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Conserved domains on  [gi|1928063318|ref|XP_037034923|]
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protein ERGIC-53 [Bradysia coprophila]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
lectin_ERGIC-53_ERGL cd06902
ERGIC-53 and ERGL type 1 transmembrane proteins, N-terminal lectin domain; ERGIC-53 and ERGL, ...
 40-265 1.38e-164

ERGIC-53 and ERGL type 1 transmembrane proteins, N-terminal lectin domain; ERGIC-53 and ERGL, N-terminal carbohydrate recognition domain. ERGIC-53 and ERGL are eukaryotic mannose-binding type 1 transmembrane proteins of the early secretory pathway that transport newly synthesized glycoproteins from the endoplasmic reticulum (ER) to the ER-Golgi intermediate compartment (ERGIC). ERGIC-53 and ERGL have an N-terminal lectin-like carbohydrate recognition domain (represented by this alignment model) as well as a C-terminal transmembrane domain. ERGIC-53 functions as a 'cargo receptor' to facilitate the export of glycoproteins with different characteristics from the ER, while the ERGIC-53-like protein (ERGL) which may act as a regulator of ERGIC-53. In mammals, ERGIC-53 forms a complex with MCFD2 (multi-coagulation factor deficiency 2) which then recruits blood coagulation factors V and VIII. Mutations in either MCFD2 or ERGIC-53 cause a mild form of inherited hemophilia known as combined deficiency of factors V and VIII (F5F8D). In addition to the lectin and transmembrane domains, ERGIC-53 and ERGL have a short N-terminal cytoplasmic region of about 12 amino acids. ERGIC-53 forms disulphide-linked homodimers and homohexamers. ERGIC-53 and ERGL are sequence-similar to the lectins of leguminous plants. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "back face". This domain homodimerizes so that adjacent back sheets form a contiguous 12-stranded sheet and homotetramers occur by a back-to-back association of these homodimers. Though L-type lectins exhibit both sequence and structural similarity to one another, their carbohydrate binding specificities differ widely.


:

Pssm-ID: 173890  Cd Length: 225  Bit Score: 465.26  E-value: 1.38e-164
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1928063318  40 RRFEYKYSFKPPYLAQRDGTVPFFEYGGNAIASSESVRVAPSLRSQKGAIWTKSPTNFDFWEIEVVFRVSGRGRIGADGL 119
Cdd:cd06902     1 RRFEYKYSFKGPHLAQKDGTVPFWSHGGDAIASLEQVRLTPSLRSKKGSVWTKNPFSFENWEVEVTFRVTGRGRIGADGL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1928063318 120 AVWYTSQKGDyNGDVFGSSDSWNGLGIFFDSFDNDNKHNNPYIMAVLNDGTRKFDHQNDGTTQLLAGCLRDFRNKPFPTR 199
Cdd:cd06902    81 AIWYTKERGE-EGPVFGSSDKWNGVGIFFDSFDNDGKKNNPAILVVGNDGTKSYDHQNDGLTQALGSCLRDFRNKPYPVR 159

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1928063318 200 ARIEYYKNTLTVLFHNGMTNNNDDYEMCLRAEGVILPKNGYFGISAATGGLADDHDVFHFLTTSLH 265
Cdd:cd06902   160 AKITYYQNVLTVSINNGFTPNKDDYELCTRVENMVLPPNGYFGVSAATGGLADDHDVLSFLTFSLT 225
DUF4201 super family cl25515
Domain of unknown function (DUF4201); This is a family of coiled-coil proteins from eukaryotes. ...
 261-356 3.57e-03

Domain of unknown function (DUF4201); This is a family of coiled-coil proteins from eukaryotes. The function is not known.


The actual alignment was detected with superfamily member pfam13870:

Pssm-ID: 464008 [Multi-domain]  Cd Length: 177  Bit Score: 38.35  E-value: 3.57e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1928063318 261 TTSLHEPGQITETMKLPEAESVKLNQEYEDYQKKmdvqREEYRKEHPEAKKddEEDWFESDNQrELRQiyQSH-SHMTDV 339
Cdd:pfam13870  73 TNTVHALTHLKEKLHFLSAELSRLKKELRERQEL----LAKLRKELYRVKL--ERDKLRKQNK-KLRQ--QGGlLHVPAL 143

                          90
                  ....*....|....*..
gi 1928063318 340 LRDLSRKMDEVIGRQEK 356
Cdd:pfam13870 144 LHDYDKTKAEVEEKRKS 160
 
Name Accession Description Interval E-value
lectin_ERGIC-53_ERGL cd06902
ERGIC-53 and ERGL type 1 transmembrane proteins, N-terminal lectin domain; ERGIC-53 and ERGL, ...
 40-265 1.38e-164

ERGIC-53 and ERGL type 1 transmembrane proteins, N-terminal lectin domain; ERGIC-53 and ERGL, N-terminal carbohydrate recognition domain. ERGIC-53 and ERGL are eukaryotic mannose-binding type 1 transmembrane proteins of the early secretory pathway that transport newly synthesized glycoproteins from the endoplasmic reticulum (ER) to the ER-Golgi intermediate compartment (ERGIC). ERGIC-53 and ERGL have an N-terminal lectin-like carbohydrate recognition domain (represented by this alignment model) as well as a C-terminal transmembrane domain. ERGIC-53 functions as a 'cargo receptor' to facilitate the export of glycoproteins with different characteristics from the ER, while the ERGIC-53-like protein (ERGL) which may act as a regulator of ERGIC-53. In mammals, ERGIC-53 forms a complex with MCFD2 (multi-coagulation factor deficiency 2) which then recruits blood coagulation factors V and VIII. Mutations in either MCFD2 or ERGIC-53 cause a mild form of inherited hemophilia known as combined deficiency of factors V and VIII (F5F8D). In addition to the lectin and transmembrane domains, ERGIC-53 and ERGL have a short N-terminal cytoplasmic region of about 12 amino acids. ERGIC-53 forms disulphide-linked homodimers and homohexamers. ERGIC-53 and ERGL are sequence-similar to the lectins of leguminous plants. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "back face". This domain homodimerizes so that adjacent back sheets form a contiguous 12-stranded sheet and homotetramers occur by a back-to-back association of these homodimers. Though L-type lectins exhibit both sequence and structural similarity to one another, their carbohydrate binding specificities differ widely.


Pssm-ID: 173890  Cd Length: 225  Bit Score: 465.26  E-value: 1.38e-164
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1928063318  40 RRFEYKYSFKPPYLAQRDGTVPFFEYGGNAIASSESVRVAPSLRSQKGAIWTKSPTNFDFWEIEVVFRVSGRGRIGADGL 119
Cdd:cd06902     1 RRFEYKYSFKGPHLAQKDGTVPFWSHGGDAIASLEQVRLTPSLRSKKGSVWTKNPFSFENWEVEVTFRVTGRGRIGADGL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1928063318 120 AVWYTSQKGDyNGDVFGSSDSWNGLGIFFDSFDNDNKHNNPYIMAVLNDGTRKFDHQNDGTTQLLAGCLRDFRNKPFPTR 199
Cdd:cd06902    81 AIWYTKERGE-EGPVFGSSDKWNGVGIFFDSFDNDGKKNNPAILVVGNDGTKSYDHQNDGLTQALGSCLRDFRNKPYPVR 159

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1928063318 200 ARIEYYKNTLTVLFHNGMTNNNDDYEMCLRAEGVILPKNGYFGISAATGGLADDHDVFHFLTTSLH 265
Cdd:cd06902   160 AKITYYQNVLTVSINNGFTPNKDDYELCTRVENMVLPPNGYFGVSAATGGLADDHDVLSFLTFSLT 225
Lectin_leg-like pfam03388
Legume-like lectin family; Lectins are structurally diverse proteins that bind to specific ...
 40-266 4.03e-118

Legume-like lectin family; Lectins are structurally diverse proteins that bind to specific carbohydrates. This family includes the VIP36 and ERGIC-53 lectins. These two proteins were the first recognized members of a family of animal lectins similar (19-24%) to the leguminous plant lectins. The alignment for this family aligns residues lying towards the N-terminus, where the similarity of VIP36 and ERGIC-53 is greatest. However, while Fiedler and Simons identified these proteins as a new family of animal lectins, our alignment also includes yeast sequences. ERGIC-53 is a 53kD protein, localized to the intermediate region between the endoplasmic reticulum and the Golgi apparatus (ER-Golgi-Intermediate Compartment, ERGIC). It was identified as a calcium-dependent, mannose-specific lectin. Its dysfunction has been associated with combined factors V and VIII deficiency OMIM:227300 OMIM:601567, suggesting an important and substrate-specific role for ERGIC-53 in the glycoprotein- secreting pathway.


Pssm-ID: 397453  Cd Length: 226  Bit Score: 347.12  E-value: 4.03e-118
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1928063318  40 RRFEYKYSFKPPYLAQRDGTVPFFEYGGNAIASSESVRVAPSLRSQKGAIWTKSPTNFDFWEIEVVFRVSGRGRIGADGL 119
Cdd:pfam03388   1 DRFKREHSLKKPYLGQGSGTIPNWEYGGSTILSSNYIRLTPDLQSQKGSLWTKQPTDLDSWEVEVTFRVHGSSRLFGDGL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1928063318 120 AVWYTSQKGDyNGDVFGSSDSWNGLGIFFDSFDNDNKHNNPYIMAVLNDGTRKFDHQNDGTTQLLAGCLRDFRNKPFPTR 199
Cdd:pfam03388  81 AIWYTSERGI-EGPVFGSKDKFNGLAIFLDTYDNHNGPLFPYISGMLNDGSKPYDHDKDGTHQELASCTADFRNKDYPTL 159

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1928063318 200 ARIEYYKNTLTVLFHNGMTNNNDDYEMCLRAEGVILPKNGYFGISAATGGLADDHDVFHFLTTSLHE 266
Cdd:pfam03388 160 IRIKYDNNTLTVMIDNGLLENKVDWKLCFQVNNVILPTGYYFGVSAQTGDLSDNHDIFSILTFQLTN 226
DUF4201 pfam13870
Domain of unknown function (DUF4201); This is a family of coiled-coil proteins from eukaryotes. ...
 261-356 3.57e-03

Domain of unknown function (DUF4201); This is a family of coiled-coil proteins from eukaryotes. The function is not known.


Pssm-ID: 464008 [Multi-domain]  Cd Length: 177  Bit Score: 38.35  E-value: 3.57e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1928063318 261 TTSLHEPGQITETMKLPEAESVKLNQEYEDYQKKmdvqREEYRKEHPEAKKddEEDWFESDNQrELRQiyQSH-SHMTDV 339
Cdd:pfam13870  73 TNTVHALTHLKEKLHFLSAELSRLKKELRERQEL----LAKLRKELYRVKL--ERDKLRKQNK-KLRQ--QGGlLHVPAL 143

                          90
                  ....*....|....*..
gi 1928063318 340 LRDLSRKMDEVIGRQEK 356
Cdd:pfam13870 144 LHDYDKTKAEVEEKRKS 160
 
Name Accession Description Interval E-value
lectin_ERGIC-53_ERGL cd06902
ERGIC-53 and ERGL type 1 transmembrane proteins, N-terminal lectin domain; ERGIC-53 and ERGL, ...
 40-265 1.38e-164

ERGIC-53 and ERGL type 1 transmembrane proteins, N-terminal lectin domain; ERGIC-53 and ERGL, N-terminal carbohydrate recognition domain. ERGIC-53 and ERGL are eukaryotic mannose-binding type 1 transmembrane proteins of the early secretory pathway that transport newly synthesized glycoproteins from the endoplasmic reticulum (ER) to the ER-Golgi intermediate compartment (ERGIC). ERGIC-53 and ERGL have an N-terminal lectin-like carbohydrate recognition domain (represented by this alignment model) as well as a C-terminal transmembrane domain. ERGIC-53 functions as a 'cargo receptor' to facilitate the export of glycoproteins with different characteristics from the ER, while the ERGIC-53-like protein (ERGL) which may act as a regulator of ERGIC-53. In mammals, ERGIC-53 forms a complex with MCFD2 (multi-coagulation factor deficiency 2) which then recruits blood coagulation factors V and VIII. Mutations in either MCFD2 or ERGIC-53 cause a mild form of inherited hemophilia known as combined deficiency of factors V and VIII (F5F8D). In addition to the lectin and transmembrane domains, ERGIC-53 and ERGL have a short N-terminal cytoplasmic region of about 12 amino acids. ERGIC-53 forms disulphide-linked homodimers and homohexamers. ERGIC-53 and ERGL are sequence-similar to the lectins of leguminous plants. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "back face". This domain homodimerizes so that adjacent back sheets form a contiguous 12-stranded sheet and homotetramers occur by a back-to-back association of these homodimers. Though L-type lectins exhibit both sequence and structural similarity to one another, their carbohydrate binding specificities differ widely.


Pssm-ID: 173890  Cd Length: 225  Bit Score: 465.26  E-value: 1.38e-164
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1928063318  40 RRFEYKYSFKPPYLAQRDGTVPFFEYGGNAIASSESVRVAPSLRSQKGAIWTKSPTNFDFWEIEVVFRVSGRGRIGADGL 119
Cdd:cd06902     1 RRFEYKYSFKGPHLAQKDGTVPFWSHGGDAIASLEQVRLTPSLRSKKGSVWTKNPFSFENWEVEVTFRVTGRGRIGADGL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1928063318 120 AVWYTSQKGDyNGDVFGSSDSWNGLGIFFDSFDNDNKHNNPYIMAVLNDGTRKFDHQNDGTTQLLAGCLRDFRNKPFPTR 199
Cdd:cd06902    81 AIWYTKERGE-EGPVFGSSDKWNGVGIFFDSFDNDGKKNNPAILVVGNDGTKSYDHQNDGLTQALGSCLRDFRNKPYPVR 159

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1928063318 200 ARIEYYKNTLTVLFHNGMTNNNDDYEMCLRAEGVILPKNGYFGISAATGGLADDHDVFHFLTTSLH 265
Cdd:cd06902   160 AKITYYQNVLTVSINNGFTPNKDDYELCTRVENMVLPPNGYFGVSAATGGLADDHDVLSFLTFSLT 225
Lectin_leg-like pfam03388
Legume-like lectin family; Lectins are structurally diverse proteins that bind to specific ...
 40-266 4.03e-118

Legume-like lectin family; Lectins are structurally diverse proteins that bind to specific carbohydrates. This family includes the VIP36 and ERGIC-53 lectins. These two proteins were the first recognized members of a family of animal lectins similar (19-24%) to the leguminous plant lectins. The alignment for this family aligns residues lying towards the N-terminus, where the similarity of VIP36 and ERGIC-53 is greatest. However, while Fiedler and Simons identified these proteins as a new family of animal lectins, our alignment also includes yeast sequences. ERGIC-53 is a 53kD protein, localized to the intermediate region between the endoplasmic reticulum and the Golgi apparatus (ER-Golgi-Intermediate Compartment, ERGIC). It was identified as a calcium-dependent, mannose-specific lectin. Its dysfunction has been associated with combined factors V and VIII deficiency OMIM:227300 OMIM:601567, suggesting an important and substrate-specific role for ERGIC-53 in the glycoprotein- secreting pathway.


Pssm-ID: 397453  Cd Length: 226  Bit Score: 347.12  E-value: 4.03e-118
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1928063318  40 RRFEYKYSFKPPYLAQRDGTVPFFEYGGNAIASSESVRVAPSLRSQKGAIWTKSPTNFDFWEIEVVFRVSGRGRIGADGL 119
Cdd:pfam03388   1 DRFKREHSLKKPYLGQGSGTIPNWEYGGSTILSSNYIRLTPDLQSQKGSLWTKQPTDLDSWEVEVTFRVHGSSRLFGDGL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1928063318 120 AVWYTSQKGDyNGDVFGSSDSWNGLGIFFDSFDNDNKHNNPYIMAVLNDGTRKFDHQNDGTTQLLAGCLRDFRNKPFPTR 199
Cdd:pfam03388  81 AIWYTSERGI-EGPVFGSKDKFNGLAIFLDTYDNHNGPLFPYISGMLNDGSKPYDHDKDGTHQELASCTADFRNKDYPTL 159

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1928063318 200 ARIEYYKNTLTVLFHNGMTNNNDDYEMCLRAEGVILPKNGYFGISAATGGLADDHDVFHFLTTSLHE 266
Cdd:pfam03388 160 IRIKYDNNTLTVMIDNGLLENKVDWKLCFQVNNVILPTGYYFGVSAQTGDLSDNHDIFSILTFQLTN 226
lectin_leg-like cd07308
legume-like lectins: ERGIC-53, ERGL, VIP36, VIPL, EMP46, and EMP47; The legume-like (leg-like) ...
 42-264 7.91e-75

legume-like lectins: ERGIC-53, ERGL, VIP36, VIPL, EMP46, and EMP47; The legume-like (leg-like) lectins are eukaryotic intracellular sugar transport proteins with a carbohydrate recognition domain similar to that of the legume lectins. This domain binds high-mannose-type oligosaccharides for transport from the endoplasmic reticulum to the Golgi complex. These leg-like lectins include ERGIC-53, ERGL, VIP36, VIPL, EMP46, EMP47, and the UIP5 (ULP1-interacting protein 5) precursor protein. Leg-like lectins have different intracellular distributions and dynamics in the endoplasmic reticulum-Golgi system of the secretory pathway and interact with N-glycans of glycoproteins in a calcium-dependent manner, suggesting a role in glycoprotein sorting and trafficking. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "back face". This domain homodimerizes so that adjacent back sheets form a contiguous 12-stranded sheet and homotetramers occur by a back-to-back association of these homodimers. Though L-type lectins exhibit both sequence and structural similarity to one another, their carbohydrate binding specificities differ widely.


Pssm-ID: 173892  Cd Length: 218  Bit Score: 235.71  E-value: 7.91e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1928063318  42 FEYKYSFKPPYLAQRDGTVPFFEYGGNAIASSESVRVAPSLRSQKGAIWTKSPTNFDFWEIEVVFRVSGRGRIGADGLAV 121
Cdd:cd07308     1 FISEHSLSPPFLDDNDGEIGNWTVGGSTVITKNYIRLTPDVPSQSGSLWSRVPIPAKDFEIEVEFSIHGGSGLGGDGFAF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1928063318 122 WYTSQKGDYnGDVFGSSDSWNGLGIFFDSFDNDNKhNNPYIMAVLNDGTRKFDHQNDGTTQLLAGCLRDFRNKPFPTRAR 201
Cdd:cd07308    81 WYTEEPGSD-GPLFGGPDKFKGLAIFFDTYDNDGK-GFPSISVFLNDGTKSYDYETDGEKLELASCSLKFRNSNAPTTLR 158

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1928063318 202 IEYYKNTLTVLFHNGMTNNnddYEMCLRAEGVILPKNGYFGISAATGGLADDHDVFHFLTTSL 264
Cdd:cd07308   159 ISYLNNTLKVDITYSEGNN---WKECFTVEDVILPSQGYFGFSAQTGDLSDNHDILSVHTYEL 218
lectin_VIP36_VIPL cd06901
VIP36 and VIPL type 1 transmembrane proteins, lectin domain; The vesicular integral protein of ...
 46-259 8.74e-59

VIP36 and VIPL type 1 transmembrane proteins, lectin domain; The vesicular integral protein of 36 kDa (VIP36) is a type 1 transmembrane protein of the mammalian early secretory pathway that acts as a cargo receptor transporting high mannose type glycoproteins between the Golgi and the endoplasmic reticulum (ER). Lectins of the early secretory pathway are involved in the selective transport of newly synthesized glycoproteins from the ER to the ER-Golgi intermediate compartment (ERGIC). The most prominent cycling lectin is the mannose-binding type1 membrane protein ERGIC-53, which functions as a cargo receptor to facilitate export of glycoproteins from the ER. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "back face". This domain homodimerizes so that adjacent back sheets form a contiguous 12-stranded sheet and homotetramers occur by a back-to-back association of these homodimers. Though L-type lectins exhibit both sequence and structural similarity to one another, their carbohydrate binding specificities differ widely.


Pssm-ID: 173889  Cd Length: 248  Bit Score: 194.92  E-value: 8.74e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1928063318  46 YSFKPPYlaQRDG-TVPFFEYGGNAIASSESVRVAPSLRSQKGAIWTKSPTNFDFWEIEVVFRVSGRGR-IGADGLAVWY 123
Cdd:cd06901     6 HSLIKPY--QGVGsSMPLWDFLGSTMVTSQYIRLTPDHQSKQGSIWNRVPCYLRDWEMHVHFKVHGSGKnLFGDGFAIWY 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1928063318 124 TSQKGDyNGDVFGSSDSWNGLGIFFDSFDNDNK---HNNPYIMAVLNDGTRKFDHQNDGTTQLLAGCLRDFRNKPFPTRA 200
Cdd:cd06901    84 TKERMQ-PGPVFGSKDNFHGLAIFFDTYSNQNGeheHVHPYISAMVNNGSLSYDHDRDGTHTELAGCSAPFRNKDHDTFV 162

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1928063318 201 RIEYYKNTLTVLFHngmTNNNDDYEMCLRAEGVILPKNGYFGISAATGGLADDHDVFHF 259
Cdd:cd06901   163 AIRYSKGRLTVMTD---IDGKNEWKECFDVTGVRLPTGYYFGASAATGDLSDNHDIISM 218
lectin_EMP46_EMP47 cd06903
EMP46 and EMP47 type 1 transmembrane proteins, N-terminal lectin domain; EMP46 and EMP47, ...
 84-263 8.67e-21

EMP46 and EMP47 type 1 transmembrane proteins, N-terminal lectin domain; EMP46 and EMP47, N-terminal carbohydrate recognition domain. EMP46 and EMP47 are fungal type-I transmembrane proteins that cycle between the endoplasmic reticulum and the golgi apparatus and are thought to function as cargo receptors that transport newly synthesized glycoproteins. EMP47 is a receptor for EMP46 responsible for the selective transport of EMP46 by forming hetero-oligomerization between the two proteins. EMP46 and EMP47 have an N-terminal lectin-like carbohydrate recognition domain (represented by this alignment model) as well as a C-terminal transmembrane domain. EMP46 and EMP47 are 45% sequence-identical to one another and have sequence homology to a class of intracellular lectins defined by ERGIC-53 and VIP36. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "back face". This domain homodimerizes so that adjacent back sheets form a contiguous 12-stranded sheet and homotetramers occur by a back-to-back association of these homodimers. Though L-type lectins exhibit both sequence and structural similarity to one another, their carbohydrate binding specificities differ widely.


Pssm-ID: 173891  Cd Length: 215  Bit Score: 90.81  E-value: 8.67e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1928063318  84 SQKGAIWTKSP-TNFDFWEIEVVFRVSGRGRIGADGLAVWY-TSQKGDYNGDVFGSSDSWNGLGIFFDSFDNdnkhNNPY 161
Cdd:cd06903    43 NQRGSLWLKKPlSLKDEWTIEWTFRSTGPEGRSGGGLNFWLvKDGNADVGTSSIYGPSKFDGLQLLIDNNGG----SGGS 118

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1928063318 162 IMAVLNDGTRKFDHQNDgTTQLLAGCLRDFRNKPFPTRARIEY--YKNTLTVLFhngmtnnndDYEMCLRAEGVILPKNG 239
Cdd:cd06903   119 LRGFLNDGSKDYKNEDV-DSLAFGSCLFAYQDSGVPSTIRLSYdaLNSLFKVQV---------DNRLCFQTDKVQLPQGG 188

                         170       180
                  ....*....|....*....|....*
gi 1928063318 240 Y-FGISAATGGLADDHDVFHFLTTS 263
Cdd:cd06903   189 YrFGITAANADNPESFEILKLKVWN 213
lectin_L-type cd01951
legume lectins; The L-type (legume-type) lectins are a highly diverse family of carbohydrate ...
 52-256 1.10e-17

legume lectins; The L-type (legume-type) lectins are a highly diverse family of carbohydrate binding proteins that generally display no enzymatic activity toward the sugars they bind. This family includes arcelin, concanavalinA, the lectin-like receptor kinases, the ERGIC-53/VIP36/EMP46 type1 transmembrane proteins, and an alpha-amylase inhibitor. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "back face". This domain homodimerizes so that adjacent back sheets form a contiguous 12-stranded sheet and homotetramers occur by a back-to-back association of these homodimers. Though L-type lectins exhibit both sequence and structural similarity to one another, their carbohydrate binding specificities differ widely.


Pssm-ID: 173886 [Multi-domain]  Cd Length: 223  Bit Score: 82.09  E-value: 1.10e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1928063318  52 YLAQRDGTVPFFEYGGNA--IASSESVRVAPSLRSQKGAIWTKSPTNFDF-WEIEVVFRVSGRGRIGADGLAVWY----- 123
Cdd:cd01951     5 FSNFSNNNQSNWQLNGSAtlTTDSGVLRLTPDTGNQAGSAWYKTPIDLSKdFTTTFKFYLGTKGTNGADGIAFVLqndpa 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1928063318 124 TSQKGDYNGDVFGSSDSWNGLGIFFDSFDND--NKHNNPYImAVlnDGTRKFDHQNDGTTqlLAGCLRDFRNKP-FPTRA 200
Cdd:cd01951    85 GALGGGGGGGGLGYGGIGNSVAVEFDTYKNDdnNDPNGNHI-SI--DVNGNGNNTALATS--LGSASLPNGTGLgNEHTV 159

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1928063318 201 RIEY--YKNTLTVLFHNGMTNNNDDYEMCLrAEGVILPKNGYFGISAATGGLADDHDV 256
Cdd:cd01951   160 RITYdpTTNTLTVYLDNGSTLTSLDITIPV-DLIQLGPTKAYFGFTASTGGLTNLHDI 216
Bact_lectin pfam18483
Bacterial lectin; This entry primarily matches to legume-like lectin domains found in ...
 62-264 1.14e-06

Bacterial lectin; This entry primarily matches to legume-like lectin domains found in prokaryotes.


Pssm-ID: 465784  Cd Length: 211  Bit Score: 49.36  E-value: 1.14e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1928063318  62 FFEYGGNAIASSE--SVRVAPSLRSQKGAIWTKSPTNF--DFweiEVVFRV----SGRGRIGADGLAvwYTSQKGDYNGD 133
Cdd:pfam18483   9 YFNLNGDATKQNYngIVTLTPDQNGQSGAVTLKNKIDLnkDF---TLKGAVnlgnKQSNTGGADGIG--FVFHPGGGIGT 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1928063318 134 V---FGSSDSWNGLGIFFDSFDNDNKHNN-----------PYIMAVLNDGTRKF----DHQNDGTTQLLAGCLRDFRNKP 195
Cdd:pfam18483  84 SgggLGIGGLPNAFGFKFDTYYNSGDSDPnadpsqgaggdPYGAFVTTDSNGNLtdvgSDSQTGSTQALDSSLEDGAFHP 163

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1928063318 196 FptraRIEY--YKNTLTVLFHngmTNNNDDYEMclraegvilpkngYFGISAATGGladDHDVFHFLTTSL 264
Cdd:pfam18483 164 I----TISYdaNTKTLTVTYD---GNDSSSTKV-------------YFGFAASTGG---STNLQQFKITSL 211
DUF4201 pfam13870
Domain of unknown function (DUF4201); This is a family of coiled-coil proteins from eukaryotes. ...
 261-356 3.57e-03

Domain of unknown function (DUF4201); This is a family of coiled-coil proteins from eukaryotes. The function is not known.


Pssm-ID: 464008 [Multi-domain]  Cd Length: 177  Bit Score: 38.35  E-value: 3.57e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1928063318 261 TTSLHEPGQITETMKLPEAESVKLNQEYEDYQKKmdvqREEYRKEHPEAKKddEEDWFESDNQrELRQiyQSH-SHMTDV 339
Cdd:pfam13870  73 TNTVHALTHLKEKLHFLSAELSRLKKELRERQEL----LAKLRKELYRVKL--ERDKLRKQNK-KLRQ--QGGlLHVPAL 143

                          90
                  ....*....|....*..
gi 1928063318 340 LRDLSRKMDEVIGRQEK 356
Cdd:pfam13870 144 LHDYDKTKAEVEEKRKS 160
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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