NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1939369165|ref|XP_037882878|]
View 

conserved oligomeric Golgi complex subunit 5 [Glossina fuscipes]

Protein Classification

COG5 family protein( domain architecture ID 367728)

COG5 family protein similar to Arabidopsis thaliana conserved oligomeric Golgi complex subunit 5 (COG5) which is a component of the conserved oligomeric Golgi complex (COG), and is required for normal Golgi function

Gene Ontology:  GO:0015031
SCOP:  4004137

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
COG5 super family cl46990
Golgi transport complex subunit 5; The COG complex, the peripheral membrane oligomeric protein ...
 37-134 5.36e-04

Golgi transport complex subunit 5; The COG complex, the peripheral membrane oligomeric protein complex involved in intra-Golgi protein trafficking, consists of eight subunits arranged in two lobes bridged by Cog1. Cog5 is in the smaller, B lobe, bound in with Cog6-8, and is itself bound to Cog1 as well as, strongly, to Cog7.


The actual alignment was detected with superfamily member pfam10392:

Pssm-ID: 192566  Cd Length: 132  Bit Score: 40.75  E-value: 5.36e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939369165  37 IQELSKRLnsineelHQQVREKHGALLQQASHAGRFDADLNNLAEDVQQIKSSGYKLKSQVDQQYQLIENQSKVLSRLHE 116
Cdd:pfam10392  42 IQELDRRI-------RTLITSNHLELLSHLSSIKSASSILSTLKSSLEYLSASYERLKSDVLEPYERALKLQSALKRLHQ 114

                          90
                  ....*....|....*...
gi 1939369165 117 LSHLLRSSKTLLILTMKL 134
Cdd:pfam10392 115 TTDLLRALLRFLHLSRQL 132
 
Name Accession Description Interval E-value
COG5 pfam10392
Golgi transport complex subunit 5; The COG complex, the peripheral membrane oligomeric protein ...
 37-134 5.36e-04

Golgi transport complex subunit 5; The COG complex, the peripheral membrane oligomeric protein complex involved in intra-Golgi protein trafficking, consists of eight subunits arranged in two lobes bridged by Cog1. Cog5 is in the smaller, B lobe, bound in with Cog6-8, and is itself bound to Cog1 as well as, strongly, to Cog7.


Pssm-ID: 192566  Cd Length: 132  Bit Score: 40.75  E-value: 5.36e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939369165  37 IQELSKRLnsineelHQQVREKHGALLQQASHAGRFDADLNNLAEDVQQIKSSGYKLKSQVDQQYQLIENQSKVLSRLHE 116
Cdd:pfam10392  42 IQELDRRI-------RTLITSNHLELLSHLSSIKSASSILSTLKSSLEYLSASYERLKSDVLEPYERALKLQSALKRLHQ 114

                          90
                  ....*....|....*...
gi 1939369165 117 LSHLLRSSKTLLILTMKL 134
Cdd:pfam10392 115 TTDLLRALLRFLHLSRQL 132
CwlO1 COG3883
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ...
 2-155 1.23e-03

Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];


Pssm-ID: 443091 [Multi-domain]  Cd Length: 379  Bit Score: 41.74  E-value: 1.23e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939369165   2 DSQIDDSNNKMENAIVEDEDITAALGAMNltigDQIQELSKRLNSINEELhQQVREKHGALLQQASHAgrfDADLNNLAE 81
Cdd:COG3883    15 DPQIQAKQKELSELQAELEAAQAELDALQ----AELEELNEEYNELQAEL-EALQAEIDKLQAEIAEA---EAEIEERRE 86

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1939369165  82 DVQQIKSSGYKLKSQVDQQYQLIENQS--KVLSRLHELSHLLRSSKTLLILTMKLRNTKDVlKQAELHFELNELIE 155
Cdd:COG3883    87 ELGERARALYRSGGSVSYLDVLLGSESfsDFLDRLSALSKIADADADLLEELKADKAELEA-KKAELEAKLAELEA 161
 
Name Accession Description Interval E-value
COG5 pfam10392
Golgi transport complex subunit 5; The COG complex, the peripheral membrane oligomeric protein ...
 37-134 5.36e-04

Golgi transport complex subunit 5; The COG complex, the peripheral membrane oligomeric protein complex involved in intra-Golgi protein trafficking, consists of eight subunits arranged in two lobes bridged by Cog1. Cog5 is in the smaller, B lobe, bound in with Cog6-8, and is itself bound to Cog1 as well as, strongly, to Cog7.


Pssm-ID: 192566  Cd Length: 132  Bit Score: 40.75  E-value: 5.36e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939369165  37 IQELSKRLnsineelHQQVREKHGALLQQASHAGRFDADLNNLAEDVQQIKSSGYKLKSQVDQQYQLIENQSKVLSRLHE 116
Cdd:pfam10392  42 IQELDRRI-------RTLITSNHLELLSHLSSIKSASSILSTLKSSLEYLSASYERLKSDVLEPYERALKLQSALKRLHQ 114

                          90
                  ....*....|....*...
gi 1939369165 117 LSHLLRSSKTLLILTMKL 134
Cdd:pfam10392 115 TTDLLRALLRFLHLSRQL 132
CwlO1 COG3883
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ...
 2-155 1.23e-03

Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];


Pssm-ID: 443091 [Multi-domain]  Cd Length: 379  Bit Score: 41.74  E-value: 1.23e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939369165   2 DSQIDDSNNKMENAIVEDEDITAALGAMNltigDQIQELSKRLNSINEELhQQVREKHGALLQQASHAgrfDADLNNLAE 81
Cdd:COG3883    15 DPQIQAKQKELSELQAELEAAQAELDALQ----AELEELNEEYNELQAEL-EALQAEIDKLQAEIAEA---EAEIEERRE 86

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1939369165  82 DVQQIKSSGYKLKSQVDQQYQLIENQS--KVLSRLHELSHLLRSSKTLLILTMKLRNTKDVlKQAELHFELNELIE 155
Cdd:COG3883    87 ELGERARALYRSGGSVSYLDVLLGSESfsDFLDRLSALSKIADADADLLEELKADKAELEA-KKAELEAKLAELEA 161
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH