e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953389047 429 LFQGQLVLRTRCLECESLTERREDFQDI---SVPVQEDELSKVEESseispepktemktlrwAISQFASVERIvgeDKYF 505
Cdd:cd02662    55 PFDGLLASRIVCLQCGESSKVRYESFTMlslPVPNQSSGSGTTLEH----------------CLDDFLSTEII---DDYK 115
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953389047 506 CENChhyteaerSLLFDKMPEVITIHLkcfaaSGLEFDCYGGGL---SKINTPLLTPLKLsleewstkptndsYGLFAVV 582
Cdd:cd02662   116 CDRC--------QTVIVRLPQILCIHL-----SRSVFDGRGTSTknsCKVSFPERLPKVL-------------YRLRAVV 169
                         170
                  ....*....|....
gi 1953389047 583 MHSGiTISSGHYTA 596
Cdd:cd02662   170 VHYG-SHSSGHYVC 182
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
82-99 1.91e-04

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 43.43  E-value: 1.91e-04
                          10
                  ....*....|....*...
gi 1953389047  82 GLNNLGNTCYLNSILQVL 99
Cdd:cd02674     1 GLRNLGNTCYMNSILQCL 18
COG5533 COG5533
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
82-101 6.64e-04

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444284 [Multi-domain]  Cd Length: 284  Bit Score: 42.10  E-value: 6.64e-04
                          10        20
                  ....*....|....*....|
gi 1953389047  82 GLNNLGNTCYLNSILQVLYF 101
Cdd:COG5533     1 GLPNLGNTCFMNSVLQILAL 20
COG5077 COG5077
Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, ...
80-109 8.96e-04

Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227409 [Multi-domain]  Cd Length: 1089  Bit Score: 42.55  E-value: 8.96e-04
                           10        20        30
                   ....*....|....*....|....*....|
gi 1953389047   80 FVGLNNLGNTCYLNSILQVLYFCPGFKSGV 109
Cdd:COG5077    193 YVGLRNQGATCYMNSLLQSLFFIAKFRKDV 222
UCH_1 pfam13423
Ubiquitin carboxyl-terminal hydrolase;
425-602 1.64e-03

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 463872 [Multi-domain]  Cd Length: 305  Bit Score: 41.10  E-value: 1.64e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953389047 425 LVEKLFQGQLVLRTRCLECESLTERREdfqdiSVPVQEDELSKVEESSEISPEPKTemktlrwaISQF--ASVERIVGEd 502
Cdd:pfam13423 127 PLEQLFGIDAETTIRCSNCGHESVRES-----STHVLDLIYPRKPSSNNKKPPNQT--------FSSIlkSSLERETTT- 192
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953389047 503 KYFCENCHHYTEAERSLLFDKMPEVITIHLKCFAASGLEFDCYGGGLskintplltPLKLSLEEWSTKPTNDS---YGLF 579
Cdd:pfam13423 193 KAWCEKCKRYQPLESRRTVRNLPPVLSLNAALTNEEWRQLWKTPGWL---------PPEIGLTLSDDLQGDNEivkYELR 263
                         170       180
                  ....*....|....*....|...
gi 1953389047 580 AVVMHSGITISSGHYTASVKVTD 602
Cdd:pfam13423 264 GVVVHIGDSGTSGHLVSFVKVAD 286
Peptidase_C19H cd02664
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
82-100 1.91e-03

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239129 [Multi-domain]  Cd Length: 327  Bit Score: 40.94  E-value: 1.91e-03
                          10
                  ....*....|....*....
gi 1953389047  82 GLNNLGNTCYLNSILQVLY 100
Cdd:cd02664     1 GLINLGNTCYMNSVLQALF 19
UCH_1 pfam13423
Ubiquitin carboxyl-terminal hydrolase;
81-112 2.66e-03

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 463872 [Multi-domain]  Cd Length: 305  Bit Score: 40.33  E-value: 2.66e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1953389047  81 VGLNNLGNTCYLNSILQVLYFCPGF-KSGVKHL 112
Cdd:pfam13423   1 SGLETHIPNSYTNSLLQLLRFIPPLrNLALSHL 33
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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