NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1953423835|ref|XP_038307066|]
View 

fetal and adult testis-expressed transcript protein [Canis lupus familiaris]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Miff super family cl05292
Mitochondrial and peroxisomal fission factor Mff; This protein has a role in mitochondrial and ...
 89-182 6.35e-03

Mitochondrial and peroxisomal fission factor Mff; This protein has a role in mitochondrial and peroxisomal fission.


The actual alignment was detected with superfamily member pfam05644:

Pssm-ID: 461701  Cd Length: 292  Bit Score: 36.35  E-value: 6.35e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953423835  89 REPGHGDAHSQEHP-HGFQNMRfhyERNPETDMMTEIGLEELNGLEMEVMKRQLQVITSRLRALEDQGATWRHREALFFT 167
Cdd:pfam05644 200 RRSLRGGSASKRSSfPKHDSFR---EGLPTLDSTLDLTPDDMTLVDATSLRRQIIKLNRRLQLLEEENKERQKREMIMYS 276

                          90
                  ....*....|....*
gi 1953423835 168 VLVSACIANLWLWMR 182
Cdd:pfam05644 277 VTVAFWLLNTWIWLR 291
 
Name Accession Description Interval E-value
Miff pfam05644
Mitochondrial and peroxisomal fission factor Mff; This protein has a role in mitochondrial and ...
 89-182 6.35e-03

Mitochondrial and peroxisomal fission factor Mff; This protein has a role in mitochondrial and peroxisomal fission.


Pssm-ID: 461701  Cd Length: 292  Bit Score: 36.35  E-value: 6.35e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953423835  89 REPGHGDAHSQEHP-HGFQNMRfhyERNPETDMMTEIGLEELNGLEMEVMKRQLQVITSRLRALEDQGATWRHREALFFT 167
Cdd:pfam05644 200 RRSLRGGSASKRSSfPKHDSFR---EGLPTLDSTLDLTPDDMTLVDATSLRRQIIKLNRRLQLLEEENKERQKREMIMYS 276

                          90
                  ....*....|....*
gi 1953423835 168 VLVSACIANLWLWMR 182
Cdd:pfam05644 277 VTVAFWLLNTWIWLR 291
 
Name Accession Description Interval E-value
Miff pfam05644
Mitochondrial and peroxisomal fission factor Mff; This protein has a role in mitochondrial and ...
 89-182 6.35e-03

Mitochondrial and peroxisomal fission factor Mff; This protein has a role in mitochondrial and peroxisomal fission.


Pssm-ID: 461701  Cd Length: 292  Bit Score: 36.35  E-value: 6.35e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953423835  89 REPGHGDAHSQEHP-HGFQNMRfhyERNPETDMMTEIGLEELNGLEMEVMKRQLQVITSRLRALEDQGATWRHREALFFT 167
Cdd:pfam05644 200 RRSLRGGSASKRSSfPKHDSFR---EGLPTLDSTLDLTPDDMTLVDATSLRRQIIKLNRRLQLLEEENKERQKREMIMYS 276

                          90
                  ....*....|....*
gi 1953423835 168 VLVSACIANLWLWMR 182
Cdd:pfam05644 277 VTVAFWLLNTWIWLR 291
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH