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myocardin-related transcription factor B isoform X4 [Canis lupus familiaris]
RPEL and SAP domain-containing protein( domain architecture ID 13233135)
protein containing domains RPEL, SAP, and GBP_C
List of domain hits
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Name | Accession | Description | Interval | E-value | ||||
SAP | pfam02037 | SAP domain; The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA/RNA binding ... |
420-453 | 2.79e-10 | ||||
SAP domain; The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA/RNA binding domain found in diverse nuclear and cytoplasmic proteins. : Pssm-ID: 460424 [Multi-domain] Cd Length: 35 Bit Score: 56.25 E-value: 2.79e-10
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PAT1 super family | cl37801 | Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ... |
703-848 | 5.86e-06 | ||||
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division. The actual alignment was detected with superfamily member pfam09770: Pssm-ID: 401645 [Multi-domain] Cd Length: 846 Bit Score: 50.42 E-value: 5.86e-06
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RPEL | smart00707 | Repeat in Drosophila CG10860, human KIAA0680 and C. elegans F26H9.2; |
160-185 | 1.32e-05 | ||||
Repeat in Drosophila CG10860, human KIAA0680 and C. elegans F26H9.2; : Pssm-ID: 128947 Cd Length: 26 Bit Score: 42.85 E-value: 1.32e-05
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RPEL | pfam02755 | RPEL repeat; The RPEL repeat is named after four conserved amino acids it contains. The RPEL ... |
117-140 | 1.64e-04 | ||||
RPEL repeat; The RPEL repeat is named after four conserved amino acids it contains. The RPEL motif binds to actin. : Pssm-ID: 460677 Cd Length: 24 Bit Score: 39.56 E-value: 1.64e-04
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DUF2130 super family | cl38307 | Uncharacterized protein conserved in bacteria (DUF2130); This domain, found in various ... |
585-620 | 2.36e-04 | ||||
Uncharacterized protein conserved in bacteria (DUF2130); This domain, found in various hypothetical prokaryotic proteins, has no known function. The actual alignment was detected with superfamily member pfam09903: Pssm-ID: 430914 [Multi-domain] Cd Length: 248 Bit Score: 44.15 E-value: 2.36e-04
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PHA03247 super family | cl33720 | large tegument protein UL36; Provisional |
218-430 | 8.43e-04 | ||||
large tegument protein UL36; Provisional The actual alignment was detected with superfamily member PHA03247: Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 43.77 E-value: 8.43e-04
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RPEL super family | cl29414 | RPEL repeat; The RPEL repeat is named after four conserved amino acids it contains. The RPEL ... |
73-97 | 1.75e-03 | ||||
RPEL repeat; The RPEL repeat is named after four conserved amino acids it contains. The RPEL motif binds to actin. The actual alignment was detected with superfamily member smart00707: Pssm-ID: 475195 Cd Length: 26 Bit Score: 36.69 E-value: 1.75e-03
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Name | Accession | Description | Interval | E-value | |||||
SAP | pfam02037 | SAP domain; The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA/RNA binding ... |
420-453 | 2.79e-10 | |||||
SAP domain; The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA/RNA binding domain found in diverse nuclear and cytoplasmic proteins. Pssm-ID: 460424 [Multi-domain] Cd Length: 35 Bit Score: 56.25 E-value: 2.79e-10
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SAP | smart00513 | Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation; |
420-451 | 7.39e-09 | |||||
Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation; Pssm-ID: 128789 [Multi-domain] Cd Length: 35 Bit Score: 52.10 E-value: 7.39e-09
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PAT1 | pfam09770 | Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ... |
703-848 | 5.86e-06 | |||||
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division. Pssm-ID: 401645 [Multi-domain] Cd Length: 846 Bit Score: 50.42 E-value: 5.86e-06
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RPEL | smart00707 | Repeat in Drosophila CG10860, human KIAA0680 and C. elegans F26H9.2; |
160-185 | 1.32e-05 | |||||
Repeat in Drosophila CG10860, human KIAA0680 and C. elegans F26H9.2; Pssm-ID: 128947 Cd Length: 26 Bit Score: 42.85 E-value: 1.32e-05
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RPEL | pfam02755 | RPEL repeat; The RPEL repeat is named after four conserved amino acids it contains. The RPEL ... |
161-184 | 3.14e-05 | |||||
RPEL repeat; The RPEL repeat is named after four conserved amino acids it contains. The RPEL motif binds to actin. Pssm-ID: 460677 Cd Length: 24 Bit Score: 41.49 E-value: 3.14e-05
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RPEL | pfam02755 | RPEL repeat; The RPEL repeat is named after four conserved amino acids it contains. The RPEL ... |
117-140 | 1.64e-04 | |||||
RPEL repeat; The RPEL repeat is named after four conserved amino acids it contains. The RPEL motif binds to actin. Pssm-ID: 460677 Cd Length: 24 Bit Score: 39.56 E-value: 1.64e-04
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DUF2130 | pfam09903 | Uncharacterized protein conserved in bacteria (DUF2130); This domain, found in various ... |
585-620 | 2.36e-04 | |||||
Uncharacterized protein conserved in bacteria (DUF2130); This domain, found in various hypothetical prokaryotic proteins, has no known function. Pssm-ID: 430914 [Multi-domain] Cd Length: 248 Bit Score: 44.15 E-value: 2.36e-04
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COG4487 | COG4487 | Uncharacterized conserved protein, contains DUF2130 domain [Function unknown]; |
581-620 | 2.76e-04 | |||||
Uncharacterized conserved protein, contains DUF2130 domain [Function unknown]; Pssm-ID: 443580 [Multi-domain] Cd Length: 425 Bit Score: 44.55 E-value: 2.76e-04
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PHA03247 | PHA03247 | large tegument protein UL36; Provisional |
218-430 | 8.43e-04 | |||||
large tegument protein UL36; Provisional Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 43.77 E-value: 8.43e-04
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RPEL | smart00707 | Repeat in Drosophila CG10860, human KIAA0680 and C. elegans F26H9.2; |
73-97 | 1.75e-03 | |||||
Repeat in Drosophila CG10860, human KIAA0680 and C. elegans F26H9.2; Pssm-ID: 128947 Cd Length: 26 Bit Score: 36.69 E-value: 1.75e-03
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RPEL | smart00707 | Repeat in Drosophila CG10860, human KIAA0680 and C. elegans F26H9.2; |
117-140 | 3.09e-03 | |||||
Repeat in Drosophila CG10860, human KIAA0680 and C. elegans F26H9.2; Pssm-ID: 128947 Cd Length: 26 Bit Score: 35.92 E-value: 3.09e-03
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DamX | COG3266 | Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ... |
7-303 | 4.36e-03 | |||||
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning]; Pssm-ID: 442497 [Multi-domain] Cd Length: 455 Bit Score: 40.99 E-value: 4.36e-03
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GBP_C | cd16269 | Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal ... |
588-628 | 6.85e-03 | |||||
Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal domain. Guanylate-binding proteins (GBPs) are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence, and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. This C-terminal domain has been shown to mediate inhibition of endothelial cell proliferation by inflammatory cytokines. Pssm-ID: 293879 [Multi-domain] Cd Length: 291 Bit Score: 39.87 E-value: 6.85e-03
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Name | Accession | Description | Interval | E-value | |||||
SAP | pfam02037 | SAP domain; The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA/RNA binding ... |
420-453 | 2.79e-10 | |||||
SAP domain; The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA/RNA binding domain found in diverse nuclear and cytoplasmic proteins. Pssm-ID: 460424 [Multi-domain] Cd Length: 35 Bit Score: 56.25 E-value: 2.79e-10
|
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SAP | smart00513 | Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation; |
420-451 | 7.39e-09 | |||||
Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation; Pssm-ID: 128789 [Multi-domain] Cd Length: 35 Bit Score: 52.10 E-value: 7.39e-09
|
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PAT1 | pfam09770 | Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ... |
703-848 | 5.86e-06 | |||||
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division. Pssm-ID: 401645 [Multi-domain] Cd Length: 846 Bit Score: 50.42 E-value: 5.86e-06
|
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RPEL | smart00707 | Repeat in Drosophila CG10860, human KIAA0680 and C. elegans F26H9.2; |
160-185 | 1.32e-05 | |||||
Repeat in Drosophila CG10860, human KIAA0680 and C. elegans F26H9.2; Pssm-ID: 128947 Cd Length: 26 Bit Score: 42.85 E-value: 1.32e-05
|
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RPEL | pfam02755 | RPEL repeat; The RPEL repeat is named after four conserved amino acids it contains. The RPEL ... |
161-184 | 3.14e-05 | |||||
RPEL repeat; The RPEL repeat is named after four conserved amino acids it contains. The RPEL motif binds to actin. Pssm-ID: 460677 Cd Length: 24 Bit Score: 41.49 E-value: 3.14e-05
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RPEL | pfam02755 | RPEL repeat; The RPEL repeat is named after four conserved amino acids it contains. The RPEL ... |
117-140 | 1.64e-04 | |||||
RPEL repeat; The RPEL repeat is named after four conserved amino acids it contains. The RPEL motif binds to actin. Pssm-ID: 460677 Cd Length: 24 Bit Score: 39.56 E-value: 1.64e-04
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DUF2130 | pfam09903 | Uncharacterized protein conserved in bacteria (DUF2130); This domain, found in various ... |
585-620 | 2.36e-04 | |||||
Uncharacterized protein conserved in bacteria (DUF2130); This domain, found in various hypothetical prokaryotic proteins, has no known function. Pssm-ID: 430914 [Multi-domain] Cd Length: 248 Bit Score: 44.15 E-value: 2.36e-04
|
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COG4487 | COG4487 | Uncharacterized conserved protein, contains DUF2130 domain [Function unknown]; |
581-620 | 2.76e-04 | |||||
Uncharacterized conserved protein, contains DUF2130 domain [Function unknown]; Pssm-ID: 443580 [Multi-domain] Cd Length: 425 Bit Score: 44.55 E-value: 2.76e-04
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PHA03247 | PHA03247 | large tegument protein UL36; Provisional |
218-430 | 8.43e-04 | |||||
large tegument protein UL36; Provisional Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 43.77 E-value: 8.43e-04
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PTZ00449 | PTZ00449 | 104 kDa microneme/rhoptry antigen; Provisional |
207-306 | 1.18e-03 | |||||
104 kDa microneme/rhoptry antigen; Provisional Pssm-ID: 185628 [Multi-domain] Cd Length: 943 Bit Score: 43.14 E-value: 1.18e-03
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RPEL | smart00707 | Repeat in Drosophila CG10860, human KIAA0680 and C. elegans F26H9.2; |
73-97 | 1.75e-03 | |||||
Repeat in Drosophila CG10860, human KIAA0680 and C. elegans F26H9.2; Pssm-ID: 128947 Cd Length: 26 Bit Score: 36.69 E-value: 1.75e-03
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RPEL | smart00707 | Repeat in Drosophila CG10860, human KIAA0680 and C. elegans F26H9.2; |
117-140 | 3.09e-03 | |||||
Repeat in Drosophila CG10860, human KIAA0680 and C. elegans F26H9.2; Pssm-ID: 128947 Cd Length: 26 Bit Score: 35.92 E-value: 3.09e-03
|
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DamX | COG3266 | Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ... |
7-303 | 4.36e-03 | |||||
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning]; Pssm-ID: 442497 [Multi-domain] Cd Length: 455 Bit Score: 40.99 E-value: 4.36e-03
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PRK12727 | PRK12727 | flagellar biosynthesis protein FlhF; |
147-300 | 6.25e-03 | |||||
flagellar biosynthesis protein FlhF; Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 40.36 E-value: 6.25e-03
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GBP_C | cd16269 | Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal ... |
588-628 | 6.85e-03 | |||||
Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal domain. Guanylate-binding proteins (GBPs) are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence, and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. This C-terminal domain has been shown to mediate inhibition of endothelial cell proliferation by inflammatory cytokines. Pssm-ID: 293879 [Multi-domain] Cd Length: 291 Bit Score: 39.87 E-value: 6.85e-03
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PTZ00449 | PTZ00449 | 104 kDa microneme/rhoptry antigen; Provisional |
209-318 | 7.49e-03 | |||||
104 kDa microneme/rhoptry antigen; Provisional Pssm-ID: 185628 [Multi-domain] Cd Length: 943 Bit Score: 40.44 E-value: 7.49e-03
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Blast search parameters | ||||
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