|
Name |
Accession |
Description |
Interval |
E-value |
| PACT_coil_coil |
pfam10495 |
Pericentrin-AKAP-450 domain of centrosomal targeting protein; This domain is a coiled-coil ... |
3076-3154 |
6.88e-26 |
|
Pericentrin-AKAP-450 domain of centrosomal targeting protein; This domain is a coiled-coil region close to the C-terminus of centrosomal proteins that is directly responsible for recruiting AKAP-450 and pericentrin to the centrosome. Hence the suggested name for this region is a PACT domain (pericentrin-AKAP-450 centrosomal targeting). This domain is also present at the C-terminus of coiled-coil proteins from Drosophila and S. pombe, and that from the Drosophila protein is sufficient for targeting to the centrosome in mammalian cells. The function of these proteins is unknown but they seem good candidates for having a centrosomal or spindle pole body location. The final 22 residues of this domain in AKAP-450 appear specifically to be a calmodulin-binding domain indicating that this member at least is likely to contribute to centrosome assembly.
Pssm-ID: 463115 Cd Length: 77 Bit Score: 103.06 E-value: 6.88e-26
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1953366515 3076 YLRAESFRKALIYQKKYLLLLIGGFQDSEQETLSMIAHLGVFPSKAdkkTTTSRPFTRFRTAVRVVIAILRLRFLVKKW 3154
Cdd:pfam10495 2 LLREESFRKDLAYQKKYLLLLLGGYQACNKADLRLLAQMGVTPPDD---RPSRKPRRKLKSAALAVIAIARMKRLAREW 77
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2468-3024 |
6.19e-21 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 101.55 E-value: 6.19e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2468 LERLEKVVQEQEKSLEHLrasdrssllsEIQALRAQlRMTHLQNQEKLQQLCAALTSAEARGSRQEhQLRRQVELLAYKV 2547
Cdd:COG1196 188 LERLEDILGELERQLEPL----------ERQAEKAE-RYRELKEELKELEAELLLLKLRELEAELE-ELEAELEELEAEL 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2548 EQEKRIASDVQKTLTEEQEKASSVRKLLVVEQTVVRDLRSELRECKQDNERLLASLGEAQKEVLQLRSVLDSKESNLRAA 2627
Cdd:COG1196 256 EELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEEL 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2628 LQELESERGKERALQSRLEEAQLQHLQREGQSSKTLEELRASLEKQFAQSSQLcVALKHEQTAKDNLQKELQIEASRCEA 2707
Cdd:COG1196 336 EEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEEL-LEALRAAAELAAQLEELEEAEEALLE 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2708 LLAQERGQLSELQRSLEAEKGRSLELAAALRHERLLTEQLSRgprespAHHALLRKLKEEKSRAAELQARLEQVQRQQEA 2787
Cdd:COG1196 415 RLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEE------EEEALLELLAELLEEAALLEAALAELLEELAE 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2788 DVQKRRAELEREKEVRAaqarepgrclRREGHASQQQAGLEPLQAGLAAQEGRKDARRADVGPGRADAEMRPTGAKeklR 2867
Cdd:COG1196 489 AAARLLLLLEAEADYEG----------FLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVE---D 555
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2868 ELELQRQRDEHKIRQLQR-TVQALEAKEEAAQRPEAERLQEERLGLERVRQQLLCAAGLLTSFISRTVDRTISDWTSSNE 2946
Cdd:COG1196 556 DEVAAAAIEYLKAAKAGRaTFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAA 635
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1953366515 2947 KAVTSLLHTLEELKSELSTPSSSQKKMTAELQTQLVDVLLKDNDSLTKALRTVTQEKAELCRAVSQLEKSLKHHVLRR 3024
Cdd:COG1196 636 LRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAE 713
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2463-2920 |
1.64e-17 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 90.38 E-value: 1.64e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2463 EHSSLLERLEKVVQEQEKSLEHLRAS--DRSSLLSEIQALRAQLRMTHLQNQEKLQQLCAALTSAEARGSRQEHQLRRQV 2540
Cdd:COG1196 250 ELEAELEELEAELAELEAELEELRLEleELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELE 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2541 ELLAYKVEQEKRIASDVQKTLTEEQEKASSVRKLLVVEQTVVRDLRSELRECKQDNERLLASLGEAQKEVLQLRSvLDSK 2620
Cdd:COG1196 330 EELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEE-LEEA 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2621 ESNLRAALQELESERGKERALQSRLEEAQLQHLQREGQSSKTLEELRASLEKQFAQSSQLCVALKHEQTAKDNLQKELQI 2700
Cdd:COG1196 409 EEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAE 488
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2701 EASRCEALLAQERGQLSELQRSLEAEKGRSLELAAALRHERLLTEQLSRGPRESPAHHALLRKLKEEKSRAAELQARLEQ 2780
Cdd:COG1196 489 AAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKA 568
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2781 -----VQRQQEADVQKRRAELEREKEVRAAQAREPGRCLRREGHASQQQAGLEPLQAGLAA--------QEGRKDARRAD 2847
Cdd:COG1196 569 akagrATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAarleaalrRAVTLAGRLRE 648
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1953366515 2848 VGPGRADAEMRPTGAKEKLRELELQRQRDEHKIRQLQRTVQALEAKEEAAQRPEAERLQEERLGLERVRQQLL 2920
Cdd:COG1196 649 VTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEEL 721
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1365-1901 |
3.35e-17 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 89.23 E-value: 3.35e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1365 QEQSEARKQSEKDRAALLSQMKVFEAELEEQLSRHEACAKQAEELSALRQQMAALDKHLRSQRQFMDEQAVEREHEREEF 1444
Cdd:COG1196 242 EELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEEL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1445 QREIQRLEEQLRQAARprphgprvsDEEQLDEEVELLQEKLREKSDGFNELVIKKELADRQVMIQEEEIRRLEETNASCR 1524
Cdd:COG1196 322 EEELAELEEELEELEE---------ELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEAL 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1525 REAAQLREELERQRDAMKALQQDKEALQEKQMSNLLLVSTLQSKLDEGRcpvppadscpegpeVQLEAVQRALQQRESEV 1604
Cdd:COG1196 393 RAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEE--------------EALEEAAEEEAELEEEE 458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1605 LDLKEQLGKMKDDLVSKSDEVLHLNLELDAQSSRAAVSVRELQEENASLKAFLQNKEKEIMCVSEQLEAQLAGmgsgalR 1684
Cdd:COG1196 459 EALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIG------V 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1685 EVTYDRSSEIEELRSIIENLRENQQRLQKEKAEEMEQLHEVIERLQEELSLGAPAVPAA------------VDCELPAVP 1752
Cdd:COG1196 533 EAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAAlargaigaavdlVASDLREAD 612
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1753 APA-----------VGPEALAAAGAASRLFAEQEHRHGQALEALQQRLQAAEEAAAGQLAELERSAALREAEVQAMAS-- 1819
Cdd:COG1196 613 ARYyvlgdtllgrtLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEee 692
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1820 -----QIQAFEAALRAKEARLAERDLEIDAMKRQKLAHSAELETILAAFSRFRRTLERQPLAAEDEPPELQRLRVQCVRL 1894
Cdd:COG1196 693 leleeALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERL 772
|
....*..
gi 1953366515 1895 SRQLQVL 1901
Cdd:COG1196 773 EREIEAL 779
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
139-698 |
4.50e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 85.76 E-value: 4.50e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 139 ELEALRLSLSNMHTAQLELTQANLQKEKETALTELRAMLNGRHAQELALLRSRQQQELELAREQHAREQEEMRLrcsQET 218
Cdd:COG1196 221 ELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELL---AEL 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 219 AKLKEKLQSEMERNARAVESLKRdweserglclENLRRELSAKHRSELENLQDQFKRELSEQKAELEKIFQAKNQAECAL 298
Cdd:COG1196 298 ARLEQDIARLEERRRELEERLEE----------LEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEAL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 299 RTLEAQHEEALRQLREDLQSERcqyvqdLELRLRDQEVEKQLELESLRASYAELKAQSQEEIRRLWSQLESPRPDRQDAS 378
Cdd:COG1196 368 LEAEAELAEAEEELEELAEELL------EALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEE 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 379 ARTPHGEELEQRERECGVQQQRRGRRAEQESELGQSPEGAAERGREDPVLLEQRLQDATEEPSLESGGIGPSSMREGERR 458
Cdd:COG1196 442 EALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRG 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 459 EQRVGPSLQPELAEnhrcHLTAWTSSLEAQQQAGLVETQESEGEQREGLSEGPGQELTQVPVPCAQGTALKVDTE---VV 535
Cdd:COG1196 522 LAGAVAVLIGVEAA----YEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALargAI 597
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 536 ARGLGLEAEHRLKLLLLQTELKEEMDVLKLENRNLHEKLQHEVCLKEDLERV------------------KHSLVEDHRE 597
Cdd:COG1196 598 GAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVtlegeggsaggsltggsrRELLAALLEA 677
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 598 ELKKANERLQLVKQELKDKEAEWKVASEDLKRKAEEELTLMLHDLKEQAEAEKQSVINKFELREIKMRQLQDQQAAQILD 677
Cdd:COG1196 678 EAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELP 757
|
570 580
....*....|....*....|.
gi 1953366515 678 LEGSLVEQQGRLRQLEHGLEA 698
Cdd:COG1196 758 EPPDLEELERELERLEREIEA 778
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1369-1734 |
1.29e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 84.34 E-value: 1.29e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1369 EARKQSEKDRAALlSQMKVFEAELEEQLSRHEACAKQAEELSALRQQMAALDKHL--------RSQRQFMDEQAVEREHE 1440
Cdd:TIGR02168 176 ETERKLERTRENL-DRLEDILNELERQLKSLERQAEKAERYKELKAELRELELALlvlrleelREELEELQEELKEAEEE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1441 REEFQREIQRLEEQLrqaarprphgprvsdeEQLDEEVELLQEKLREKSDGFNELVIKKELADRQVMIQEEEIRRLEETN 1520
Cdd:TIGR02168 255 LEELTAELQELEEKL----------------EELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQL 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1521 ASCRREAAQLREELERQRDAMKALQQDKEALQEKQMSnlllvstLQSKLDEGRCPVPPADSCPEGPEVQLEAVQRALQQR 1600
Cdd:TIGR02168 319 EELEAQLEELESKLDELAEELAELEEKLEELKEELES-------LEAELEELEAELEELESRLEELEEQLETLRSKVAQL 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1601 ESEVLDLKEQLGkmkddlvsksdevlhlnlELDAQSSRAAVSVRELQEENASLKAFLQNKEKeimcvsEQLEAQLAGMGS 1680
Cdd:TIGR02168 392 ELQIASLNNEIE------------------RLEARLERLEDRRERLQQEIEELLKKLEEAEL------KELQAELEELEE 447
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 1953366515 1681 gALREVTYDRSSEIEELRSIIENLRENQQRLQKEKAEEME--QLHEVIERLQEELS 1734
Cdd:TIGR02168 448 -ELEELQEELERLEEALEELREELEEAEQALDAAERELAQlqARLDSLERLQENLE 502
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1199-1745 |
8.96e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 78.05 E-value: 8.96e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1199 QSLGLAVEGLLELALDSTRQLEEARQIHSRFEKEFSCKNEETAQVVRKQQQLLERLEEENAARTRLMLELHQAQGIIEGF 1278
Cdd:COG1196 228 ELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARL 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1279 KEEKASLQEALCRQETAEHGLAEELEGLRQQLQQAAQQQAELKEENSALWSQKEASAAEAEAreagtpapIAHEDSALRR 1358
Cdd:COG1196 308 EERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLE--------AEAELAEAEE 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1359 EVECLTQEQSEARKQSEKDRAALLSQMKVFEAELEEQLSRHEACAKQAEELSALRQQMAALDKHLRSQRQFMDEQAVERE 1438
Cdd:COG1196 380 ELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEE 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1439 HEREEFQREIQRLEEQLRQAArprphgpRVSDEEQLDEEVELLQEKLREKSDGFNELVIKKELADRQ--------VMIQE 1510
Cdd:COG1196 460 ALLELLAELLEEAALLEAALA-------ELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLrglagavaVLIGV 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1511 EEIRRLEETNASCRREAAQLREELERQRDAMKALQQDKEALQEKQMSNLLLVSTLQSKLDEGRcPVPPADSCPEGPEVQL 1590
Cdd:COG1196 533 EAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARG-AIGAAVDLVASDLREA 611
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1591 EAVQRALQQRESEVLDLKEQLGKMKDDLVSKSDEVLHLNLELDAQSSRAAVSVRELQEENASLKAFLQNKEKEimcvsEQ 1670
Cdd:COG1196 612 DARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEEL-----AE 686
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1953366515 1671 LEAQLAGMGSGALREVTYDRSSEIEELRSIIENLRENQQRLQKEKAEEMEQLHEVIERLQEELSLGAPAVPAAVD 1745
Cdd:COG1196 687 RLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPD 761
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
2477-2918 |
1.55e-12 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 74.41 E-value: 1.55e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2477 EQEKSLEHLRASDRSSLLSEIQalRAQLRMTHLQNQEKLQQLCAALTSAEARGSRQEHQLRRQVELLAykveQEKRIASD 2556
Cdd:PTZ00121 1209 EEERKAEEARKAEDAKKAEAVK--KAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKA----EEARKADE 1282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2557 VQKTltEEQEKASSVRKLLVVEQTVVRDLRSELR----ECKQDNERLLASLGEAQKEVLQLRSVLDSKESNLRAALQELE 2632
Cdd:PTZ00121 1283 LKKA--EEKKKADEAKKAEEKKKADEAKKKAEEAkkadEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAE 1360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2633 SERGKERALQSRLEEAQ--LQHLQREGQSSKTLEELRASLEKQFAQSSQLCVALKHEQTAKDNLQKELQIEASRCEALLA 2710
Cdd:PTZ00121 1361 AAEEKAEAAEKKKEEAKkkADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKA 1440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2711 QERGQLSELQRslEAEKGRSLELAAALRHERLLTEQLSRGPRESPAHHALLRKLKEEKSRAAELQARLEQVQRQQEAdvq 2790
Cdd:PTZ00121 1441 EEAKKADEAKK--KAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEA--- 1515
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2791 KRRAELEREKEVRAAQAREPGRCLRReghaSQQQAGLEPLQAglaAQEGRKDARRADVGPGRADAEMRPTGAK--EKLRE 2868
Cdd:PTZ00121 1516 KKAEEAKKADEAKKAEEAKKADEAKK----AEEKKKADELKK---AEELKKAEEKKKAEEAKKAEEDKNMALRkaEEAKK 1588
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 1953366515 2869 LELQRQRDEHKIRQLQRTVQALEAKEEAAQRPEAERL---QEERLGLERVRQQ 2918
Cdd:PTZ00121 1589 AEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELkkaEEEKKKVEQLKKK 1641
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2468-2808 |
4.96e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 72.40 E-value: 4.96e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2468 LERLEKVVQEQEKSLEHLrasdrssllsEIQALRAqlrmthlqnqEKLQQLCAALTSAEARgsrqehqlrrqveLLAYKV 2547
Cdd:TIGR02168 188 LDRLEDILNELERQLKSL----------ERQAEKA----------ERYKELKAELRELELA-------------LLVLRL 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2548 EQEKRIASDVQKTLTEEQEKASSVRKLLVVEQTVVRDLRSELRECKQdnerllaSLGEAQKEVLQLRSVLDSKESNLRAA 2627
Cdd:TIGR02168 235 EELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEE-------EIEELQKELYALANEISRLEQQKQIL 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2628 LQELESergkeraLQSRLEEAQLQhLQREGQSSKTLEELRASLEKQFAQSSQLCVALKHEQTAKDNLQKELQIEASRCEA 2707
Cdd:TIGR02168 308 RERLAN-------LERQLEELEAQ-LEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEE 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2708 LLAQERGQLSELQRSLEAEKGRSLELAAAL-----RHERLLTEQLSRGPR-ESPAHHALLRKLKEEKSRAAELQARLEQV 2781
Cdd:TIGR02168 380 QLETLRSKVAQLELQIASLNNEIERLEARLerledRRERLQQEIEELLKKlEEAELKELQAELEELEEELEELQEELERL 459
|
330 340 350
....*....|....*....|....*....|.
gi 1953366515 2782 QRQ----QEADVQKRRAELEREKEVRAAQAR 2808
Cdd:TIGR02168 460 EEAleelREELEEAEQALDAAERELAQLQAR 490
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1255-1925 |
8.65e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 71.63 E-value: 8.65e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1255 EEENAARTRLMLELHQAQGIIEGFKEEKASLQEALCRQETAEHGLAEELEGLRQQLQQAAQQQAELKEENSALWSQKEAS 1334
Cdd:TIGR02168 221 ELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1335 AAEAEAreagtpapIAHEDSALRREVECLTQEQSEARKQSEKDRAALLSQmkvfEAELEEQLSRHEACAKQAEELSALRQ 1414
Cdd:TIGR02168 301 EQQKQI--------LRERLANLERQLEELEAQLEELESKLDELAEELAEL----EEKLEELKEELESLEAELEELEAELE 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1415 QMAALDKHLRSQRQFMDEQAVEREHEREEFQREIQRLEEQLRQAA--RPRPHGPRVSDEEQLDE-EVELLQEKLREKSDG 1491
Cdd:TIGR02168 369 ELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEdrRERLQQEIEELLKKLEEaELKELQAELEELEEE 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1492 FNELVIKKELADRQVMIQEEEIRRLEETNASCRREAAQLREELerqrDAMKALQQDKEALQEkQMSNLLLVstlQSKLDE 1571
Cdd:TIGR02168 449 LEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARL----DSLERLQENLEGFSE-GVKALLKN---QSGLSG 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1572 GRCPVPPADSCPEGPEVQLEAVqralqqresevldlkeqLGKMKDDLVSKSDEVLHLNLELDAQSSRAAVSVREL----- 1646
Cdd:TIGR02168 521 ILGVLSELISVDEGYEAAIEAA-----------------LGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLdsikg 583
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1647 QEENASLKAFLQNKE------KEIMCVSEQLEAQLAGMGSGAL-------------------REVTYD------------ 1689
Cdd:TIGR02168 584 TEIQGNDREILKNIEgflgvaKDLVKFDPKLRKALSYLLGGVLvvddldnalelakklrpgyRIVTLDgdlvrpggvitg 663
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1690 ----RSSEIEELRSIIENLRENQQRLQkekaEEMEQLHEVIERLQEELSLGAPAVPAAVDCELPAVPAPAVGPEALAAAG 1765
Cdd:TIGR02168 664 gsakTNSSILERRREIEELEEKIEELE----EKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLE 739
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1766 AASRLFAEQEHRHGQALEALQQRLQAAEEAAAGQLAELERSAALR---EAEVQAMASQIQAFEAALRAKEARLAERDLEI 1842
Cdd:TIGR02168 740 AEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIeelEAQIEQLKEELKALREALDELRAELTLLNEEA 819
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1843 DAMKRQKLAHSAELETILAAFSRFRRTLERQPLAAEDEPPELQRLRVQCVRLSRQLQVLnqrflrcQKEADKQQARGARL 1922
Cdd:TIGR02168 820 ANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEAL-------LNERASLEEALALL 892
|
...
gi 1953366515 1923 RPR 1925
Cdd:TIGR02168 893 RSE 895
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
2526-2909 |
1.79e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 67.47 E-value: 1.79e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2526 EARGSRQEHQLRRQVELLAYKVEqEKRIASDVQKTLTEEQEKASSVRKllvveQTVVRDLRSELRECKQDNERLLASLGE 2605
Cdd:PTZ00121 1458 KAEEAKKKAEEAKKADEAKKKAE-EAKKADEAKKKAEEAKKKADEAKK-----AAEAKKKADEAKKAEEAKKADEAKKAE 1531
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2606 AQKEVLQLRSVLDSKESNLRAALQELESERGKERALQSRLEEAQLQHLQREGQSSKTLEELRASLEKQFAQSSQlcvALK 2685
Cdd:PTZ00121 1532 EAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEK---KMK 1608
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2686 HEQTAKDNLQKELQIEASRCEallaQERGQLSELQRSLEAEKGRSLELAAALRHERLLTEQLSRGPRESPAHHALLRKLK 2765
Cdd:PTZ00121 1609 AEEAKKAEEAKIKAEELKKAE----EEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAE 1684
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2766 EEKSRAAELQAR-------LEQVQRQQEADVQKRRaELEREKEVRAAQAREpgrcLRREGHASQQQagleplqaglaAQE 2838
Cdd:PTZ00121 1685 EDEKKAAEALKKeaeeakkAEELKKKEAEEKKKAE-ELKKAEEENKIKAEE----AKKEAEEDKKK-----------AEE 1748
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1953366515 2839 GRKDarradvgpgradaemrpTGAKEKLRELELQRQRDEHKIRQLQRTVqaleAKEEAAQRPEAERLQEER 2909
Cdd:PTZ00121 1749 AKKD-----------------EEEKKKIAHLKKEEEKKAEEIRKEKEAV----IEEELDEEDEKRRMEVDK 1798
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
566-1066 |
1.91e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 67.27 E-value: 1.91e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 566 ENRNLHEKLQHEVCLKEDLERVKHSLVEDHREELKKANERLQLVKQELKDKEAEWKVASEDLKRKAE--EELTLMLHDLK 643
Cdd:COG1196 250 ELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEErlEELEEELAELE 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 644 EQAEAEKQSVINKfELREIKMRQLQDQQAAQILDLEGSLVEQQGRLRQLEHGLEAEEcprcghcgqepAGRVAPADQDWE 723
Cdd:COG1196 330 EELEELEEELEEL-EEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELA-----------EELLEALRAAAE 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 724 LATRRLREDCALQ-LMQAQSRFLKERKELTEKFTAEQDAL--LQEAQEKHACDMRLLQERHQQHVLSLTAQLEARRRAEV 800
Cdd:COG1196 398 LAAQLEELEEAEEaLLERLERLEEELEELEEALAELEEEEeeEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEA 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 801 EELKASVESERWALAEARVAELQTEHAAAISALEARHSALLGSLESRHLSEVQAMREEHRQALEQLRVDLEKQLQEKEAS 880
Cdd:COG1196 478 ALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDE 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 881 HPTPLTQALEKHPLSHGQELPPVEGGLRTQTSSGQLEGVKAPVPPEVQGAQQEGAPVPAEVEAQRPALLAELRQETGKQQ 960
Cdd:COG1196 558 VAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALR 637
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 961 LHCQEEPEVLECPSEPFLEQQILQPKGEFESEKKVALHEKEIHGLECAQAQSLYQKEKESLFLQLQEKNNQILQLKEQIL 1040
Cdd:COG1196 638 RAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERL 717
|
490 500
....*....|....*....|....*.
gi 1953366515 1041 SLSHEVEERRRDLEQLQQRRERENQE 1066
Cdd:COG1196 718 EEELEEEALEEQLEAEREELLEELLE 743
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2466-3029 |
2.50e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.00 E-value: 2.50e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2466 SLLERLEKVvQEQEKSLEHLRASdRSSLLSEIQALRAQLRMTHLQNQEKLQQLCAALTSAEARGSRQEHQLRRQVELLAY 2545
Cdd:TIGR02168 236 ELREELEEL-QEELKEAEEELEE-LTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLAN 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2546 KVEQEKRIASD---VQKTLTEEQEKASSVRKLLVVEQTVVRDLRSELRECKQDNERLLASLGEAQKEVLQLRSVLDSKE- 2621
Cdd:TIGR02168 314 LERQLEELEAQleeLESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLEl 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2622 ---------SNLRAALQELESERGKER----ALQSRLEEAQLQHLQRE-GQSSKTLEELRASLEKQFAQSSQLCVALKHE 2687
Cdd:TIGR02168 394 qiaslnneiERLEARLERLEDRRERLQqeieELLKKLEEAELKELQAElEELEEELEELQEELERLEEALEELREELEEA 473
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2688 QTAKDNLQKELQIEASRCEALLAQER--------------------GQLSELQRSLEAEKGRSLELAAALRhERLL---- 2743
Cdd:TIGR02168 474 EQALDAAERELAQLQARLDSLERLQEnlegfsegvkallknqsglsGILGVLSELISVDEGYEAAIEAALG-GRLQavvv 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2744 -TEQLSRGPRESPAHHALLRK--LKEEKSRAAELQARLEQVQRQQEADVQKRRAELEREKEVRAAQAREPGRCLRREGHA 2820
Cdd:TIGR02168 553 eNLNAAKKAIAFLKQNELGRVtfLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLD 632
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2821 S-QQQAGLEPLQAGLAAQEGRKDARRADVGPGRADAEMRPTGAKEKLRELELQRQRDEHKIRQLQRTVQALEAKEEAAQr 2899
Cdd:TIGR02168 633 NaLELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELE- 711
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2900 peaERLQEERLGLERVRQQLLCAAGLLTSFisRTVDRTISDWTSSNEKAVTSLLHTLEELKSELSTPSSSQKKMTAELQT 2979
Cdd:TIGR02168 712 ---EELEQLRKELEELSRQISALRKDLARL--EAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEE 786
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|..
gi 1953366515 2980 --QLVDVLLKDNDSLTKALRTVTQEKAELCRAVSQLEKSLKHHVLRRGVCSK 3029
Cdd:TIGR02168 787 leAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATER 838
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1218-1732 |
3.17e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 66.50 E-value: 3.17e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1218 QLEEARQIHSRFEKEFSCKNEETAQVVRKQQQL-------LERLEEENAARTRLMLELHQAQGIIEGFKEEKASLQEALC 1290
Cdd:COG1196 268 ELEELRLELEELELELEEAQAEEYELLAELARLeqdiarlEERRRELEERLEELEEELAELEEELEELEEELEELEEELE 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1291 RQETAEHGLAEELEGLRQQLQQAAQQQAELKEENSALWSQKEASAAEAEAREAGTPAPIAHEDSALRREVEcLTQEQSEA 1370
Cdd:COG1196 348 EAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLER-LEEELEEL 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1371 RKQSEKDRAALLSQMKVFEAELEEQLSRHEACAKQAEELSALRQQMAALDKHLRSQRQFMDEQAVER------EHEREEF 1444
Cdd:COG1196 427 EEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLlllleaEADYEGF 506
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1445 QREIQRLEEQLRQAARPRPHGPRVSDEEQLDEEVE-----LLQEKLREKSDGFNELV--IKKELADRQVMIQEEEIRRLE 1517
Cdd:COG1196 507 LEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEaalaaALQNIVVEDDEVAAAAIeyLKAAKAGRATFLPLDKIRARA 586
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1518 ETNASCRR----EAAQLREELERQRDAMKALQQDKEALQEKQMSNLLLVSTLQSKLDEGRCPVPPADscpEGPEVQLEAV 1593
Cdd:COG1196 587 ALAAALARgaigAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEG---EGGSAGGSLT 663
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1594 QRALQQRESEVLDLKEQLGKMKDDLVSKSDEVLHLNLELDAQSSRAAVSVRELQEENASLKAFLQNKEKEIMCVSEQLEA 1673
Cdd:COG1196 664 GGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLE 743
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1674 QLAGMGSGALREVTYDRS-----SEIEELRSIIENL-----------RENQQR---LQKEKA---EEMEQLHEVIERLQE 1731
Cdd:COG1196 744 EEELLEEEALEELPEPPDleeleRELERLEREIEALgpvnllaieeyEELEERydfLSEQREdleEARETLEEAIEEIDR 823
|
.
gi 1953366515 1732 E 1732
Cdd:COG1196 824 E 824
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1433-1731 |
5.16e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.85 E-value: 5.16e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1433 QAVEREHEREEFQREIQRLEEQLRQAARPRPhgpRVSDE-EQLDEEVELLQEKLREKSDGFNELVIKKELADRQVMIQEE 1511
Cdd:TIGR02168 671 SILERRREIEELEEKIEELEEKIAELEKALA---ELRKElEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEE 747
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1512 EIRRLEETNASCRREAAQLREELERQRDAMKALQQDKEALQEKqmsnlllVSTLQSKLDEGRcpvppadscpegpeVQLE 1591
Cdd:TIGR02168 748 RIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQ-------IEQLKEELKALR--------------EALD 806
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1592 AVQRALQQRESEVLDLKEQLGKMKDDLVSKSDEvlhlNLELDAQSSRAAVSVRELQEENASLKAFLQNKEKEIMCVSEQL 1671
Cdd:TIGR02168 807 ELRAELTLLNEEAANLRERLESLERRIAATERR----LEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNER 882
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1672 EAQLAGMGSgalrevtydRSSEIEELRSIIENLRENQQRLQKEKAEEMEQLHEVIERLQE 1731
Cdd:TIGR02168 883 ASLEEALAL---------LRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEG 933
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2586-2907 |
6.21e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.46 E-value: 6.21e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2586 RSELRECKQDNERLLASLGEAQKEVLQLRSVLDSKESNLRAALQELESERGKERALQ---SRLEEAQLQHLQREGQSSKT 2662
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRkdlARLEAEVEQLEERIAQLSKE 755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2663 LEELRASLEKQFAQSSQLCVALKHEQTAKDNLQKELQieasRCEALLAQERGQLSELQRSLEAEKGRSLElaaalrherl 2742
Cdd:TIGR02168 756 LTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIE----QLKEELKALREALDELRAELTLLNEEAAN---------- 821
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2743 LTEQLSRGPRESPAHHALLRKLKEEKSRAAELQARLEQVQRQQEADVQKRRAELEREKEVRAAQAREPGRCLRREGHASQ 2822
Cdd:TIGR02168 822 LRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSE 901
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2823 QQAGLEPLQAGLAAQEGRKDARRADVGPGRADAEMRPTGAKEKLRE---------------LELQRQRDEHKIRQLQRTV 2887
Cdd:TIGR02168 902 ELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEeysltleeaealenkIEDDEEEARRRLKRLENKI 981
|
330 340
....*....|....*....|....*
gi 1953366515 2888 QA-----LEAKEEAAQrpEAERLQE 2907
Cdd:TIGR02168 982 KElgpvnLAAIEEYEE--LKERYDF 1004
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2427-2892 |
6.39e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 65.34 E-value: 6.39e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2427 LDWRGEFLQAVQEAFGKEREMLRAELQprpcgsapgEHSSLLERLEKVVQEQEKSLEHLRASDRSSLLSEIQALRAQLRm 2506
Cdd:COG1196 321 LEEELAELEEELEELEEELEELEEELE---------EAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLE- 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2507 tHLQNQEKLQQLCAALTSAEARGSRQEHQLRRQVELLAYKVEQEKRIASDVQKTLTEEQEKASSVRKLLVVEQTVVRDLR 2586
Cdd:COG1196 391 -ALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELL 469
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2587 SELRECKQDNERLLASLGEAQKEVLQLRSVLDSKESNLRAAL------------QELESERGKERALQSRLEEAQLQHLQ 2654
Cdd:COG1196 470 EEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKaalllaglrglaGAVAVLIGVEAAYEAALEAALAAALQ 549
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2655 REG-QSSKTLEELRASLEKQFAQSSQLCVALKHEQTAKDNLQKELQIEASRCEALLAQERGQLSELQRSLEAEKGRSLEL 2733
Cdd:COG1196 550 NIVvEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVA 629
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2734 AAALRHERLLTEQLSRGPRESPAHHALLRKLKEEKSRAAELQARLEQVQRQQEADVQKRRAELEREKEVRAAQAREPGRC 2813
Cdd:COG1196 630 ARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEEREL 709
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1953366515 2814 LRREGHASQQQAGLEPLQAGLAAQEGRKDARRADVGPGRADAEMRPTGAKEKLRELelqrqrdEHKIRQLQRTVQALEA 2892
Cdd:COG1196 710 AEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEEL-------ERELERLEREIEALGP 781
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1186-1518 |
1.05e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.69 E-value: 1.05e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1186 SSLEYEQPIRRiyqsLGLAVEGLLELALDSTRQLEEARQIHSRFEKEFSCKNEETAQVVRKQQQLLERLEEENAARTRLM 1265
Cdd:TIGR02168 671 SILERRREIEE----LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLE 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1266 LELHQAQGIIEGFKEEKASLQEALCRQETAEHGLAEELEGLRQQLQQAAQQQAELKEENSALWSQKEASAAEAEAREAGT 1345
Cdd:TIGR02168 747 ERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERL 826
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1346 pAPIAHEDSALRREVECLtQEQSEARKQSEKDRAALLSQMKVFEAELEEQLsrheacakqaEELSALRQQMAALDKHLRS 1425
Cdd:TIGR02168 827 -ESLERRIAATERRLEDL-EEQIEELSEDIESLAAEIEELEELIEELESEL----------EALLNERASLEEALALLRS 894
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1426 QRQFMDEQAVEREHEREEFQREIQRLEEQLRQAARprphgprvsDEEQLDEEVELLQEKLREK-SDGFNELVIKKELADR 1504
Cdd:TIGR02168 895 ELEELSEELRELESKRSELRRELEELREKLAQLEL---------RLEGLEVRIDNLQERLSEEySLTLEEAEALENKIED 965
|
330
....*....|....
gi 1953366515 1505 QVMIQEEEIRRLEE 1518
Cdd:TIGR02168 966 DEEEARRRLKRLEN 979
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
2466-2809 |
1.21e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 64.70 E-value: 1.21e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2466 SLLERLEKVvQEQEKSLEHLRAS---DRSSLLSEIQALRAQLRMTHLQNQEKLQQLCAALTSAEARGSRQEhQLRRQVEL 2542
Cdd:TIGR02169 671 SEPAELQRL-RERLEGLKRELSSlqsELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLE-ELEEDLSS 748
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2543 LAYKVEQEKRIASDVQKTLTEEQEKASSVRKLLvvEQTVVRDLRSELREckqdnerLLASLGEAQKEVLQLRSVLDSKES 2622
Cdd:TIGR02169 749 LEQEIENVKSELKELEARIEELEEDLHKLEEAL--NDLEARLSHSRIPE-------IQAELSKLEEEVSRIEARLREIEQ 819
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2623 NLRAALQELESERGKERALQSRLEEAQLQHLQREGQ---SSKTLEELRASLEKQFAQSSQLCVALKHEQTAKDNLQK--- 2696
Cdd:TIGR02169 820 KLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEienLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAqlr 899
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2697 ELQIEASRCEALLAQERGQLSELQRSLEAEKGRSLELaaalrherlltEQLSRGPRESPAHHALLRKLKEEKSRAAELQA 2776
Cdd:TIGR02169 900 ELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEI-----------EDPKGEDEEIPEEELSLEDVQAELQRVEEEIR 968
|
330 340 350
....*....|....*....|....*....|....*.
gi 1953366515 2777 RLEQVQR---QQEADVQKRRAELEREKEVRAAQARE 2809
Cdd:TIGR02169 969 ALEPVNMlaiQEYEEVLKRLDELKEKRAKLEEERKA 1004
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
2463-2917 |
1.61e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 64.39 E-value: 1.61e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2463 EHSSLLERLEKVVQEQEKSLEHLRA-SDRSSLLSEIQALRAQLRMTHLQNQEKLQQLCAALTSAE---ARGSRQEHQLRR 2538
Cdd:PTZ00121 1312 EEAKKADEAKKKAEEAKKKADAAKKkAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAkkkADAAKKKAEEKK 1391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2539 QVELLAYKVEQEKRIASDVQKTlTEEQEKASSVRKLlVVEQTVVRDLRSELRECKQDNErlLASLGEAQKEVLQLRSvlD 2618
Cdd:PTZ00121 1392 KADEAKKKAEEDKKKADELKKA-AAAKKKADEAKKK-AEEKKKADEAKKKAEEAKKADE--AKKKAEEAKKAEEAKK--K 1465
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2619 SKESNLRAALQELESERGKERALQSRLEEAQ--LQHLQREGQSSKTLEELRASLEKQFAQSSQLCVALKHEQTAKDNLQK 2696
Cdd:PTZ00121 1466 AEEAKKADEAKKKAEEAKKADEAKKKAEEAKkkADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEK 1545
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2697 ELQIEASRCEALLAQERGQLSELQRSLEAEKGRSLELAAALRH-ERLLTEQLSRGPRESpahhallRKLKEEKSRAA-EL 2774
Cdd:PTZ00121 1546 KKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKaEEARIEEVMKLYEEE-------KKMKAEEAKKAeEA 1618
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2775 QARLEQVQRQQEADVQKRRAELEREKEVRAAQ---AREPGRCLRREGHASQQQAGLEPLQAGLAAQEGRKDARRA---DV 2848
Cdd:PTZ00121 1619 KIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEelkKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEAlkkEA 1698
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1953366515 2849 GPGRADAEMRPTGAKEKLRELELQRQRDEHKIR--QLQRTVQALEAKEEAAQRPEAERLQEERLGLERVRQ 2917
Cdd:PTZ00121 1699 EEAKKAEELKKKEAEEKKKAEELKKAEEENKIKaeEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKK 1769
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
172-876 |
3.94e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 63.24 E-value: 3.94e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 172 ELRAMLNGRHAQELALLRSRQQQElELAREQHAREQEEMR----LRCSQETAKLKEKLQSEMERNARAVESLKRDWESER 247
Cdd:PTZ00121 1150 DAKRVEIARKAEDARKAEEARKAE-DAKKAEAARKAEEVRkaeeLRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEA 1228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 248 GLCLENLRRELSAKHRSELENLQDQFkRELSEQKAELEKIFQAKNQAECALRTLEAQHEEALRQLREDLQSERCQYVQDL 327
Cdd:PTZ00121 1229 VKKAEEAKKDAEEAKKAEEERNNEEI-RKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEA 1307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 328 ----ELRLRDQEVEKQLELESLRASYAELKAQSQEEIRRLWSQLESPRPDRQDASARTPHGEELEQRErecgvqQQRRGR 403
Cdd:PTZ00121 1308 kkkaEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEE------AKKKAD 1381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 404 RAEQESELGQSPEGAAERGREDPVLLEQRLQDATEEPSLESGGIGPSSMREGERREQRvgpslqpelAENHRchltawtS 483
Cdd:PTZ00121 1382 AAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKK---------AEEAK-------K 1445
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 484 SLEAQQQAGlvETQESEGEQREGLSEGPGQELTQVPVPCAQGTALKVDTEvvarglglEAEHRLKLLLLQTELKEEMDvl 563
Cdd:PTZ00121 1446 ADEAKKKAE--EAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAE--------EAKKKADEAKKAAEAKKKAD-- 1513
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 564 klENRNLHEKLQHEVCLKEDLERVKHSLVEdhREELKKANErlqlVKQELKDKEAEWKVASEDlKRKAEEELTLMLHDLK 643
Cdd:PTZ00121 1514 --EAKKAEEAKKADEAKKAEEAKKADEAKK--AEEKKKADE----LKKAEELKKAEEKKKAEE-AKKAEEDKNMALRKAE 1584
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 644 EQAEAEKQSVINKFELREiKMRQLQDQQAAQildlegslvEQQGRLRQLEHGLEAEECPRCGHCGQEPAGRVAPADQdwe 723
Cdd:PTZ00121 1585 EAKKAEEARIEEVMKLYE-EEKKMKAEEAKK---------AEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEE--- 1651
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 724 laTRRLREDCALQLMQAQSRFLKERKELTEKFTAEQD------ALLQEAQEKHACDMRLLQERHQQHVLSLTAQLEARRR 797
Cdd:PTZ00121 1652 --LKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDekkaaeALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENK 1729
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1953366515 798 AEVEELKASVESERWALAEARVAELQTEHAAAISALEARHSallgslESRHLSEVQAMREEHRQALEQLRVDLEKQLQE 876
Cdd:PTZ00121 1730 IKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKA------EEIRKEKEAVIEEELDEEDEKRRMEVDKKIKD 1802
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1218-1907 |
1.01e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 61.61 E-value: 1.01e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1218 QLEEARQIHSRFEKEFSCKNEETAQVVRKQQQLLERLEEENAARTRLMLELHQAQGIIEGFKEEKASLQEALCRQETAEH 1297
Cdd:TIGR02168 268 KLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLE 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1298 GLAEELEGLRQQLQQAAQQQAELKEENSAL------WSQKEASAAEAEAREAGTPAPIAHEDSALRREVECLTQEQSEAR 1371
Cdd:TIGR02168 348 ELKEELESLEAELEELEAELEELESRLEELeeqletLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELL 427
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1372 KQ-SEKDRAALLSQMKVFEAELEEQLSRHEACAKQAEELSALRQQMAALDKHLRSQRQFMDEQAVEREHEREEFQREIQR 1450
Cdd:TIGR02168 428 KKlEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEG 507
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1451 LEEQLRQAARPRPHGPRVSDEEQLDEEVEL-LQEKLREKSDgfNELVIKKELADRQV--MIQEEEIRR--LEETNASCRR 1525
Cdd:TIGR02168 508 VKALLKNQSGLSGILGVLSELISVDEGYEAaIEAALGGRLQ--AVVVENLNAAKKAIafLKQNELGRVtfLPLDSIKGTE 585
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1526 EAAQLREELERQRDAMKALQQDKEALQEKQ------MSNLLLVSTLQSKLD-------EGRCPVPPADSCPEGPEVQLEA 1592
Cdd:TIGR02168 586 IQGNDREILKNIEGFLGVAKDLVKFDPKLRkalsylLGGVLVVDDLDNALElakklrpGYRIVTLDGDLVRPGGVITGGS 665
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1593 VQRA--LQQRESEVLDLKEQLGKMKDDLvsksdevlhlnLELDAQSSRAAVSVRELQEENASLKAFLQNKEKEIMCVSEQ 1670
Cdd:TIGR02168 666 AKTNssILERRREIEELEEKIEELEEKI-----------AELEKALAELRKELEELEEELEQLRKELEELSRQISALRKD 734
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1671 LEAqlAGMGSGALREVTYDRSSEIEELRSIIENLRENQQRLQKEKAE---EMEQLHEVIERLQEELSLgapavpaavdce 1747
Cdd:TIGR02168 735 LAR--LEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEaeaEIEELEAQIEQLKEELKA------------ 800
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1748 lpavpapavgpEALAAAGAASRLFAEQEHRHGQALEalQQRLQAAEEAAAGQLAELERSAALREAEVQAMASQIQAFEAA 1827
Cdd:TIGR02168 801 -----------LREALDELRAELTLLNEEAANLRER--LESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEEL 867
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1828 LRAKEARLAERDLEIDAMKRQKLAHSAELETilaaFSRFRRTLERQPLAAEDeppELQRLRVQCVRLSRQLQVLNQRFLR 1907
Cdd:TIGR02168 868 IEELESELEALLNERASLEEALALLRSELEE----LSEELRELESKRSELRR---ELEELREKLAQLELRLEGLEVRIDN 940
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
2416-2916 |
1.11e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 61.70 E-value: 1.11e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2416 QKGEQEPPDPGLDWRGEFLQAVQEAFGKEREMLRAELQPRPCGSAPGEHSSLLERLEKVvqEQEKSLEHLRASDRSSLLS 2495
Cdd:PTZ00121 1096 AFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRV--EIARKAEDARKAEEARKAE 1173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2496 EIQALRAQLRMTHLQNQEKLQQLCAALTSAEARGSRQEhqlRRQVEllAYKVEQEKRI-----ASDVQKTlTEEQEKASS 2570
Cdd:PTZ00121 1174 DAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEE---RKAEE--ARKAEDAKKAeavkkAEEAKKD-AEEAKKAEE 1247
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2571 VRKLLVVEQTVVRDLRSELR--------------ECKQDNERLLASLGEAQKEVLQLRSVLDSKESNLRA--ALQELESE 2634
Cdd:PTZ00121 1248 ERNNEEIRKFEEARMAHFARrqaaikaeearkadELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKAdeAKKKAEEA 1327
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2635 RGKERALQSRLEEAQLQHLQREGQSSKTLEELRASLEKQFAQSSQLCVALKHEQTAKDNLQKELQIEASRCEAllaQERG 2714
Cdd:PTZ00121 1328 KKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKA---EEDK 1404
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2715 QLSELQRSLEAEKGRSLELAAALRHERLLTEQLSRGPRESPAHHAllRKLKEEKSRAAELQARLEQVQRQQEADVQKRRA 2794
Cdd:PTZ00121 1405 KKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEA--KKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEA 1482
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2795 ELEREKEVRAAQAREPGRCLRREGHASQQQAGLEPLQAGLAAQEGRK--DARRADvgpgradaEMRPTGAKEKLRELelq 2872
Cdd:PTZ00121 1483 KKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKaeEAKKAD--------EAKKAEEKKKADEL--- 1551
|
490 500 510 520
....*....|....*....|....*....|....*....|....
gi 1953366515 2873 rqRDEHKIRQLQRTVQALEAKEEAAQRPEAERLQEERLGLERVR 2916
Cdd:PTZ00121 1552 --KKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEAR 1593
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1421-1733 |
1.32e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 61.23 E-value: 1.32e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1421 KHLRSQRQFMDEQAVEREHEREEFQREIQRLEEQLRQAAR-----PRPHGPRVSDEEQLDEEVELLQEKLREKSDGFNEL 1495
Cdd:TIGR02168 680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKeleelSRQISALRKDLARLEAEVEQLEERIAQLSKELTEL 759
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1496 VIKKELADRQVMIQEEEIRRLEETNASCRREAAQLREELERQRDAMKALQQDKEALQEKQMSNLLLVSTLQSKLDEGRCP 1575
Cdd:TIGR02168 760 EAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERR 839
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1576 VppadscpEGPEVQLEAVQRALQQRESEVLDLKEQLGKMKDDLVSKSDEVLHLNLELDAQSSR---AAVSVRELQEENAS 1652
Cdd:TIGR02168 840 L-------EDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSEleeLSEELRELESKRSE 912
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1653 LKAFLQNKEKEImcvsEQLEAQLAGMGSgalrevtydrsseieELRSIIENLRENQQRLQKEKAEEMEQLHEVIERLQEE 1732
Cdd:TIGR02168 913 LRRELEELREKL----AQLELRLEGLEV---------------RIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRR 973
|
.
gi 1953366515 1733 L 1733
Cdd:TIGR02168 974 L 974
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1217-1888 |
1.35e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 61.31 E-value: 1.35e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1217 RQLEEARQIHSRFEKEFSCKNEET--AQVVRKQQQL-----LERLEE----ENAARTRLMLELHQAQGIIEGFKEEKASL 1285
Cdd:PTZ00121 1158 RKAEDARKAEEARKAEDAKKAEAArkAEEVRKAEELrkaedARKAEAarkaEEERKAEEARKAEDAKKAEAVKKAEEAKK 1237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1286 QEALCRQETAEHGLAEELEGLRQQLQQAAQQQAELKEENsalwSQKEASAAEAEAREAGTPAPIAHEdsalRREVECLTQ 1365
Cdd:PTZ00121 1238 DAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEE----ARKADELKKAEEKKKADEAKKAEE----KKKADEAKK 1309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1366 EQSEARKQSEKDRAALLSQMKVFEAELEEQLSRHEACAKQAEELSALRQQMAALDKHLRSQRQfmDEQAVEREHEREEFQ 1445
Cdd:PTZ00121 1310 KAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKK--KEEAKKKADAAKKKA 1387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1446 REIQRLEEQLRQAARPRPHGPRVSDEEQLDEEVELLQEKLREKSDGfNELVIKKELADR--QVMIQEEEIRRLEETN--A 1521
Cdd:PTZ00121 1388 EEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKA-DEAKKKAEEAKKadEAKKKAEEAKKAEEAKkkA 1466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1522 SCRREAAQLREELERQRDAMKALQQDKEAlqEKQMSNLLLVSTLQSKLDEGRcpvppadscpegpevQLEAVQRALQQRE 1601
Cdd:PTZ00121 1467 EEAKKADEAKKKAEEAKKADEAKKKAEEA--KKKADEAKKAAEAKKKADEAK---------------KAEEAKKADEAKK 1529
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1602 SEVLDLKEQLGKMKDdlVSKSDEVlhlnleLDAQSSRAAVSVRELQE-ENASLKAFLQNKEKEIMCVSEQLEAQLAGMGS 1680
Cdd:PTZ00121 1530 AEEAKKADEAKKAEE--KKKADEL------KKAEELKKAEEKKKAEEaKKAEEDKNMALRKAEEAKKAEEARIEEVMKLY 1601
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1681 GALREVTYDRSSEIEELRSIIENLRenqqrlqkeKAEEMEQLHEVIERLQEELSLGAPAVPAAVDCELPAVPAPAVGPEA 1760
Cdd:PTZ00121 1602 EEEKKMKAEEAKKAEEAKIKAEELK---------KAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEE 1672
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1761 LAAAGAASRLFAEQEHRHGQALEALQQRLQAAEEAAAGQLAELERSAALREAEVQamaSQIQAFEAALRAKEARLAERDL 1840
Cdd:PTZ00121 1673 DKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEE---NKIKAEEAKKEAEEDKKKAEEA 1749
|
650 660 670 680
....*....|....*....|....*....|....*....|....*....
gi 1953366515 1841 EIDAMKRQKLAHSAELETILAAFSRF-RRTLERQPLAAEDEPPELQRLR 1888
Cdd:PTZ00121 1750 KKDEEEKKKIAHLKKEEEKKAEEIRKeKEAVIEEELDEEDEKRRMEVDK 1798
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1199-1603 |
2.33e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 60.34 E-value: 2.33e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1199 QSLGLAVEGLLELALDSTRQLEEARQIHSRFEKEFSCKNEETAQVVRKQQQLLERLEEENAARTRLMLELHQAQGIIEGF 1278
Cdd:COG1196 354 EEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAEL 433
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1279 KEEKASLQEALCRQETAEHGLAEELEGL--------RQQLQQAAQQQAELKEENSALWSQKEASAAEAEAREAGTPAPIA 1350
Cdd:COG1196 434 EEEEEEEEEALEEAAEEEAELEEEEEALlellaellEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAA 513
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1351 HEDSALRREVECLTQEQSEARKQSEKDRAALLSQMKVFEAELEEQLSRHEACAKQAEE-------LSALRQQMAALDKHL 1423
Cdd:COG1196 514 LLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAgratflpLDKIRARAALAAALA 593
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1424 RSQRQF-MDEQAVEREHEREEFQREIQRLEEQLRQAARPRPHGPRVSDEEQLDEEVELLQEKLREKSDGFNELVIKKELA 1502
Cdd:COG1196 594 RGAIGAaVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAA 673
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1503 DRQVM-IQEEEIRRLEETNASCRREAAQLREELERQRDAMKALQQDKEALQEKQMSNLLLVSTLQSKLDEGRCPVPPADS 1581
Cdd:COG1196 674 LLEAEaELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEAL 753
|
410 420
....*....|....*....|..
gi 1953366515 1582 CPEGPEVQLEAVQRALQQRESE 1603
Cdd:COG1196 754 EELPEPPDLEELERELERLERE 775
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1211-1553 |
2.75e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 60.08 E-value: 2.75e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1211 LALDSTRQLEEARQIHSR---FEKEFSCKNEETAQVVRKQQQLLERLEEENAARTRLMLELHQAQGIIEGFKEEKASLQE 1287
Cdd:TIGR02169 665 GILFSRSEPAELQRLRERlegLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEE 744
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1288 ALCRQETAEHGLAEELEGLRQQLQQAAQQQAELKEENSAL--------WSQKEASAAEAEAREAGTPAPIAHEDSALRRE 1359
Cdd:TIGR02169 745 DLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLearlshsrIPEIQAELSKLEEEVSRIEARLREIEQKLNRL 824
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1360 VECLTQEQSEaRKQSEKDRAALLSQMKVFEAELEEQLSRHEACAKQAEELSALRQQMAALDKHLRSQRQFMDEQAVEREH 1439
Cdd:TIGR02169 825 TLEKEYLEKE-IQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELER 903
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1440 EREEFQREIQRLEEQLRQAArprphgprVSDEEQLDEEVELLQEKLREKSDGFNELVIKKELADRQVMiqEEEIRRLEET 1519
Cdd:TIGR02169 904 KIEELEAQIEKKRKRLSELK--------AKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRV--EEEIRALEPV 973
|
330 340 350
....*....|....*....|....*....|....*...
gi 1953366515 1520 NAScrreAAQLREELERQRDAMKA----LQQDKEALQE 1553
Cdd:TIGR02169 974 NML----AIQEYEEVLKRLDELKEkrakLEEERKAILE 1007
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
165-700 |
4.21e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 59.77 E-value: 4.21e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 165 EKETALTELRAMLNGRHAQELALLRSRQQQELELAREQHAREQEEMRLRCSQETAKLKEKLQSEMERNARAVESLKRDWE 244
Cdd:PTZ00121 1209 EEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEE 1288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 245 SERGLCL---ENLRRELSAKHRSELENLQDQFKRELSEQKAELEkifQAKNQAECALRTLEAQHEEALRQLREDLQSERC 321
Cdd:PTZ00121 1289 KKKADEAkkaEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKAD---AAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEK 1365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 322 QYVQDL---ELRLRDQEVEKQLElESLRASYAELKAqsqEEIRRLWSQLESPRPDRQDASARTPHGEELEQ-RERECGVQ 397
Cdd:PTZ00121 1366 AEAAEKkkeEAKKKADAAKKKAE-EKKKADEAKKKA---EEDKKKADELKKAAAAKKKADEAKKKAEEKKKaDEAKKKAE 1441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 398 QQRRGRRAEQESELGQSPEGAAERGREDPVLLEQRLQDATEEPSLESGGIGPSSMREGErrEQRVGPSLQPELAENHRCH 477
Cdd:PTZ00121 1442 EAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKAD--EAKKAAEAKKKADEAKKAE 1519
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 478 LTAWTSSLEAQQQAGLVETQESEGEQREGLSEGPGQELTQVPVPCAQGTALKVDTEVV-----ARGLGLEAEHRLKLLLL 552
Cdd:PTZ00121 1520 EAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNmalrkAEEAKKAEEARIEEVMK 1599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 553 QTELKEEMDVLKL----ENRNLHEKLQHEVCLKEDLERVKHSLVEDHR--EELKKANERLQLVKQELKDKEAEWKVASED 626
Cdd:PTZ00121 1600 LYEEEKKMKAEEAkkaeEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKkaEELKKAEEENKIKAAEEAKKAEEDKKKAEE 1679
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1953366515 627 LKRKAEEELTLMLHDLKEQAEAEKQSVINKFELREI-KMRQLQDQQAAQILDLEGSLVEQQGRLRQLEHGLEAEE 700
Cdd:PTZ00121 1680 AKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKkKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEE 1754
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1364-1733 |
4.39e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 59.31 E-value: 4.39e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1364 TQEQSEARKQSEKDRAALLSQMKVFEAELEEQLSRHEACAKQAEELSALRQQMAALDKHLRSQRQFM---DEQAVEREHE 1440
Cdd:PRK03918 188 TENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKrklEEKIRELEER 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1441 REEFQREIQRLEEQLRqaarprphgpRVSDEEQLDEEVELLQEKLREKSDGFNElvIKKELADRQVMIQ--EEEIRRLEE 1518
Cdd:PRK03918 268 IEELKKEIEELEEKVK----------ELKELKEKAEEYIKLSEFYEEYLDELRE--IEKRLSRLEEEINgiEERIKELEE 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1519 TNascrREAAQLREELERQRDAMKALQQDKEALQEkqmsnlllVSTLQSKLDEGRCPVppADSCPEGPEVQLEAVQRALQ 1598
Cdd:PRK03918 336 KE----ERLEELKKKLKELEKRLEELEERHELYEE--------AKAKKEELERLKKRL--TGLTPEKLEKELEELEKAKE 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1599 QRESEVLDLKEQLGKMKDDLVSKSDEVlhlnLELDAQSSRAAVSVRELQEEN-----ASLKAFLQNKEKEIMCVSEQLEA 1673
Cdd:PRK03918 402 EIEEEISKITARIGELKKEIKELKKAI----EELKKAKGKCPVCGRELTEEHrkellEEYTAELKRIEKELKEIEEKERK 477
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1953366515 1674 QLAgmgsgALREV--TYDRSSEIEELRSIIENLRENQQRLQKEKAEEMEQLHEVIERLQEEL 1733
Cdd:PRK03918 478 LRK-----ELRELekVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKL 534
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2474-2799 |
4.42e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 59.30 E-value: 4.42e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2474 VVQEQEKSLEHLRAsDRSSLLSEIQALRAQLRMTHLQNQEKLQQLcAALTSAEARGSRQEHQLRRQVELLAYKVEQEKRI 2553
Cdd:TIGR02168 671 SILERRREIEELEE-KIEELEEKIAELEKALAELRKELEELEEEL-EQLRKELEELSRQISALRKDLARLEAEVEQLEER 748
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2554 ASDVQKTLTEEQEKASSVRKLLvveqtvvRDLRSELRECKQDNERLLASLGEAQKEVLQLRSvldskesnlraALQELES 2633
Cdd:TIGR02168 749 IAQLSKELTELEAEIEELEERL-------EEAEEELAEAEAEIEELEAQIEQLKEELKALRE-----------ALDELRA 810
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2634 ERGKERALQSRLEEAQLQHLQREGQSSKTLEELRASLEKQFAQSSQLCVALKHEQTAKDNLQKELQI---EASRCEALLA 2710
Cdd:TIGR02168 811 ELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEAllnERASLEEALA 890
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2711 QERGQLSELQRSLEAEKGRSLELAAALRHERLLTEQLSRGPREspahhaLLRKLKEEKSRAAELQARLEQVQRQQEADVQ 2790
Cdd:TIGR02168 891 LLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEG------LEVRIDNLQERLSEEYSLTLEEAEALENKIE 964
|
....*....
gi 1953366515 2791 KRRAELERE 2799
Cdd:TIGR02168 965 DDEEEARRR 973
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1363-1722 |
1.20e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 57.86 E-value: 1.20e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1363 LTQEQSEARKQSEKDRAALLSQMKVFEAELEEQLSRHEACAKQAEELSALRQQMAALD---KHLRSQRQFMD--EQAVER 1437
Cdd:COG4717 51 LEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEaelEELREELEKLEklLQLLPL 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1438 EHEREEFQREIQRLEEQLRQAARprphgpRVSDEEQLDEEVELLQEKLREKSDGFNELVIKKELADRQVMIQ-EEEIRRL 1516
Cdd:COG4717 131 YQELEALEAELAELPERLEELEE------RLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDlAEELEEL 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1517 EETNASCRREAAQLREELERQRDAMKALQQDKEALQEKQ-----------MSNLLLVSTLQSKLDEGRCPVPPA------ 1579
Cdd:COG4717 205 QQRLAELEEELEEAQEELEELEEELEQLENELEAAALEErlkearlllliAAALLALLGLGGSLLSLILTIAGVlflvlg 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1580 --------------DSCPEGPEVQLEAVQRALQQRE----------------SEVLDLKEQLGKMKDDLVSKSD-----E 1624
Cdd:COG4717 285 llallflllarekaSLGKEAEELQALPALEELEEEEleellaalglppdlspEELLELLDRIEELQELLREAEEleeelQ 364
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1625 VLHLNLELDAQSSRAAVSVRELQEENASLKAFLQNKEKEIMCVSEQLEAQLAGMGSGALREVTYDRSSEIEELRSIIENL 1704
Cdd:COG4717 365 LEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEEL 444
|
410 420
....*....|....*....|.
gi 1953366515 1705 RENQQRLQKEKAE---EMEQL 1722
Cdd:COG4717 445 EEELEELREELAEleaELEQL 465
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
580-1063 |
1.70e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 57.25 E-value: 1.70e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 580 LKEDLERVKHSLVEDhREELKKANERLQLVKQELKDKEAEWKVASEDLKRKAEEELTLmlhdlkEQAEAEKQSVINKFEL 659
Cdd:COG1196 314 LEERLEELEEELAEL-EEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEA------EAELAEAEEELEELAE 386
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 660 REIKMRQLQDQQAAQILDLEGSLVEQQGRLRQLEHGLEAEEcprcghcGQEPAGRVAPADQDWELATRRLREDCALQLMQ 739
Cdd:COG1196 387 ELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELE-------EALAELEEEEEEEEEALEEAAEEEAELEEEEE 459
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 740 AQSRFLKERKELTEKFTAEQDALLQEAQEKHAcdmrllqerhqqhVLSLTAQLEARRRAEVEELKASVESERWALAEARV 819
Cdd:COG1196 460 ALLELLAELLEEAALLEAALAELLEELAEAAA-------------RLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAV 526
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 820 AELQTEHAAAISALEARHSALLGSLESRHLSEVQAMREEHRQALEQlRVDLEKQLQEKEASHPTPLTQALEKHPLSHGQE 899
Cdd:COG1196 527 AVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAG-RATFLPLDKIRARAALAAALARGAIGAAVDLVA 605
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 900 LPPVEGGLRTQTSSGQLEGVKAPVPP----------------EVQGAQQEGAPVPAEVEAQRPALLAELRQETGKQQLHC 963
Cdd:COG1196 606 SDLREADARYYVLGDTLLGRTLVAARleaalrravtlagrlrEVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELA 685
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 964 QEEPEVLEcpsepFLEQQILQpkgefESEKKVALHEKEIHGLECAQAQSLYQKEKESLFLQLQEKNNQILQLKEQILSLS 1043
Cdd:COG1196 686 ERLAEEEL-----ELEEALLA-----EEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEE 755
|
490 500
....*....|....*....|
gi 1953366515 1044 HEVEERRRDLEQLQQRRERE 1063
Cdd:COG1196 756 LPEPPDLEELERELERLERE 775
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1238-1553 |
1.77e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.39 E-value: 1.77e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1238 EETAQVVRKQQQLLERLEEENAARTR---LMLELHQAQGII-----EGFKEEKASLQEALCRQETAEHGLAEELEGLRQQ 1309
Cdd:TIGR02169 187 ERLDLIIDEKRQQLERLRREREKAERyqaLLKEKREYEGYEllkekEALERQKEAIERQLASLEEELEKLTEEISELEKR 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1310 LQQAAQQQAELKEENSALWSQKEASAAEAEAREAGtpapiahEDSALRREVECLTQEQSEA---RKQSEKDRAALLSQMK 1386
Cdd:TIGR02169 267 LEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEA-------EIASLERSIAEKERELEDAeerLAKLEAEIDKLLAEIE 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1387 VFEAELEEQLSRHEAC----AKQAEELSALRQQMAALDKHLRSQRQFMDEQAVERE---HEREEFQREIQRLEEQLRQA- 1458
Cdd:TIGR02169 340 ELEREIEEERKRRDKLteeyAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEklkREINELKRELDRLQEELQRLs 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1459 ---ARPRPHGPRVSDE-EQLDEEVELLQEKLREKSDGFNELVIKKELADRQVMIQEEEIRRLEETNASCRREAAqlreEL 1534
Cdd:TIGR02169 420 eelADLNAAIAGIEAKiNELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELA----EA 495
|
330
....*....|....*....
gi 1953366515 1535 ERQRDAMKALQQDKEALQE 1553
Cdd:TIGR02169 496 EAQARASEERVRGGRAVEE 514
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1403-1734 |
1.83e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.39 E-value: 1.83e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1403 AKQAEELSALRQQMAALDKHLRSQRQFMDEQAVEREH--EREEFQREIQRLEEQLRQAARPRPHGPRVSDEEQLD---EE 1477
Cdd:TIGR02169 173 EKALEELEEVEENIERLDLIIDEKRQQLERLRREREKaeRYQALLKEKREYEGYELLKEKEALERQKEAIERQLAsleEE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1478 VELLQEKLREKSDGFNELVIKKELADRQVM-IQEEEIRRLeetnascRREAAQLREELERQRDAMKALQQDKEALQEKQM 1556
Cdd:TIGR02169 253 LEKLTEEISELEKRLEEIEQLLEELNKKIKdLGEEEQLRV-------KEKIGELEAEIASLERSIAEKERELEDAEERLA 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1557 SNLLLVSTLQSKLdegrcpvppadscpEGPEVQLEAVQRALQQRESEVLDLKEQLgkmkDDLVSKSDEVLHLNLELDAQS 1636
Cdd:TIGR02169 326 KLEAEIDKLLAEI--------------EELEREIEEERKRRDKLTEEYAELKEEL----EDLRAELEEVDKEFAETRDEL 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1637 SRAAVSVRELQEENASLKAFLQNKEKEIMCVSEQ---LEAQLAGMgSGALREVTYDRSSEIEELRSIIENLRENQQRLQK 1713
Cdd:TIGR02169 388 KDYREKLEKLKREINELKRELDRLQEELQRLSEEladLNAAIAGI-EAKINELEEEKEDKALEIKKQEWKLEQLAADLSK 466
|
330 340
....*....|....*....|.
gi 1953366515 1714 EKaEEMEQLHEVIERLQEELS 1734
Cdd:TIGR02169 467 YE-QELYDLKEEYDRVEKELS 486
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
2535-2918 |
1.87e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 57.46 E-value: 1.87e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2535 QLRRQVELLAYkvEQEKRIASDVQKTLTEEQEKASSVRKLLVVEQTVVRdlRSELRECKQDNERLLASLGEAQKEVLQLR 2614
Cdd:PTZ00121 1083 AKEDNRADEAT--EEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARK--AEEARKAEDARKAEEARKAEDAKRVEIAR 1158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2615 SVLDSKESNLRAALQELESERGKERALQSR-LEEAQLQHLQREGQSSKTLEELRASLEKQFAQSSQLCVALKHEQTAKDN 2693
Cdd:PTZ00121 1159 KAEDARKAEEARKAEDAKKAEAARKAEEVRkAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKD 1238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2694 LQKELQIEASRC-EALLAQERGQLSELQRSLEAEKGRSLELAAALR--HERLLTEQLSRGPRESPAHHAllRKLKEEKSR 2770
Cdd:PTZ00121 1239 AEEAKKAEEERNnEEIRKFEEARMAHFARRQAAIKAEEARKADELKkaEEKKKADEAKKAEEKKKADEA--KKKAEEAKK 1316
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2771 AAELQARLEQVQRQqeADVQKRRAElEREKEVRAAQAREPGRCLRREGHASQQQAG-LEPLQAGLAAQEGRKDA---RRA 2846
Cdd:PTZ00121 1317 ADEAKKKAEEAKKK--ADAAKKKAE-EAKKAAEAAKAEAEAAADEAEAAEEKAEAAeKKKEEAKKKADAAKKKAeekKKA 1393
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1953366515 2847 DVGPGRADAEMRPTgakEKLRELELQRQRDEHKIRQLQRTVQALEAK---EEAAQRPEAERLQEERLGLERVRQQ 2918
Cdd:PTZ00121 1394 DEAKKKAEEDKKKA---DELKKAAAAKKKADEAKKKAEEKKKADEAKkkaEEAKKADEAKKKAEEAKKAEEAKKK 1465
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
251-872 |
2.17e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 57.25 E-value: 2.17e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 251 LENLRRELSAKHRSELENLQDQFKRELSEQKAELEKIFQAKNQAECALRTLEAQHEEALRQLREDLQSERcqyvqdlELR 330
Cdd:COG1196 222 LKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEY-------ELL 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 331 LRDQEVEKQLELESLRASYAELKAQSQEEIRRLWSQlesprpDRQDASARTPhgEELEQRERECGVQQQRRGRRAEQESE 410
Cdd:COG1196 295 AELARLEQDIARLEERRRELEERLEELEEELAELEE------ELEELEEELE--ELEEELEEAEEELEEAEAELAEAEEA 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 411 LGQSPEGAAERGREDPVLLEQRLQDATEEPSLEsggigpSSMREGERREQRvgpslqpelAENHRCHLTAWTSSLEAQQQ 490
Cdd:COG1196 367 LLEAEAELAEAEEELEELAEELLEALRAAAELA------AQLEELEEAEEA---------LLERLERLEEELEELEEALA 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 491 AGLVETQESEGEQREglsegpgqeltqvpvpcAQGTALKVDTEVVARGLGLEAEHRLKLLLLQTELKEEMDVLKLENRNL 570
Cdd:COG1196 432 ELEEEEEEEEEALEE-----------------AAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLL 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 571 heklqhevcLKEDLERVKHSLVEDHREELKKANERL--QLVKQELKDKEAEWKVASEDLKRKAEEELTLMLHDLKEQAEA 648
Cdd:COG1196 495 ---------LLLEAEADYEGFLEGVKAALLLAGLRGlaGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEY 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 649 EKQSVINKFE-LREIKMRQLQDQQAAQILDLEGSLVEQQGRLRQLEHGLEAEEcprcghcGQEPAGRVAPADQDWELATR 727
Cdd:COG1196 566 LKAAKAGRATfLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVL-------GDTLLGRTLVAARLEAALRR 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 728 RLREDCALQLMQAQSRFLKERKELTEKFTAEQDALLQEAQEKhacdMRLLQERHQQHVLSLTAQLEARRRAEVEELKASV 807
Cdd:COG1196 639 AVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAE----LEELAERLAEEELELEEALLAEEEEERELAEAEE 714
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1953366515 808 ESERWALAEARVAELQTEHAAAISALEARHSALLGSLESRHLSEVQAmREEHRQALEQLRVDLEK 872
Cdd:COG1196 715 ERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPD-LEELERELERLEREIEA 778
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1236-1731 |
4.34e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 56.20 E-value: 4.34e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1236 KNEETAQVVRKQQQLLERLEEENA-ARTRLMLELHQAQGI---IEGFKEEKASLQEALCRQETAEHGLAEELEGLRQQLQ 1311
Cdd:PRK02224 273 EREELAEEVRDLRERLEELEEERDdLLAEAGLDDADAEAVearREELEDRDEELRDRLEECRVAAQAHNEEAESLREDAD 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1312 QAAQQQAELKEENSALWSqkeasaaeaeareagtpapiahEDSALRREVECLTQEQSEARKQSEKDRAALLSQmkvfEAE 1391
Cdd:PRK02224 353 DLEERAEELREEAAELES----------------------ELEEAREAVEDRREEIEELEEEIEELRERFGDA----PVD 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1392 LEEQLSRHEACakqAEELSALRQQMAALDKHLRSQRQFMDE--------------QAVERE---HEREEFQREIQRLEEQ 1454
Cdd:PRK02224 407 LGNAEDFLEEL---REERDELREREAELEATLRTARERVEEaealleagkcpecgQPVEGSphvETIEEDRERVEELEAE 483
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1455 LRQAArprphgprvSDEEQLDEEVELLqEKLREKSDGFNELVIKKELADRQVMIQEEEIRRLEETNASCRREAAQLREEL 1534
Cdd:PRK02224 484 LEDLE---------EEVEEVEERLERA-EDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEA 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1535 ERQRDAMKALQQDKEALQEKqmsnlllVSTLQSKLDEGRCPVPPADSCPEGPEvQLEAVQRALQQRESEVLDLKEQLGKM 1614
Cdd:PRK02224 554 EEKREAAAEAEEEAEEAREE-------VAELNSKLAELKERIESLERIRTLLA-AIADAEDEIERLREKREALAELNDER 625
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1615 KDDLVSKSDEVLHLNLELDAQssraavSVRELQEENASLKAFLQNKEKEIMCVSEQLEAQLAGMGSgalrevtydRSSEI 1694
Cdd:PRK02224 626 RERLAEKRERKRELEAEFDEA------RIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGA---------VENEL 690
|
490 500 510
....*....|....*....|....*....|....*..
gi 1953366515 1695 EELrsiiENLRENQQRLQkEKAEEMEQLHEVIERLQE 1731
Cdd:PRK02224 691 EEL----EELRERREALE-NRVEALEALYDEAEELES 722
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
245-1080 |
5.77e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.92 E-value: 5.77e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 245 SERGLCLENLRRELSAKHRS-ELENLQDQFKRELSEQKAELEKIFQAKNQAECALRTLEAQHEEALRQLREDLQSERCQY 323
Cdd:PTZ00121 1068 QDEGLKPSYKDFDFDAKEDNrADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARK 1147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 324 VQDLELRLRDQEVEKQLELESLR----ASYAElKAQSQEEIRRlwsqlesprpdrqdasartphGEELEQRERecgVQQQ 399
Cdd:PTZ00121 1148 AEDAKRVEIARKAEDARKAEEARkaedAKKAE-AARKAEEVRK---------------------AEELRKAED---ARKA 1202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 400 RRGRRAEQESELGQSPEGAAERGREDPVLLEQRLQDATEEPSLESGGIGPSSMREGERREQRVGPSLQPELAENHRchlt 479
Cdd:PTZ00121 1203 EAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEAR---- 1278
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 480 AWTSSLEAQQQAGLVETQESEGEQREGLSEGPGQELTQVPVPCAQGTALKVDTEVVARglGLEAEHRLKLLLLQTELKEE 559
Cdd:PTZ00121 1279 KADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKK--KAEEAKKAAEAAKAEAEAAA 1356
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 560 MDVLKLENRNLHEKLQHEVCLKEDLERVKHSLVEDHREELKKANERLQLVKQELKDKEAEWKVAsEDLKRKAEEELTlmL 639
Cdd:PTZ00121 1357 DEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKA-DEAKKKAEEKKK--A 1433
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 640 HDLKEQAEAEKQSVINKFELREIKMRQLQDQQAAQILDLEGSLVEQQGRLRQLEHGLEAEECPRcghcGQEPAGRVAPAD 719
Cdd:PTZ00121 1434 DEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKK----KADEAKKAAEAK 1509
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 720 QDWELATRRLREDCALQLMQA-QSRFLKERKELTEKFTAEQ---DALLQEAQEKHACDMRLLQERHQQHVLSLTAQLEAR 795
Cdd:PTZ00121 1510 KKADEAKKAEEAKKADEAKKAeEAKKADEAKKAEEKKKADElkkAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKA 1589
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 796 RRAEVEELKASVESERWALAEarvaELQTEHAAAISALEARHSallgSLESRHLSEVQAMREEHRQALEQLRVDLEKQL- 874
Cdd:PTZ00121 1590 EEARIEEVMKLYEEEKKMKAE----EAKKAEEAKIKAEELKKA----EEEKKKVEQLKKKEAEEKKKAEELKKAEEENKi 1661
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 875 -QEKEASHPTPLTQALEKHPLSHGQELPPVEGGLRTQTSSGQLEGVKAPVPPEVQGAQQ-----EGAPVPAEvEAQRPA- 947
Cdd:PTZ00121 1662 kAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEElkkaeEENKIKAE-EAKKEAe 1740
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 948 ----LLAELRQETGK----QQLHCQEEPEVLECPSEpflEQQILQPKGEFESEKKVALHEKEIHGLECAQAQSLYQKEKE 1019
Cdd:PTZ00121 1741 edkkKAEEAKKDEEEkkkiAHLKKEEEKKAEEIRKE---KEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEG 1817
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1953366515 1020 SLFLQlQEKNNQILQLKEQILSlSHEVEERRRDLEQLQQRRERENQEGTNLISMLKSDADL 1080
Cdd:PTZ00121 1818 NLVIN-DSKEMEDSAIKEVADS-KNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDL 1876
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1213-1733 |
8.28e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.53 E-value: 8.28e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1213 LDSTRQLEEARQIHSRFEKEFSCKNEETAQVVRKQQQLLERLEEENA-----ARTRLMLELHQAQGIIEGFK-EEKASLQ 1286
Cdd:PTZ00121 1214 AEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEArmahfARRQAAIKAEEARKADELKKaEEKKKAD 1293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1287 EALCRQETAEHGLAEELEGLRQQLQQAAQQQAELKEENSALwSQKEASAAEAEAREAGTPAPIAHEDSALRREVECLTQE 1366
Cdd:PTZ00121 1294 EAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAA-KKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKK 1372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1367 QSEARKQSEKDRAALLSQMKVFEAELE--------EQLSRHEACAKQAEELSALRQQMAALDKHLRSQRQFMDEQAVERE 1438
Cdd:PTZ00121 1373 KEEAKKKADAAKKKAEEKKKADEAKKKaeedkkkaDELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKK 1452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1439 HEREEFQREIQRLEEQLRQAARPRPHGPRVSDEEQLDEEVELLQEKLREKSDGFNELVIKKELADRQVMIQEEEIRRLEE 1518
Cdd:PTZ00121 1453 AEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEE 1532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1519 T-------NASCRREAAQLR--EELERQRDAMKALQQDKEalqEKQMSNLLLVSTLQSKLDEGRCPvppadscPEGPEVQ 1589
Cdd:PTZ00121 1533 AkkadeakKAEEKKKADELKkaEELKKAEEKKKAEEAKKA---EEDKNMALRKAEEAKKAEEARIE-------EVMKLYE 1602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1590 LEAVQRALQQResevldlKEQLGKMKDDLVSKSDEVLHLNLEL---DAQSSRAAVSVRELQEENASLKAFLQNKEKEimc 1666
Cdd:PTZ00121 1603 EEKKMKAEEAK-------KAEEAKIKAEELKKAEEEKKKVEQLkkkEAEEKKKAEELKKAEEENKIKAAEEAKKAEE--- 1672
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1953366515 1667 vsEQLEAQLAGMGSGALREVTYDRSSEIEELRSiIENLRENQQRlQKEKAEEMEQLHEVIERLQEEL 1733
Cdd:PTZ00121 1673 --DKKKAEEAKKAEEDEKKAAEALKKEAEEAKK-AEELKKKEAE-EKKKAEELKKAEEENKIKAEEA 1735
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1267-1554 |
9.65e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.06 E-value: 9.65e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1267 ELHQAQGIIEGFKEEKASLQEALCRQETAEHGLAEELEGLRQQLQQAAQQQAELKEENSALWSQKEAsaaeaeareagtp 1346
Cdd:TIGR02168 678 EIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQ------------- 744
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1347 apIAHEDSALRREVECLTQEQSEARKQSEKDRAALLSQMKVFEaELEEQLSRH-EACAKQAEELSALRQQMAALDKHLRS 1425
Cdd:TIGR02168 745 --LEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIE-ELEAQIEQLkEELKALREALDELRAELTLLNEEAAN 821
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1426 QRQfmDEQAVEREHEREEfqREIQRLEEQLRQAArprphgprvSDEEQLDEEVELLQEKLREKSDGFNELVIKKELADRQ 1505
Cdd:TIGR02168 822 LRE--RLESLERRIAATE--RRLEDLEEQIEELS---------EDIESLAAEIEELEELIEELESELEALLNERASLEEA 888
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 1953366515 1506 VM-------IQEEEIRRLEETNASCRREAAQLREELERQRDAMKALQQDKEALQEK 1554
Cdd:TIGR02168 889 LAllrseleELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQER 944
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1351-1564 |
1.02e-06 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 54.74 E-value: 1.02e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1351 HEDSALRREVECLTQEQSEARKQSEKDRAALLSQMKVFEAELEE-QLSRHEACAKQAEELSALRQQMAALDKHLRSQRQF 1429
Cdd:pfam17380 339 QERMAMERERELERIRQEERKRELERIRQEEIAMEISRMRELERlQMERQQKNERVRQELEAARKVKILEEERQRKIQQQ 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1430 MDEQAVEREHEREEFQREIQRLEEQ-------LRQAARPRPHGP---RVSDEEQLDEEVELLQEKL-REKSDGFNELVIK 1498
Cdd:pfam17380 419 KVEMEQIRAEQEEARQREVRRLEEEraremerVRLEEQERQQQVerlRQQEEERKRKKLELEKEKRdRKRAEEQRRKILE 498
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1953366515 1499 KEL-ADRQVMIQEEEIRRLEETNASCRREAAQlreELERQRDAMKALQQDKEALQEKQMSNLLLVST 1564
Cdd:pfam17380 499 KELeERKQAMIEEERKRKLLEKEMEERQKAIY---EEERRREAEEERRKQQEMEERRRIQEQMRKAT 562
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1365-1732 |
2.67e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.53 E-value: 2.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1365 QEQSEARKQSEKDRAALLSQMKVFEAELEEQLSRHEACAKQAEELS----ALRQQMAALDKHLRSQRQFMDEQAVEREHE 1440
Cdd:TIGR02169 677 QRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEkeieQLEQEEEKLKERLEELEEDLSSLEQEIENV 756
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1441 REEFQREIQRLEEQLRQAARPRphgprvsdEEQLDEEVELLQEKLREKSDGFNELvikkeladrqvmiqEEEIRRLEETN 1520
Cdd:TIGR02169 757 KSELKELEARIEELEEDLHKLE--------EALNDLEARLSHSRIPEIQAELSKL--------------EEEVSRIEARL 814
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1521 ASCRREAAQLREELERQRDAMKALQQDKEALQEKQMSNLLLVSTLQSKLDEgrcpvppadscpegPEVQLEAVQRALQQR 1600
Cdd:TIGR02169 815 REIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEE--------------LEEELEELEAALRDL 880
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1601 ESEVLDLKEQLGKMKDDLVSKSDEVLHLNLELDAQSSRAA---VSVRELQEENASLKAFLQNKEKEIMCVS--EQLEAQL 1675
Cdd:TIGR02169 881 ESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSelkAKLEALEEELSEIEDPKGEDEEIPEEELslEDVQAEL 960
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 1953366515 1676 AGMGSG--ALREVTYDRSSEIEELRSIIENLRENQQRLQKEKaeemEQLHEVIERLQEE 1732
Cdd:TIGR02169 961 QRVEEEirALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEER----KAILERIEEYEKK 1015
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
2463-2917 |
2.82e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.38 E-value: 2.82e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2463 EHSSLLERLEKVVQEQEKsLEHLRASDRSSLL-SEIQALRAQLRmthlQNQEKLQQLCAALTSAEARGSRQEHQLR---- 2537
Cdd:COG4913 263 RYAAARERLAELEYLRAA-LRLWFAQRRLELLeAELEELRAELA----RLEAELERLEARLDALREELDELEAQIRgngg 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2538 RQVELLAYKVEQEKRIASDVQKTLTEEQEKASSVRKLLVVEQTVVRDLRSELREckqdnerLLASLGEAQKEVLQLRSVL 2617
Cdd:COG4913 338 DRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAA-------LLEALEEELEALEEALAEA 410
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2618 DSKESNLRAALQELESERGKERALQSRLEEAQLQHLQR-EGQSSKTLEEL----------------RASLEK---QFAQS 2677
Cdd:COG4913 411 EAALRDLRRELRELEAEIASLERRKSNIPARLLALRDAlAEALGLDEAELpfvgelievrpeeerwRGAIERvlgGFALT 490
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2678 sqLCVALKHEQTAK---DNLQKELQIEASRCEALLAQERGQ--------------LSELQRSLEAEKGRSLELA-----A 2735
Cdd:COG4913 491 --LLVPPEHYAAALrwvNRLHLRGRLVYERVRTGLPDPERPrldpdslagkldfkPHPFRAWLEAELGRRFDYVcvdspE 568
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2736 AL-RHERLLTEQ-LSRGPRESPAH--------------------HALLRKLKEEKSRAAELQARLEQVQRQQEAdVQKRR 2793
Cdd:COG4913 569 ELrRHPRAITRAgQVKGNGTRHEKddrrrirsryvlgfdnraklAALEAELAELEEELAEAEERLEALEAELDA-LQERR 647
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2794 AELEREKEVRAAQAREPGrcLRREGHASQQQ-AGLEPLQAGLAAQEGRKDARRADvgpgRADAEMRPTGAKEKLRELELQ 2872
Cdd:COG4913 648 EALQRLAEYSWDEIDVAS--AEREIAELEAElERLDASSDDLAALEEQLEELEAE----LEELEEELDELKGEIGRLEKE 721
|
490 500 510 520
....*....|....*....|....*....|....*....|....*
gi 1953366515 2873 RQRDEHKIRQLQRTVQALEAKEEAAQRPEAERLQEERLGLERVRQ 2917
Cdd:COG4913 722 LEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERE 766
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1367-1553 |
2.89e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.46 E-value: 2.89e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1367 QSEARKQSEKDRAALLSQMKVFEAELEEQLSRHEACAKQAEEL----SALRQQMAALDKHLRSQRQFMDEQAVEREHERE 1442
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALerriAALARRIRALEQELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1443 EFQREIQRLEEQLRQAARPRPHGP---RVSDE----------------EQLDEEVELLQEKLREKSDGFNELVIKKELAD 1503
Cdd:COG4942 98 ELEAQKEELAELLRALYRLGRQPPlalLLSPEdfldavrrlqylkylaPARREQAEELRADLAELAALRAELEAERAELE 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1504 RQVMIQEEEIRRLEETNASCRREAAQLREELERQRDAMKALQQDKEALQE 1553
Cdd:COG4942 178 ALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEA 227
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1346-2079 |
5.71e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.45 E-value: 5.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1346 PAPIAHEDSALRREVEclTQEQSEARKQSEKDRaallsqmKVFEAELEEQLSRHEAcAKQAEELSALRQQMAALD-KHLR 1424
Cdd:PTZ00121 1074 PSYKDFDFDAKEDNRA--DEATEEAFGKAEEAK-------KTETGKAEEARKAEEA-KKKAEDARKAEEARKAEDaRKAE 1143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1425 SQRQFMDEQAVEREHEREEFQR--EIQRLEEQLRQAARPRPHGPRVSDEEQLDEEVELLQEKLREKSDGFNELVIKKELA 1502
Cdd:PTZ00121 1144 EARKAEDAKRVEIARKAEDARKaeEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDA 1223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1503 DRQvmiqeEEIRRLEETNascRREAAQLREELERQRDAMKALQQDKEALQEKQMSNLllvstlqsKLDEGRcpvpPADSC 1582
Cdd:PTZ00121 1224 KKA-----EAVKKAEEAK---KDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAI--------KAEEAR----KADEL 1283
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1583 PEGPEV-QLEAVQRALQQRESEVLDLKEQLGKMKDDLVSKSDEVLHLNLELD--AQSSRAAVSVRELQEENASLKAFLQN 1659
Cdd:PTZ00121 1284 KKAEEKkKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKkkAEEAKKAAEAAKAEAEAAADEAEAAE 1363
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1660 KEKEimcvSEQLEAQLAGMGSGALREVTyDRSSEIEELRSIIENLRENQQRLQKEKAEE--MEQLHEVIERLQEELSLGA 1737
Cdd:PTZ00121 1364 EKAE----AAEKKKEEAKKKADAAKKKA-EEKKKADEAKKKAEEDKKKADELKKAAAAKkkADEAKKKAEEKKKADEAKK 1438
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1738 PAVPAAVDCELPAVPAPAVGPEALAAAGAASRLFAE-----QEHRHGQALEALQQRLQAAEEAAAGQLAELERSAALREA 1812
Cdd:PTZ00121 1439 KAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEakkkaEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKA 1518
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1813 EVQAMASQIQAFEAALRAKEARLAERDLEIDAMKRQKLAHSAELetilaafsrfRRTLERQPLAAEDEPPELQRLRVQcv 1892
Cdd:PTZ00121 1519 EEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEE----------KKKAEEAKKAEEDKNMALRKAEEA-- 1586
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1893 rlsrqlqvlnqrflrcqkeadkQQARGARLRPRGARGLQGPGPRAEEASRDEASQQDVDSRQVASATQGQVRDPQNAVND 1972
Cdd:PTZ00121 1587 ----------------------KKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAE 1644
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1973 DLQPAElpvtsgppGLLKQDSVMSVLAVCQRQLESELLLLKNEMHLRTEDRGKAPARMKNKENllEDRQLQKVGliSQVK 2052
Cdd:PTZ00121 1645 EKKKAE--------ELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAE--EAKKAEELK--KKEA 1712
|
730 740
....*....|....*....|....*..
gi 1953366515 2053 ELQEKLNHLVRSVNFQNIETEDFKSQQ 2079
Cdd:PTZ00121 1713 EEKKKAEELKKAEEENKIKAEEAKKEA 1739
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1142-1719 |
8.33e-06 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 51.65 E-value: 8.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1142 LEETWPGSEAALLELDRSLPECVEMPSEAEISSHIC----ESFFMSPESSLEYE---QPIRRIYQSLGLAVEGLLeLALD 1214
Cdd:pfam05483 122 IQELQFENEKVSLKLEEEIQENKDLIKENNATRHLCnllkETCARSAEKTKKYEyerEETRQVYMDLNNNIEKMI-LAFE 200
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1215 STR-QLEEAR-----QIHSRFEKEFSCKNEETAQVVRKQQQ----LLERLEEENAARTrLMLELHQAQGIIEGFKEEKAS 1284
Cdd:pfam05483 201 ELRvQAENARlemhfKLKEDHEKIQHLEEEYKKEINDKEKQvsllLIQITEKENKMKD-LTFLLEESRDKANQLEEKTKL 279
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1285 LQEALCRQETAEHGLAEELEGLRQQLQQAAQQQAELKEE-NSALWSQKEASAAEAEAREAGTPAPIAHedSALRREVECL 1363
Cdd:pfam05483 280 QDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDlQIATKTICQLTEEKEAQMEELNKAKAAH--SFVVTEFEAT 357
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1364 TQEQSEARKQSEKDRAALLSQMKVFEAELEEQLSRHEACAK----QAEELSALRQQMAALDKHLRSQRQFmDEQAVEREH 1439
Cdd:pfam05483 358 TCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKfknnKEVELEELKKILAEDEKLLDEKKQF-EKIAEELKG 436
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1440 EREEF-------QREIQRLEEQLRQAARPRPHGPRVSDEEQLDEEVELLQ----------------EKLREKSDGFNELv 1496
Cdd:pfam05483 437 KEQELifllqarEKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKnieltahcdklllenkELTQEASDMTLEL- 515
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1497 iKKELADRQVMIQEEE-----IRRLEETNASCRREAAQLREELERQRDAMKAlQQDKEALQEKQMSNLLLVSTLQSKLDE 1571
Cdd:pfam05483 516 -KKHQEDIINCKKQEErmlkqIENLEEKEMNLRDELESVREEFIQKGDEVKC-KLDKSEENARSIEYEVLKKEKQMKILE 593
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1572 GRCpvppadscpEGPEVQLEAVQRALQQRESEVLDLKEQLGKMKDDLVSKSDEVLHLNLELDAQSSRAAVSV----RELQ 1647
Cdd:pfam05483 594 NKC---------NNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIIdnyqKEIE 664
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1953366515 1648 EENASLKAFLQNKEKEIMCVSEQLEAQlagmgsgalREVTYDRSSEIEELRSIIENLRENQQRLQKEKAEEM 1719
Cdd:pfam05483 665 DKKISEEKLLEEVEKAKAIADEAVKLQ---------KEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSEL 727
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
2583-2904 |
9.93e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.61 E-value: 9.93e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2583 RDLRSELRECKQdnERLLASLGEAQKEVLQLRSVLDSKESNLrAALQELESERGKE-RALQSRLEEAQLQHLQREGQSSK 2661
Cdd:TIGR02169 214 QALLKEKREYEG--YELLKEKEALERQKEAIERQLASLEEEL-EKLTEEISELEKRlEEIEQLLEELNKKIKDLGEEEQL 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2662 TLEELRASLEKQFAQssqlcvaLKHEQTAKDNLQKELQIEASRCEALLAQERGQLSELQRSLEAEKGRSLELAAALRHER 2741
Cdd:TIGR02169 291 RVKEKIGELEAEIAS-------LERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELK 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2742 LLTEQL-SRGPRESPAHHALLRKLKEEKSRAAELQARLEQVQRQQEADVQKRRAELEREKEVRAAQARepgrclrREGHA 2820
Cdd:TIGR02169 364 EELEDLrAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAG-------IEAKI 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2821 SQQQAGLEPLQAGLAAQEGRKDARRADVGPgradaemrptgAKEKLRELELQRQRDEHKIRQLQRTVQALEAKEEAAQRP 2900
Cdd:TIGR02169 437 NELEEEKEDKALEIKKQEWKLEQLAADLSK-----------YEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEER 505
|
....
gi 1953366515 2901 EAER 2904
Cdd:TIGR02169 506 VRGG 509
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
2469-2911 |
1.27e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 51.50 E-value: 1.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2469 ERLEKVVQEQEKSlehlrASDRSSLLSEIQALRA--QLRMTHLQNQEKLQQLCAALTSAEARgsrqehqLRRQVELLAyk 2546
Cdd:PRK04863 307 YRLVEMARELAEL-----NEAESDLEQDYQAASDhlNLVQTALRQQEKIERYQADLEELEER-------LEEQNEVVE-- 372
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2547 VEQEKRIASDVQKTLTEEQekassvrkllvveqtvVRDLRSELRECKQdnerllaSLGEAQKEVLQLR---SVLDSKESN 2623
Cdd:PRK04863 373 EADEQQEENEARAEAAEEE----------------VDELKSQLADYQQ-------ALDVQQTRAIQYQqavQALERAKQL 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2624 LRAALQELESERGKERALQSRLEEAQLQHLQREGQSSKTLEELRaslekQFAQSSQLCVALKHE-------QTAKDNLQK 2696
Cdd:PRK04863 430 CGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHS-----QFEQAYQLVRKIAGEvsrseawDVARELLRR 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2697 --ELQIEASRCEALlaqeRGQLSELQRSLEAEKgrslelaaalRHERLLTE---QLSRGP-------RESPAHHALLRKL 2764
Cdd:PRK04863 505 lrEQRHLAEQLQQL----RMRLSELEQRLRQQQ----------RAERLLAEfckRLGKNLddedeleQLQEELEARLESL 570
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2765 KEEKSRAAELQARLEQVQRQQEADVQKRRAeleREKEVRAAQARepgrclrreghasqqqagLEPLQAglaaQEGRKDAR 2844
Cdd:PRK04863 571 SESVSEARERRMALRQQLEQLQARIQRLAA---RAPAWLAAQDA------------------LARLRE----QSGEEFED 625
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1953366515 2845 RADVgpgraDAEMRPTgaKEKLRELELQRQRDEHKIRQLQRTVQALEAKEEAaqrpEAERLQE--ERLG 2911
Cdd:PRK04863 626 SQDV-----TEYMQQL--LERERELTVERDELAARKQALDEEIERLSQPGGS----EDPRLNAlaERFG 683
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
950-1607 |
2.16e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.44 E-value: 2.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 950 AELRQETGKQQLHCQEEPEVLecpsepfLEQQILQPKGEFESEKKvALHEKEihglecAQAQSLYQKEKEsLFLQLQEKN 1029
Cdd:TIGR02168 321 LEAQLEELESKLDELAEELAE-------LEEKLEELKEELESLEA-ELEELE------AELEELESRLEE-LEEQLETLR 385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1030 NQILQLKEQILSLSHEVEERRRDLEQLQQRRERENQEGTNLismLKSDADLSDRERRALRDALRRLLSLFGEMLKVAIAL 1109
Cdd:TIGR02168 386 SKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEEL---LKKLEEAELKELQAELEELEEELEELQEELERLEEA 462
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1110 KSRISERVGLCLEDEDPPG-------------------------------AWPSGQALSAAPVLE--ETWPGSEAALLEL 1156
Cdd:TIGR02168 463 LEELREELEEAEQALDAAErelaqlqarldslerlqenlegfsegvkallKNQSGLSGILGVLSEliSVDEGYEAAIEAA 542
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1157 DRSLPECVEMPSEAEISSHICesfFMSPESS-----LEYEQPIRRIYQSLGLAVEGLLELALDSTRQLEEARqihSRFEK 1231
Cdd:TIGR02168 543 LGGRLQAVVVENLNAAKKAIA---FLKQNELgrvtfLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFD---PKLRK 616
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1232 EFS--------CKNEETAQVVRKQQQLLERL------------------EEENAARTRLMLELHQAQGIIEGFKEEKASL 1285
Cdd:TIGR02168 617 ALSyllggvlvVDDLDNALELAKKLRPGYRIvtldgdlvrpggvitggsAKTNSSILERRREIEELEEKIEELEEKIAEL 696
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1286 QEALCRQETAEHGLAEELEGLRQQLQQAAQQQAELKEENSALWSQKEAsaaeaeareagtpapIAHEDSALRREVECLTQ 1365
Cdd:TIGR02168 697 EKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQ---------------LEERIAQLSKELTELEA 761
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1366 EQSEARKQSEKDRAALLSQMKVFEaELEEQLSRH-EACAKQAEELSALRQQMAALDKHLRSQRQfmDEQAVEREHEREEf 1444
Cdd:TIGR02168 762 EIEELEERLEEAEEELAEAEAEIE-ELEAQIEQLkEELKALREALDELRAELTLLNEEAANLRE--RLESLERRIAATE- 837
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1445 qREIQRLEEQLRQAArprphgprvSDEEQLDEEVELLQEKLREKSDGFNELVIKKELADRQVMIQEEEIRRLEETNASCR 1524
Cdd:TIGR02168 838 -RRLEDLEEQIEELS---------EDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELE 907
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1525 REAAQLREELERQRDAMKALQQDKEALQekqmsnlLLVSTLQSKL-DEGRCPVPPADSCPEGPEVQLEAVQRALQQRESE 1603
Cdd:TIGR02168 908 SKRSELRRELEELREKLAQLELRLEGLE-------VRIDNLQERLsEEYSLTLEEAEALENKIEDDEEEARRRLKRLENK 980
|
....
gi 1953366515 1604 VLDL 1607
Cdd:TIGR02168 981 IKEL 984
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
2468-2679 |
2.19e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.76 E-value: 2.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2468 LERLEKVVQEQEKSLEHLRAsDRSSLLSEIQALRAQLRMTHLQ---NQEKLQQLCAALTSAEARGSRQEHQLRRQVELLA 2544
Cdd:COG4942 29 LEQLQQEIAELEKELAALKK-EEKALLKQLAALERRIAALARRiraLEQELAALEAELAELEKEIAELRAELEAQKEELA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2545 YKVEQEKRIASDVQKTLTEEQEKASSVRKLLVVEQTVVRDLRSELRECKQDNERLLASLGEAQKEVLQLRSVLDskesNL 2624
Cdd:COG4942 108 ELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLA----EL 183
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1953366515 2625 RAALQELESERGKERALQSRLE---EAQLQHLQREGQSSKTLEELRASLEKQFAQSSQ 2679
Cdd:COG4942 184 EEERAALEALKAERQKLLARLEkelAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
137-875 |
3.91e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 49.84 E-value: 3.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 137 SLELEALRLSLSNMHTAQLELTQANLQKEKETALTELRAMLNGRHAQeLALLRSRQQQELELAREQHAREQEEMRLRCSQ 216
Cdd:pfam12128 252 TLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQ-WKEKRDELNGELSAADAAVAKDRSELEALEDQ 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 217 ETAKLKEKLQSEMERNARAvESLKRDWE--SERGLCLENLRRELSAKHRSELENLQDQFKRELSEQKAELEKIFQAKNQA 294
Cdd:pfam12128 331 HGAFLDADIETAAADQEQL-PSWQSELEnlEERLKALTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKLAKIREARDRQ 409
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 295 ECALRTLEAQHEEALRQLREDLQSErcqyVQDLELRLRDQEVEKQLELESLRASYAEL--KAQSQEEIRRLWSQLESPRP 372
Cdd:pfam12128 410 LAVAEDDLQALESELREQLEAGKLE----FNEEEYRLKSRLGELKLRLNQATATPELLlqLENFDERIERAREEQEAANA 485
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 373 DRQDAsartphgeeleQRERecgvqQQRRGRRAEQESELGQSPEGAAERgredpvllEQRLQDATEEPSLESGGIGPSSM 452
Cdd:pfam12128 486 EVERL-----------QSEL-----RQARKRRDQASEALRQASRRLEER--------QSALDELELQLFPQAGTLLHFLR 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 453 REGERREQRVGPSLQPELAenHRCHLTAwtssleaqqqaglVETQESEGEQREGLSEGPGQELTQVPVPCAQGTALKVDT 532
Cdd:pfam12128 542 KEAPDWEQSIGKVISPELL--HRTDLDP-------------EVWDGSVGGELNLYGVKLDLKRIDVPEWAASEEELRERL 606
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 533 EVVARGLGLEAEHRLKLLLLQTELKEEMDVLKLEnrnlheklqhevclkedLERVKHSLvEDHREELKKANERLQLVKQE 612
Cdd:pfam12128 607 DKAEEALQSAREKQAAAEEQLVQANGELEKASRE-----------------ETFARTAL-KNARLDLRRLFDEKQSEKDK 668
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 613 LKDKEAEWKVASEDLKRKAEEELTLMLHDLKEQAEAEKQsvinkfELREIKMRQLQDQQAaqildLEGSLVEQQGRLRQL 692
Cdd:pfam12128 669 KNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKE------QKREARTEKQAYWQV-----VEGALDAQLALLKAA 737
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 693 EHGLEAEECPRCGHCGQEPAGRVAPADQDWELATRRLREdcALQLMQAQSRFLKERKELTEKFTAEQDALLQEAQEKHAc 772
Cdd:pfam12128 738 IAARRSGAKAELKALETWYKRDLASLGVDPDVIAKLKRE--IRTLERKIERIAVRRQEVLRYFDWYQETWLQRRPRLAT- 814
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 773 dmrlLQERHQQHVLSLTAQLeARRRAEVEELKASVESERWAL--AEARVAELQTEHAAAISALEARHSALLGSLESRHLS 850
Cdd:pfam12128 815 ----QLSNIERAISELQQQL-ARLIADTKLRRAKLEMERKASekQQVRLSENLRGLRCEMSKLATLKEDANSEQAQGSIG 889
|
730 740
....*....|....*....|....*
gi 1953366515 851 EVQAMREEHRQALEQLRVDLEKQLQ 875
Cdd:pfam12128 890 ERLAQLEDLKLKRDYLSESVKKYVE 914
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
2513-2796 |
5.09e-05 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 49.28 E-value: 5.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2513 EKLQQLCAALTS-AEARGSRQEHQLRRQVellaykVEQEKRIASDVQKTLTEEQEKASSVRKLLVV---EQTVVrdlrse 2588
Cdd:PRK10929 45 EIVEALQSALNWlEERKGSLERAKQYQQV------IDNFPKLSAELRQQLNNERDEPRSVPPNMSTdalEQEIL------ 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2589 lreckQDNERLLASLGEAQKEVLQLRSVLDS------KESNLRAALQELESERGKERALQSRLEEAQLQHLQREGQSSK- 2661
Cdd:PRK10929 113 -----QVSSQLLEKSRQAQQEQDRAREISDSlsqlpqQQTEARRQLNEIERRLQTLGTPNTPLAQAQLTALQAESAALKa 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2662 TLEELraslekQFAQSSqlcvALKHEQTAKdnLQKEL-QIEASRCEALLAQERGQLSElQRSLEAEKgrslelaaALRHE 2740
Cdd:PRK10929 188 LVDEL------ELAQLS----ANNRQELAR--LRSELaKKRSQQLDAYLQALRNQLNS-QRQREAER--------ALEST 246
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1953366515 2741 RLLTEQLSRGPRespahhALLRKLK--EEKSRAAELQA-RLEQV---QRQQEADVQKRRAEL 2796
Cdd:PRK10929 247 ELLAEQSGDLPK------SIVAQFKinRELSQALNQQAqRMDLIasqQRQAASQTLQVRQAL 302
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1238-1560 |
5.25e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.00 E-value: 5.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1238 EETAQVVRKQQQLLERLEEENAARTRLMLEL-HQAQGIIEGFKEEKASLQEALCRQETAEHGLAEELEGLRQQLQQAAQQ 1316
Cdd:COG4717 156 EELRELEEELEELEAELAELQEELEELLEQLsLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENE 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1317 QAELKEEN------------------SALWSQKEASAAEAEAREAGTPAPIAHEDSALRREVECLTQEQSEARKQSEKDR 1378
Cdd:COG4717 236 LEAAALEErlkearlllliaaallalLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEE 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1379 ---AALLSQMKVFEAELEEQLSRHEACAKQAEELSALRQQMAALDKHLRSQRQFMD----------------EQAVEREH 1439
Cdd:COG4717 316 leeEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEiaallaeagvedeeelRAALEQAE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1440 EREEFQREIQRLEEQLRQAARPRPHGPRVSDEEQLDEEVELLQEKLREKSDGFNELviKKELADRQVMIQE-EEIRRLEE 1518
Cdd:COG4717 396 EYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEEL--REELAELEAELEQlEEDGELAE 473
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 1953366515 1519 TNASCRREAAQLREELER---QRDAMKALQQDKEALQEKQMSNLL 1560
Cdd:COG4717 474 LLQELEELKAELRELAEEwaaLKLALELLEEAREEYREERLPPVL 518
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
2471-2910 |
5.34e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.00 E-value: 5.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2471 LEKVVQEQEKSLEHLRASDRSSLLSEIQALRAQLRM------THLQNQEKLQQLCAALTSAEARGSRQEHQLRR-QVELL 2543
Cdd:COG4717 47 LLERLEKEADELFKPQGRKPELNLKELKELEEELKEaeekeeEYAELQEELEELEEELEELEAELEELREELEKlEKLLQ 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2544 AYKVEQEKRIASDVQKTLTEEQEKASSVRKLLVVEQTVVRDLRSELRECKQDNERLLASLGEAQKEvlQLRSVLDSKESn 2623
Cdd:COG4717 127 LLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEE--ELQDLAEELEE- 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2624 LRAALQELESERGKERALQSRLEEaQLQHLQREGQSSKTLEELRASLEKQFAQSSQLCVALKHEQTAKDNLQKE---LQI 2700
Cdd:COG4717 204 LQQRLAELEEELEEAQEELEELEE-ELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAgvlFLV 282
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2701 EASRCEALLAQERGQLSELQRSLEAEKGRSLELAAALRHERLLTEQ---LSRGPRESPAHHALLRKLKEEKSRAAELQAR 2777
Cdd:COG4717 283 LGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALglpPDLSPEELLELLDRIEELQELLREAEELEEE 362
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2778 LEQVQRQQEADVQKRRAELEREKEVRAAqarepgrcLRREGHASQQQAGLEPLQAGLAAQEGRKDARRADVGPGRADAEM 2857
Cdd:COG4717 363 LQLEELEQEIAALLAEAGVEDEEELRAA--------LEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEEL 434
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 1953366515 2858 RptGAKEKLRELELQRQRDEHKIRQLQRTVQALEAKEEAAQRPEAERLQEERL 2910
Cdd:COG4717 435 E--ELEEELEELEEELEELREELAELEAELEQLEEDGELAELLQELEELKAEL 485
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
88-382 |
5.51e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 48.97 E-value: 5.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 88 QDREQDCKLEIAQPMGRQEDEAGAQQQVAVELRQPAGMQQVQLQTQPVPSLELEALRLSLSNMHTAQLELTQANLQKEKE 167
Cdd:pfam17380 298 QERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRQEERKRELERIRQEEIAMEISRM 377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 168 TALTELRamlngrhaQELALLRSRQQQELELAREQHAREQEEMR-----------LRCSQETAKLKEKLQSEMERnARAV 236
Cdd:pfam17380 378 RELERLQ--------MERQQKNERVRQELEAARKVKILEEERQRkiqqqkvemeqIRAEQEEARQREVRRLEEER-AREM 448
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 237 ESLKRDwESERGLCLENLRRELSAKHRSELENLQDQFKRELSEQ------KAELEKIFQAKNQAECALRTLEAQHEEALR 310
Cdd:pfam17380 449 ERVRLE-EQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEqrrkilEKELEERKQAMIEEERKRKLLEKEMEERQK 527
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1953366515 311 QLREDLQSERCQyvqdlELRLRDQEVE--KQLELESLRASYAELKAQSQEEIRRLWSQLESPRPDRQDASARTP 382
Cdd:pfam17380 528 AIYEEERRREAE-----EERRKQQEMEerRRIQEQMRKATEERSRLEAMEREREMMRQIVESEKARAEYEATTP 596
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1356-1733 |
5.89e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 48.88 E-value: 5.89e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1356 LRREVECLTQEQSEARKQSEKDRAALLSQMKVFEAELEEQLSRHEACAKQAEE--------LSALRQQMAALDKhLRSQR 1427
Cdd:PRK02224 182 LSDQRGSLDQLKAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQREQAREtrdeadevLEEHEERREELET-LEAEI 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1428 QFMDEQAVEREHEREEFQREIQRLEEQLRQAARPRPHGPRVSDEEQLDEE-VELLQEKLREKSDGfnelvIKKELADRQV 1506
Cdd:PRK02224 261 EDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEaVEARREELEDRDEE-----LRDRLEECRV 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1507 MIQE---------EEIRRLEETNASCRREAAQLREELERQRDAMKALQQDKEALQEKqmsnlllvstlqskLDEGRCPVp 1577
Cdd:PRK02224 336 AAQAhneeaeslrEDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEE--------------IEELRERF- 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1578 padscpEGPEVQLEAVQRALQQRESEVLDLKEQLGKMKDDLVSKSDEVLHLNLELDA----------QSSRAAVSVRELQ 1647
Cdd:PRK02224 401 ------GDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAgkcpecgqpvEGSPHVETIEEDR 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1648 EENASLKAFLQNKEKEIMCVSEQLEA--QLAGMGSG---------ALREVTYDRSSEIEELRSIIENLRENQQRLQKEKA 1716
Cdd:PRK02224 475 ERVEELEAELEDLEEEVEEVEERLERaeDLVEAEDRierleerreDLEELIAERRETIEEKRERAEELRERAAELEAEAE 554
|
410
....*....|....*..
gi 1953366515 1717 EEMEQLHEVIERLQEEL 1733
Cdd:PRK02224 555 EKREAAAEAEEEAEEAR 571
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
1352-1751 |
6.05e-05 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 48.74 E-value: 6.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1352 EDSALRREVECLTQEQSEARKQSEKDRAALLSQMKVFEAELEEQLSRHEACAKQAEELSALRQQMAALDKHLRSQR---- 1427
Cdd:pfam07888 49 AQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEELSEEKDALLAQRaahe 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1428 ----------QFMDEQAVEREHEREEFQREIQRLEEQLRQAArprphgprvSDEEQLDEEVELLQEKLREKSDGFNELVI 1497
Cdd:pfam07888 129 arireleediKTLTQRVLERETELERMKERAKKAGAQRKEEE---------AERKQLQAKLQQTEEELRSLSKEFQELRN 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1498 KKELADRQVMIQEEEIRRLEETNASCRREAAQ---LREELERQRDAMKALQQDKEALQEKQMSNLLLVSTLQSKLDEGRc 1574
Cdd:pfam07888 200 SLAQRDTQVLQLQDTITTLTQKLTTAHRKEAEneaLLEELRSLQERLNASERKVEGLGEELSSMAAQRDRTQAELHQAR- 278
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1575 pvppadscpegpevqLEAVQRALQQRESEvLDLKEQLGKMkddlvSKSDEVLHLNLELDAQSsraavsVRELQEENASLK 1654
Cdd:pfam07888 279 ---------------LQAAQLTLQLADAS-LALREGRARW-----AQERETLQQSAEADKDR------IEKLSAELQRLE 331
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1655 AFLQNKEKEimcvSEQLEAQLAGMGSGALREVTyDRSSEIEELRSIIENLRENQQRLQKEKAEEMEQLHEVIERLQEELS 1734
Cdd:pfam07888 332 ERLQEERME----REKLEVELGREKDCNRVQLS-ESRRELQELKASLRVAQKEKEQLQAEKQELLEYIRQLEQRLETVAD 406
|
410
....*....|....*..
gi 1953366515 1735 LGAPAVPAAVDCELPAV 1751
Cdd:pfam07888 407 AKWSEAALTSTERPDSP 423
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1216-1904 |
6.83e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.91 E-value: 6.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1216 TRQLEEARQIHSRFEKEFSCKNEETAQVVRKQQQLLERL----EEENAARTRLMLELH----QAQGIIEGFKEEKASLQE 1287
Cdd:TIGR02169 243 ERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIkdlgEEEQLRVKEKIGELEaeiaSLERSIAEKERELEDAEE 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1288 ALCRQETAEHGLAEELEGLRQQLQQAAQQQAELKEENSALwSQKEASAAEAEAREAGTPAPIAHEDSALRREVECLTQEQ 1367
Cdd:TIGR02169 323 RLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAEL-KEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREI 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1368 SE-----ARKQSEKDR------------AALLSQMKVFEAELEEqlsRHEACAKQAEELSALRQQMAALDKHLRSQRQfm 1430
Cdd:TIGR02169 402 NElkrelDRLQEELQRlseeladlnaaiAGIEAKINELEEEKED---KALEIKKQEWKLEQLAADLSKYEQELYDLKE-- 476
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1431 DEQAVEREheREEFQREIQRLEEQlRQAARPRPHGpRVSDEEQLDEEVELLQEKLRE----------------------- 1487
Cdd:TIGR02169 477 EYDRVEKE--LSKLQRELAEAEAQ-ARASEERVRG-GRAVEEVLKASIQGVHGTVAQlgsvgeryataievaagnrlnnv 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1488 --KSDGFNELVI---KKELADRQVMIQEEEIRRLEETNASCRRE-----AAQLREELERQRDAMKALQQDKEALQE---- 1553
Cdd:TIGR02169 553 vvEDDAVAKEAIellKRRKAGRATFLPLNKMRDERRDLSILSEDgvigfAVDLVEFDPKYEPAFKYVFGDTLVVEDieaa 632
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1554 -KQMSNLLLVsTLQSKLDEgrcpvpPADSCPEGPEVQLEAVQRALQQREsEVLDLKEQLGKMKDDLVSKSDEVLHLNLEL 1632
Cdd:TIGR02169 633 rRLMGKYRMV-TLEGELFE------KSGAMTGGSRAPRGGILFSRSEPA-ELQRLRERLEGLKRELSSLQSELRRIENRL 704
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1633 DAQSSRAAVSVRELQEenaslkaflqnKEKEImcvsEQLEAQLAgmgsgALREVTYDRSSEIEELRSIIENLRENQQRLQ 1712
Cdd:TIGR02169 705 DELSQELSDASRKIGE-----------IEKEI----EQLEQEEE-----KLKERLEELEEDLSSLEQEIENVKSELKELE 764
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1713 KEKAEEMEQLHEvierLQEELSlgapavpaavdcELPAVPAPAVGPEALAAAGAASRLFAEQEHRhGQALEALQQRLQAA 1792
Cdd:TIGR02169 765 ARIEELEEDLHK----LEEALN------------DLEARLSHSRIPEIQAELSKLEEEVSRIEAR-LREIEQKLNRLTLE 827
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1793 EEAAAGQLAELERSAALREAEVQAMASQIQAFEAALRAKEARLAERDLEIdamkrqklahsAELETILAAFSRFRRTLER 1872
Cdd:TIGR02169 828 KEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAAL-----------RDLESRLGDLKKERDELEA 896
|
730 740 750
....*....|....*....|....*....|....*.
gi 1953366515 1873 QPLAAEDEPPEL----QRLRVQCVRLSRQLQVLNQR 1904
Cdd:TIGR02169 897 QLRELERKIEELeaqiEKKRKRLSELKAKLEALEEE 932
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
1245-1918 |
8.42e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 48.68 E-value: 8.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1245 RKQQQLLERLEEENAARTRLMLELHQAQGIIEGFKeekaSLQEALCRQETAEHGLAEELEGLRQQLQQAAQQQAELKEEN 1324
Cdd:pfam12128 217 RLNRQQVEHWIRDIQAIAGIMKIRPEFTKLQQEFN----TLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLL 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1325 SAL---WSQKEASAAEAEAREAGTPAPIAHEDSALRREVECLTQEQSEARKQSEKDRAALLSQMKVFEAELEEQLSRHEA 1401
Cdd:pfam12128 293 RTLddqWKEKRDELNGELSAADAAVAKDRSELEALEDQHGAFLDADIETAAADQEQLPSWQSELENLEERLKALTGKHQD 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1402 CAKQAEELSALRQQ-----MAALDKHLRSQRQFMDEQAVErehEREEFQREIQRLEEQLRQAARprphgprvsdeeQLDE 1476
Cdd:pfam12128 373 VTAKYNRRRSKIKEqnnrdIAGIKDKLAKIREARDRQLAV---AEDDLQALESELREQLEAGKL------------EFNE 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1477 EVELLQEKLREKSDGFNELVIKKELADrQVMIQEEEIRRLEETNASCRREAAQLREELERQR----DAMKALQQDKEALQ 1552
Cdd:pfam12128 438 EEYRLKSRLGELKLRLNQATATPELLL-QLENFDERIERAREEQEAANAEVERLQSELRQARkrrdQASEALRQASRRLE 516
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1553 EKQMSnlllVSTLQSKLDegrcpvPPADSCpegpevqleavqraLQQRESEVLDLKEQLGKMKD-------DLVSKSDE- 1624
Cdd:pfam12128 517 ERQSA----LDELELQLF------PQAGTL--------------LHFLRKEAPDWEQSIGKVISpellhrtDLDPEVWDg 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1625 -------VLHLNLELDA-QSSRAAVSVRELQEENASLKAFLQNKEKEIMCVSEQLeaqlaGMGSGALREVtydrSSEIEE 1696
Cdd:pfam12128 573 svggelnLYGVKLDLKRiDVPEWAASEEELRERLDKAEEALQSAREKQAAAEEQL-----VQANGELEKA----SREETF 643
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1697 LRSIIENLRENQQRLQKEKAEEMEQLHEVIERLQEElslgapAVPAAVDCElpavpapavgpeaLAAAGAASRLFAEQEH 1776
Cdd:pfam12128 644 ARTALKNARLDLRRLFDEKQSEKDKKNKALAERKDS------ANERLNSLE-------------AQLKQLDKKHQAWLEE 704
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1777 RHGQALEALQQRLQAAEEAAAGQLAELERSAALREAEVQAMASQIQAFE-------AALRAKEARLAERDLEIDAMKRqK 1849
Cdd:pfam12128 705 QKEQKREARTEKQAYWQVVEGALDAQLALLKAAIAARRSGAKAELKALEtwykrdlASLGVDPDVIAKLKREIRTLER-K 783
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1953366515 1850 LAHSAELETILAAFSRFRR---TLERQPLAAEDEPPE--LQRLRVQCVRLSRQLQVLNQRFLRCQKEADKQQAR 1918
Cdd:pfam12128 784 IERIAVRRQEVLRYFDWYQetwLQRRPRLATQLSNIEraISELQQQLARLIADTKLRRAKLEMERKASEKQQVR 857
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1216-1731 |
1.28e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 47.71 E-value: 1.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1216 TRQLEEARQIHSRFEKEFSCKNEE----TAQVVRKQQQLLERLEEENAARTRL---MLELHQAQGII----EGFKEEKAS 1284
Cdd:TIGR04523 217 ESQISELKKQNNQLKDNIEKKQQEinekTTEISNTQTQLNQLKDEQNKIKKQLsekQKELEQNNKKIkeleKQLNQLKSE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1285 LQEaLCRQetAEHGLAEEL-EGLRQQLQQAAQQQAELKEENSALWSQKEasaaeaeareagtpapiahEDSALRREVECL 1363
Cdd:TIGR04523 297 ISD-LNNQ--KEQDWNKELkSELKNQEKKLEEIQNQISQNNKIISQLNE-------------------QISQLKKELTNS 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1364 TQEQSEARKQSEKDraalLSQMKVFEAELEEQLsrheacakqaEELSALRQQMAALDKHLRSQR---QFMDEQAVEREHE 1440
Cdd:TIGR04523 355 ESENSEKQRELEEK----QNEIEKLKKENQSYK----------QEIKNLESQINDLESKIQNQEklnQQKDEQIKKLQQE 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1441 REEFQREIQRLEEQLrqaarprphgprvsdeEQLDEEVELLQEKLREKSDGFNELVIKKEladrqvmIQEEEIRRLEETN 1520
Cdd:TIGR04523 421 KELLEKEIERLKETI----------------IKNNSEIKDLTNQDSVKELIIKNLDNTRE-------SLETQLKVLSRSI 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1521 ASCRREAAQLREELERQRDAMKALQQDKEALQEKqmsnlllVSTLQSKLDEGrcpvppadscpegpEVQLEAVQRALQQR 1600
Cdd:TIGR04523 478 NKIKQNLEQKQKELKSKEKELKKLNEEKKELEEK-------VKDLTKKISSL--------------KEKIEKLESEKKEK 536
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1601 ESEVLDLKEQLGKMKDDLVSKS--DEVLHLNLELDaqssraavsvrELQEENASLKA-------FLQNKEKEIMCVSEQL 1671
Cdd:TIGR04523 537 ESKISDLEDELNKDDFELKKENleKEIDEKNKEIE-----------ELKQTQKSLKKkqeekqeLIDQKEKEKKDLIKEI 605
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1672 EAQlaGMGSGALREVTYDRSSEIEELRSIIENLRENQQRLQKEKAEEMEQLHEVIERLQE 1731
Cdd:TIGR04523 606 EEK--EKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPE 663
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
1643-1728 |
1.35e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 47.55 E-value: 1.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1643 VRELQEENASLKAFLQNKEKEImcvsEQLEAQLAGMGSGALREVTYDRS-----SEIEELRSIIENLRENQQRLqKEKAE 1717
Cdd:COG2433 422 VERLEAEVEELEAELEEKDERI----ERLERELSEARSEERREIRKDREisrldREIERLERELEEERERIEEL-KRKLE 496
|
90
....*....|.
gi 1953366515 1718 EMEQLHEVIER 1728
Cdd:COG2433 497 RLKELWKLEHS 507
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
2605-2907 |
1.35e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 48.03 E-value: 1.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2605 EAQKEVLQLRSVLDSKESNLRAALQELESERGKERALQSRLEEAQ---------LQHLQREGQSSKTLEELRASLEKQfa 2675
Cdd:PRK04863 290 ELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASdhlnlvqtaLRQQEKIERYQADLEELEERLEEQ-- 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2676 qssQLCVALKHEQtakdnlQKELQIEASRCEALLAQERGQLSELQRSLEAEKGRSLELAAALRH-ERllTEQLSRGPRES 2754
Cdd:PRK04863 368 ---NEVVEEADEQ------QEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQAlER--AKQLCGLPDLT 436
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2755 PA-----HHALLRKLKE--EKSRAAELQARLEQVQRQQEADVQK--RRAELEREKEVRAAQAREPGRCLRREGHASQQqa 2825
Cdd:PRK04863 437 ADnaedwLEEFQAKEQEatEELLSLEQKLSVAQAAHSQFEQAYQlvRKIAGEVSRSEAWDVARELLRRLREQRHLAEQ-- 514
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2826 gLEPLQAGLAAQEGR----KDARR----------------ADVGPGRADAEMRPTGAKEKLRELELQRQRDEHKIRQLQR 2885
Cdd:PRK04863 515 -LQQLRMRLSELEQRlrqqQRAERllaefckrlgknlddeDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQA 593
|
330 340
....*....|....*....|....
gi 1953366515 2886 TVQALEAKEEA--AQRPEAERLQE 2907
Cdd:PRK04863 594 RIQRLAARAPAwlAAQDALARLRE 617
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1355-1557 |
1.37e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.99 E-value: 1.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1355 ALRREVECLTQEQSEARKQSEKDRAALlsqmkvfeAELEEQLSRHEACAKQAEE---LSALRQQMAALDKHLRSQRQFMD 1431
Cdd:COG4913 614 ALEAELAELEEELAEAEERLEALEAEL--------DALQERREALQRLAEYSWDeidVASAEREIAELEAELERLDASSD 685
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1432 E-QAVEREheREEFQREIQRLEEQLRQAARprphgprvsDEEQLDEEVELLQEKLREKSDgfnelvikkELADRQVMIQE 1510
Cdd:COG4913 686 DlAALEEQ--LEELEAELEELEEELDELKG---------EIGRLEKELEQAEEELDELQD---------RLEAAEDLARL 745
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1953366515 1511 EEIRRLEET--NASCRREAAQLREELERQRDAMKALQQDKEALQEKQMS 1557
Cdd:COG4913 746 ELRALLEERfaAALGDAVERELRENLEERIDALRARLNRAEEELERAMR 794
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
1432-1548 |
1.40e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 47.55 E-value: 1.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1432 EQAVEREHEREEFQREIQRLEEQLRQAARPRPHGPRVSDE-EQLDEEVELLQEKLREKSDGFNElvikKELADRQVMIQE 1510
Cdd:COG2433 396 EAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAElEEKDERIERLERELSEARSEERR----EIRKDREISRLD 471
|
90 100 110
....*....|....*....|....*....|....*...
gi 1953366515 1511 EEIRRLEETNASCRREAAQLREELERQRDAMKALQQDK 1548
Cdd:COG2433 472 REIERLERELEEERERIEELKRKLERLKELWKLEHSGE 509
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
2626-2858 |
1.42e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.07 E-value: 1.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2626 AALQELESERGKERALQSRLEEAQlQHLQREGQSSKTLEELRASLEKQFAQSSQLCVALKHEQTAKDNLQKELQIEASRC 2705
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELE-KELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2706 EALLAQERGQLSELQRSLEAEKGRSL--------ELAAALRHERLLTEQlsrgpreSPAHHALLRKLKEEKSRAAELQAR 2777
Cdd:COG4942 96 RAELEAQKEELAELLRALYRLGRQPPlalllspeDFLDAVRRLQYLKYL-------APARREQAEELRADLAELAALRAE 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2778 LEQVQRQQE---ADVQKRRAELEREKEVRAAQAREPGRCLRREGHA----SQQQAGLEPLQAGLAAQEGRKDARRADVGP 2850
Cdd:COG4942 169 LEAERAELEallAELEEERAALEALKAERQKLLARLEKELAELAAElaelQQEAEELEALIARLEAEAAAAAERTPAAGF 248
|
....*...
gi 1953366515 2851 GRADAEMR 2858
Cdd:COG4942 249 AALKGKLP 256
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
949-1732 |
1.63e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 47.66 E-value: 1.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 949 LAELRQETGKQQLHCQEEPEVLECPSEPfLEQQILQPKGEFESEKKVALHEKEIHGlECAQAQSLYQKEKESLFLQLQEK 1028
Cdd:pfam02463 221 LEEEYLLYLDYLKLNEERIDLLQELLRD-EQEEIESSKQEIEKEEEKLAQVLKENK-EEEKEKKLQEEELKLLAKEEEEL 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1029 NNQILQLKEQILSLSHEVEERRRDLEQLQQRRERENQEGTNLISMLKSdADLSDRERRALRDALRRLLSLFGEMLKVAIA 1108
Cdd:pfam02463 299 KSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKE-LEIKREAEEEEEEELEKLQEKLEQLEEELLA 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1109 LKSRISERVGLCLEDEDPPGAWPSGQALSAAPVLEETWPGSEAALLELDRSLPECVEMPSEAE-------ISSHICESFF 1181
Cdd:pfam02463 378 KKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIElkqgkltEEKEELEKQE 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1182 MSPESSLEYEQPIRRIYQSLGLAVEGLLELALDSTRQLEEARQ----IHSRFEKEFSCKNEETAQVVRKQQQLLERLEE- 1256
Cdd:pfam02463 458 LKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQkeskARSGLKVLLALIKDGVGGRIISAHGRLGDLGVa 537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1257 ----ENAARTRLMLELHQAQGIIEGFKEEKASL--------------QEALCRQETAEHGLAEELEGLRQQLQQAAQQQA 1318
Cdd:pfam02463 538 venyKVAISTAVIVEVSATADEVEERQKLVRALtelplgarklrlliPKLKLPLKSIAVLEIDPILNLAQLDKATLEADE 617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1319 ELKEENSALWSQKEASAAEAEAREAGTPAPIAHEDSALRREVECLTQEQSEARKQSEKDRAALLSQMKVFEAELEEQlSR 1398
Cdd:pfam02463 618 DDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEI-LR 696
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1399 HEACAKQAEELSALRQQMAALDKHLRSQRQFMDEQAVEREHEREEFQREIQRLEEQLRqaarprphgprvSDEEQLDEEV 1478
Cdd:pfam02463 697 RQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEK------------SRLKKEEKEE 764
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1479 ELLQEKLREKSdgfNELVIKKELADRQVMIQEEEIRRLEETNAScRREAAQLREELERQRDAMKALQQDKEALQEKQMSN 1558
Cdd:pfam02463 765 EKSELSLKEKE---LAEEREKTEKLKVEEEKEEKLKAQEEELRA-LEEELKEEAELLEEEQLLIEQEEKIKEEELEELAL 840
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1559 LLLVSTLQSKLDEGRcpvppadscpegpEVQLEAVQRALQQRESEVLDLKEQLGKMKDDLVSKSDEVLHLNLELDAQSSR 1638
Cdd:pfam02463 841 ELKEEQKLEKLAEEE-------------LERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQ 907
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1639 AAVSVRELQEENASLKAFLQNKE--KEIMCVSEQLEAQLAGMGSGALREVTYDRSSEIEELRSIIENLRENQQRLQKEKA 1716
Cdd:pfam02463 908 KLNLLEEKENEIEERIKEEAEILlkYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKE 987
|
810
....*....|....*.
gi 1953366515 1717 EEMEQLHEVIERLQEE 1732
Cdd:pfam02463 988 ERYNKDELEKERLEEE 1003
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
2474-2748 |
1.86e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 47.60 E-value: 1.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2474 VVQEQEKSLEHLRASDRSSllSEIQALRAQL-----RMThlQNQEKLQQLCAALTSA-------------EAR-GSRQEH 2534
Cdd:PRK11281 61 VQQDLEQTLALLDKIDRQK--EETEQLKQQLaqapaKLR--QAQAELEALKDDNDEEtretlstlslrqlESRlAQTLDQ 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2535 QLRRQVELLAYKVE------QEKRiasdVQKTLTEEQEKASSVRKLLVVEQTVVRDLRSELRECKQDNERLLASLGEAQK 2608
Cdd:PRK11281 137 LQNAQNDLAEYNSQlvslqtQPER----AQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQR 212
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2609 EVLQLRSVLdskesnlraalQELESERGKERALQSRLEEAQLQHLQ------REGQSSKTLEELRASLEKQFAQSSQLcv 2682
Cdd:PRK11281 213 KSLEGNTQL-----------QDLLQKQRDYLTARIQRLEHQLQLLQeainskRLTLSEKTVQEAQSQDEAARIQANPL-- 279
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1953366515 2683 alkheqtakdnLQKELQIEASRCEALLAQERgQLSEL-QRSLEAEKgrslELAAALRHERLLTEQLS 2748
Cdd:PRK11281 280 -----------VAQELEINLQLSQRLLKATE-KLNTLtQQNLRVKN----WLDRLTQSERNIKEQIS 330
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
2480-2909 |
1.92e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 47.53 E-value: 1.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2480 KSLEHLRASDRSSLLSEIQALRAQLRMTHLQNQEKLQQLCAALTSAEARGSRQEHQLRR-----------QVELLAYKVE 2548
Cdd:pfam12128 268 KSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELEAledqhgafldaDIETAAADQE 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2549 QEKRIASDVQ------KTLTEEQ---EKASSVRKLLVVEQ--TVVRDLRSELRECKQDNERLLASL-GEAQKEVLQLRSV 2616
Cdd:pfam12128 348 QLPSWQSELEnleerlKALTGKHqdvTAKYNRRRSKIKEQnnRDIAGIKDKLAKIREARDRQLAVAeDDLQALESELREQ 427
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2617 LDSKESNLRAALQELESERGKERALQSRLEEAQLQHLQREgQSSKTLEELRASLEKQFAQSSQLCVALKHEQTAKDNLQK 2696
Cdd:pfam12128 428 LEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQLE-NFDERIERAREEQEAANAEVERLQSELRQARKRRDQASE 506
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2697 ELQieasRCEALLAQERGQLSELQRSLEAEKGRSLELaaaLRHERLLTEQlSRGPRESPA--HHALLRKLKEEKSRAAEL 2774
Cdd:pfam12128 507 ALR----QASRRLEERQSALDELELQLFPQAGTLLHF---LRKEAPDWEQ-SIGKVISPEllHRTDLDPEVWDGSVGGEL 578
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2775 -----QARLEQVQRQQEADvqkrraeLEREKEVRAAQAREPgrclRREGHASQQQAGLEPLQAGLAAQEGRKDARRADVG 2849
Cdd:pfam12128 579 nlygvKLDLKRIDVPEWAA-------SEEELRERLDKAEEA----LQSAREKQAAAEEQLVQANGELEKASREETFARTA 647
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2850 PGRADAEMRPTGAKEKLRELELQRQRDEHKiRQLQRTVQALEAKEEAAQRPEAERLQEER 2909
Cdd:pfam12128 648 LKNARLDLRRLFDEKQSEKDKKNKALAERK-DSANERLNSLEAQLKQLDKKHQAWLEEQK 706
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1219-1838 |
2.08e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 47.36 E-value: 2.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1219 LEEARQIHSRFEKEFSCKNEETAQVVRKQQQLLERLEEENAARTRLMLELHQAQGIIEGFKEEKASLQEALCR------- 1291
Cdd:TIGR02168 290 LYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEEleaelee 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1292 QETAEHGLAEELEGLRQQLQQAAQQQAELKEENSALWSQKeasaaeaeareagtpapiahedSALRREVECLTQEQSEAR 1371
Cdd:TIGR02168 370 LESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARL----------------------ERLEDRRERLQQEIEELL 427
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1372 KQ-SEKDRAALLSQMKVFEAELEEQLSRHEACAKQAEELSALRQQMAALDKHLRSQRQFMDEQAVEREHEREEFQREIQR 1450
Cdd:TIGR02168 428 KKlEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEG 507
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1451 LEEQLRQAARPRPHGPRVSDEEQLDEEVEL-LQEKLREKSDgfNELVIKKELADRQV--MIQEEEIRR--LEETNASCRR 1525
Cdd:TIGR02168 508 VKALLKNQSGLSGILGVLSELISVDEGYEAaIEAALGGRLQ--AVVVENLNAAKKAIafLKQNELGRVtfLPLDSIKGTE 585
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1526 EAAQLREELERQRDAMKALQQDKEALQEKQ------MSNLLLVSTLQS------KLDEGRCPVPPAD------------- 1580
Cdd:TIGR02168 586 IQGNDREILKNIEGFLGVAKDLVKFDPKLRkalsylLGGVLVVDDLDNalelakKLRPGYRIVTLDGdlvrpggvitggs 665
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1581 ------------------SCPEGPEVQLEAVQRALQQRESEVLDLKEQLGKMKDDLVSKSDEVLHLNLELD---AQSSRA 1639
Cdd:TIGR02168 666 aktnssilerrreieeleEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLArleAEVEQL 745
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1640 AVSVRELQEENASLKAFLQNKEKEIMCVSEQLEAQLAGMGS------GALREVTYDRSsEIEELRSIIENLRENQQRLQ- 1712
Cdd:TIGR02168 746 EERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEEleaqieQLKEELKALRE-ALDELRAELTLLNEEAANLRe 824
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1713 ---------KEKAEEMEQLHEVIERLQEELSLGAPAVPaavDCELPAvpapavgPEALAAAGAASRLFAEQEHRHGQALE 1783
Cdd:TIGR02168 825 rleslerriAATERRLEDLEEQIEELSEDIESLAAEIE---ELEELI-------EELESELEALLNERASLEEALALLRS 894
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*
gi 1953366515 1784 ALQQRLQAAEEAAAGQLAELERSAALREAEVQaMASQIQAFEAALRAKEARLAER 1838
Cdd:TIGR02168 895 ELEELSEELRELESKRSELRRELEELREKLAQ-LELRLEGLEVRIDNLQERLSEE 948
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
164-314 |
2.19e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.22 E-value: 2.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 164 KEKETALTELRAMLNGRHAQELALLRSRQQQELELAREQHAREQEEMRlRCSQETAKLKEKL----QSEMERNARAVESL 239
Cdd:COG4913 265 AAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELE-RLEARLDALREELdeleAQIRGNGGDRLEQL 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 240 KRD---WESERGLCLENLRR--------ELSAKH-RSELENLQDQFKRELSEQKAELEKIFQAKNQAECALRTLEAQHEE 307
Cdd:COG4913 344 EREierLERELEERERRRARleallaalGLPLPAsAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRE 423
|
....*..
gi 1953366515 308 ALRQLRE 314
Cdd:COG4913 424 LEAEIAS 430
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
2537-2796 |
2.24e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.22 E-value: 2.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2537 RRQVELLAYKVEQEKRIASDVQKTLTEEQEKASSVRKLLVVEQTVVR------DLRSELRECkQDNERLLASLGEAQKEV 2610
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEyswdeiDVASAEREI-AELEAELERLDASSDDL 687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2611 LQLRSVLDSKESNLRAALQELESERGKERALQSRLEEA--QLQHLQR--EGQSSKTLEELRASLEKQFAQSSQlcvaLKH 2686
Cdd:COG4913 688 AALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAeeELDELQDrlEAAEDLARLELRALLEERFAAALG----DAV 763
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2687 EQTAKDNLQKE---LQIEASRCEALLAQERGQLSELQRSLEAEKGRSLELAAALR--HERLLTEQLsrgpresPAHHALL 2761
Cdd:COG4913 764 ERELRENLEERidaLRARLNRAEEELERAMRAFNREWPAETADLDADLESLPEYLalLDRLEEDGL-------PEYEERF 836
|
250 260 270
....*....|....*....|....*....|....*..
gi 1953366515 2762 RKLKEEKSRA--AELQARLeqvqRQQEADVQKRRAEL 2796
Cdd:COG4913 837 KELLNENSIEfvADLLSKL----RRAIREIKERIDPL 869
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1438-1858 |
2.65e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 46.96 E-value: 2.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1438 EHEREEFQREIQRLEEQLRQAARPRphgprvsdeeqldEEVELLQEKLREKSDGFNELvikkeladrqvmiqEEEIRRLE 1517
Cdd:PRK02224 212 ESELAELDEEIERYEEQREQARETR-------------DEADEVLEEHEERREELETL--------------EAEIEDLR 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1518 ETNASCRREAAQLREELERQRDAmkalqqdkealqekqmsnlllVSTLQSKLDEGRCPVPPADSCPEGPEVQLEAVQRAL 1597
Cdd:PRK02224 265 ETIAETEREREELAEEVRDLRER---------------------LEELEEERDDLLAEAGLDDADAEAVEARREELEDRD 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1598 QQRESEVLDLKEQLGKMKDDLVSKSDEVLHLNleldaqsSRAAvsvrELQEENASLKAFLQNKEKEIMCVSEQLEAQLAG 1677
Cdd:PRK02224 324 EELRDRLEECRVAAQAHNEEAESLREDADDLE-------ERAE----ELREEAAELESELEEAREAVEDRREEIEELEEE 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1678 MGSgaLREVTYDRSSEIEELRSIIENLRENQQRLQKEKAEEMEQLHEVIERLQEelslgAPAVPAAVDCelpavpapavg 1757
Cdd:PRK02224 393 IEE--LRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEE-----AEALLEAGKC----------- 454
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1758 PEALAAAGAASRLFAEQEHRhgQALEALQQRLQAAEEAAAGQLAELERSAALREAE--VQAMASQIQAFEAALRAKEARL 1835
Cdd:PRK02224 455 PECGQPVEGSPHVETIEEDR--ERVEELEAELEDLEEEVEEVEERLERAEDLVEAEdrIERLEERREDLEELIAERRETI 532
|
410 420
....*....|....*....|...
gi 1953366515 1836 AERDLEIDAMKRQKLAHSAELET 1858
Cdd:PRK02224 533 EEKRERAEELRERAAELEAEAEE 555
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1214-1548 |
2.81e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.06 E-value: 2.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1214 DSTRQLEEARQIHSRFEKEFSCKNEET--AQVVRKQQQLlERLEEENAARTRLMLELHQAQgiiEGFKEEKASLQEALCR 1291
Cdd:PTZ00121 1525 DEAKKAEEAKKADEAKKAEEKKKADELkkAEELKKAEEK-KKAEEAKKAEEDKNMALRKAE---EAKKAEEARIEEVMKL 1600
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1292 QETAEHGLAEELEglrqQLQQAAQQQAELKEENSALWSQKEASAAEAEAREAGTPAPIAHEDSALRREVECLTQEQ---- 1367
Cdd:PTZ00121 1601 YEEEKKMKAEEAK----KAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEdkkk 1676
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1368 -SEARKQSEKDR-AALLSQMKVFEAELEEQLSRHEAC-AKQAEELsalrqqmaaldKHLRSQRQFMDEQAvEREHEREEF 1444
Cdd:PTZ00121 1677 aEEAKKAEEDEKkAAEALKKEAEEAKKAEELKKKEAEeKKKAEEL-----------KKAEEENKIKAEEA-KKEAEEDKK 1744
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1445 QREIQRLEEQLRQAARPRPHGPRVSDEEQLDEEVELLQEKLREKSDGFNELVIK--KELADRQVMIQEEEIRRLEETNAS 1522
Cdd:PTZ00121 1745 KAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKkiKDIFDNFANIIEGGKEGNLVINDS 1824
|
330 340
....*....|....*....|....*....
gi 1953366515 1523 CRREAAQLREELER---QRDAMKALQQDK 1548
Cdd:PTZ00121 1825 KEMEDSAIKEVADSknmQLEEADAFEKHK 1853
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
169-439 |
2.98e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.98 E-value: 2.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 169 ALTELRAMLNGRHAQELALLRSRQQQELELAREQHAREQEEMRLRCSQETAKLKEKLQSEMERNARAvESLKRDWESERG 248
Cdd:TIGR02169 659 SRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEI-EQLEQEEEKLKE 737
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 249 LcLENLRRELSAKHRsELENLqdqfKRELSEQKAELEKIFQAKNQAECALRTLEAQ-HEEALRQLREDLQSERcQYVQDL 327
Cdd:TIGR02169 738 R-LEELEEDLSSLEQ-EIENV----KSELKELEARIEELEEDLHKLEEALNDLEARlSHSRIPEIQAELSKLE-EEVSRI 810
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 328 ELRLrdQEVEKQLELESLRASYAELKAQSQEEIRRLWSQLESPRPDRQDAS----------ARTPHGEELEQRERECGVQ 397
Cdd:TIGR02169 811 EARL--REIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLngkkeeleeeLEELEAALRDLESRLGDLK 888
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 1953366515 398 QQRRGRRA---EQESELGQSpEGAAERGREDPVLLEQRLQDATEE 439
Cdd:TIGR02169 889 KERDELEAqlrELERKIEEL-EAQIEKKRKRLSELKAKLEALEEE 932
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
2596-2908 |
3.06e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 46.87 E-value: 3.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2596 NER--LLASLGEAQKEVLQLRSVLDSKESNLRAALQELESERGKERALQSRLEEAQ---------LQHLQREGQSSKTLE 2664
Cdd:COG3096 278 NERreLSERALELRRELFGARRQLAEEQYRLVEMARELEELSARESDLEQDYQAASdhlnlvqtaLRQQEKIERYQEDLE 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2665 ELRASLEKQfaqssQLCVALKHEQtakdnlQKELQIEASRCEALLAQERGQLSELQRSLEAEKGRSLELAAALRH-ERll 2743
Cdd:COG3096 358 ELTERLEEQ-----EEVVEEAAEQ------LAEAEARLEAAEEEVDSLKSQLADYQQALDVQQTRAIQYQQAVQAlEK-- 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2744 TEQLSRGPRESPA-----HHALLRKLKE--EKSRAAELQARLEQVQRQQ-----------------EADVQKRRAELERE 2799
Cdd:COG3096 425 ARALCGLPDLTPEnaedyLAAFRAKEQQatEEVLELEQKLSVADAARRQfekayelvckiageverSQAWQTARELLRRY 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2800 KEVRAAQAREPG--RCLRREGHASQQQAGLEPLQAGLAAQEGRKDARRADVGPGRADAEMRPTGAKEKLRELELQRQRDE 2877
Cdd:COG3096 505 RSQQALAQRLQQlrAQLAELEQRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQRSELR 584
|
330 340 350
....*....|....*....|....*....|...
gi 1953366515 2878 HKIRQLQRTVQALEAKEEA--AQRPEAERLQEE 2908
Cdd:COG3096 585 QQLEQLRARIKELAARAPAwlAAQDALERLREQ 617
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
2461-2922 |
4.90e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 46.12 E-value: 4.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2461 PGEHSSLLERLEKVVQEQEKSLEHLRASdrSSLLSEIQALRAQLRMTHLQNQEKLQQLCAALTSAEARGSRQEHQLRRQV 2540
Cdd:TIGR00618 162 SKEKKELLMNLFPLDQYTQLALMEFAKK--KSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQ 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2541 ELLAYKVEQEkriasdvqktltEEQEKASSVRKLLVVEQTVVRDLRSELRECKQDNERL-----LASLGEAQKEVLQLRS 2615
Cdd:TIGR00618 240 QSHAYLTQKR------------EAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERInrarkAAPLAAHIKAVTQIEQ 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2616 VLDSKESNLRAALQELESERGKERALQSRLEEAQ-----LQHLQREGQSSKTLEELRASLEKQFAQSSQLCVALKHEQTA 2690
Cdd:TIGR00618 308 QAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEeqrrlLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQ 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2691 KDNLQKELQIEASRCEALLAQERGQLSELQRS-------LEAEKGRSLELAAALRHERLLTEQLSRGPRESPAHHALLRK 2763
Cdd:TIGR00618 388 KTTLTQKLQSLCKELDILQREQATIDTRTSAFrdlqgqlAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQS 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2764 LKEEKSRAAELQARLEQVQR--QQEADVQKRRAELEREKEvraaqarepGRCLRREGHAsQQQAGLEPLQAGLAAQEgrk 2841
Cdd:TIGR00618 468 LKEREQQLQTKEQIHLQETRkkAVVLARLLELQEEPCPLC---------GSCIHPNPAR-QDIDNPGPLTRRMQRGE--- 534
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2842 dARRADVGPGRADAEMRPTGAKEKLRELELQRQRDEHKIRQLQRTVQALEAKEEAAQRPEaERLQEERLGLERVRQQLLC 2921
Cdd:TIGR00618 535 -QTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNIT-VRLQDLTEKLSEAEDMLAC 612
|
.
gi 1953366515 2922 A 2922
Cdd:TIGR00618 613 E 613
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
2518-2756 |
5.20e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.53 E-value: 5.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2518 LCAALTSAEARGSRQEHQLRRQvellaykvEQEKRIASdVQKTLTEEQEKASSVRKLLVVEQTVVRDLRSELRECKQDNE 2597
Cdd:COG4942 9 LLLALAAAAQADAAAEAEAELE--------QLQQEIAE-LEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2598 RLLASLGEAQKEVLQLRSVLDSKESNLR---AALQELESERGKERALQSRLEEAQLQHLQREGQSSKTLEELRASLEKQF 2674
Cdd:COG4942 80 ALEAELAELEKEIAELRAELEAQKEELAellRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2675 AQSSQLCVALKHEQTAKDNLQKELQIEASRCEALLAQERGQLSELQRSLEAEKGRSLELAAALRHERLLTEQLSRGPRES 2754
Cdd:COG4942 160 AELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAA 239
|
..
gi 1953366515 2755 PA 2756
Cdd:COG4942 240 AE 241
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
2465-2807 |
5.35e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 45.87 E-value: 5.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2465 SSLLERLEKVVQEQEKSLEHLRA--SDRSSLLSEiqalRAQLRMTHLQNQEKLQQLCAALTSAEARGSRQEHQLRRQVEL 2542
Cdd:pfam05483 390 SSELEEMTKFKNNKEVELEELKKilAEDEKLLDE----KKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTS 465
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2543 LAYKVEQEKRIASDVQKTLTEEQEKASSVRKLLVVEQTVVR---DLRSELRE-------CKQDNERLLASLGEAQKEVLQ 2612
Cdd:pfam05483 466 EEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQeasDMTLELKKhqediinCKKQEERMLKQIENLEEKEMN 545
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2613 LRSVLDSKESNLRAALQELESERGKERALQSRLEEAQLQHLQREGQSSKTLEELRASLE---KQFAQSSQLCVALKHEQT 2689
Cdd:pfam05483 546 LRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIEnknKNIEELHQENKALKKKGS 625
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2690 AKDNLQKELQIEASRCEALLAQERGQLSEL----QRSLEAEKGRSLELAAALRHERLLTEQLSRGPRESPahhallrklK 2765
Cdd:pfam05483 626 AENKQLNAYEIKVNKLELELASAKQKFEEIidnyQKEIEDKKISEEKLLEEVEKAKAIADEAVKLQKEID---------K 696
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 1953366515 2766 EEKSRAAELQARLEQVQRQQEADVQKRRAEL----EREKEVRAAQA 2807
Cdd:pfam05483 697 RCQHKIAEMVALMEKHKHQYDKIIEERDSELglykNKEQEQSSAKA 742
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2642-3006 |
5.58e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.82 E-value: 5.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2642 QSRLEEAQlQHLQREGQsskTLEELRASLEKQFAQSSQlCVALKHEQTAKDNLQKELQIeasrceALLAQERGQLSELQR 2721
Cdd:TIGR02168 178 ERKLERTR-ENLDRLED---ILNELERQLKSLERQAEK-AERYKELKAELRELELALLV------LRLEELREELEELQE 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2722 SLEAEKGRSLELAAALRherLLTEQLSRGPRESPAHHALLRKLKEEKSRAAELQARLEQVQRQQeadvQKRRAELEREKE 2801
Cdd:TIGR02168 247 ELKEAEEELEELTAELQ---ELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQIL----RERLANLERQLE 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2802 VRAAQAREPGR---CLRREGHASQQQagLEPLQAGLAAQEGRKDARRADvgpgRADAEMRPTGAKEKLRELELQRQRDEH 2878
Cdd:TIGR02168 320 ELEAQLEELESkldELAEELAELEEK--LEELKEELESLEAELEELEAE----LEELESRLEELEEQLETLRSKVAQLEL 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2879 KIRQLQRTVQALEAKEEAAQRpEAERLQEERLGLERvrqQLLCAAGLLTSFISRTVDRTISDWTSSNEKAVTsLLHTLEE 2958
Cdd:TIGR02168 394 QIASLNNEIERLEARLERLED-RRERLQQEIEELLK---KLEEAELKELQAELEELEEELEELQEELERLEE-ALEELRE 468
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2959 LKSELSTPSSSQKKMTAELQTQL--VDVLLKDNDSLTKALRTVTQEKAEL 3006
Cdd:TIGR02168 469 ELEEAEQALDAAERELAQLQARLdsLERLQENLEGFSEGVKALLKNQSGL 518
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
126-346 |
5.67e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.82 E-value: 5.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 126 QQVQLQTQPVPSLELEALRLSLSNMHTAQleltQANLQKEKETALTELRAMLNGRHAQELALLRSRQQQELELarEQHAR 205
Cdd:TIGR02168 302 QQKQILRERLANLERQLEELEAQLEELES----KLDELAEELAELEEKLEELKEELESLEAELEELEAELEEL--ESRLE 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 206 EQEEMRLRCSQETAKLKEKLQSEMERNARAVESLKRDWESerglcLENLRRELSAKHRSELENLQDQFKRELSEQKAELE 285
Cdd:TIGR02168 376 ELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDR-----RERLQQEIEELLKKLEEAELKELQAELEELEEELE 450
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1953366515 286 KIFQAKNQAECALRTLE---AQHEEALRQLREDLQ--SERCQYVQDLELRLRD-QEVEKQLELESLR 346
Cdd:TIGR02168 451 ELQEELERLEEALEELReelEEAEQALDAAERELAqlQARLDSLERLQENLEGfSEGVKALLKNQSG 517
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
2486-2717 |
5.92e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.14 E-value: 5.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2486 RASDRSSLLSEIQALRAQLRmthlQNQEKLQQLCAALTSAEARGSRQEHQLRRQVELLAYKVEQEKRIASDVQKTLTEEQ 2565
Cdd:COG4942 25 AEAELEQLQQEIAELEKELA----ALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2566 EKASSVRKLLVVEQTVVRDLRSEL---RECKQDNERLLASLGEAQKEVLQLRSVLDSKESNLRAALQELESERGKERALQ 2642
Cdd:COG4942 101 AQKEELAELLRALYRLGRQPPLALllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALL 180
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1953366515 2643 SRLEEAQLQHLQREGQSSKTLEELRASLEKQFAQSSQLCVALKHEQTAKDNLQKELQIEASRCEAL-LAQERGQLS 2717
Cdd:COG4942 181 AELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAgFAALKGKLP 256
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1230-1734 |
6.88e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.44 E-value: 6.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1230 EKEFscknEETAQVVRKQQQLLERLEEENAARTRLMLELHQAQGIIEGFKEEKASLQEALCRQETAEHGLAEELEGLRQQ 1309
Cdd:PRK03918 199 EKEL----EEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKE 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1310 LQQAAQQQAELKEENsalwsqkeasaaeaeareagtpaPIAHEDSALRREVECLTQEQSEArkqsEKDRAALLSQMKVFE 1389
Cdd:PRK03918 275 IEELEEKVKELKELK-----------------------EKAEEYIKLSEFYEEYLDELREI----EKRLSRLEEEINGIE 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1390 AELEEQLSRHEACAKQAEELSALRQQMAALDKHLRSQRQFMDEQAVEREHEREEFQREIQRLEEQLRQAARPRPHGPRvs 1469
Cdd:PRK03918 328 ERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEE-- 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1470 DEEQLDEEVELLQEKLREKSDGFNEL--------VIKKELAD--RQVMIQE--EEIRRLEETNASCRREAAQLREELERQ 1537
Cdd:PRK03918 406 EISKITARIGELKKEIKELKKAIEELkkakgkcpVCGRELTEehRKELLEEytAELKRIEKELKEIEEKERKLRKELREL 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1538 RdamKALQQDKEALQEKQMSNLLlvSTLQSKLDegrcpvppadscpegpEVQLEAVQRALQQRESevldLKEQLGKMKDD 1617
Cdd:PRK03918 486 E---KVLKKESELIKLKELAEQL--KELEEKLK----------------KYNLEELEKKAEEYEK----LKEKLIKLKGE 540
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1618 LVSKSDEVLHLNleldaqssraavsvrELQEENASLKAFLQNKEKEImcvsEQLEAQLAGMGSGALREVtydrSSEIEEL 1697
Cdd:PRK03918 541 IKSLKKELEKLE---------------ELKKKLAELEKKLDELEEEL----AELLKELEELGFESVEEL----EERLKEL 597
|
490 500 510 520
....*....|....*....|....*....|....*....|
gi 1953366515 1698 RSIIE---NLRENQQRLQKEKaEEMEQLHEVIERLQEELS 1734
Cdd:PRK03918 598 EPFYNeylELKDAEKELEREE-KELKKLEEELDKAFEELA 636
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
154-875 |
7.36e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.43 E-value: 7.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 154 QLELTQANLQKeKETALTELRAMLNGRHAQ-ELALlrsrQQQELELAREQHAREQEEMRLrcsQETAKLKEKLQSEMERN 232
Cdd:TIGR02168 180 KLERTRENLDR-LEDILNELERQLKSLERQaEKAE----RYKELKAELRELELALLVLRL---EELREELEELQEELKEA 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 233 ARAVESLKRDwESERGLCLENLRRElsakhRSELENLQDQFKRELSEQKAELEKIFQAKNQAECALRTLEAQHEEALRQL 312
Cdd:TIGR02168 252 EEELEELTAE-LQELEEKLEELRLE-----VSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQL 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 313 REDLQS-----ERCQYVQDLELRLRDQEVEKQLELESLRASYAELKAQSQE------------------------EIRRL 363
Cdd:TIGR02168 326 EELESKldelaEELAELEEKLEELKEELESLEAELEELEAELEELESRLEEleeqletlrskvaqlelqiaslnnEIERL 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 364 WSQLES--PRPDRQDASARTPHGEELEQRERECGVQQQRRGRRAEQESELGQSPEGAAERGREDPVLLEQRLQDATEEps 441
Cdd:TIGR02168 406 EARLERleDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERE-- 483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 442 LESGGIGPSSMREGERREQRVGPSLQPELAENHRCHLTA------------WTSSLEA----QQQAGLVETQESEGEQRE 505
Cdd:TIGR02168 484 LAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILgvlselisvdegYEAAIEAalggRLQAVVVENLNAAKKAIA 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 506 GLSEGPGQELTQVPVPCAQGTALKVDTEVVARG----LGLEAEHRLKLLLLQTELKEEM------DVLKLENRNLHEKLQ 575
Cdd:TIGR02168 564 FLKQNELGRVTFLPLDSIKGTEIQGNDREILKNiegfLGVAKDLVKFDPKLRKALSYLLggvlvvDDLDNALELAKKLRP 643
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 576 HEVCLKEDLERV------------KHSLVEDHREELKKANERLQLVKQELKDKEAEWKVAsedlkRKAEEELTLMLHDLK 643
Cdd:TIGR02168 644 GYRIVTLDGDLVrpggvitggsakTNSSILERRREIEELEEKIEELEEKIAELEKALAEL-----RKELEELEEELEQLR 718
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 644 EQAEAEKQSV------INKFELREIKMRQLQDQQAAQILDLEGSLVEQQGRLRQLEHGLEAEECPRcghcgQEPAGRVAP 717
Cdd:TIGR02168 719 KELEELSRQIsalrkdLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEI-----EELEAQIEQ 793
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 718 ADQDWELATRRLRE-DCALQLMQAQSRFLKERKELTEKFTAEQDALLQEAQEKHAcDMRLLQERHQQHVLSLTAQLEARR 796
Cdd:TIGR02168 794 LKEELKALREALDElRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIE-ELSEDIESLAAEIEELEELIEELE 872
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1953366515 797 RaEVEELKASVESERWALAEARvaELQTEHAAAISALEARHSALLGSLEsrhlsEVQAMREEHRQALEQLRVDLEKQLQ 875
Cdd:TIGR02168 873 S-ELEALLNERASLEEALALLR--SELEELSEELRELESKRSELRRELE-----ELREKLAQLELRLEGLEVRIDNLQE 943
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
2432-2904 |
7.45e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 45.55 E-value: 7.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2432 EFLQAVQEAFGKEREMlRAELQPRPcgsapGEHSSLLERLEKVVQEQEKSLEHLRaSDRSSLLSEIQALRAQLRmthlQN 2511
Cdd:pfam01576 47 EQLQAETELCAEAEEM-RARLAARK-----QELEEILHELESRLEEEEERSQQLQ-NEKKKMQQHIQDLEEQLD----EE 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2512 QEKLQQLCAALTSAEARGSRQEHQL----RRQVELLAYKVEQEKRIaSDVQKTLTEEQEKASSVRKLLVVEQTVVRDLRS 2587
Cdd:pfam01576 116 EAARQKLQLEKVTTEAKIKKLEEDIllleDQNSKLSKERKLLEERI-SEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEE 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2588 ELRECKQDNERLLAS--------------LGEAQKEVLQLRSVLDSKESNLRAALQELESERGKERALQSRLEE--AQLQ 2651
Cdd:pfam01576 195 RLKKEEKGRQELEKAkrklegestdlqeqIAELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIREleAQIS 274
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2652 HLQREGQSSKTleeLRASLEKQFAQSSQLCVALKHEqtakdnLQKELQIEASRCEaLLAQERGQLSELQRSLEAEKGRSL 2731
Cdd:pfam01576 275 ELQEDLESERA---ARNKAEKQRRDLGEELEALKTE------LEDTLDTTAAQQE-LRSKREQEVTELKKALEEETRSHE 344
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2732 ELAAALRHERL-----LTEQLSRGPRESPAHHALLRKLKEEKsraAELQARLEQVQrQQEADVQKRRAELEREKEVRAAQ 2806
Cdd:pfam01576 345 AQLQEMRQKHTqaleeLTEQLEQAKRNKANLEKAKQALESEN---AELQAELRTLQ-QAKQDSEHKRKKLEGQLQELQAR 420
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2807 AREPGRC-LRREGHASQQQAGLEPLQAGLAAQEGRKDARRADVgpgrADAEMRPTGAKEKLRELELQRQRDEHKIRQLQR 2885
Cdd:pfam01576 421 LSESERQrAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDV----SSLESQLQDTQELLQEETRQKLNLSTRLRQLED 496
|
490 500
....*....|....*....|.
gi 1953366515 2886 TVQALEAK--EEAAQRPEAER 2904
Cdd:pfam01576 497 ERNSLQEQleEEEEAKRNVER 517
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
224-635 |
7.49e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.42 E-value: 7.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 224 KLQSEMER--NAR-AVESLKRDWESErglcLENLRRELSAKHRSELENLQDQFKRELSEQKAELEKIFQAKNQAECALRT 300
Cdd:PRK02224 163 KLEEYRERasDARlGVERVLSDQRGS----LDQLKAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDE 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 301 LE---AQHEEALRQLrEDLQSErcqyVQDLELRLRDQEVEKQL---ELESLRASYAELkaqsQEEIRRLWSQLESPRPDR 374
Cdd:PRK02224 239 ADevlEEHEERREEL-ETLEAE----IEDLRETIAETEREREElaeEVRDLRERLEEL----EEERDDLLAEAGLDDADA 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 375 QDASAR----TPHGEELEQRERECGVQQQRRGRRAEQESELGQSPEGAAERGREDPVLLEQRLQDATEEPSLESGGIGPS 450
Cdd:PRK02224 310 EAVEARreelEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEEL 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 451 SMREGERREQRVGPSLQPELAENHRCHLTAWTSSL---EAQQQAGLVETQESEGEQREGLSEGP----GQELTQVPVPCa 523
Cdd:PRK02224 390 EEEIEELRERFGDAPVDLGNAEDFLEELREERDELrerEAELEATLRTARERVEEAEALLEAGKcpecGQPVEGSPHVE- 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 524 qgtALKVDTEVVARGLGLEAEHRLKLLLLQTELKEEMDVLKLENRnlHEKLQHEVCLKEDLERVKHSLVEDHREELKKAN 603
Cdd:PRK02224 469 ---TIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDR--IERLEERREDLEELIAERRETIEEKRERAEELR 543
|
410 420 430
....*....|....*....|....*....|..
gi 1953366515 604 ERlqlvKQELKDKEAEWKVASEDLKRKAEEEL 635
Cdd:PRK02224 544 ER----AAELEAEAEEKREAAAEAEEEAEEAR 571
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
2459-2910 |
7.87e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 45.49 E-value: 7.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2459 SAPGEHSSLLERLEkVVQEQEKSLEHLRASDRSSLLSEIQALRAQLRMTHLQNQEKLQQLCAALTSA-----EARGSRQE 2533
Cdd:pfam15921 289 SARSQANSIQSQLE-IIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLAnseltEARTERDQ 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2534 H-----QLRRQVE-LLA--YKVEQEKRIASDVQKTLTEEQEKAS----SVRKLLVVEQTVVRDLRSELR----ECKQDNE 2597
Cdd:pfam15921 368 FsqesgNLDDQLQkLLAdlHKREKELSLEKEQNKRLWDRDTGNSitidHLRRELDDRNMEVQRLEALLKamksECQGQME 447
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2598 RLLASL---GEAQKEVLQLRSVLDSKESNLRAALQEL--------ESERG----------KERA----------LQSR-- 2644
Cdd:pfam15921 448 RQMAAIqgkNESLEKVSSLTAQLESTKEMLRKVVEELtakkmtleSSERTvsdltaslqeKERAieatnaeitkLRSRvd 527
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2645 LEEAQLQHLQREGQSSKTLEELRASLEKQFAQSSQLCVALKHEQTAKDNLQKE-------LQIEASRCEALLAQERGQLS 2717
Cdd:pfam15921 528 LKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQhgrtagaMQVEKAQLEKEINDRRLELQ 607
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2718 ELQRSLEAEKGRSLELAAALRHERLLTEQLSRGPRE--------SPAHHALLRKLKEEKSRAAELQARLEQVQR------ 2783
Cdd:pfam15921 608 EFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSErlravkdiKQERDQLLNEVKTSRNELNSLSEDYEVLKRnfrnks 687
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2784 -QQEADVQKRRAELeREKEVRAAQAREPGRCLR-REGHASQQQAGlepLQAGLAAQEGRKDARRADVgpgRADAEMRPTG 2861
Cdd:pfam15921 688 eEMETTTNKLKMQL-KSAQSELEQTRNTLKSMEgSDGHAMKVAMG---MQKQITAKRGQIDALQSKI---QFLEEAMTNA 760
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|.
gi 1953366515 2862 AKEK--LRElelqrqrDEHKIRQLQRTVQAleAKEEAAQRPEAERLQEERL 2910
Cdd:pfam15921 761 NKEKhfLKE-------EKNKLSQELSTVAT--EKNKMAGELEVLRSQERRL 802
|
|
| Macoilin |
pfam09726 |
Macoilin family; The Macoilin proteins has an N-terminal portion that is composed of 5 ... |
1353-1611 |
8.44e-04 |
|
Macoilin family; The Macoilin proteins has an N-terminal portion that is composed of 5 trasnmembrane helices, followed by a C-terminal coiled-coil region. Macoilin is a highly conserved protein present in eukaryotes. Macoilin appears to be found in the ER and be involved in the function of neurons.
Pssm-ID: 462859 [Multi-domain] Cd Length: 670 Bit Score: 45.23 E-value: 8.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1353 DSALRREVECLTQEQSEARKQsekdraalLSQMKVFEAELEEQLsrHEAC-AKQAEelsalRQQMAALDKHLRSQRQfmD 1431
Cdd:pfam09726 418 EQELRSQISSLTSLERSLKSE--------LGQLRQENDLLQTKL--HNAVsAKQKD-----KQTVQQLEKRLKAEQE--A 480
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1432 EQAVEREHEREefqREIQRLEEQLRQAARPRPHGPRVsdeeqldEEVELLQEKLREKsdgfnELVIKKelADRQVMIQEE 1511
Cdd:pfam09726 481 RASAEKQLAEE---KKRKKEEEATAARAVALAAASRG-------ECTESLKQRKREL-----ESEIKK--LTHDIKLKEE 543
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1512 EIRRLEEtnascrrEAAQLREELERQRDA---MKALQ--QDKEALQEKQMSnlllvSTLQSKLDegrcpvppADSCPEGP 1586
Cdd:pfam09726 544 QIRELEI-------KVQELRKYKESEKDTevlMSALSamQDKNQHLENSLS-----AETRIKLD--------LFSALGDA 603
|
250 260
....*....|....*....|....*
gi 1953366515 1587 EVQLEAVQRALQQRESEVLDLKEQL 1611
Cdd:pfam09726 604 KRQLEIAQGQIYQKDQEIKDLKQKI 628
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
2471-2745 |
9.91e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.01 E-value: 9.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2471 LEKVVQEQEKSLEHLRasdrsSLLSEIQALRAQLRMTHLQNQEKLQQLcaaltsaeaRGSRQEHQ-LRRQVELLAYKVEQ 2549
Cdd:TIGR04523 372 IEKLKKENQSYKQEIK-----NLESQINDLESKIQNQEKLNQQKDEQI---------KKLQQEKElLEKEIERLKETIIK 437
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2550 EKRIASDVQKTLTEEQEKASSVRKLLVVEQTVVRDLRSELRECKQDNERLLASLGEAQKEVLQLRSVLDSKESNLRAALQ 2629
Cdd:TIGR04523 438 NNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTK 517
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2630 ELESERGKERALQSRLEEAQLQHLQREGQSSKTLEEL-RASLEKQFAQSSQLCVALKHEQTAKDNLQKELQIEASRCEAL 2708
Cdd:TIGR04523 518 KISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELkKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKE 597
|
250 260 270
....*....|....*....|....*....|....*..
gi 1953366515 2709 LAQERGQLSELQRSLEaEKGRSLELAAAlRHERLLTE 2745
Cdd:TIGR04523 598 KKDLIKEIEEKEKKIS-SLEKELEKAKK-ENEKLSSI 632
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
2463-2907 |
1.01e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.03 E-value: 1.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2463 EHSSLLERLEKVVQEQEKSLEHLRA--SDRSSLLSEIQALRAQLRMTHLQNQEKLQQLCAALTSAEARGSRQEHQLRRQV 2540
Cdd:PRK02224 245 EHEERREELETLEAEIEDLRETIAEteREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDE 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2541 ELLAYKVEQEKRI-------------ASDVQKTLTEEQEKASSVRKLLVVEQTVVRDLRSELRECKQDNERLLASLGEAQ 2607
Cdd:PRK02224 325 ELRDRLEECRVAAqahneeaeslredADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAP 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2608 KEVLQLRSVLDSKESNLRAALQELESERGKERALQSRLEEAqlQHLQREG----------------------QSSKTLEE 2665
Cdd:PRK02224 405 VDLGNAEDFLEELREERDELREREAELEATLRTARERVEEA--EALLEAGkcpecgqpvegsphvetieedrERVEELEA 482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2666 LRASLEKQFAQSSQLCVALKHEQTAKDNLQKeLQIEASRCEALLAQERGQLSELQRSLEAEKGRSLEL-AAALRHERLLT 2744
Cdd:PRK02224 483 ELEDLEEEVEEVEERLERAEDLVEAEDRIER-LEERREDLEELIAERRETIEEKRERAEELRERAAELeAEAEEKREAAA 561
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2745 EQLSRGPRESPAHHALLRKLKEEKSR------AAELQARLEQVQRQQEADVQKR--RAELEREKEVRAAQAREPGRCLR- 2815
Cdd:PRK02224 562 EAEEEAEEAREEVAELNSKLAELKERieslerIRTLLAAIADAEDEIERLREKReaLAELNDERRERLAEKRERKRELEa 641
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2816 --REGHASQQQAGLEPLQAGLAAQEGRKDARRADvgpgRADAEMRPTGAKEKLRELElqRQRDEHKirQLQRTVQALEAK 2893
Cdd:PRK02224 642 efDEARIEEAREDKERAEEYLEQVEEKLDELREE----RDDLQAEIGAVENELEELE--ELRERRE--ALENRVEALEAL 713
|
490
....*....|....
gi 1953366515 2894 EEaaqrpEAERLQE 2907
Cdd:PRK02224 714 YD-----EAEELES 722
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
184-877 |
1.15e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.96 E-value: 1.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 184 ELALLRSRQQQELELAREQHAREQEEMRLRCSQETAKLKEKLQSEMERNARAVESLKRDWESErglclENLRRELsakhr 263
Cdd:TIGR00618 180 QLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSH-----AYLTQKR----- 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 264 sELENLQDQFKRELSEQKAELEKifqaknqaecaLRTLEAQHEEALRQLREDLQSERCQYVQDLELRLRDQEVEKQLELE 343
Cdd:TIGR00618 250 -EAQEEQLKKQQLLKQLRARIEE-----------LRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQ 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 344 SLRASYAELKAQSQEeirrlwSQLESPRPDRQDASARTPHGEELEQReRECGVQQQRRGRRAEQESELgqSPEGAAERGR 423
Cdd:TIGR00618 318 SKMRSRAKLLMKRAA------HVKQQSSIEEQRRLLQTLHSQEIHIR-DAHEVATSIREISCQQHTLT--QHIHTLQQQK 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 424 EDPVLLEQRLQDATEEPSLESGGIGPSSMREGERREQRVGPSLQPELAENHRCHLTAWTSSLEAQQQAGLVETQESEGEQ 503
Cdd:TIGR00618 389 TTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSL 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 504 REGLsegpgQELTQVPVPCAQGTALKvdTEVVARGLGLEAEHRLKLLLLQTELKEEMDVLKLE--NRNLHEKLQHEVCLK 581
Cdd:TIGR00618 469 KERE-----QQLQTKEQIHLQETRKK--AVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGplTRRMQRGEQTYAQLE 541
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 582 EDLERVKHSLVEDhREELKKANERLQLVKQELKDKEAEWKVASEDLKrKAEEELTLMLHDLKEQAEAEKQsvinKFELRE 661
Cdd:TIGR00618 542 TSEEDVYHQLTSE-RKQRASLKEQMQEIQQSFSILTQCDNRSKEDIP-NLQNITVRLQDLTEKLSEAEDM----LACEQH 615
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 662 IKMRQLQDQQAAQILDLEGSLVEQqgRLRQLEHGLEAEEcprcghcgqepagrVAPADQDWELATRRLREDCALQLMQAQ 741
Cdd:TIGR00618 616 ALLRKLQPEQDLQDVRLHLQQCSQ--ELALKLTALHALQ--------------LTLTQERVREHALSIRVLPKELLASRQ 679
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 742 SRFLKERKELTE----KFTAEQDALLQEAQEKHACDMRLLQERHQQHVLSLTAQLEARRRAEVEELKASVESERWALAEA 817
Cdd:TIGR00618 680 LALQKMQSEKEQltywKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKAR 759
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 818 RVAELQTEHAAAIsalearhsALLGSLESRHLSEVQAMREEHRQALEQLRVDLEKQLQEK 877
Cdd:TIGR00618 760 TEAHFNNNEEVTA--------ALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQE 811
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1644-1877 |
1.20e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 1.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1644 RELQEENASLKAFLQNKEKEIMCVSEQLEAQLAGMGsgALREVTYDRSSEIEELRSIIENLRENQQRLQKEKAEEMEQLH 1723
Cdd:COG4942 30 EQLQQEIAELEKELAALKKEEKALLKQLAALERRIA--ALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1724 EVIERLQEELSLGAPAVPAAVDcelpavpapavGPEALAAAGAASRLFAEQEHRHGQALEALQQRLQAAEEAAAGQLAEL 1803
Cdd:COG4942 108 ELLRALYRLGRQPPLALLLSPE-----------DFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1953366515 1804 ERSAALREAEVQAMASQIQAFEAALRAKEARLAERDLEIDAMKRQKLAHSAELETILAAFSRFRRTLERQPLAA 1877
Cdd:COG4942 177 EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAA 250
|
|
| PLN03229 |
PLN03229 |
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional |
1352-1629 |
1.38e-03 |
|
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Pssm-ID: 178768 [Multi-domain] Cd Length: 762 Bit Score: 44.46 E-value: 1.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1352 EDSALRREVECLTQEQSEARKQSEKDRAALLSQM-KVFEAELEEQLSRHEACAKQAEELSALRQQMAALDkhlrSQRQFM 1430
Cdd:PLN03229 430 PVRELEGEVEKLKEQILKAKESSSKPSELALNEMiEKLKKEIDLEYTEAVIAMGLQERLENLREEFSKAN----SQDQLM 505
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1431 DEQAVER-EHEREEFQREIQRLE---------EQLRQAARPRPHGPRVSDEEQLDEEVE------LLQEKLREKSDGFNE 1494
Cdd:PLN03229 506 HPVLMEKiEKLKDEFNKRLSRAPnylslkyklDMLNEFSRAKALSEKKSKAEKLKAEINkkfkevMDRPEIKEKMEALKA 585
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1495 LVIKKELADRQVMiQEEEIRRLEETNASCRREAAQLREELERQRDAMKA-------------LQQDKEALQE---KQMSN 1558
Cdd:PLN03229 586 EVASSGASSGDEL-DDDLKEKVEKMKKEIELELAGVLKSMGLEVIGVTKknkdtaeqtpppnLQEKIESLNEeinKKIER 664
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1953366515 1559 LLLVSTLQSKLDEGRCPVPPADSCPEGPEVQ-LEAVQRALQQRESEVLD---LKEQLGKMKDDLVSKSDEVLHLN 1629
Cdd:PLN03229 665 VIRSSDLKSKIELLKLEVAKASKTPDVTEKEkIEALEQQIKQKIAEALNsseLKEKFEELEAELAAARETAAESN 739
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
2439-2671 |
1.41e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 44.75 E-value: 1.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2439 EAFGKEREMLRAELQPRpcgsAPGEHSSLLERLEKVVQEQEKSLEHLRASDRSSLLSEIQALR----AQLRMTHLQNQEK 2514
Cdd:PTZ00121 1555 EELKKAEEKKKAEEAKK----AEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKkaeeAKIKAEELKKAEE 1630
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2515 LQQLCAALTSAEARGSRQEHQLRRQVELLAYKVEQEKRIASdvqktltEEQEKASSVRKLLVVEQTVVRDLRSELREcKQ 2594
Cdd:PTZ00121 1631 EKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAE-------EDKKKAEEAKKAEEDEKKAAEALKKEAEE-AK 1702
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2595 DNERLLASLGEAQKEVLQLRSvlDSKESNLRAALQELESERGKERALQSRLEEAQ---LQHLQREGQssKTLEELRASLE 2671
Cdd:PTZ00121 1703 KAEELKKKEAEEKKKAEELKK--AEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEkkkIAHLKKEEE--KKAEEIRKEKE 1778
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
164-700 |
1.47e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 44.28 E-value: 1.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 164 KEKETALTELRAMLNG--RHAQELALLRSR--QQQELELAREQHAREQEEmRLRCSQETAKLKEKLQSEMERNARAVESL 239
Cdd:PRK03918 210 NEISSELPELREELEKleKEVKELEELKEEieELEKELESLEGSKRKLEE-KIRELEERIEELKKEIEELEEKVKELKEL 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 240 KrdWESERGLCLENLRRELS----------AKHRSELENLQDQFKrELSEQKAELEKIFQAKNQAECALRTLEAQHE--E 307
Cdd:PRK03918 289 K--EKAEEYIKLSEFYEEYLdelreiekrlSRLEEEINGIEERIK-ELEEKEERLEELKKKLKELEKRLEELEERHElyE 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 308 ALRQLREDLQSercqyvqdLELRLRDQEVEK-QLELESLRASYAELKaQSQEEIRRLWSQLESPRPDRQDASartphgEE 386
Cdd:PRK03918 366 EAKAKKEELER--------LKKRLTGLTPEKlEKELEELEKAKEEIE-EEISKITARIGELKKEIKELKKAI------EE 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 387 LEQRERECGVQqqrrGRRAEQESELGQSPEGAAERGRedpvlLEQRLQDATEEpslesggigpssMREGERREQRVGPSL 466
Cdd:PRK03918 431 LKKAKGKCPVC----GRELTEEHRKELLEEYTAELKR-----IEKELKEIEEK------------ERKLRKELRELEKVL 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 467 --QPELAENHRchLTAWTSSLEAQQQAGLVETQESEGEQREGLSEgpgqeltqvpvpcaqgTALKVDTEVvaRGLGLEAE 544
Cdd:PRK03918 490 kkESELIKLKE--LAEQLKELEEKLKKYNLEELEKKAEEYEKLKE----------------KLIKLKGEI--KSLKKELE 549
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 545 HRLKLLLLQTELKEEMDVLKLENRNLHEKLQHE--VCLKEDLERVKhSLVEDHRE--ELKKANERLQLVKQELKDKEAEW 620
Cdd:PRK03918 550 KLEELKKKLAELEKKLDELEEELAELLKELEELgfESVEELEERLK-ELEPFYNEylELKDAEKELEREEKELKKLEEEL 628
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 621 KVASEDLKR--KAEEELTlmlhdlKEQAEAEKQSVINKFELREIKMRQLQDQQA---AQILDLEGSLVEQQGRLRQLEHG 695
Cdd:PRK03918 629 DKAFEELAEteKRLEELR------KELEELEKKYSEEEYEELREEYLELSRELAglrAELEELEKRREEIKKTLEKLKEE 702
|
....*
gi 1953366515 696 LEAEE 700
Cdd:PRK03918 703 LEERE 707
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2697-2981 |
1.54e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 44.66 E-value: 1.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2697 ELQIEASRCEALLAQERGQLSELQRSLEAEKGRSLELAAALRHERLLTEQLSRGPRESPAHHALLRK----LKEEKSRAA 2772
Cdd:TIGR02168 674 ERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAeveqLEERIAQLS 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2773 ELQARLEQVQRQQEADVQKRRAELEREKEVRAAQARepgrclRREGHASQQQAGLEPLQAgLAAQEGRKDARRADVGPGR 2852
Cdd:TIGR02168 754 KELTELEAEIEELEERLEEAEEELAEAEAEIEELEA------QIEQLKEELKALREALDE-LRAELTLLNEEAANLRERL 826
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2853 ADAEMRPTGAKEKLRELELQRQRDEHKIRQLQRTVQALEAKEEAAQRpEAERLQEERLGLERVRQQLLCAAglltsfisR 2932
Cdd:TIGR02168 827 ESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELES-ELEALLNERASLEEALALLRSEL--------E 897
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 1953366515 2933 TVDRTISDWtssnEKAVTSLLHTLEELKSELSTPSSSQKKMTAELQTQL 2981
Cdd:TIGR02168 898 ELSEELREL----ESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQ 942
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
2577-2907 |
1.60e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 44.58 E-value: 1.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2577 VEQTVVRDLRSELRECKQDNERLLASLGEAQKEVLQLRSVLDSKESNLRAALQELESERGKERALQSRLEE---AQLQHL 2653
Cdd:pfam02463 153 ERRLEIEEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEeylLYLDYL 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2654 QREGQSSKTLEELRASLEKQFAQSSQLCVALKHEQTAKDNLQKElqieasrceallaqergqLSELQRSLEAEKGRSLEL 2733
Cdd:pfam02463 233 KLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKE------------------EEKEKKLQEEELKLLAKE 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2734 AAALRHERLLTEQLsrgprespaHHALLRKLKEEKSRAAELQARLEQVQRQQEAdvqkRRAELEREKEVRAAQAREPGRC 2813
Cdd:pfam02463 295 EEELKSELLKLERR---------KVDDEEKLKESEKEKKKAEKELKKEKEEIEE----LEKELKELEIKREAEEEEEEEL 361
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2814 LRREGHASQQQAGLEPLQAGLAAQEGRKDARRadvgpgradaemrptGAKEKLRELELQRQRDEHKIRQLQRTVQALEAK 2893
Cdd:pfam02463 362 EKLQEKLEQLEEELLAKKKLESERLSSAAKLK---------------EEELELKSEEEKEAQLLLELARQLEDLLKEEKK 426
|
330
....*....|....
gi 1953366515 2894 EEAAQRPEAERLQE 2907
Cdd:pfam02463 427 EELEILEEEEESIE 440
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
2820-3016 |
1.63e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.60 E-value: 1.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2820 ASQQQAGLEPLQAGLAAQEGRKD---ARRADVGPGRADAEMRPTGAKEKLRELELQRQRDEHKIRQLQRTVQALEAKEEA 2896
Cdd:COG4942 22 AAEAEAELEQLQQEIAELEKELAalkKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEA 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2897 AQRPEAERLQE-ERLGLERVRQQLLCAAGLLTSFISRTVDRTISDWTSSNEKAVTSLLHTLEELKSELSTPSSSQKKMTA 2975
Cdd:COG4942 102 QKEELAELLRAlYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLA 181
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1953366515 2976 ELQTQLVDvLLKDNDSLTKALRTVTQEKAELCRAVSQLEKS 3016
Cdd:COG4942 182 ELEEERAA-LEALKAERQKLLARLEKELAELAAELAELQQE 221
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1248-1735 |
2.09e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.19 E-value: 2.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1248 QQLLERLEEENAARTRLMLELHQAQGIIEGFKEEKASLQEALCRQETAEHGLAEELEGLRQQLQQAAQQQAELKEENSAL 1327
Cdd:TIGR00618 180 QLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQ 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1328 WSQKEASAAEAEAREAGTPAPIAHEDSALRREVECLTQEQsEARKQSEKDRAALLSQMKVFEAELEEQLSRHEACAKQAE 1407
Cdd:TIGR00618 260 QLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHI-KAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQS 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1408 ELSALRQQMAALDKHLRSQRQFMDEQAVEREHEREE---------FQREIQRLEEQLRQAArprphgprvSDEEQLDEEV 1478
Cdd:TIGR00618 339 SIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQhtltqhihtLQQQKTTLTQKLQSLC---------KELDILQREQ 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1479 ELLQEKLREksdgFNELVIKKELADRQVMIQEEEIRRLE---ETNASCRREAAQLREELERQRDAMKALQQDKEALQEKQ 1555
Cdd:TIGR00618 410 ATIDTRTSA----FRDLQGQLAHAKKQQELQQRYAELCAaaiTCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQE 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1556 MSNLLLVSTLQSKLDEGRCPVPPADSCPEgPEVQLEAVQRALQQRESEVLDLKEQLGKMKDDLVSKSDEVLHLNLELDAQ 1635
Cdd:TIGR00618 486 TRKKAVVLARLLELQEEPCPLCGSCIHPN-PARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQ 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1636 SSRAAVSVRELQEENASLKAFLQNKEKEIMCVSEQLEAQLAG--MGSGALREVTYDRSSEIEELRsIIENLRENQQRLQK 1713
Cdd:TIGR00618 565 MQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAedMLACEQHALLRKLQPEQDLQD-VRLHLQQCSQELAL 643
|
490 500
....*....|....*....|..
gi 1953366515 1714 EKAEEMEQLHEVIERLQEELSL 1735
Cdd:TIGR00618 644 KLTALHALQLTLTQERVREHAL 665
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
251-319 |
2.20e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 43.66 E-value: 2.20e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1953366515 251 LENLRRELSAKHRsELENL---QDQFKRELSEQKAELEKIFQ-----AKNQAECALRTLEAQHEEALRQLREDLQSE 319
Cdd:PRK00409 525 LEELERELEQKAE-EAEALlkeAEKLKEELEEKKEKLQEEEDklleeAEKEAQQAIKEAKKEADEIIKELRQLQKGG 600
|
|
| PRK10361 |
PRK10361 |
DNA recombination protein RmuC; Provisional |
1370-1535 |
2.26e-03 |
|
DNA recombination protein RmuC; Provisional
Pssm-ID: 182409 [Multi-domain] Cd Length: 475 Bit Score: 43.43 E-value: 2.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1370 ARKQSEKDRAALLSQMKVFEAEL---EEQLSRHEACAKQAE----ELSALRQQMAALDKHLRSQRQFMDEQAVEREHERE 1442
Cdd:PRK10361 23 ASYQHAQQKAEQLAEREEMVAELsaaKQQITQSEHWRAECEllnnEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIR 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1443 EFQREIQRLEEQLRQAA-RPRPHGPRVSDeEQLDEEVELLQEKLREKSDGFNELV---IKKELADRQVMIQeeEIRRLEE 1518
Cdd:PRK10361 103 QMINSEQRLSEQFENLAnRIFEHSNRRVD-EQNRQSLNSLLSPLREQLDGFRRQVqdsFGKEAQERHTLAH--EIRNLQQ 179
|
170
....*....|....*..
gi 1953366515 1519 TNASCRREAAQLREELE 1535
Cdd:PRK10361 180 LNAQMAQEAINLTRALK 196
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1441-1621 |
2.43e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 2.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1441 REEFQREIQRLEEQLRQAARprphgprvsDEEQLDEEVELLQEKLR--EKSDGFNELVIKKELADRQVMIQEEEIRRLEE 1518
Cdd:COG4913 612 LAALEAELAELEEELAEAEE---------RLEALEAELDALQERREalQRLAEYSWDEIDVASAEREIAELEAELERLDA 682
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1519 TN----------ASCRREAAQLREELERQRDAMKALQQDKEALQEkqmsnllLVSTLQSKLDEgrcpvpPADSCPEGPEV 1588
Cdd:COG4913 683 SSddlaaleeqlEELEAELEELEEELDELKGEIGRLEKELEQAEE-------ELDELQDRLEA------AEDLARLELRA 749
|
170 180 190
....*....|....*....|....*....|...
gi 1953366515 1589 QLEAVQRALQQRESEvLDLKEQLGKMKDDLVSK 1621
Cdd:COG4913 750 LLEERFAAALGDAVE-RELRENLEERIDALRAR 781
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2463-2801 |
2.45e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.77 E-value: 2.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2463 EHSSLLERLEKVVQEQEKSLEHLRASDRSSLLSEIQALRAQLRMTHLQNQEKLQQLCAALTSAEARGSRQEHQLRRQVEL 2542
Cdd:COG1196 443 ALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGL 522
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2543 -----------LAYKVEQEKRIASDVQKTLTEEQEKASSVRKLLVVEQTVVRDLRSELRECKQDNERLLASLGEAQKEVL 2611
Cdd:COG1196 523 agavavligveAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVD 602
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2612 QLRSVLDSKESNLRAALQELESERGKERALQSRLEEAQLQHLQREGQSSKTLEELRASLEKQFAQSSQLCVALKHEQTAK 2691
Cdd:COG1196 603 LVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELE 682
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2692 DNLQKELQIEASRCEALLAQERGQLSELQRSLEAEKGRSLELAAALRHERLLTEQLSRGPRESPAHHALLRKLKEEKSRA 2771
Cdd:COG1196 683 ELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDL 762
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 1953366515 2772 AELQARLEQVQRQQEA-------------DVQKRRAELEREKE 2801
Cdd:COG1196 763 EELERELERLEREIEAlgpvnllaieeyeELEERYDFLSEQRE 805
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1217-1553 |
2.48e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.90 E-value: 2.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1217 RQLEEARQIHSRFEKefsCKNEETAQVVRKQQQLLERLEEenaARTRLMLELHQAQGIIEGFKEEKASLQEAL------- 1289
Cdd:PRK03918 362 ELYEEAKAKKEELER---LKKRLTGLTPEKLEKELEELEK---AKEEIEEEISKITARIGELKKEIKELKKAIeelkkak 435
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1290 -----CRQETAEHGLAEELEGLRQQLQQAAQQQAELKEENSALWSQKEASAAEAEareagtpapiahEDSALRREVECLT 1364
Cdd:PRK03918 436 gkcpvCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLK------------KESELIKLKELAE 503
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1365 QEQSEARKQSEKDRAALLSQMKVFEaELEEQL----SRHEACAKQAEELSALRQQMAALDKHLRSQRQFMDEqaVEREHE 1440
Cdd:PRK03918 504 QLKELEEKLKKYNLEELEKKAEEYE-KLKEKLiklkGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAE--LLKELE 580
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1441 R------EEFQREIQRLEEQLRQAARPRPhgpRVSDEEQLDEEVELLQEKLREKSDGFNELV-----IKKELADRQVMIQ 1509
Cdd:PRK03918 581 ElgfesvEELEERLKELEPFYNEYLELKD---AEKELEREEKELKKLEEELDKAFEELAETEkrleeLRKELEELEKKYS 657
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 1953366515 1510 EEEIRRLEETNASCRREAAQLREELERQRDAMKALQQDKEALQE 1553
Cdd:PRK03918 658 EEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKE 701
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1252-1466 |
2.49e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.21 E-value: 2.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1252 ERLEEENAARTRLMLELHQAQGIIEGFKEEKASLQEALCRQETAEHGLAEELEGLRQQLQQAAQQQAELKEENSALWSQK 1331
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1332 EASAAEAEAR--------EAGTPAPIAHEDSALR-----REVECLTQEQSEARKQSEKDRAALLSQMKVFEAELEEQLSR 1398
Cdd:COG4942 100 EAQKEELAELlralyrlgRQPPLALLLSPEDFLDavrrlQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1953366515 1399 HEACAKQAEELSALRQQMAALDKHLRSQRQFMDEQAVEREHEREEFQREIQRLEEQLRQAARPRPHGP 1466
Cdd:COG4942 180 LAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAG 247
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1689-1960 |
3.03e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.39 E-value: 3.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1689 DRSSEIEELRSIIENLRENQQRLQKEKAE---EMEQLHEVIERLQEELSlgapavpaavdcelpavpapAVGPEALAAAG 1765
Cdd:COG1196 236 ELEAELEELEAELEELEAELEELEAELAEleaELEELRLELEELELELE--------------------EAQAEEYELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1766 AASRLFAEQEHRHG--QALEALQQRLQAAEEAAAGQLAELERSAALREAEVQAMASQIQAFEAALRAKEARLAERDLEID 1843
Cdd:COG1196 296 ELARLEQDIARLEErrRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELA 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1844 AMKRQKLAHSAELETILAAFSRFRRTLERQPLAAEDEPPELQRLRVQCVRLSRQLQVLNQRFLRCQKEADKQQARGARLR 1923
Cdd:COG1196 376 EAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELE 455
|
250 260 270
....*....|....*....|....*....|....*..
gi 1953366515 1924 pRGARGLQGPGPRAEEASRDEASQQDVDSRQVASATQ 1960
Cdd:COG1196 456 -EEEEALLELLAELLEEAALLEAALAELLEELAEAAA 491
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
2593-2852 |
3.22e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 3.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2593 KQDNERLLASLGEAQKEVLQLRSVLDSKESNLRAALQELESERGKERALQSRLEEAQLQHLQREGQSSKTLEELRASLEK 2672
Cdd:COG4942 22 AAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEA 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2673 QFAQSSQLCVALkheqtAKDNLQKELQIEASRCEALLAQERGQLseLQRSLEAEKGRSLELAAALRHERLLTEQLSrgpr 2752
Cdd:COG4942 102 QKEELAELLRAL-----YRLGRQPPLALLLSPEDFLDAVRRLQY--LKYLAPARREQAEELRADLAELAALRAELE---- 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2753 espahhALLRKLKEEKSRAAELQARLEQVQRQQEADVQKRRAELEREKEVRAAQAREpgrclrreghASQQQAGLEPLQA 2832
Cdd:COG4942 171 ------AERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQE----------AEELEALIARLEA 234
|
250 260
....*....|....*....|
gi 1953366515 2833 GLAAQEGRKDARRADVGPGR 2852
Cdd:COG4942 235 EAAAAAERTPAAGFAALKGK 254
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
1407-1732 |
3.46e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 42.96 E-value: 3.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1407 EELSALRQQMAALDKHLRSQRQFMDEQAVEREHEREEFQREIQRLEEQLRQaarprphgprvsdeeqLDEEVELLQEKLR 1486
Cdd:pfam07888 41 QERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQ----------------SREKHEELEEKYK 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1487 EKSDGFNELVIKKELADRQVMIQEEEIRRLEETNASCRREAAQLREELERQRD-AMKALQQDKEALQEKQmsnlllvsTL 1565
Cdd:pfam07888 105 ELSASSEELSEEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKErAKKAGAQRKEEEAERK--------QL 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1566 QSKLDEGRcpvppADSCPEGPEVQleAVQRALQQRESEVLDLKEQLGKMKDDLVSKSDEVLHLNL---------ELDAQS 1636
Cdd:pfam07888 177 QAKLQQTE-----EELRSLSKEFQ--ELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAENEAlleelrslqERLNAS 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1637 SRAAVSVRELQEENASLKAFLQNKEKEIMCVSEQLEAQLAGMgSGALREvtyDRSSEIEELRSIIENLRENQQRLQKEKA 1716
Cdd:pfam07888 250 ERKVEGLGEELSSMAAQRDRTQAELHQARLQAAQLTLQLADA-SLALRE---GRARWAQERETLQQSAEADKDRIEKLSA 325
|
330
....*....|....*.
gi 1953366515 1717 EemeqLHEVIERLQEE 1732
Cdd:pfam07888 326 E----LQRLEERLQEE 337
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
2755-2914 |
3.56e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 3.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2755 PAHHALLRKLKEEKSRAAELQARLEQVQRQQEADVQKRRAELERE-------KEVRAAQAREPGRCLRREGHASQQQAG- 2826
Cdd:COG4913 258 RELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAelarleaELERLEARLDALREELDELEAQIRGNGg 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2827 --LEPLQAGLAAQEGRKDARRADVGpgRADAEMRPTGAKEKLRELELQRQRDEHK---------IRQLQRTVQALEAKEE 2895
Cdd:COG4913 338 drLEQLEREIERLERELEERERRRA--RLEALLAALGLPLPASAEEFAALRAEAAallealeeeLEALEEALAEAEAALR 415
|
170
....*....|....*....
gi 1953366515 2896 AAQRpEAERLQEERLGLER 2914
Cdd:COG4913 416 DLRR-ELRELEAEIASLER 433
|
|
| hsdR |
PRK11448 |
type I restriction enzyme EcoKI subunit R; Provisional |
1345-1458 |
3.79e-03 |
|
type I restriction enzyme EcoKI subunit R; Provisional
Pssm-ID: 236912 [Multi-domain] Cd Length: 1123 Bit Score: 43.02 E-value: 3.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1345 TPAPIAHEDSALRREVECLTQeQSEARKQSEKDRAALLSQMKVFEAELEEQLSRHEA-CAKQAEELSALRQQMAALDKHL 1423
Cdd:PRK11448 136 PPEDPENLLHALQQEVLTLKQ-QLELQAREKAQSQALAEAQQQELVALEGLAAELEEkQQELEAQLEQLQEKAAETSQER 214
|
90 100 110
....*....|....*....|....*....|....*
gi 1953366515 1424 RSQRQFMDEQAVEREHEREEFQREIqrLEEQLRQA 1458
Cdd:PRK11448 215 KQKRKEITDQAAKRLELSEEETRIL--IDQQLRKA 247
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
1207-1546 |
3.82e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.40 E-value: 3.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1207 GLLELALDSTRQLEEARQIHSRFEKEFscknEETAQVVRKQQQLLERLEEE-NAARTRL--MLELHQAQGIIEGFKEEKA 1283
Cdd:COG3096 282 ELSERALELRRELFGARRQLAEEQYRL----VEMARELEELSARESDLEQDyQAASDHLnlVQTALRQQEKIERYQEDLE 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1284 SLQEALCRQETAEHGLAEELEGLRQQLQQAAQQQAELKeenSALWSQKEASAAEAEAREAGTPAPIAHEDSALRREVECL 1363
Cdd:COG3096 358 ELTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLK---SQLADYQQALDVQQTRAIQYQQAVQALEKARALCGLPDL 434
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1364 TQEQSEARKQSEKDRAALLSQMKVfeaELEEQLSRHEACAKQAEELSALRQQMAAldkhlrsqrqfmdeqAVEREHEREE 1443
Cdd:COG3096 435 TPENAEDYLAAFRAKEQQATEEVL---ELEQKLSVADAARRQFEKAYELVCKIAG---------------EVERSQAWQT 496
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1444 FQREIQRLEEQLRQAARPRPHGPRVSDEEQLDEEVELLQEKLREKSDGFNELVIKKELADRQVMIQEEEIRRLEETNASC 1523
Cdd:COG3096 497 ARELLRRYRSQQALAQRLQQLRAQLAELEQRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEA 576
|
330 340
....*....|....*....|...
gi 1953366515 1524 RREAAQLREELERQRDAMKALQQ 1546
Cdd:COG3096 577 VEQRSELRQQLEQLRARIKELAA 599
|
|
| COG3903 |
COG3903 |
Predicted ATPase [General function prediction only]; |
2585-2926 |
3.85e-03 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443109 [Multi-domain] Cd Length: 933 Bit Score: 43.08 E-value: 3.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2585 LRSELRECKQDNERLLASLGEAQKEVLQLRSVLDSKESNLRAALQELESERGKERALQSRLEEAQLQHLQREGQSSKTLE 2664
Cdd:COG3903 557 LRGLLREGRRWLERALAAAGEAAAALAAAAALAAAAAAARAAAAAAAAAAAAAAAAAAAAAAAAAALLLLAALAAAAAAA 636
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2665 ELRASLEKQFAQSSQLCVALKHEQTAKDNLQKELQIEASRCEALLAQERGQLSELQRSLEAEKGRSLELAAALRHERLLT 2744
Cdd:COG3903 637 AAAAAAAAAAAAAAAAAAAAAAAAAAAAALAAAAAAAAAAAAAAAAAAAALAAAAAALAAAAAAAALAAAAAAALAAAAA 716
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2745 EQLSRGPRESPAHHALLRkLKEEKSRAAELQARLEQVQRQQEADVQKRRAELEREKEVRAAQAREPGRCLRREGHASQQQ 2824
Cdd:COG3903 717 AAAAAAAAAALLAAAAAA-ALAAAAAAAALALAAAAAAAAAAAAAAALAAAAAAAALAALLLALAAAAAALAAAAAAAAA 795
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2825 AGLEPLQAGLAAQEGRKDARRADVGPGRADAEMRPTGAKEKLRELELQRQRDEHKIRQLQRTVQALEAKEEAAQRPEAER 2904
Cdd:COG3903 796 AAAAAAAAAAAAAAAAAAAALAAAAAAAAAAAAALAAALAAAAAAAAAAAAAAAAAAALAAALAAAAAAAAAAALAAAAA 875
|
330 340
....*....|....*....|..
gi 1953366515 2905 LQEERLGLERVRQQLLCAAGLL 2926
Cdd:COG3903 876 AAAAAAAALLAAAAAAAAAAAA 897
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
217-416 |
4.21e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 4.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 217 ETAKLKEKLQSEMERNARAVESLKRDwESERGLCLENLRRELSAKHRSELENLQDQFKRELSEQKAELEKIFQAKNQAEC 296
Cdd:COG4913 245 EDAREQIELLEPIRELAERYAAARER-LAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALRE 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 297 ALRTLEAQHEEALRQLREDLQSERCQYVQDLELRLRD-QEVEKQ-----LELESLRASYAELKAQSQEEIRRLWSQLESP 370
Cdd:COG4913 324 ELDELEAQIRGNGGDRLEQLEREIERLERELEERERRrARLEALlaalgLPLPASAEEFAALRAEAAALLEALEEELEAL 403
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1953366515 371 RPDRQDASAR-TPHGEELEQRERECGVQQQRRGR--------RAEQESELGQSPE 416
Cdd:COG4913 404 EEALAEAEAAlRDLRRELRELEAEIASLERRKSNiparllalRDALAEALGLDEA 458
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
146-879 |
4.43e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 42.80 E-value: 4.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 146 SLSNMHTAQLELTQANLQKEKETALTELRAMLNGRHAQeLALLRSRQQQELELAREQHAREQEEMRLRCSQETAKLKEK- 224
Cdd:pfam15921 209 SMSTMHFRSLGSAISKILRELDTEISYLKGRIFPVEDQ-LEALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKa 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 225 ---------LQSEME---RNARAVESLKRDWESERGLCLENLRRELSAKHRS---ELENLQDQF---KRELSEQKAELEK 286
Cdd:pfam15921 288 ssarsqansIQSQLEiiqEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMyedKIEELEKQLvlaNSELTEARTERDQ 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 287 IFQAKNQAECALRTLEAQHEEALRQLreDLQSERCQYVQDLEL-------RLRDQEVEKQLELESLRASYAELKAQSQEE 359
Cdd:pfam15921 368 FSQESGNLDDQLQKLLADLHKREKEL--SLEKEQNKRLWDRDTgnsitidHLRRELDDRNMEVQRLEALLKAMKSECQGQ 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 360 IRRLWSQLESPRPDRQDASARTPHGEELEQREREcgVQQQRRGRRAEQESelgqspegaAERGREDpvlLEQRLQDatEE 439
Cdd:pfam15921 446 MERQMAAIQGKNESLEKVSSLTAQLESTKEMLRK--VVEELTAKKMTLES---------SERTVSD---LTASLQE--KE 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 440 PSLESGGIGPSSMRegerreQRVGPSLQP-ELAENHRCHLTAWTSSLEA--QQQAGLVETQESEGEQREGLSEGPGQELT 516
Cdd:pfam15921 510 RAIEATNAEITKLR------SRVDLKLQElQHLKNEGDHLRNVQTECEAlkLQMAEKDKVIEILRQQIENMTQLVGQHGR 583
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 517 QVPVpcAQGTALKVDTEVVARGLGLEAEH--RLKLLLLQTELKEEMDVLKLENRNLHEKLQHEVCLKEDLERVKHSL--- 591
Cdd:pfam15921 584 TAGA--MQVEKAQLEKEINDRRLELQEFKilKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLlne 661
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 592 VEDHREELKKANERLQLVKQELKDKEAEWKVASEDLK---RKAEEELTLMLHDLKEQAEAEKQSVINKFELREikmrqlq 668
Cdd:pfam15921 662 VKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKmqlKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQK------- 734
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 669 dqqaaQILDLEGSLVEQQGRLRQLEHGLEAEECPRcgHCGQEPAGRVapADQDWELATRRLREDCALQLMQAQSRFLKER 748
Cdd:pfam15921 735 -----QITAKRGQIDALQSKIQFLEEAMTNANKEK--HFLKEEKNKL--SQELSTVATEKNKMAGELEVLRSQERRLKEK 805
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 749 keltekfTAEQDALLQEAQEKHACDMRLLQERHQQHVlsltaQLEARRRAEVEELKASVESERWALAearvAELQTEHAA 828
Cdd:pfam15921 806 -------VANMEVALDKASLQFAECQDIIQRQEQESV-----RLKLQHTLDVKELQGPGYTSNSSMK----PRLLQPASF 869
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|.
gi 1953366515 829 AISALEARHSALLGSLESRHLSEVQAMREEHRQALEQLRVDLEKQLQEKEA 879
Cdd:pfam15921 870 TRTHSNVPSSQSTASFLSHHSRKTNALKEDPTRDLKQLLQELRSVINEEPT 920
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
797-1458 |
5.55e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 42.62 E-value: 5.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 797 RAEVEELKASVESERWALAEARVAELQTEHAAAISALEArhsallgslESRHLSEVQAMREEHRQALEQLRVDLEKQLQE 876
Cdd:COG1196 219 KEELKELEAELLLLKLRELEAELEELEAELEELEAELEE---------LEAELAELEAELEELRLELEELELELEEAQAE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 877 KEAshptpltqalekhplsHGQELPPVEGGLRtqtssgqlegvkapvpPEVQGAQQegapvpAEVEAQRpaLLAELRQET 956
Cdd:COG1196 290 EYE----------------LLAELARLEQDIA----------------RLEERRRE------LEERLEE--LEEELAELE 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 957 GKQQLHCQEEPEVLEcpsepflEQQILQPKgefESEKKVALHEKEihglecaQAQSLYQKEKESLFLQLQEKNNQILQLK 1036
Cdd:COG1196 330 EELEELEEELEELEE-------ELEEAEEE---LEEAEAELAEAE-------EALLEAEAELAEAEEELEELAEELLEAL 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1037 EQILSLSHEVEERRRDLEQLQQRRERENQEGTNLISMLKSDADLSDRERRALRDALRRLLSLFGEMLKVAIALKSRISER 1116
Cdd:COG1196 393 RAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEA 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1117 VGLCLEDED----------------PPGAWPSGQALSAAPVLEETWPGSEAALLELDRSLPECVEMPSEAEISSHICESF 1180
Cdd:COG1196 473 ALLEAALAElleelaeaaarlllllEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIV 552
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1181 FMSPESSLEYEQPIRRiyqsLGLAVEGLLELALDSTRQLEEARQIHSRFEKEFSCKNEETAQVVRKQQQLLERLEEENAA 1260
Cdd:COG1196 553 VEDDEVAAAAIEYLKA----AKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLV 628
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1261 RTRLMLELHQAQGIIEGFKEEKASLQEALCRQETAEHGLAEELEGLRQQLQQAAQQQAELKEENSALWSQKEASAAEAEA 1340
Cdd:COG1196 629 AARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERE 708
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1341 reagtpapIAHEDSALRREVECLTQEQSEARKQSEKDRAALLSQMKVFEAELEEQLSRHEACAKQAEELSALRQQ----- 1415
Cdd:COG1196 709 --------LAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREiealg 780
|
650 660 670 680
....*....|....*....|....*....|....*....|....*...
gi 1953366515 1416 ---MAALD--KHLRSQRQFMDEQAVEREHEREEFQREIQRLEEQLRQA 1458
Cdd:COG1196 781 pvnLLAIEeyEELEERYDFLSEQREDLEEARETLEEAIEEIDRETRER 828
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
2627-2908 |
5.71e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.42 E-value: 5.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2627 ALQELESERGKERALQSRL---EEAQLQHLQREGQSSKTLEELRASLEKQFA-QSSQLCVALKHEQTAKDNLQKELQIEA 2702
Cdd:pfam17380 283 AVSERQQQEKFEKMEQERLrqeKEEKAREVERRRKLEEAEKARQAEMDRQAAiYAEQERMAMERERELERIRQEERKREL 362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2703 SRC-EALLAQERGQLSELQRsLEAEKGRSLELA----AALRHERLLTEQLSRGPRESP------------AHHALLRKLK 2765
Cdd:pfam17380 363 ERIrQEEIAMEISRMRELER-LQMERQQKNERVrqelEAARKVKILEEERQRKIQQQKvemeqiraeqeeARQREVRRLE 441
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2766 EEKSRAAEL-----QARLEQVQ--RQQEADVQKRRAELEREKEVRAAQAREPGRCLRREGHASQQQAGLEPLQAGLAAQE 2838
Cdd:pfam17380 442 EERAREMERvrleeQERQQQVErlRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKRKLLEKE 521
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1953366515 2839 grKDARRADVgpgrADAEMRPTGAKEKLRELEL-QRQRDEHKIRQLQRTVQALEA----KEEAAQRPEAERLQEE 2908
Cdd:pfam17380 522 --MEERQKAI----YEEERRREAEEERRKQQEMeERRRIQEQMRKATEERSRLEAmereREMMRQIVESEKARAE 590
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
192-502 |
6.01e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.42 E-value: 6.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 192 QQQELELAREQHAREQEEMRLRCSQETAKlkeklQSEMERNArAVESLKRDWESERGLCLENLRRElsaKHRSELENL-Q 270
Cdd:pfam17380 297 EQERLRQEKEEKAREVERRRKLEEAEKAR-----QAEMDRQA-AIYAEQERMAMERERELERIRQE---ERKRELERIrQ 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 271 DQFKRELSEQKaELEKIFQAKNQAECALRT-LEAQHEEALrqLREDLQSERCQYVQDLELRLRDQEVEKQLELESLRASY 349
Cdd:pfam17380 368 EEIAMEISRMR-ELERLQMERQQKNERVRQeLEAARKVKI--LEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEER 444
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 350 A-ELKAQSQEEIRRlWSQLESPrpdRQDASARTPHGEELEQRERECGVQQQRRGRRAEQESELGQSPEGAAERGREdpvL 428
Cdd:pfam17380 445 ArEMERVRLEEQER-QQQVERL---RQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKRK---L 517
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1953366515 429 LEQRLQD-ATEEPSLESGGIGPSSMREGERREQRVGPSLQPELAENHRCHLTAWTSSLEAQQQAGLVETQESEGE 502
Cdd:pfam17380 518 LEKEMEErQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLEAMEREREMMRQIVESEKARAEYE 592
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
593-843 |
6.54e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 6.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 593 EDHREELKKANERLQLVKQELKDKEAEWKVASEDLKRkaeeeltlmlhdlKEQAEAEKQSVINKFELREIKMRQLQDQQA 672
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAA-------------LERRIAALARRIRALEQELAALEAELAELE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 673 AQILDLEGSLVEQQGRLRQLEHGLEAEecprcghcGQEPAGRVAPADQDWELATRRlredcaLQLMQAQSRFLKERKELT 752
Cdd:COG4942 90 KEIAELRAELEAQKEELAELLRALYRL--------GRQPPLALLLSPEDFLDAVRR------LQYLKYLAPARREQAEEL 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 753 EKFTAEQDALLQEAQEKHACDMRLLQERHQQHvlSLTAQLEARRRAEVEELKASVESERWALAE--ARVAELQTEHAAAI 830
Cdd:COG4942 156 RADLAELAALRAELEAERAELEALLAELEEER--AALEALKAERQKLLARLEKELAELAAELAElqQEAEELEALIARLE 233
|
250
....*....|...
gi 1953366515 831 SALEARHSALLGS 843
Cdd:COG4942 234 AEAAAAAERTPAA 246
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
2466-3018 |
6.73e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.36 E-value: 6.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2466 SLLERLEKVVQEQEKSLEHLRA---SDRSSLLSEIQALRAQLRmthlQNQEKLQQLCAALTSAEARgsrqEHQLRRQVEL 2542
Cdd:TIGR02169 304 ASLERSIAEKERELEDAEERLAkleAEIDKLLAEIEELEREIE----EERKRRDKLTEEYAELKEE----LEDLRAELEE 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2543 LAYKVEQEKRIASDVQKTLTEEQEKASSVRKLLVVEQTVVRDLRSELRECKQDNERLLASLGE--AQKEVLQL------- 2613
Cdd:TIGR02169 376 VDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINEleEEKEDKALeikkqew 455
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2614 --------RSVLDSKESNLRAALQELESERGKERALQSRLEEAQLQHLQREGQSSKTLEELRASLEKQFAQSSQLCVALK 2685
Cdd:TIGR02169 456 kleqlaadLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGE 535
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2686 HEQTA--------KDNLQKELQIEASRCEALLAQERG-----------QLSELQRSLEAEKG------------------ 2728
Cdd:TIGR02169 536 RYATAievaagnrLNNVVVEDDAVAKEAIELLKRRKAgratflplnkmRDERRDLSILSEDGvigfavdlvefdpkyepa 615
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2729 -----------RSLELAAALRHE-RLLT---EQLSRGPRESPAHHALLRKL---KEEKSRAAELQARLEQVQRqQEADVQ 2790
Cdd:TIGR02169 616 fkyvfgdtlvvEDIEAARRLMGKyRMVTlegELFEKSGAMTGGSRAPRGGIlfsRSEPAELQRLRERLEGLKR-ELSSLQ 694
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2791 KRRAELEREKEVRAAQAREPGRCLRR--------EGHASQQQAGLEPLQAGLAAQEGRKDARRADVGPGRAD-AEMRPTG 2861
Cdd:TIGR02169 695 SELRRIENRLDELSQELSDASRKIGEiekeieqlEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARiEELEEDL 774
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2862 AKEKLRELELQRQRDEHKIRQLQRTVQALEAK----EEAAQRPEAE--RLQEERLGLERVRQQLLCAAGLLTSFIsrtvd 2935
Cdd:TIGR02169 775 HKLEEALNDLEARLSHSRIPEIQAELSKLEEEvsriEARLREIEQKlnRLTLEKEYLEKEIQELQEQRIDLKEQI----- 849
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2936 rtisdwtSSNEKAVTSLLHTLEELKSELstpsSSQKKMTAELQTQLVDvLLKDNDSLTKALRTVTQEKAELCRAVSQLEK 3015
Cdd:TIGR02169 850 -------KSIEKEIENLNGKKEELEEEL----EELEAALRDLESRLGD-LKKERDELEAQLRELERKIEELEAQIEKKRK 917
|
...
gi 1953366515 3016 SLK 3018
Cdd:TIGR02169 918 RLS 920
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
2621-2919 |
6.79e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.36 E-value: 6.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2621 ESNLRAALQELESERGKERALQSRLEEA--QLQHLQREGQSSKTLEELRASLEkqfaqssqlcvalKHEQTAKDNLQKEL 2698
Cdd:TIGR02169 169 DRKKEKALEELEEVEENIERLDLIIDEKrqQLERLRREREKAERYQALLKEKR-------------EYEGYELLKEKEAL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2699 QIEASRCEALLAQERGQLSELQRSLEAekgRSLELAAALRHERLLTEQLSRGPRESPAhhALLRKLKEEKSRAAELQARL 2778
Cdd:TIGR02169 236 ERQKEAIERQLASLEEELEKLTEEISE---LEKRLEEIEQLLEELNKKIKDLGEEEQL--RVKEKIGELEAEIASLERSI 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 2779 EQVQRQQEaDVQKRRAELEREKEVRAAQAREPGRCLRreghasQQQAGLEPLQAGLAAQEGRKDARRADVGPGRAD-AEM 2857
Cdd:TIGR02169 311 AEKERELE-DAEERLAKLEAEIDKLLAEIEELEREIE------EERKRRDKLTEEYAELKEELEDLRAELEEVDKEfAET 383
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1953366515 2858 RPTGAKEKLRELELQRQRDEHK--IRQLQRTVQALEAKEEAAqRPEAERLQEERLGLERVRQQL 2919
Cdd:TIGR02169 384 RDELKDYREKLEKLKREINELKreLDRLQEELQRLSEELADL-NAAIAGIEAKINELEEEKEDK 446
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1432-1684 |
7.01e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 7.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1432 EQAVEREHEREEFQREIQRLEEQLRQAARprphgprvsDEEQLDEEVELLQEKLREKSDGFNELvikkelaDRQVMIQEE 1511
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKK---------EEKALLKQLAALERRIAALARRIRAL-------EQELAALEA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1512 EIRRLEETNASCRREAAQLREELERQ---------RDAMKALQQDKEALQEKQMSNLL---------LVSTLQSKLDEgr 1573
Cdd:COG4942 84 ELAELEKEIAELRAELEAQKEELAELlralyrlgrQPPLALLLSPEDFLDAVRRLQYLkylaparreQAEELRADLAE-- 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1574 cpvppadscpegpevqLEAVQRALQQRESEVLDLKEQLGKMKDDLVSKSDEVLHLNLELDAQSSRAAVSVRELQEENASL 1653
Cdd:COG4942 162 ----------------LAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEEL 225
|
250 260 270
....*....|....*....|....*....|.
gi 1953366515 1654 KAFLQNKEKEIMCVSEQLEAQLAGMGSGALR 1684
Cdd:COG4942 226 EALIARLEAEAAAAAERTPAAGFAALKGKLP 256
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
1371-1519 |
8.09e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 41.77 E-value: 8.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1371 RKQSEKDRAALLSQMKVFEAELEEQLSRHEacakqaEELSALRQQMAALDKHLRsqrqfmdeqavEREHEREEFQREIQR 1450
Cdd:COG2433 383 EELIEKELPEEEPEAEREKEHEERELTEEE------EEIRRLEEQVERLEAEVE-----------ELEAELEEKDERIER 445
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1451 LEEQLRQAARPRPHGPRVSDE-EQLDEEVELLQEKLREKSDGFNEL---------VIKKELADRQVMIQE------EEIR 1514
Cdd:COG2433 446 LERELSEARSEERREIRKDREiSRLDREIERLERELEEERERIEELkrklerlkeLWKLEHSGELVPVKVvekftkEAIR 525
|
....*
gi 1953366515 1515 RLEET 1519
Cdd:COG2433 526 RLEEE 530
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
151-429 |
8.63e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 42.25 E-value: 8.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 151 HTAQLELTQANLQKEKETALTELRAMLNGRHAQELALLRSRQQQELELAREQhareqeEMRLRCSQETA-------KLKE 223
Cdd:COG3096 409 QTRAIQYQQAVQALEKARALCGLPDLTPENAEDYLAAFRAKEQQATEEVLEL------EQKLSVADAARrqfekayELVC 482
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 224 KLQSEMERNA---RAVESLkRDWESERGLC--LENLRRELSakhrsELENLQDQfKRELSEQKAELEKIFQAKNQAECAL 298
Cdd:COG3096 483 KIAGEVERSQawqTARELL-RRYRSQQALAqrLQQLRAQLA-----ELEQRLRQ-QQNAERLLEEFCQRIGQQLDAAEEL 555
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 299 RTLEAQHEEALRQLrEDLQSErcqyvqdlelrLRDQEVEKQLELESLRASYAELKAQ------SQEEIRRLWSQLESPRP 372
Cdd:COG3096 556 EELLAELEAQLEEL-EEQAAE-----------AVEQRSELRQQLEQLRARIKELAARapawlaAQDALERLREQSGEALA 623
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 1953366515 373 DRQDASArtpHGEELEQREREcgVQQQRRGRRAEQESELGQSPEGAAERGREDPVLL 429
Cdd:COG3096 624 DSQEVTA---AMQQLLERERE--ATVERDELAARKQALESQIERLSQPGGAEDPRLL 675
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1389-1566 |
9.82e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.69 E-value: 9.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1389 EAELEEQLSRHEACAKQAEELSALRQQMaaldkhlrsqrqfmdeqaverEHEREEFQREIQRLEEQLRQAarprphgprv 1468
Cdd:PRK12704 46 EAKKEAEAIKKEALLEAKEEIHKLRNEF---------------------EKELRERRNELQKLEKRLLQK---------- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953366515 1469 sdEEQLDEEVELLQEKLREKSDGFNELVIKKELADRQVM----IQEEEIRRLEETNASCRREA-AQLREELERQ--RDAM 1541
Cdd:PRK12704 95 --EENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEeleeLIEEQLQELERISGLTAEEAkEILLEKVEEEarHEAA 172
|
170 180
....*....|....*....|....*..
gi 1953366515 1542 KALQQ-DKEALQE-KQMSNLLLVSTLQ 1566
Cdd:PRK12704 173 VLIKEiEEEAKEEaDKKAKEILAQAIQ 199
|
|
| |
