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Conserved domains on  [gi|1953030502|ref|XP_038431022|]
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ataxin-2 isoform X3 [Canis lupus familiaris]

Protein Classification

PABP-interacting PAM2 motif-containing protein( domain architecture ID 10627809)

PABP-interacting PAM2 motif-containing protein similar to human polyadenylate-binding protein-interacting protein 2 (PAIP2) that acts as a repressor in the regulation of translation initiation of poly(A)-containing mRNAs

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SM-ATX pfam14438
Ataxin 2 SM domain; This SM domain is found in Ataxin-2.
 3-76 1.34e-20

Ataxin 2 SM domain; This SM domain is found in Ataxin-2.


:

Pssm-ID: 464173  Cd Length: 78  Bit Score: 86.84  E-value: 1.34e-20
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1953030502    3 MVHILTSVVGSKCEVQVKNGGIYEGVFKTYSP--KCDLVLDAAHEKSVESSSG--PKREEIMESILFKCSDFVVVQFK 76
Cdd:pfam14438    1 LLFLLTSLVGLVVEVTTKNGEVYEGIFSTASLekDFGVVLKMARRIKKSNGSGlnPVRGEIVDTMIFPAKDIVDIEAK 78
LsmAD pfam06741
LsmAD domain; This domain is found associated with Lsm domain.
 144-205 7.76e-16

LsmAD domain; This domain is found associated with Lsm domain.


:

Pssm-ID: 461998 [Multi-domain]  Cd Length: 65  Bit Score: 72.60  E-value: 7.76e-16
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1953030502  144 YGVVSTYDSSLssYTVPLERdNSEEFLKREARANQLAEEIESSAQYKARVALENDDR------SEEEK 205
Cdd:pfam06741    1 FGVKSTYDENL--YTTKLDR-SSPDYKEREAEAERIAREIEGSASTNAHVAEERGLDvddsglDEEDK 65
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 664-990 2.74e-06

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 51.86  E-value: 2.74e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953030502  664 PKPSTTPTSPRPQAQPSPSMVGHQQPAPVYTqPVCFAPNMMYPVPVSPGVQPLYPIPMTPMPVNQAKTYRAGKVPNMPQQ 743
Cdd:PHA03247  2708 PEPAPHALVSATPLPPGPAAARQASPALPAA-PAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRP 2786

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953030502  744 RQEQHHQS--AMMHPASAAGPPIVATPPAYSTQYVAYSPQQFPNQPLVQHV-PHYQSQHPHVYSP----VIQGNARMMAP 816
Cdd:PHA03247  2787 AVASLSESreSLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTaPPPPPGPPPPSLPlggsVAPGGDVRRRP 2866

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953030502  817 PAHAQPGLVSSSATQYGAHEQTHAMYVSTGSLAQQyahPNATLHPHTPHPQPSATPTGQQQSQHGGSHPAPSPVQHHQHQ 896
Cdd:PHA03247  2867 PSRSPAAKPAAPARPPVRRLARPAVSRSTESFALP---PDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPL 2943

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953030502  897 AAQALHLASPQQQSAIYHAGLAPTPPSMTPASNTQSPQNSfptaqqtvftihPSHVQPA-YTNPPHMAHVPQAHVQSGMV 975
Cdd:PHA03247  2944 APTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPA------------PSREAPAsSTPPLTGHSLSRVSSWASSL 3011

                          330
                   ....*....|....*.
gi 1953030502  976 PSH-PTAHAPMMLMTT 990
Cdd:PHA03247  3012 ALHeETDPPPVSLKQT 3027
PAM2 pfam07145
Ataxin-2 C-terminal region; The PABP-interacting motif PAM2 has been identified in various ...
 645-660 5.00e-03

Ataxin-2 C-terminal region; The PABP-interacting motif PAM2 has been identified in various eukaryotic proteins as an important binding site for pfam00658. It has been found in a wide range of eukaryotic proteins. Strikingly, this motif appears to occur solely outside of globular domains.


:

Pssm-ID: 429316  Cd Length: 17  Bit Score: 35.28  E-value: 5.00e-03
                           10
                   ....*....|....*.
gi 1953030502  645 RKSTLNPNAKEFNPRS 660
Cdd:pfam07145    1 SKSKLNPNAKEFVPSF 16
 
Name Accession Description Interval E-value
SM-ATX pfam14438
Ataxin 2 SM domain; This SM domain is found in Ataxin-2.
 3-76 1.34e-20

Ataxin 2 SM domain; This SM domain is found in Ataxin-2.


Pssm-ID: 464173  Cd Length: 78  Bit Score: 86.84  E-value: 1.34e-20
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1953030502    3 MVHILTSVVGSKCEVQVKNGGIYEGVFKTYSP--KCDLVLDAAHEKSVESSSG--PKREEIMESILFKCSDFVVVQFK 76
Cdd:pfam14438    1 LLFLLTSLVGLVVEVTTKNGEVYEGIFSTASLekDFGVVLKMARRIKKSNGSGlnPVRGEIVDTMIFPAKDIVDIEAK 78
LsmAD pfam06741
LsmAD domain; This domain is found associated with Lsm domain.
 144-205 7.76e-16

LsmAD domain; This domain is found associated with Lsm domain.


Pssm-ID: 461998 [Multi-domain]  Cd Length: 65  Bit Score: 72.60  E-value: 7.76e-16
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1953030502  144 YGVVSTYDSSLssYTVPLERdNSEEFLKREARANQLAEEIESSAQYKARVALENDDR------SEEEK 205
Cdd:pfam06741    1 FGVKSTYDENL--YTTKLDR-SSPDYKEREAEAERIAREIEGSASTNAHVAEERGLDvddsglDEEDK 65
PHA03247 PHA03247
large tegument protein UL36; Provisional
 664-990 2.74e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 51.86  E-value: 2.74e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953030502  664 PKPSTTPTSPRPQAQPSPSMVGHQQPAPVYTqPVCFAPNMMYPVPVSPGVQPLYPIPMTPMPVNQAKTYRAGKVPNMPQQ 743
Cdd:PHA03247  2708 PEPAPHALVSATPLPPGPAAARQASPALPAA-PAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRP 2786

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953030502  744 RQEQHHQS--AMMHPASAAGPPIVATPPAYSTQYVAYSPQQFPNQPLVQHV-PHYQSQHPHVYSP----VIQGNARMMAP 816
Cdd:PHA03247  2787 AVASLSESreSLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTaPPPPPGPPPPSLPlggsVAPGGDVRRRP 2866

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953030502  817 PAHAQPGLVSSSATQYGAHEQTHAMYVSTGSLAQQyahPNATLHPHTPHPQPSATPTGQQQSQHGGSHPAPSPVQHHQHQ 896
Cdd:PHA03247  2867 PSRSPAAKPAAPARPPVRRLARPAVSRSTESFALP---PDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPL 2943

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953030502  897 AAQALHLASPQQQSAIYHAGLAPTPPSMTPASNTQSPQNSfptaqqtvftihPSHVQPA-YTNPPHMAHVPQAHVQSGMV 975
Cdd:PHA03247  2944 APTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPA------------PSREAPAsSTPPLTGHSLSRVSSWASSL 3011

                          330
                   ....*....|....*.
gi 1953030502  976 PSH-PTAHAPMMLMTT 990
Cdd:PHA03247  3012 ALHeETDPPPVSLKQT 3027
PABP-1234 TIGR01628
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ...
 645-803 1.48e-05

polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range.


Pssm-ID: 130689 [Multi-domain]  Cd Length: 562  Bit Score: 49.03  E-value: 1.48e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953030502  645 RKSTLNpnaKEFNPRSFSQPKPSTTptSPRPQAQPSPSMVGHQQPAPVYTQPVCFAPNMMYPVPVSPGVQPLypiPMTPM 724
Cdd:TIGR01628  367 RRAHLQ---DQFMQLQPRMRQLPMG--SPMGGAMGQPPYYGQGPQQQFNGQPLGWPRMSMMPTPMGPGGPLR---PNGLA 438

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953030502  725 PVNQaktyrAGKVPNMPQQRQEQHHQSAMMHPASAAGPPIVATPPAYSTQYVAYSPQQFPNQPLVQHVPHYQSQ------ 798
Cdd:TIGR01628  439 PMNA-----VRAPSRNAQNAAQKPPMQPVMYPPNYQSLPLSQDLPQPQSTASQGGQNKKLAQVLASATPQMQKQvlgerl 513


                   ....*
gi 1953030502  799 HPHVY 803
Cdd:TIGR01628  514 FPLVE 518
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 745-991 8.43e-05

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 46.57  E-value: 8.43e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953030502  745 QEQHHQSAMMHPASAAGPPIVATPPAYSTQY-VAYSPQQFPNQPLVQHVPHYQSQHP----HVySPVIQGNA--RMMAPP 817
Cdd:pfam09770   96 EEEQVRFNRQQPAARAAQSSAQPPASSLPQYqYASQQSQQPSKPVRTGYEKYKEPEPipdlQV-DASLWGVApkKAAAPA 174

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953030502  818 AHAQPGLVSSSATQYG----------------AHEQTHAMYVSTGSLAQQYAHPNATLHPHTPHPQPSATPTGQQQSQHG 881
Cdd:pfam09770  175 PAPQPAAQPASLPAPSrkmmsleeveaamraqAKKPAQQPAPAPAQPPAAPPAQQAQQQQQFPPQIQQQQQPQQQPQQPQ 254

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953030502  882 GSHPAPSPVQHHQHQAAQALHLASPQQQSAIYHAGLAPTPPSMTPASNTQSPqNSFPTAQQTVFTIHPSHVQPAytnPPH 961
Cdd:pfam09770  255 QHPGQGHPVTILQRPQSPQPDPAQPSIQPQAQQFHQQPPPVPVQPTQILQNP-NRLSAARVGYPQNPQPGVQPA---PAH 330

                          250       260       270
                   ....*....|....*....|....*....|
gi 1953030502  962 MAHvPQAHVQSGMVPSHpTAHAPMMLMTTQ 991
Cdd:pfam09770  331 QAH-RQQGSFGRQAPII-THPQQLAQLSEE 358
PAM2 pfam07145
Ataxin-2 C-terminal region; The PABP-interacting motif PAM2 has been identified in various ...
 645-660 5.00e-03

Ataxin-2 C-terminal region; The PABP-interacting motif PAM2 has been identified in various eukaryotic proteins as an important binding site for pfam00658. It has been found in a wide range of eukaryotic proteins. Strikingly, this motif appears to occur solely outside of globular domains.


Pssm-ID: 429316  Cd Length: 17  Bit Score: 35.28  E-value: 5.00e-03
                           10
                   ....*....|....*.
gi 1953030502  645 RKSTLNPNAKEFNPRS 660
Cdd:pfam07145    1 SKSKLNPNAKEFVPSF 16
 
Name Accession Description Interval E-value
SM-ATX pfam14438
Ataxin 2 SM domain; This SM domain is found in Ataxin-2.
 3-76 1.34e-20

Ataxin 2 SM domain; This SM domain is found in Ataxin-2.


Pssm-ID: 464173  Cd Length: 78  Bit Score: 86.84  E-value: 1.34e-20
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1953030502    3 MVHILTSVVGSKCEVQVKNGGIYEGVFKTYSP--KCDLVLDAAHEKSVESSSG--PKREEIMESILFKCSDFVVVQFK 76
Cdd:pfam14438    1 LLFLLTSLVGLVVEVTTKNGEVYEGIFSTASLekDFGVVLKMARRIKKSNGSGlnPVRGEIVDTMIFPAKDIVDIEAK 78
LsmAD pfam06741
LsmAD domain; This domain is found associated with Lsm domain.
 144-205 7.76e-16

LsmAD domain; This domain is found associated with Lsm domain.


Pssm-ID: 461998 [Multi-domain]  Cd Length: 65  Bit Score: 72.60  E-value: 7.76e-16
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1953030502  144 YGVVSTYDSSLssYTVPLERdNSEEFLKREARANQLAEEIESSAQYKARVALENDDR------SEEEK 205
Cdd:pfam06741    1 FGVKSTYDENL--YTTKLDR-SSPDYKEREAEAERIAREIEGSASTNAHVAEERGLDvddsglDEEDK 65
PHA03247 PHA03247
large tegument protein UL36; Provisional
 664-990 2.74e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 51.86  E-value: 2.74e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953030502  664 PKPSTTPTSPRPQAQPSPSMVGHQQPAPVYTqPVCFAPNMMYPVPVSPGVQPLYPIPMTPMPVNQAKTYRAGKVPNMPQQ 743
Cdd:PHA03247  2708 PEPAPHALVSATPLPPGPAAARQASPALPAA-PAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRP 2786

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953030502  744 RQEQHHQS--AMMHPASAAGPPIVATPPAYSTQYVAYSPQQFPNQPLVQHV-PHYQSQHPHVYSP----VIQGNARMMAP 816
Cdd:PHA03247  2787 AVASLSESreSLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTaPPPPPGPPPPSLPlggsVAPGGDVRRRP 2866

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953030502  817 PAHAQPGLVSSSATQYGAHEQTHAMYVSTGSLAQQyahPNATLHPHTPHPQPSATPTGQQQSQHGGSHPAPSPVQHHQHQ 896
Cdd:PHA03247  2867 PSRSPAAKPAAPARPPVRRLARPAVSRSTESFALP---PDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPL 2943

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953030502  897 AAQALHLASPQQQSAIYHAGLAPTPPSMTPASNTQSPQNSfptaqqtvftihPSHVQPA-YTNPPHMAHVPQAHVQSGMV 975
Cdd:PHA03247  2944 APTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPA------------PSREAPAsSTPPLTGHSLSRVSSWASSL 3011

                          330
                   ....*....|....*.
gi 1953030502  976 PSH-PTAHAPMMLMTT 990
Cdd:PHA03247  3012 ALHeETDPPPVSLKQT 3027
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 658-1014 8.95e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 49.98  E-value: 8.95e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953030502  658 PRSFSQPKPSTTPTSPRPQAQPSPSMVGHQQPAPvytqpvcfAPNMMYPVPVSPGVQPLYPIPMTPMPVNQAKTYRAGKV 737
Cdd:PRK07764   400 SAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAP--------APAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPA 471

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953030502  738 PNMPQQRQEQHHQSAMMHPASAAGPPIVATPPAySTQYVAYSPQQFPNqpLVQHVPHYQ-------SQHPHVYSpvIQGN 810
Cdd:PRK07764   472 AAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPA-GADDAATLRERWPE--ILAAVPKRSrktwailLPEATVLG--VRGD 546

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953030502  811 ARMMAppaHAQPGLVSSSATQYGA-------HEQTHA-----MYVSTGSLAQQYAHPNA----TLHPHTPHPQPSATPTG 874
Cdd:PRK07764   547 TLVLG---FSTGGLARRFASPGNAevlvtalAEELGGdwqveAVVGPAPGAAGGEGPPApassGPPEEAARPAAPAAPAA 623

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953030502  875 QQQSQHGGSHPAPSPVQHHQHQAAQALHL----------ASPQQQSAIYHAGLAPTPPSMTPASNTQSPQNSFPTAQQTV 944
Cdd:PRK07764   624 PAAPAPAGAAAAPAEASAAPAPGVAAPEHhpkhvavpdaSDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAP 703

                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1953030502  945 FTIHPSHVQPAYTNPPHMAHVPQA-----HVQSGMVPSHPTAHAPMMLMTT--QPPGGPQAALAQSALQPIPVSTTA 1014
Cdd:PRK07764   704 APAATPPAGQADDPAAQPPQAAQGasapsPAADDPVPLPPEPDDPPDPAGApaQPPPPPAPAPAAAPAAAPPPSPPS 780
PHA03247 PHA03247
large tegument protein UL36; Provisional
 664-941 1.23e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 49.55  E-value: 1.23e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953030502  664 PKPSTTPTSPRPQAQPSPsmVG--------HQQPAPVYTQPVCFAPNMMYPVPVSPGVQPLYPIPMTPMPVNQAKTYRAG 735
Cdd:PHA03247  2674 AQASSPPQRPRRRAARPT--VGsltsladpPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATP 2751

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953030502  736 KVPNMPQQRQEQHHQSAMMHPASAAGPPIV-ATPPAYSTQYVAYSPQQFPNQPLVQHVPhyqSQHPHVYSPVIQGNARMM 814
Cdd:PHA03247  2752 GGPARPARPPTTAGPPAPAPPAAPAAGPPRrLTRPAVASLSESRESLPSPWDPADPPAA---VLAPAAALPPAASPAGPL 2828

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953030502  815 APPAHAQPGLVSSSATQYGAHEQTHAMYVSTGSLA------QQYAHPNATLHP---HTPHPQPSATPTGQQQSQHGGSHP 885
Cdd:PHA03247  2829 PPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRrrppsrSPAAKPAAPARPpvrRLARPAVSRSTESFALPPDQPERP 2908

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1953030502  886 APSPVQHHQHQAAQALHLASPQQQSAIYHAGLAPTPPSMTPASNTQsPQNSFPTAQ 941
Cdd:PHA03247  2909 PQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGE-PSGAVPQPW 2963
PABP-1234 TIGR01628
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ...
 645-803 1.48e-05

polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range.


Pssm-ID: 130689 [Multi-domain]  Cd Length: 562  Bit Score: 49.03  E-value: 1.48e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953030502  645 RKSTLNpnaKEFNPRSFSQPKPSTTptSPRPQAQPSPSMVGHQQPAPVYTQPVCFAPNMMYPVPVSPGVQPLypiPMTPM 724
Cdd:TIGR01628  367 RRAHLQ---DQFMQLQPRMRQLPMG--SPMGGAMGQPPYYGQGPQQQFNGQPLGWPRMSMMPTPMGPGGPLR---PNGLA 438

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953030502  725 PVNQaktyrAGKVPNMPQQRQEQHHQSAMMHPASAAGPPIVATPPAYSTQYVAYSPQQFPNQPLVQHVPHYQSQ------ 798
Cdd:TIGR01628  439 PMNA-----VRAPSRNAQNAAQKPPMQPVMYPPNYQSLPLSQDLPQPQSTASQGGQNKKLAQVLASATPQMQKQvlgerl 513


                   ....*
gi 1953030502  799 HPHVY 803
Cdd:TIGR01628  514 FPLVE 518
PHA03247 PHA03247
large tegument protein UL36; Provisional
 659-1023 6.27e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 47.24  E-value: 6.27e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953030502  659 RSFSQPKPSTTPTSP-------RPQAQPSPSM----VGHQQPAPVYTQPVCFAPNMMYPVPVSPGVQPLYPIPMTPMPVN 727
Cdd:PHA03247  2566 RSVPPPRPAPRPSEPavtsrarRPDAPPQSARprapVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPT 2645

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953030502  728 QAKTYRAGKVPNMPQQRQEQHhQSAMMHPASAAGPPIVATPPAYSTQYVAYSPQQFPNQPLVQHVPHYQSQHPHVYSPVI 807
Cdd:PHA03247  2646 VPPPERPRDDPAPGRVSRPRR-ARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPG 2724

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953030502  808 QGNARMMAPPAHAQPGLVSSSATQYGAHEQTHAMYVSTGSLAQQYAHPNAtlhPHTPHPQPSATPTGQQQSQHGGSHPAP 887
Cdd:PHA03247  2725 PAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAA---PAAGPPRRLTRPAVASLSESRESLPSP 2801

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953030502  888 SPVQHHQHQAAQALHLASPQQQSAiyhaGLAPTPPSMTPASNTQSPQNS------------------FPTAQQTVFTIH- 948
Cdd:PHA03247  2802 WDPADPPAAVLAPAAALPPAASPA----GPLPPPTSAQPTAPPPPPGPPppslplggsvapggdvrrRPPSRSPAAKPAa 2877

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953030502  949 PSHV------QPAYTNPPHMAHVPQAHVQSGMVPSHPTAhaPMMLMTTQPPGGPQAALAQSALQPIPVSTTAHFPYMTHP 1022
Cdd:PHA03247  2878 PARPpvrrlaRPAVSRSTESFALPPDQPERPPQPQAPPP--PQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEP 2955


                   .
gi 1953030502 1023 S 1023
Cdd:PHA03247  2956 S 2956
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 745-991 8.43e-05

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 46.57  E-value: 8.43e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953030502  745 QEQHHQSAMMHPASAAGPPIVATPPAYSTQY-VAYSPQQFPNQPLVQHVPHYQSQHP----HVySPVIQGNA--RMMAPP 817
Cdd:pfam09770   96 EEEQVRFNRQQPAARAAQSSAQPPASSLPQYqYASQQSQQPSKPVRTGYEKYKEPEPipdlQV-DASLWGVApkKAAAPA 174

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953030502  818 AHAQPGLVSSSATQYG----------------AHEQTHAMYVSTGSLAQQYAHPNATLHPHTPHPQPSATPTGQQQSQHG 881
Cdd:pfam09770  175 PAPQPAAQPASLPAPSrkmmsleeveaamraqAKKPAQQPAPAPAQPPAAPPAQQAQQQQQFPPQIQQQQQPQQQPQQPQ 254

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953030502  882 GSHPAPSPVQHHQHQAAQALHLASPQQQSAIYHAGLAPTPPSMTPASNTQSPqNSFPTAQQTVFTIHPSHVQPAytnPPH 961
Cdd:pfam09770  255 QHPGQGHPVTILQRPQSPQPDPAQPSIQPQAQQFHQQPPPVPVQPTQILQNP-NRLSAARVGYPQNPQPGVQPA---PAH 330

                          250       260       270
                   ....*....|....*....|....*....|
gi 1953030502  962 MAHvPQAHVQSGMVPSHpTAHAPMMLMTTQ 991
Cdd:pfam09770  331 QAH-RQQGSFGRQAPII-THPQQLAQLSEE 358
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 681-907 3.02e-04

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 45.08  E-value: 3.02e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953030502  681 PSMVGHQQPAPVYTQPVCFAPNMMYPVPVSPgVQPLYPIPMTPMPVNQaktyragkvPNMPQQRQeqhhqsammhPASAA 760
Cdd:PRK10263   309 PLLNGAPITEPVAVAAAATTATQSWAAPVEP-VTQTPPVASVDVPPAQ---------PTVAWQPV----------PGPQT 368

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953030502  761 GPPIVATPPAystqyvAYSPQQFPNQPLVQHVPHYQSQHPHvyspviqgnarmmAPPAHAQPGLVSSSATQYGAHEQTHA 840
Cdd:PRK10263   369 GEPVIAPAPE------GYPQQSQYAQPAVQYNEPLQQPVQP-------------QQPYYAPAAEQPAQQPYYAPAPEQPA 429

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1953030502  841 MYvstGSLAQQYAHPNATLHPHTPHPQPSATPTGQQQSQHGGSHPAPSPVQHHQHQAAQALHLASPQ 907
Cdd:PRK10263   430 QQ---PYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPE 493
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 643-890 3.83e-04

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 44.64  E-value: 3.83e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953030502  643 QVRKSTLNPNAKEFNP--RSFSQPKPSTTPTSPRPQAQPSPSMVG---HQQPAPVytqpvcfaPNM-----MYPVPVSPG 712
Cdd:pfam09770   99 QVRFNRQQPAARAAQSsaQPPASSLPQYQYASQQSQQPSKPVRTGyekYKEPEPI--------PDLqvdasLWGVAPKKA 170

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953030502  713 VQPLYPIPMTPMPVNQAKTYRagKV--------------PNMPQQRQEQHHQsammhpasaagpPIVATPPAYSTQYVAY 778
Cdd:pfam09770  171 AAPAPAPQPAAQPASLPAPSR--KMmsleeveaamraqaKKPAQQPAPAPAQ------------PPAAPPAQQAQQQQQF 236

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953030502  779 SPQQFPNQPLVQHVPHYQSQHPHVYSPVIQgnARMMAPPahAQPGLVSSSATQYGAHEQTHAMYVSTGSLAQQYAHPNAT 858
Cdd:pfam09770  237 PPQIQQQQQPQQQPQQPQQHPGQGHPVTIL--QRPQSPQ--PDPAQPSIQPQAQQFHQQPPPVPVQPTQILQNPNRLSAA 312

                          250       260       270
                   ....*....|....*....|....*....|...
gi 1953030502  859 LHPHTPHPQPSATPT-GQQQSQHGGSHPAPSPV 890
Cdd:pfam09770  313 RVGYPQNPQPGVQPApAHQAHRQQGSFGRQAPI 345
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 662-934 8.07e-04

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 43.54  E-value: 8.07e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953030502  662 SQPKPSTTPTSPRPQAQPSPsmvGHQQPAPVYT-QPVCFAPNMMYPVPVSPGVQPLYPiPMTPMPVNQAktyragkvPNM 740
Cdd:PRK10263   345 PVASVDVPPAQPTVAWQPVP---GPQTGEPVIApAPEGYPQQSQYAQPAVQYNEPLQQ-PVQPQQPYYA--------PAA 412

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953030502  741 PQQRQEQHHQSAMMHPASAAGPPIVATPPAYSTQYVAYspqqfPNQPLVQHVPHYQSQHPHVySPVIQgNARMMAPPAHA 820
Cdd:PRK10263   413 EQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAE-----EQQSTFAPQSTYQTEQTYQ-QPAAQ-EPLYQQPQPVE 485

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953030502  821 QPGLVSSSATQYGAHEQTHAMYVSTgSLAQQYAHPNATLHP-HTPHPQPSATPTGQQQSQHGGSHPAPSPVQHHQHQAAQ 899
Cdd:PRK10263   486 QQPVVEPEPVVEETKPARPPLYYFE-EVEEKRAREREQLAAwYQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSPL 564

                          250       260       270
                   ....*....|....*....|....*....|....*...
gi 1953030502  900 ALHLaspqqQSAIYHAGLAPTP--PSMTPASN-TQSPQ 934
Cdd:PRK10263   565 ASGV-----KKATLATGAAATVaaPVFSLANSgGPRPQ 597
PHA03247 PHA03247
large tegument protein UL36; Provisional
 651-1009 3.97e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.46  E-value: 3.97e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953030502  651 PNAKEFNPRSFSQPKPSTTPTSPRPQAQPSPSmvghqqpapvytqpvcfapnmmyPVPVSPGVQPLYPIPMTPMPVNQAK 730
Cdd:PHA03247  2601 PVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPS-----------------------PAANEPDPHPPPTVPPPERPRDDPA 2657

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953030502  731 TYRAGKvpnmpqqrqeQHHQSAMMHPASAAGPPIVATPPAYSTQYVAYSPQQFPNQPLVQHVPHYQSQHPHVYSPVIQGN 810
Cdd:PHA03247  2658 PGRVSR----------PRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAA 2727

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953030502  811 ARMMAPPAHAQPGLVSSSATQYGAHEQTHAMYVSTGSLAQQYAHPNAtlhPHTPHPQPSATPTGQQQSQHGGSHPAPSPV 890
Cdd:PHA03247  2728 ARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAA---PAAGPPRRLTRPAVASLSESRESLPSPWDP 2804

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953030502  891 QHHQHQAAQALHLASPQQQSaiyhAGLAPTPPSMTPASnTQSPQNSFPTAQQTVFTIHP----SHVQPAYTNPPHMAHVP 966
Cdd:PHA03247  2805 ADPPAAVLAPAAALPPAASP----AGPLPPPTSAQPTA-PPPPPGPPPPSLPLGGSVAPggdvRRRPPSRSPAAKPAAPA 2879

                          330       340       350       360
                   ....*....|....*....|....*....|....*....|...
gi 1953030502  967 QAHVQSGMVPSHPTAHAPMMLMTTQPPGGPQAALAQSALQPIP 1009
Cdd:PHA03247  2880 RPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQ 2922
PAM2 pfam07145
Ataxin-2 C-terminal region; The PABP-interacting motif PAM2 has been identified in various ...
 645-660 5.00e-03

Ataxin-2 C-terminal region; The PABP-interacting motif PAM2 has been identified in various eukaryotic proteins as an important binding site for pfam00658. It has been found in a wide range of eukaryotic proteins. Strikingly, this motif appears to occur solely outside of globular domains.


Pssm-ID: 429316  Cd Length: 17  Bit Score: 35.28  E-value: 5.00e-03
                           10
                   ....*....|....*.
gi 1953030502  645 RKSTLNPNAKEFNPRS 660
Cdd:pfam07145    1 SKSKLNPNAKEFVPSF 16
Atrophin-1 pfam03154
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
 606-1017 6.36e-03

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.


Pssm-ID: 460830 [Multi-domain]  Cd Length: 991  Bit Score: 40.52  E-value: 6.36e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953030502  606 NTEHKRGPEVTSQGVQTSSPGCKQEKDDKEEKKDAAEQVRKSTLNPNAKEFNPRSFSQPKPSTTPTSPRPQAQPSPSMVG 685
Cdd:pfam03154  127 NDEGSSDPKDIDQDNRSTSPSIPSPQDNESDSDSSAQQQILQTQPPVLQAQSGAASPPSPPPPGTTQAATAGPTPSAPSV 206

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953030502  686 HQQPAPVYTQPvcfapnmmyPVPVSPGVQPLYPIPMTPMPVNQAKTYRAGKVPNMPQ-----QRQEQHHQSAMMHPASAA 760
Cdd:pfam03154  207 PPQGSPATSQP---------PNQTQSTAAPHTLIQQTPTLHPQRLPSPHPPLQPMTQppppsQVSPQPLPQPSLHGQMPP 277

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953030502  761 GPPIVATPPaystqyvAYSPQQFPNQPLVQHVPHYQSQHPHVYSPVIQGNARMMAppahAQPGLVSSSATQYGAHEQTha 840
Cdd:pfam03154  278 MPHSLQTGP-------SHMQHPVPPQPFPLTPQSSQSQVPPGPSPAAPGQSQQRI----HTPPSQSQLQSQQPPREQP-- 344

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953030502  841 myVSTGSLAQQYAHPNATLH-PHTPHPQPSATP---TGQQQSQHGGSHPAPSPVQHHQHQAAQALHLASPQQQSAIYHAG 916
Cdd:pfam03154  345 --LPPAPLSMPHIKPPPTTPiPQLPNPQSHKHPphlSGPSPFQMNSNLPPPPALKPLSSLSTHHPPSAHPPPLQLMPQSQ 422

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953030502  917 LAPTPPSMTPASnTQSPQNSFPTAQQ-TVFTIHPSHVQPAYTNPPHMAHVPqahvQSGMVPSHPTAHAPMMLMTTQPPgg 995
Cdd:pfam03154  423 QLPPPPAQPPVL-TQSQSLPPPAASHpPTSGLHQVPSQSPFPQHPFVPGGP----PPITPPSGPPTSTSSAMPGIQPP-- 495

                          410       420
                   ....*....|....*....|..
gi 1953030502  996 pqAALAQSALQPIPVSTTAHFP 1017
Cdd:pfam03154  496 --SSASVSSSGPVPAAVSCPLP 515
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 803-981 8.40e-03

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 40.45  E-value: 8.40e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953030502  803 YSPVIQGNArMMAPPAHAQpglVSSSATQYGAHE-----QTHAMYVSTGSLAQQYAHPNATLHPHTPHP----QPSATPT 873
Cdd:PRK10263   307 YDPLLNGAP-ITEPVAVAA---AATTATQSWAAPvepvtQTPPVASVDVPPAQPTVAWQPVPGPQTGEPviapAPEGYPQ 382

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953030502  874 GQQQSQHGGSHPAP--------SPVQHHQHQAAQALHLASPQQQSAIYHAGLAPTPPSMTPASNTQSPQNSFPTAQQTVF 945
Cdd:PRK10263   383 QSQYAQPAVQYNEPlqqpvqpqQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTY 462

                          170       180       190
                   ....*....|....*....|....*....|....*.
gi 1953030502  946 TIHPSHVQPAYTNPPHMAhvPQAHVQSGMVPSHPTA 981
Cdd:PRK10263   463 QTEQTYQQPAAQEPLYQQ--PQPVEQQPVVEPEPVV 496
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 710-805 9.70e-03

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 40.07  E-value: 9.70e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953030502  710 SPGVQPLYPIPMTPMPVNQaktYRAGKVPNMPQQRQEQHHQSAMMHPASAAGPPIVATPPAYST--QYVAYSPQ-QFPNQ 786
Cdd:PRK10263   746 TPIVEPVQQPQQPVAPQQQ---YQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQpqQPVAPQPQyQQPQQ 822

                           90
                   ....*....|....*....
gi 1953030502  787 PLVQHVPHYQSQHPHVYSP 805
Cdd:PRK10263   823 PVAPQPQYQQPQQPVAPQP 841
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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