NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1953319091|ref|XP_038515617|]
View 

protein THEMIS2 isoform X4 [Canis lupus familiaris]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
CABIT super family cl28785
Cell-cycle sustaining, positive selection,; The 'CABIT' domain (for 'cysteine-containing, all- ...
265-514 5.99e-26

Cell-cycle sustaining, positive selection,; The 'CABIT' domain (for 'cysteine-containing, all- in Themis') is found in a newly identified gene family that has three mammalian homologs (Themis, Icb1 and 9130404H23Rik) that encode proteins with two CABIT domains and a highly conserved proline-rich region. In contrast, Fam59A, Fam59B and related proteins from mammals to cnidarians, including the insect Serrano proteins, have a single copy of the CABIT domain, a proline-rich region and often a C-terminal SAM (sterile-motif) domain. Multiple-sequence alignment has predicted that the CABIT domain adopts an all-strand structure with at least 12 strands, ie a dyad of six-stranded beta-barrel units. The CABIT domain contains a nearly absolutely conserved cysteine residue which is likely to be central to its function. CABIT domain proteins function downstream of tyrosine kinase signalling and interact with GRB2.


The actual alignment was detected with superfamily member pfam12736:

Pssm-ID: 463686  Cd Length: 261  Bit Score: 107.53  E-value: 5.99e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953319091 265 ILEIPEGpsIFLSPWAGSLHKGQKLCIHGLasPPWRVLV----STKGRKIPRHFMVSGAYQGKLRRRPRE--FPTAYDLL 338
Cdd:pfam12736   4 VVKVTSG--IYGEGSVYCLSKGDVLLIHGL--KQAKKVVaqevEEGRGVVGPKLLIPLSYPGLFKLLADEgpFESVEELA 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953319091 339 GALqpgqPLRVVATKD---------CEGEGVESPGFTSLAVGDRLEVLRSGQAHGAEGRD-----IDVLVCQRLSDKAee 404
Cdd:pfam12736  80 RSF----PIRVLAKEEgpdsvgvpmFRSSDDMSLANFTLQAGEELTLLGVEESSGGKEELasvtvGDYLICLVNQTGE-- 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953319091 405 eeeeenedvedddQILLPLYFSGSFVEEMNDSRRYSLEDLTAHFSLPCEVKVVAKDSshPADPLPSF-PGLRLEEKIMEP 483
Cdd:pfam12736 154 -------------SVLLPLSCRGRFSEECEDEGEYTLREIVEKFKLPLNVKVVVGDP--PRGDLDAFtGELRLEPVYEEQ 218
                         250       260       270
                  ....*....|....*....|....*....|....*
gi 1953319091 484 FLVVSL----NSNPEMCFEIpPRWLDLTVVEAEGQ 514
Cdd:pfam12736 219 AVVASPllipVPFRKLEVPI-PSDLDVEVAEVTSA 252
CABIT super family cl28785
Cell-cycle sustaining, positive selection,; The 'CABIT' domain (for 'cysteine-containing, all- ...
18-236 1.84e-18

Cell-cycle sustaining, positive selection,; The 'CABIT' domain (for 'cysteine-containing, all- in Themis') is found in a newly identified gene family that has three mammalian homologs (Themis, Icb1 and 9130404H23Rik) that encode proteins with two CABIT domains and a highly conserved proline-rich region. In contrast, Fam59A, Fam59B and related proteins from mammals to cnidarians, including the insect Serrano proteins, have a single copy of the CABIT domain, a proline-rich region and often a C-terminal SAM (sterile-motif) domain. Multiple-sequence alignment has predicted that the CABIT domain adopts an all-strand structure with at least 12 strands, ie a dyad of six-stranded beta-barrel units. The CABIT domain contains a nearly absolutely conserved cysteine residue which is likely to be central to its function. CABIT domain proteins function downstream of tyrosine kinase signalling and interact with GRB2.


The actual alignment was detected with superfamily member pfam12736:

Pssm-ID: 463686  Cd Length: 261  Bit Score: 85.58  E-value: 1.84e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953319091  18 LPRVLRVCSGVYFQGSIYeisgnecCLSTGDLIKVTQVRLQK-VVCE-----NPGTGQTMEITPDFHGYFSPLTGRQSYG 91
Cdd:pfam12736   1 LPQVVKVTSGIYGEGSVY-------CLSKGDVLLIHGLKQAKkVVAQeveegRGVVGPKLLIPLSYPGLFKLLADEGPFE 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953319091  92 TLEELLSA--------ATQCSKTLPICFMSTHRITTEARVVPEDQPLKLEAVETYHGTYRA----------RCVLDTETH 153
Cdd:pfam12736  74 SVEELARSfpirvlakEEGPDSVGVPMFRSSDDMSLANFTLQAGEELTLLGVEESSGGKEElasvtvgdylICLVNQTGE 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953319091 154 PFIlhLPLSQKGPFWEWKPGAPRPLLKAL--QDPALSNLLFTCPTLPW-------RTLILRPQYEVQAIMHM-------- 216
Cdd:pfam12736 154 SVL--LPLSCRGRFSEECEDEGEYTLREIveKFKLPLNVKVVVGDPPRgdldaftGELRLEPVYEEQAVVASpllipvpf 231
                         250       260
                  ....*....|....*....|
gi 1953319091 217 RRTIVKIPSSLEVDVEDVTS 236
Cdd:pfam12736 232 RKLEVPIPSDLDVEVAEVTS 251
 
Name Accession Description Interval E-value
CABIT pfam12736
Cell-cycle sustaining, positive selection,; The 'CABIT' domain (for 'cysteine-containing, all- ...
265-514 5.99e-26

Cell-cycle sustaining, positive selection,; The 'CABIT' domain (for 'cysteine-containing, all- in Themis') is found in a newly identified gene family that has three mammalian homologs (Themis, Icb1 and 9130404H23Rik) that encode proteins with two CABIT domains and a highly conserved proline-rich region. In contrast, Fam59A, Fam59B and related proteins from mammals to cnidarians, including the insect Serrano proteins, have a single copy of the CABIT domain, a proline-rich region and often a C-terminal SAM (sterile-motif) domain. Multiple-sequence alignment has predicted that the CABIT domain adopts an all-strand structure with at least 12 strands, ie a dyad of six-stranded beta-barrel units. The CABIT domain contains a nearly absolutely conserved cysteine residue which is likely to be central to its function. CABIT domain proteins function downstream of tyrosine kinase signalling and interact with GRB2.


Pssm-ID: 463686  Cd Length: 261  Bit Score: 107.53  E-value: 5.99e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953319091 265 ILEIPEGpsIFLSPWAGSLHKGQKLCIHGLasPPWRVLV----STKGRKIPRHFMVSGAYQGKLRRRPRE--FPTAYDLL 338
Cdd:pfam12736   4 VVKVTSG--IYGEGSVYCLSKGDVLLIHGL--KQAKKVVaqevEEGRGVVGPKLLIPLSYPGLFKLLADEgpFESVEELA 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953319091 339 GALqpgqPLRVVATKD---------CEGEGVESPGFTSLAVGDRLEVLRSGQAHGAEGRD-----IDVLVCQRLSDKAee 404
Cdd:pfam12736  80 RSF----PIRVLAKEEgpdsvgvpmFRSSDDMSLANFTLQAGEELTLLGVEESSGGKEELasvtvGDYLICLVNQTGE-- 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953319091 405 eeeeenedvedddQILLPLYFSGSFVEEMNDSRRYSLEDLTAHFSLPCEVKVVAKDSshPADPLPSF-PGLRLEEKIMEP 483
Cdd:pfam12736 154 -------------SVLLPLSCRGRFSEECEDEGEYTLREIVEKFKLPLNVKVVVGDP--PRGDLDAFtGELRLEPVYEEQ 218
                         250       260       270
                  ....*....|....*....|....*....|....*
gi 1953319091 484 FLVVSL----NSNPEMCFEIpPRWLDLTVVEAEGQ 514
Cdd:pfam12736 219 AVVASPllipVPFRKLEVPI-PSDLDVEVAEVTSA 252
CABIT pfam12736
Cell-cycle sustaining, positive selection,; The 'CABIT' domain (for 'cysteine-containing, all- ...
18-236 1.84e-18

Cell-cycle sustaining, positive selection,; The 'CABIT' domain (for 'cysteine-containing, all- in Themis') is found in a newly identified gene family that has three mammalian homologs (Themis, Icb1 and 9130404H23Rik) that encode proteins with two CABIT domains and a highly conserved proline-rich region. In contrast, Fam59A, Fam59B and related proteins from mammals to cnidarians, including the insect Serrano proteins, have a single copy of the CABIT domain, a proline-rich region and often a C-terminal SAM (sterile-motif) domain. Multiple-sequence alignment has predicted that the CABIT domain adopts an all-strand structure with at least 12 strands, ie a dyad of six-stranded beta-barrel units. The CABIT domain contains a nearly absolutely conserved cysteine residue which is likely to be central to its function. CABIT domain proteins function downstream of tyrosine kinase signalling and interact with GRB2.


Pssm-ID: 463686  Cd Length: 261  Bit Score: 85.58  E-value: 1.84e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953319091  18 LPRVLRVCSGVYFQGSIYeisgnecCLSTGDLIKVTQVRLQK-VVCE-----NPGTGQTMEITPDFHGYFSPLTGRQSYG 91
Cdd:pfam12736   1 LPQVVKVTSGIYGEGSVY-------CLSKGDVLLIHGLKQAKkVVAQeveegRGVVGPKLLIPLSYPGLFKLLADEGPFE 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953319091  92 TLEELLSA--------ATQCSKTLPICFMSTHRITTEARVVPEDQPLKLEAVETYHGTYRA----------RCVLDTETH 153
Cdd:pfam12736  74 SVEELARSfpirvlakEEGPDSVGVPMFRSSDDMSLANFTLQAGEELTLLGVEESSGGKEElasvtvgdylICLVNQTGE 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953319091 154 PFIlhLPLSQKGPFWEWKPGAPRPLLKAL--QDPALSNLLFTCPTLPW-------RTLILRPQYEVQAIMHM-------- 216
Cdd:pfam12736 154 SVL--LPLSCRGRFSEECEDEGEYTLREIveKFKLPLNVKVVVGDPPRgdldaftGELRLEPVYEEQAVVASpllipvpf 231
                         250       260
                  ....*....|....*....|
gi 1953319091 217 RRTIVKIPSSLEVDVEDVTS 236
Cdd:pfam12736 232 RKLEVPIPSDLDVEVAEVTS 251
 
Name Accession Description Interval E-value
CABIT pfam12736
Cell-cycle sustaining, positive selection,; The 'CABIT' domain (for 'cysteine-containing, all- ...
265-514 5.99e-26

Cell-cycle sustaining, positive selection,; The 'CABIT' domain (for 'cysteine-containing, all- in Themis') is found in a newly identified gene family that has three mammalian homologs (Themis, Icb1 and 9130404H23Rik) that encode proteins with two CABIT domains and a highly conserved proline-rich region. In contrast, Fam59A, Fam59B and related proteins from mammals to cnidarians, including the insect Serrano proteins, have a single copy of the CABIT domain, a proline-rich region and often a C-terminal SAM (sterile-motif) domain. Multiple-sequence alignment has predicted that the CABIT domain adopts an all-strand structure with at least 12 strands, ie a dyad of six-stranded beta-barrel units. The CABIT domain contains a nearly absolutely conserved cysteine residue which is likely to be central to its function. CABIT domain proteins function downstream of tyrosine kinase signalling and interact with GRB2.


Pssm-ID: 463686  Cd Length: 261  Bit Score: 107.53  E-value: 5.99e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953319091 265 ILEIPEGpsIFLSPWAGSLHKGQKLCIHGLasPPWRVLV----STKGRKIPRHFMVSGAYQGKLRRRPRE--FPTAYDLL 338
Cdd:pfam12736   4 VVKVTSG--IYGEGSVYCLSKGDVLLIHGL--KQAKKVVaqevEEGRGVVGPKLLIPLSYPGLFKLLADEgpFESVEELA 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953319091 339 GALqpgqPLRVVATKD---------CEGEGVESPGFTSLAVGDRLEVLRSGQAHGAEGRD-----IDVLVCQRLSDKAee 404
Cdd:pfam12736  80 RSF----PIRVLAKEEgpdsvgvpmFRSSDDMSLANFTLQAGEELTLLGVEESSGGKEELasvtvGDYLICLVNQTGE-- 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953319091 405 eeeeenedvedddQILLPLYFSGSFVEEMNDSRRYSLEDLTAHFSLPCEVKVVAKDSshPADPLPSF-PGLRLEEKIMEP 483
Cdd:pfam12736 154 -------------SVLLPLSCRGRFSEECEDEGEYTLREIVEKFKLPLNVKVVVGDP--PRGDLDAFtGELRLEPVYEEQ 218
                         250       260       270
                  ....*....|....*....|....*....|....*
gi 1953319091 484 FLVVSL----NSNPEMCFEIpPRWLDLTVVEAEGQ 514
Cdd:pfam12736 219 AVVASPllipVPFRKLEVPI-PSDLDVEVAEVTSA 252
CABIT pfam12736
Cell-cycle sustaining, positive selection,; The 'CABIT' domain (for 'cysteine-containing, all- ...
18-236 1.84e-18

Cell-cycle sustaining, positive selection,; The 'CABIT' domain (for 'cysteine-containing, all- in Themis') is found in a newly identified gene family that has three mammalian homologs (Themis, Icb1 and 9130404H23Rik) that encode proteins with two CABIT domains and a highly conserved proline-rich region. In contrast, Fam59A, Fam59B and related proteins from mammals to cnidarians, including the insect Serrano proteins, have a single copy of the CABIT domain, a proline-rich region and often a C-terminal SAM (sterile-motif) domain. Multiple-sequence alignment has predicted that the CABIT domain adopts an all-strand structure with at least 12 strands, ie a dyad of six-stranded beta-barrel units. The CABIT domain contains a nearly absolutely conserved cysteine residue which is likely to be central to its function. CABIT domain proteins function downstream of tyrosine kinase signalling and interact with GRB2.


Pssm-ID: 463686  Cd Length: 261  Bit Score: 85.58  E-value: 1.84e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953319091  18 LPRVLRVCSGVYFQGSIYeisgnecCLSTGDLIKVTQVRLQK-VVCE-----NPGTGQTMEITPDFHGYFSPLTGRQSYG 91
Cdd:pfam12736   1 LPQVVKVTSGIYGEGSVY-------CLSKGDVLLIHGLKQAKkVVAQeveegRGVVGPKLLIPLSYPGLFKLLADEGPFE 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953319091  92 TLEELLSA--------ATQCSKTLPICFMSTHRITTEARVVPEDQPLKLEAVETYHGTYRA----------RCVLDTETH 153
Cdd:pfam12736  74 SVEELARSfpirvlakEEGPDSVGVPMFRSSDDMSLANFTLQAGEELTLLGVEESSGGKEElasvtvgdylICLVNQTGE 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953319091 154 PFIlhLPLSQKGPFWEWKPGAPRPLLKAL--QDPALSNLLFTCPTLPW-------RTLILRPQYEVQAIMHM-------- 216
Cdd:pfam12736 154 SVL--LPLSCRGRFSEECEDEGEYTLREIveKFKLPLNVKVVVGDPPRgdldaftGELRLEPVYEEQAVVASpllipvpf 231
                         250       260
                  ....*....|....*....|
gi 1953319091 217 RRTIVKIPSSLEVDVEDVTS 236
Cdd:pfam12736 232 RKLEVPIPSDLDVEVAEVTS 251
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH