|
Name |
Accession |
Description |
Interval |
E-value |
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
154-954 |
0e+00 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 1022.83 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 154 LQTQLKEVLRENDLLRKDVEVKESKLSSSMNSIKTFWSPELKKERALRKDEASKITIWKEQYRVVQEENQHMQMTIQALQ 233
Cdd:pfam10174 1 LQAQLRDLQRENELLRRELDIKESKLGSSMNSIKTFWSPELKKERALRKEEAARISVLKEQYRVTQEENQHLQLTIQALQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 234 DELRIQRDLNQLFQQD--SSSRTGEPCVA--ELTEENFQRLHAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESI 309
Cdd:pfam10174 81 DELRAQRDLNQLLQQDftTSPVDGEDKFStpELTEENFRRLQSEHERQAKELFLLRKTLEEMELRIETQKQTLGARDESI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 310 KKLLEMLQSKGLSAKATEEDHERTRRLAEAEMHVHHLESLLEQKEKENNMLREEMHRRFENAPDSAKTKALQTVIEMKDS 389
Cdd:pfam10174 161 KKLLEMLQSKGLPKKSGEEDWERTRRIAEAEMQLGHLEVLLDQKEKENIHLREELHRRNQLQPDPAKTKALQTVIEMKDT 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 390 KISSMERGLRDLEEEIQMLKSNGALSSEEREEEMKQMEVYRSHSKFMKNKIGQVKQELSRKDTELLALQTKLETLTNQFS 469
Cdd:pfam10174 241 KISSLERNIRDLEDEVQMLKTNGLLHTEDREEEIKQMEVYKSHSKFMKNKIDQLKQELSKKESELLALQTKLETLTNQNS 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 470 DSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQ 549
Cdd:pfam10174 321 DCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKSTLAGEIRDLKDMLDVKERKINVLQ 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 550 KKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDL 629
Cdd:pfam10174 401 KKIENLQEQLRDKDKQLAGLKERVKSLQTDSSNTDTALTTLEEALSEKERIIERLKEQREREDRERLEELESLKKENKDL 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 630 REKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASPEMSDRI 709
Cdd:pfam10174 481 KEKVSALQPELTEKESSLIDLKEHASSLASSGLKKDSKLKSLEIAVEQKKEECSKLENQLKKAHNAEEAVRTNPEINDRI 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 710 QQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELE----RQVKDQNKKVANLKHKEQVEKKKSAQMLEE 785
Cdd:pfam10174 561 RLLEQEVARYKEESGKAQAEVERLLGILREVENEKNDKDKKIAELEsltlRQMKEQNKKVANIKHGQQEMKKKGAQLLEE 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 786 ARRREDSLSDSSQQlqdslrkkddrieeleealresvqitaeremvlaqeesartnaeKQVEELLMAMEKVKQELESMKA 865
Cdd:pfam10174 641 ARRREDNLADNSQQ--------------------------------------------LQLEELMGALEKTRQELDATKA 676
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 866 KLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSS-KKKTQEEVAALKREKDRLVQQL 944
Cdd:pfam10174 677 RLSSTQQSLAEKDGHLTNLRAERRKQLEEILEMKQEALLAAISEKDANIALLELSSSkKKKTQEEVMALKREKDRLVHQL 756
|
810
....*....|
gi 1907170192 945 KQQTQNRMKL 954
Cdd:pfam10174 757 KQQTQNRMKL 766
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
203-961 |
6.85e-21 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 99.36 E-value: 6.85e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 203 DEASKITIWKEQYRVVQEENQHMQMTIQALQDELR-IQRDLNQLFQQdsssrtgepcvAELTEEnFQRLHAEHERQAKEL 281
Cdd:TIGR02168 162 EEAAGISKYKERRKETERKLERTRENLDRLEDILNeLERQLKSLERQ-----------AEKAER-YKELKAELRELELAL 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 282 FLLRktleemelrIETQKQTLNARDESIKKLLEMLQSKGLSAKATEEDHERTR-RLAEAEMHVHHLES-LLEQKEKENNM 359
Cdd:TIGR02168 230 LVLR---------LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRlEVSELEEEIEELQKeLYALANEISRL 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 360 LREEMHRRFENAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSSEEREEEMKQMEVYRSHSKFMKNK 439
Cdd:TIGR02168 301 EQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQ 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 440 IGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLtaKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQD 519
Cdd:TIGR02168 381 LETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEI--EELLKKLEEAELKELQAELEELEEELEELQEELER 458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 520 MAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVK------------------------- 574
Cdd:TIGR02168 459 LEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKnqsglsgilgvlselisvdegyeaa 538
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 575 -------SLQADTTNTDTALTTLEEALADKE---RTIERLKEQRDR----DEREKQEEIDTYKKDLKDLREKVSLLQGDL 640
Cdd:TIGR02168 539 ieaalggRLQAVVVENLNAAKKAIAFLKQNElgrVTFLPLDSIKGTeiqgNDREILKNIEGFLGVAKDLVKFDPKLRKAL 618
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 641 SEKEASLLDIKEHASSLASSG-LKKDSRLKTLE-------------------------IALEQKKEECLKMESQLKKAHE 694
Cdd:TIGR02168 619 SYLLGGVLVVDDLDNALELAKkLRPGYRIVTLDgdlvrpggvitggsaktnssilerrREIEELEEKIEELEEKIAELEK 698
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 695 ATLEARaspemsDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVANLKHKEQv 774
Cdd:TIGR02168 699 ALAELR------KELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLE- 771
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 775 ekkKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAME 854
Cdd:TIGR02168 772 ---EAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIE 848
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 855 KVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALK 934
Cdd:TIGR02168 849 ELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLE 928
|
810 820
....*....|....*....|....*..
gi 1907170192 935 REKDRLVQQLKQQTQNRMKLMADNYED 961
Cdd:TIGR02168 929 LRLEGLEVRIDNLQERLSEEYSLTLEE 955
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
399-940 |
3.02e-19 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 93.85 E-value: 3.02e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 399 RDLEEEIQMLKSNGALSseEREEEMKQMEVYRSHSKFMKNKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVL 478
Cdd:COG1196 216 RELKEELKELEAELLLL--KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYEL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 479 KESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQ 558
Cdd:COG1196 294 LAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAE 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 559 LRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQG 638
Cdd:COG1196 374 LAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAE 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 639 DLSEKEASLLDIKEHASSLAsSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASPEMSDRIQQLEREISr 718
Cdd:COG1196 454 LEEEEEALLELLAELLEEAA-LLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIG- 531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 719 ykDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELErqvKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSDssq 798
Cdd:COG1196 532 --VEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYL---KAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDL--- 603
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 799 qLQDSLRKKDDRIEELEEALRESVQITAEREMvlAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKE 878
Cdd:COG1196 604 -VASDLREADARYYVLGDTLLGRTLVAARLEA--ALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAE 680
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907170192 879 THLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRL 940
Cdd:COG1196 681 LEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELL 742
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
378-940 |
6.78e-18 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 89.61 E-value: 6.78e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 378 KALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSSEEREEEMKQMEVYRSHSKFMKNKIGQVKQELSRKDTELLAL 457
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRREL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 458 QTKLETLTNQfsdskqhIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDM 537
Cdd:COG1196 315 EERLEELEEE-------LAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEE 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 538 LDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQE 617
Cdd:COG1196 388 LLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAE 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 618 EidtyKKDLKDLREKVSLLQGDLSEKEASLLDIKEhasSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATL 697
Cdd:COG1196 468 L----LEEAALLEAALAELLEELAEAAARLLLLLE---AEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAAL 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 698 EARASPEMSDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKDqnkkVANLKHKEQVEKK 777
Cdd:COG1196 541 EAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDL----VASDLREADARYY 616
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 778 KSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVK 857
Cdd:COG1196 617 VLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELE 696
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 858 QELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREK 937
Cdd:COG1196 697 EALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREI 776
|
...
gi 1907170192 938 DRL 940
Cdd:COG1196 777 EAL 779
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
272-941 |
8.64e-17 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 85.89 E-value: 8.64e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 272 AEHERQAKELFLLRKTLEEMELRIETQKQTLN------ARDESIKKLLEMLQSKGLSAKATE-EDHER-----TRRLAEA 339
Cdd:TIGR02169 170 RKKEKALEELEEVEENIERLDLIIDEKRQQLErlrrerEKAERYQALLKEKREYEGYELLKEkEALERqkeaiERQLASL 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 340 EMHVHHLESLLEQKEKENN---MLREEMHRRFEnAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIqmlksngalss 416
Cdd:TIGR02169 250 EEELEKLTEEISELEKRLEeieQLLEELNKKIK-DLGEEEQLRVKEKIGELEAEIASLERSIAEKEREL----------- 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 417 EEREEEMKQMEVyrshskfmknKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEV 496
Cdd:TIGR02169 318 EDAEERLAKLEA----------EIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDEL 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 497 DALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSL 576
Cdd:TIGR02169 388 KDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKY 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 577 QADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEIDTyKKDLKDLREKVSLLQGDLSEKE------------ 644
Cdd:TIGR02169 468 EQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAV-EEVLKASIQGVHGTVAQLGSVGeryataievaag 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 645 ----------------------------ASLLDI-KEHASSLASSGLKKDS----------------------------- 666
Cdd:TIGR02169 547 nrlnnvvveddavakeaiellkrrkagrATFLPLnKMRDERRDLSILSEDGvigfavdlvefdpkyepafkyvfgdtlvv 626
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 667 -------------RLKTLEIALEQKKEECLKMESQLKKAHEATLEARAS-PEMSDRIQQLEREISRYKDESSKAQTEVDR 732
Cdd:TIGR02169 627 edieaarrlmgkyRMVTLEGELFEKSGAMTGGSRAPRGGILFSRSEPAElQRLRERLEGLKRELSSLQSELRRIENRLDE 706
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 733 LLEILKEVENEKNDKDKKIAELERQVKDQNKKVANLKHK---------------EQVEKKKSAQMLEEARRR------ED 791
Cdd:TIGR02169 707 LSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDlssleqeienvkselKELEARIEELEEDLHKLEealndlEA 786
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 792 SLSDSS-QQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSST 870
Cdd:TIGR02169 787 RLSHSRiPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEEL 866
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907170192 871 QQSLAEK-------ETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLV 941
Cdd:TIGR02169 867 EEELEELeaalrdlESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDE 944
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
351-1055 |
1.19e-16 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 85.96 E-value: 1.19e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 351 EQKEKENNMLREEMHRRFENAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSSEE--REEEMKQMEV 428
Cdd:PTZ00121 1113 EARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAarKAEEVRKAEE 1192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 429 YRSHSKFMKNKIGQvKQELSRKDTEllalqtkletlTNQFSDSKQHIEVLK-ESLTAKEQRAAILQTEVDALRLRLEEKE 507
Cdd:PTZ00121 1193 LRKAEDARKAEAAR-KAEEERKAEE-----------ARKAEDAKKAEAVKKaEEAKKDAEEAKKAEEERNNEEIRKFEEA 1260
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 508 TMLNKKTKQIQDMAEEKgTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQmsslKERVKSLQADTTNTDTAL 587
Cdd:PTZ00121 1261 RMAHFARRQAAIKAEEA-RKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKA----DEAKKKAEEAKKKADAAK 1335
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 588 TTLEEAlaDKERTIERLKEQRDRDEREKQEEidtyKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSR 667
Cdd:PTZ00121 1336 KKAEEA--KKAAEAAKAEAEAAADEAEAAEE----KAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADE 1409
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 668 LKTLEiALEQKKEECLKMESQLKKAHEA---TLEARASPEMSDRIQQLER-EISRYKDESSKAQTEVDRLLEILKEVE-- 741
Cdd:PTZ00121 1410 LKKAA-AAKKKADEAKKKAEEKKKADEAkkkAEEAKKADEAKKKAEEAKKaEEAKKKAEEAKKADEAKKKAEEAKKADea 1488
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 742 NEKNDKDKKIAELERQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRK-----KDDRIEELEE 816
Cdd:PTZ00121 1489 KKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKaeelkKAEEKKKAEE 1568
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 817 ALRESvqitAEREMVLAQEESARTNAEKQVEELLM---------AMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAE 887
Cdd:PTZ00121 1569 AKKAE----EDKNMALRKAEEAKKAEEARIEEVMKlyeeekkmkAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAE 1644
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 888 RRKHLEEVLEMKQE-----ALLAAISEKDANIA-LLELSSSKKKTQEEVAALKREKDRLVQQLKQQTQNRMKLMADNYED 961
Cdd:PTZ00121 1645 EKKKAEELKKAEEEnkikaAEEAKKAEEDKKKAeEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKA 1724
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 962 DHFRSSRSNQTNHKPSPDQIIQPLLELDQNRSKlklYIGHLTALCHDRDPLILRGLTPPASYNADGEQAAWENELQKMTQ 1041
Cdd:PTZ00121 1725 EEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKK---KIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIK 1801
|
730
....*....|....
gi 1907170192 1042 EQLQNELEKVEGDN 1055
Cdd:PTZ00121 1802 DIFDNFANIIEGGK 1815
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
442-950 |
1.55e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 84.99 E-value: 1.55e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 442 QVKQELSRKDTELLALqtkletltnqfsdskqHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMA 521
Cdd:COG1196 217 ELKEELKELEAELLLL----------------KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELE 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 522 EEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTI 601
Cdd:COG1196 281 LELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAEL 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 602 ERLKEQRDRDER---EKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIALEQK 678
Cdd:COG1196 361 AEAEEALLEAEAelaEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEE 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 679 KEECLKMESQLKKAHEATLEARAspemsdRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAE-LERQ 757
Cdd:COG1196 441 EEALEEAAEEEAELEEEEEALLE------LLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGvKAAL 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 758 VKDQNKKVANLKHKEQVEKKKSAQMLEEA------RRREDSLSDSSQQLQDSLRKKD--------DRIEELEEALRESVQ 823
Cdd:COG1196 515 LLAGLRGLAGAVAVLIGVEAAYEAALEAAlaaalqNIVVEDDEVAAAAIEYLKAAKAgratflplDKIRARAALAAALAR 594
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 824 ITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSST-QQSLAEKETHLTNLRAERRKHLEEVLEMKQEA 902
Cdd:COG1196 595 GAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTlAGRLREVTLEGEGGSAGGSLTGGSRRELLAAL 674
|
490 500 510 520
....*....|....*....|....*....|....*....|....*...
gi 1907170192 903 LLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQQTQN 950
Cdd:COG1196 675 LEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELE 722
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
302-954 |
2.85e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 84.34 E-value: 2.85e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 302 LNARDESIKKLLEmlQSKGLSaKATEEDHERTRRLAEAEMHVHHLESLLEQKEKENNMLRE-----EMHRRFENAPDSAK 376
Cdd:TIGR02168 150 IEAKPEERRAIFE--EAAGIS-KYKERRKETERKLERTRENLDRLEDILNELERQLKSLERqaekaERYKELKAELRELE 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 377 T-------KALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSSEEREEEMKQMEVYRSHSKFMKNKIGQVKQELSR 449
Cdd:TIGR02168 227 LallvlrlEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQI 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 450 KDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAG 529
Cdd:TIGR02168 307 LRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRS 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 530 EIHDLkdmldvkERKVNVLQKKIENLqeqlrdkEKQMSSLKERVKSLQADTTNTDTA----------------LTTLEEA 593
Cdd:TIGR02168 387 KVAQL-------ELQIASLNNEIERL-------EARLERLEDRRERLQQEIEELLKKleeaelkelqaeleelEEELEEL 452
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 594 LADKERTIERLKEQRDRdEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKE----------------------------- 644
Cdd:TIGR02168 453 QEELERLEEALEELREE-LEEAEQALDAAERELAQLQARLDSLERLQENLEgfsegvkallknqsglsgilgvlselisv 531
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 645 ----------------ASLLDIKEHASSLASSGLKKDSRLKTLEIALEQKKE----------------------ECLKME 686
Cdd:TIGR02168 532 degyeaaieaalggrlQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGteiqgndreilkniegflgvakDLVKFD 611
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 687 SQLKKAHEA----------------------------TLE------------ARASPEMSD-----RIQQLEREISRYKD 721
Cdd:TIGR02168 612 PKLRKALSYllggvlvvddldnalelakklrpgyrivTLDgdlvrpggvitgGSAKTNSSIlerrrEIEELEEKIEELEE 691
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 722 ESSKAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVANLKHKEqvekkksaqmlEEARRREDSLSDSSQQLQ 801
Cdd:TIGR02168 692 KIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEV-----------EQLEERIAQLSKELTELE 760
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 802 DSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHL 881
Cdd:TIGR02168 761 AEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRL 840
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907170192 882 TNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQQTQNRMKL 954
Cdd:TIGR02168 841 EDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSEL 913
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
230-867 |
5.14e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 83.45 E-value: 5.14e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 230 QALQDELRiQRDLNQLFQQDsssrtgepcvaELTEENFQRLHAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESI 309
Cdd:COG1196 216 RELKEELK-ELEAELLLLKL-----------RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELEL 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 310 KKLLEMLQSKGLSAKATEEDHERTRRLAEAemhvhhLESLLEQKEKENNMLREEMHRrfenapDSAKTKALQTVIEMKDS 389
Cdd:COG1196 284 EEAQAEEYELLAELARLEQDIARLEERRRE------LEERLEELEEELAELEEELEE------LEEELEELEEELEEAEE 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 390 KISSMERGLRDLEEEIQMLKSngALSSEEREEEmkqmevyrshskfmknkigQVKQELSRKDTELLALQTKLETLTNQFS 469
Cdd:COG1196 352 ELEEAEAELAEAEEALLEAEA--ELAEAEEELE-------------------ELAEELLEALRAAAELAAQLEELEEAEE 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 470 DSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQ 549
Cdd:COG1196 411 ALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAA 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 550 KKIENLQEQLRDKE-KQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDErekqeeidtykkDLKD 628
Cdd:COG1196 491 ARLLLLLEAEADYEgFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVE------------DDEV 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 629 LREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASPEMSDR 708
Cdd:COG1196 559 AAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRR 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 709 IQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVANLKHKEQVEKKKSAQMLEEARR 788
Cdd:COG1196 639 AVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLE 718
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 789 REDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEEL----LMAME---KVKQELE 861
Cdd:COG1196 719 EELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALgpvnLLAIEeyeELEERYD 798
|
....*.
gi 1907170192 862 SMKAKL 867
Cdd:COG1196 799 FLSEQR 804
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
299-899 |
5.44e-16 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 83.19 E-value: 5.44e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 299 KQTLNARDESIKKLLemlqskglsaKATEEDHERTR----RLAEAEMHVHHLESLLEQKEKENNMLREEMHRrfenapds 374
Cdd:PRK03918 171 IKEIKRRIERLEKFI----------KRTENIEELIKekekELEEVLREINEISSELPELREELEKLEKEVKE-------- 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 375 akTKALQTVIEMKDSKISSMERGLRDLEEEIQMLksngalssEEREEEMKqmevyrSHSKFMKNKIGQVKqELSRKDTEL 454
Cdd:PRK03918 233 --LEELKEEIEELEKELESLEGSKRKLEEKIREL--------EERIEELK------KEIEELEEKVKELK-ELKEKAEEY 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 455 LalqtKLETLTNQFSDSKQHIEVLKESLtakEQRAAILQTEVDalrlRLEEKETMLNKKTKQIQDMAEEKGtQAGEIHDL 534
Cdd:PRK03918 296 I----KLSEFYEEYLDELREIEKRLSRL---EEEINGIEERIK----ELEEKEERLEELKKKLKELEKRLE-ELEERHEL 363
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 535 KDMLDVKERKVNVLQKKIENLQeqLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKE-------- 606
Cdd:PRK03918 364 YEEAKAKKEELERLKKRLTGLT--PEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKakgkcpvc 441
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 607 QRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKehasslasSGLKKDSRLKTLEIALEQKKEeclkME 686
Cdd:PRK03918 442 GRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELE--------KVLKKESELIKLKELAEQLKE----LE 509
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 687 SQLKKAHEATLEARASP--EMSDRIQQLEREISRYKDEsskaqtevdrlLEILKEVENEKNDKDKKIAELERQVKDQNKK 764
Cdd:PRK03918 510 EKLKKYNLEELEKKAEEyeKLKEKLIKLKGEIKSLKKE-----------LEKLEELKKKLAELEKKLDELEEELAELLKE 578
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 765 VANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQ-EESARTNAE 843
Cdd:PRK03918 579 LEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKElEELEKKYSE 658
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*.
gi 1907170192 844 KQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMK 899
Cdd:PRK03918 659 EEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELE 714
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
437-814 |
3.35e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 80.87 E-value: 3.35e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 437 KNKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQ 516
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKE 755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 517 IQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALAD 596
Cdd:TIGR02168 756 LTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAA 835
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 597 KERTIERLKEQrdrderekqeeidtykkdLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIALE 676
Cdd:TIGR02168 836 TERRLEDLEEQ------------------IEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELE 897
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 677 QKKEECLKMESQLKKAHEATLEARAS-PEMSDRIQQLEREISRYKDE-SSKAQTEvdrlleiLKEVENEKNDKDKKIAEL 754
Cdd:TIGR02168 898 ELSEELRELESKRSELRRELEELREKlAQLELRLEGLEVRIDNLQERlSEEYSLT-------LEEAEALENKIEDDEEEA 970
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907170192 755 ERQVKDQNKKVA-----NLKHKEQVEKKKsaQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEEL 814
Cdd:TIGR02168 971 RRRLKRLENKIKelgpvNLAAIEEYEELK--ERYDFLTAQKEDLTEAKETLEEAIEEIDREARER 1033
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
373-938 |
6.21e-15 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 79.68 E-value: 6.21e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 373 DSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSSEEREEEMKQMEVYRSHSKFMKNKIGQVKQELSRKDT 452
Cdd:TIGR04523 66 DEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLT 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 453 ELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGtqagEIH 532
Cdd:TIGR04523 146 EIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLES----QIS 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 533 DLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDE 612
Cdd:TIGR04523 222 ELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLN 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 613 REKQEEID-TYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIALEQKKEEC--LKMESQL 689
Cdd:TIGR04523 302 NQKEQDWNkELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIekLKKENQS 381
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 690 KKAHEATLEARAS------PEMSDRIQQLEREISRYKDESSKAQTEVDRLLEI-------LKEVENEKNDKDKKIAELER 756
Cdd:TIGR04523 382 YKQEIKNLESQINdleskiQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETiiknnseIKDLTNQDSVKELIIKNLDN 461
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 757 QVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSL-------SDSSQQLQDSLRKKDDRIEELEEALRESVQI----- 824
Cdd:TIGR04523 462 TRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELkklneekKELEEKVKDLTKKISSLKEKIEKLESEKKEKeskis 541
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 825 TAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALL 904
Cdd:TIGR04523 542 DLEDELNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEK 621
|
570 580 590
....*....|....*....|....*....|....
gi 1907170192 905 AAISEKDANIALLELSSSKKKTQEEVAALKREKD 938
Cdd:TIGR04523 622 AKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIK 655
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
331-652 |
6.49e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 76.63 E-value: 6.49e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 331 ERTRRLAEAEMHVHHLESLLEQKEKENNMLREEMHRRFENAPDsaktkaLQTVIEMKDSKISSMERGLRDLEEEIQMLKS 410
Cdd:TIGR02168 674 ERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQ------LRKELEELSRQISALRKDLARLEAEVEQLEE 747
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 411 NGALSSEEREEEMKQMEVYRShskfmknKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAA 490
Cdd:TIGR02168 748 RIAQLSKELTELEAEIEELEE-------RLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAA 820
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 491 ILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLK 570
Cdd:TIGR02168 821 NLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELS 900
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 571 ERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEidtYKKDLKDLREKVSLLQGDLSEKEASLLDI 650
Cdd:TIGR02168 901 EELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEE---YSLTLEEAEALENKIEDDEEEARRRLKRL 977
|
..
gi 1907170192 651 KE 652
Cdd:TIGR02168 978 EN 979
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
436-821 |
3.41e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 74.33 E-value: 3.41e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 436 MKNKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTK 515
Cdd:TIGR02169 686 LKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEA 765
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 516 QIQDMAEEKGTQAGEIHDLKDMLDvkerkvnvlQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALA 595
Cdd:TIGR02169 766 RIEELEEDLHKLEEALNDLEARLS---------HSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQ 836
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 596 DKERTIERLKEQRDrderEKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKehasslassglKKDSRLKTLEIAL 675
Cdd:TIGR02169 837 ELQEQRIDLKEQIK----SIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLK-----------KERDELEAQLREL 901
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 676 EQKKEEcLKMESQLKKAHEATLEARASpEMSDRIQQLEREISRYKDESSKaqtevdrlLEILKEVENEKNDKDKKIAELE 755
Cdd:TIGR02169 902 ERKIEE-LEAQIEKKRKRLSELKAKLE-ALEEELSEIEDPKGEDEEIPEE--------ELSLEDVQAELQRVEEEIRALE 971
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907170192 756 RqvkdqnkkvANLKHKEQvekkksaqmLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRES 821
Cdd:TIGR02169 972 P---------VNMLAIQE---------YEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKREV 1019
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
144-867 |
1.04e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 72.78 E-value: 1.04e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 144 RQARDNTIMDLQTQLKEVLRENDLLRKDVEVKESKLSSSMNSIKTFwSPELKKERALRKDEASKITIWKEQYRVVQEENQ 223
Cdd:TIGR02168 311 LANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESL-EAELEELEAELEELESRLEELEEQLETLRSKVA 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 224 HMQMTIQALQDELRIQRDLnqlfQQDSSSRtgepcVAELTEENFQRLHAEHERQAKELFLLRKTLEEMELRIETQKQTLN 303
Cdd:TIGR02168 390 QLELQIASLNNEIERLEAR----LERLEDR-----RERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLE 460
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 304 ARDESIKKLLEMLQSKGLSAKateedhertRRLAEAEMHVHHLESLLEQKEKENNMLREEMHRRFENAPDSAKTKALQTV 383
Cdd:TIGR02168 461 EALEELREELEEAEQALDAAE---------RELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISV 531
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 384 IEMKDSKISSmerglrDLEEEIQMLKSNGALSSEEREEEMKQMEVYRSH---------------SKFMKNKIGQVKQELS 448
Cdd:TIGR02168 532 DEGYEAAIEA------ALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTflpldsikgteiqgnDREILKNIEGFLGVAK 605
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 449 RKDTELLALQTKLETLTNQF---SDSKQHIEVLKEslTAKEQRAAILQTEVDALRLRL----EEKETMLNKKTKQIQDMA 521
Cdd:TIGR02168 606 DLVKFDPKLRKALSYLLGGVlvvDDLDNALELAKK--LRPGYRIVTLDGDLVRPGGVItggsAKTNSSILERRREIEELE 683
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 522 EEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTI 601
Cdd:TIGR02168 684 EKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEI 763
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 602 ERLKEQRDrderEKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIALEQKKEE 681
Cdd:TIGR02168 764 EELEERLE----EAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERR 839
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 682 CLKMESQLKkaheatlearaspEMSDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKDQ 761
Cdd:TIGR02168 840 LEDLEEQIE-------------ELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELREL 906
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 762 NKKVANLKHkeqvEKKKSAQMLEEARRREDSLsdssqqlqdslrkkDDRIEELEEALRESVQITAEremvlaqeesartN 841
Cdd:TIGR02168 907 ESKRSELRR----ELEELREKLAQLELRLEGL--------------EVRIDNLQERLSEEYSLTLE-------------E 955
|
730 740
....*....|....*....|....*.
gi 1907170192 842 AEKQVEELLMAMEKVKQELESMKAKL 867
Cdd:TIGR02168 956 AEALENKIEDDEEEARRRLKRLENKI 981
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
153-946 |
1.75e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 72.02 E-value: 1.75e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 153 DLQTQLKEVLRENDLLRK---DVEVKESKLSSSMNSIKTFWSPELKKERALRKDEASKItiwKEQYRVVQEENQHMQMTI 229
Cdd:TIGR02169 234 ALERQKEAIERQLASLEEeleKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRV---KEKIGELEAEIASLERSI 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 230 QALQDELR-IQRDLNQLFQQ-DSSSRTGEPCVAELTEENFQR--LHAEHERQAKELFLLRKTLEEMELRIETQKQTLNAR 305
Cdd:TIGR02169 311 AEKERELEdAEERLAKLEAEiDKLLAEIEELEREIEEERKRRdkLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDY 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 306 DESIKKLL-EMLQSKGLSAKATEEDHERTRRLAEAEMHVHHLESLLEQKEKENNMLREEMHRRFENAPD-SAKTKALQTV 383
Cdd:TIGR02169 391 REKLEKLKrEINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQlAADLSKYEQE 470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 384 IEMKDSKISSMERGLRDLEEEIQMLKSNGALSSEEREEEMKQMEVYRSHskfMKNKIGQVKQELSRKDTELLALQTKLET 463
Cdd:TIGR02169 471 LYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKAS---IQGVHGTVAQLGSVGERYATAIEVAAGN 547
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 464 LTNQF-----SDSKQHIEVLKESltaKEQRAAILQTEvdalRLRLEEKETMLNKKTKQIQ---DMAE-EKGTQAGEIHDL 534
Cdd:TIGR02169 548 RLNNVvveddAVAKEAIELLKRR---KAGRATFLPLN----KMRDERRDLSILSEDGVIGfavDLVEfDPKYEPAFKYVF 620
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 535 KDML---DVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRD 611
Cdd:TIGR02169 621 GDTLvveDIEAARRLMGKYRMVTLEGELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRI 700
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 612 ER---EKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQ 688
Cdd:TIGR02169 701 ENrldELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEA 780
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 689 LkkaheATLEARASPEmsdRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVANL 768
Cdd:TIGR02169 781 L-----NDLEARLSHS---RIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSI 852
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 769 KHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMvlaqeesartnAEKQVEE 848
Cdd:TIGR02169 853 EKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEK-----------KRKRLSE 921
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 849 LLMAMEKVKQELESMKAKLSSTQQSLAEkETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQE 928
Cdd:TIGR02169 922 LKAKLEALEEELSEIEDPKGEDEEIPEE-ELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEE 1000
|
810
....*....|....*...
gi 1907170192 929 EVAALKREKDRLVQQLKQ 946
Cdd:TIGR02169 1001 ERKAILERIEEYEKKKRE 1018
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
156-940 |
2.37e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 71.63 E-value: 2.37e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 156 TQLKEVLRENDLLRKDVEVKESKLSSSMNSIKTFWSpELKKERALRKDEASKIT-IWKEQYRVVQEENQHMQMTIQALQD 234
Cdd:TIGR02168 235 EELREELEELQEELKEAEEELEELTAELQELEEKLE-ELRLEVSELEEEIEELQkELYALANEISRLEQQKQILRERLAN 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 235 ELRIQRDLNQLFQQDSSSRTGEPCVAELTEENFQRLHAEHERQAKELFLLRKTLEEMELRIET----------------- 297
Cdd:TIGR02168 314 LERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEEleeqletlrskvaqlel 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 298 QKQTLNARDESIKKLLEMLQSKglSAKATEEDHERTRRLAEAEMHVHHLESLLEQKEKENNMLREEMHRrfenapdsAKT 377
Cdd:TIGR02168 394 QIASLNNEIERLEARLERLEDR--RERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLE--------EAL 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 378 KALQTVIEMKDSKISSMERGLRDLEEEIQMLKsngalSSEEREEEMKQMEVYRSHSKFMKNKIGQVKQELSRKDTEL-LA 456
Cdd:TIGR02168 464 EELREELEEAEQALDAAERELAQLQARLDSLE-----RLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYeAA 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 457 LQTKLET-----LTNQFSDSKQHIEVLKESltaKEQRAAILqtEVDALRLRLEEKETMlnkktkqiqdmaEEKGTQAGEI 531
Cdd:TIGR02168 539 IEAALGGrlqavVVENLNAAKKAIAFLKQN---ELGRVTFL--PLDSIKGTEIQGNDR------------EILKNIEGFL 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 532 HDLKDMLDVKERKVNVLQ------KKIENLQEQLRDKEKqmSSLKERVKSLQAD-----------TTNTDTALTTLEEAL 594
Cdd:TIGR02168 602 GVAKDLVKFDPKLRKALSyllggvLVVDDLDNALELAKK--LRPGYRIVTLDGDlvrpggvitggSAKTNSSILERRREI 679
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 595 ADKERTIERLKEQrdrdEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIA 674
Cdd:TIGR02168 680 EELEEKIEELEEK----IAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKE 755
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 675 LEQKKEECLKMESQLKKAHEATLEARAspemsdRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAEL 754
Cdd:TIGR02168 756 LTELEAEIEELEERLEEAEEELAEAEA------EIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESL 829
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 755 ERQVKDQnkkvanlkhkeqvekkksAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQ 834
Cdd:TIGR02168 830 ERRIAAT------------------ERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALAL 891
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 835 EESARTNAEKQVEEllmaMEKVKQELEsmkAKLSSTQQSLAEKETHLTNLRAeRRKHLEEVLEMKQEALLAAISEKDANI 914
Cdd:TIGR02168 892 LRSELEELSEELRE----LESKRSELR---RELEELREKLAQLELRLEGLEV-RIDNLQERLSEEYSLTLEEAEALENKI 963
|
810 820
....*....|....*....|....*.
gi 1907170192 915 ALLElssskKKTQEEVAALKREKDRL 940
Cdd:TIGR02168 964 EDDE-----EEARRRLKRLENKIKEL 984
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
350-843 |
6.99e-12 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 69.68 E-value: 6.99e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 350 LEQKEKEnnmLREEMHRRFENAPDSAKTK-ALQTVIEMKDSKISSMErglrDLEEEIQMLKSNGALSSEEREEEMKQMEV 428
Cdd:PRK02224 211 LESELAE---LDEEIERYEEQREQARETRdEADEVLEEHEERREELE----TLEAEIEDLRETIAETEREREELAEEVRD 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 429 YRSHSKFMKNKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKET 508
Cdd:PRK02224 284 LRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELRE 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 509 MLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALT 588
Cdd:PRK02224 364 EAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVE 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 589 TLEEALA-----------DKERTIERLKEQRDRDErEKQEEIDTYKKDLKDLREKVSLLQgDLSEKEASLLDIKEHASSL 657
Cdd:PRK02224 444 EAEALLEagkcpecgqpvEGSPHVETIEEDRERVE-ELEAELEDLEEEVEEVEERLERAE-DLVEAEDRIERLEERREDL 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 658 ASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEAR-ASPEMSDRIQQLEREISRYKDESSKaqteVDRLLEI 736
Cdd:PRK02224 522 EELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEeEAEEAREEVAELNSKLAELKERIES----LERIRTL 597
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 737 LKEVEN------EKNDKDKKIAELERQVKDQNKkvANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDR 810
Cdd:PRK02224 598 LAAIADaedeieRLREKREALAELNDERRERLA--EKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREE 675
|
490 500 510 520
....*....|....*....|....*....|....*....|....*..
gi 1907170192 811 --------------IEELEEaLRESVQITAEREMVLaqeESARTNAE 843
Cdd:PRK02224 676 rddlqaeigaveneLEELEE-LRERREALENRVEAL---EALYDEAE 718
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
344-867 |
8.19e-12 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 69.66 E-value: 8.19e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 344 HHLESLLEQKEKENNMLREEMHRRFEnapdsaKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSSEEREEEM 423
Cdd:TIGR04523 200 ELLLSNLKKKIQKNKSLESQISELKK------QNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQ 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 424 KQMEVYRSHSKFMKNKIGQVKQELS------------RKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAI 491
Cdd:TIGR04523 274 KELEQNNKKIKELEKQLNQLKSEISdlnnqkeqdwnkELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTN 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 492 LQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKE 571
Cdd:TIGR04523 354 SESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKE 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 572 RVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEK---EASLL 648
Cdd:TIGR04523 434 TIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKkelEEKVK 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 649 DIKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKaheATLEARASpEMSDRIQQLEREISRYKDESSKAQT 728
Cdd:TIGR04523 514 DLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKK---ENLEKEID-EKNKEIEELKQTQKSLKKKQEEKQE 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 729 EVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKK-------VANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQ 801
Cdd:TIGR04523 590 LIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKEneklssiIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIK 669
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907170192 802 DSLRKKDDRIEELEEALRESVQITAER--EMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKL 867
Cdd:TIGR04523 670 ESKTKIDDIIELMKDWLKELSLHYKKYitRMIRIKDLPKLEEKYKEIEKELKKLDEFSKELENIIKNF 737
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
387-953 |
1.33e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 69.40 E-value: 1.33e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 387 KDSKISSMERGLRD--LEEEIQMLKSNGALSSEEREEEMKQMEVYRSHSKFMKNKIGQVKQELSRKDTELLALQTKLETL 464
Cdd:PTZ00121 1077 KDFDFDAKEDNRADeaTEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEI 1156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 465 TNQFSDSKQHIEVLK--ESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAE-EKGTQAGEIHDLKDMLDVK 541
Cdd:PTZ00121 1157 ARKAEDARKAEEARKaeDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEaRKAEDAKKAEAVKKAEEAK 1236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 542 ERKVNVLQ-KKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEAlaDKERTIERLKEQRDRDEREKQEEID 620
Cdd:PTZ00121 1237 KDAEEAKKaEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEK--KKADEAKKAEEKKKADEAKKKAEEA 1314
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 621 TYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEAR 700
Cdd:PTZ00121 1315 KKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKAD 1394
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 701 ASPEMSDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVANLKHKEQvEKKKSA 780
Cdd:PTZ00121 1395 EAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAE-EAKKAD 1473
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 781 QMLEEArrREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAqEESARTNAEKQVEELLMAMEKVK--- 857
Cdd:PTZ00121 1474 EAKKKA--EEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKA-DEAKKAEEAKKADEAKKAEEKKKade 1550
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 858 ----QELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEvlEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAAL 933
Cdd:PTZ00121 1551 lkkaEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEE--ARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKA 1628
|
570 580
....*....|....*....|
gi 1907170192 934 KREKDRLVQQLKQQTQNRMK 953
Cdd:PTZ00121 1629 EEEKKKVEQLKKKEAEEKKK 1648
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
460-1000 |
8.32e-11 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 66.22 E-value: 8.32e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 460 KLETLTNQFSDSKQHIE-VLKESLTAKEQ-RAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDM 537
Cdd:PRK02224 163 KLEEYRERASDARLGVErVLSDQRGSLDQlKAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEV 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 538 LDVKERK---VNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALttlEEALADKERT---IERLKEQRDRD 611
Cdd:PRK02224 243 LEEHEERreeLETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEER---DDLLAEAGLDdadAEAVEARREEL 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 612 EREKQEeidtykkdlkdlrekvslLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLeialeqkKEECLKMESQLKK 691
Cdd:PRK02224 320 EDRDEE------------------LRDRLEECRVAAQAHNEEAESLREDADDLEERAEEL-------REEAAELESELEE 374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 692 AHEATLEARaspemsDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVANLKH- 770
Cdd:PRK02224 375 AREAVEDRR------EEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEAl 448
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 771 ---------KEQVEKKKSAQMLEEARRREDSLSDSSQQLQD-------------SLRKKDDRIEELEEALRESVQITAER 828
Cdd:PRK02224 449 leagkcpecGQPVEGSPHVETIEEDRERVEELEAELEDLEEeveeveerleraeDLVEAEDRIERLEERREDLEELIAER 528
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 829 EMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLrAERRKHLEEVlemkqEALLAAIS 908
Cdd:PRK02224 529 RETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAEL-KERIESLERI-----RTLLAAIA 602
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 909 EKDANIALLElssSKKKTQEEVAALKREKdrlvqqlKQQTQNRMKLMADNYEDDHFRSSRSNQTNHKPSPDQIIQPLLEL 988
Cdd:PRK02224 603 DAEDEIERLR---EKREALAELNDERRER-------LAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDEL 672
|
570
....*....|..
gi 1907170192 989 DQNRSKLKLYIG 1000
Cdd:PRK02224 673 REERDDLQAEIG 684
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
275-876 |
2.41e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 64.70 E-value: 2.41e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 275 ERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLSAKATEEDHERTRRLAEAEMHVHHLESLLEQKE 354
Cdd:PRK03918 227 EKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYL 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 355 KENNMLREEMHRRfenapdSAKTKALQTVIEMKDSKISSMERgLRDLEEEIQMLKSNGALSSEEREEEMKQMEVYRSHSK 434
Cdd:PRK03918 307 DELREIEKRLSRL------EEEINGIEERIKELEEKEERLEE-LKKKLKELEKRLEELEERHELYEEAKAKKEELERLKK 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 435 FMKNK-IGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLtaKEQRAAILQTEVDALRLRLEEKETMLNKK 513
Cdd:PRK03918 380 RLTGLtPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAI--EELKKAKGKCPVCGRELTEEHRKELLEEY 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 514 TKQIQDMAEEKGTqageihdlkdmLDVKERKVNVLQKKIENlqeqLRDKEKQMSSLKErvkslqadttntdtalttleea 593
Cdd:PRK03918 458 TAELKRIEKELKE-----------IEEKERKLRKELRELEK----VLKKESELIKLKE---------------------- 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 594 ladkerTIERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEhasslassgLKKdsRLKTLEI 673
Cdd:PRK03918 501 ------LAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEE---------LKK--KLAELEK 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 674 ALEQKKEECLKMESQLKKAHEATLEaraspEMSDRIQQLEREISRYKdESSKAQTEVDRLLEILKEVENEKNDKDKKIAE 753
Cdd:PRK03918 564 KLDELEEELAELLKELEELGFESVE-----ELEERLKELEPFYNEYL-ELKDAEKELEREEKELKKLEEELDKAFEELAE 637
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 754 LERQVKDQNKKVanlkhkEQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALREsvqitaeremvLA 833
Cdd:PRK03918 638 TEKRLEELRKEL------EELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEK-----------LK 700
|
570 580 590 600
....*....|....*....|....*....|....*....|....
gi 1907170192 834 QEESARTNAEKQVEELLMAMEKVKQELESMKA-KLSSTQQSLAE 876
Cdd:PRK03918 701 EELEEREKAKKELEKLEKALERVEELREKVKKyKALLKERALSK 744
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
392-946 |
4.20e-10 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 64.37 E-value: 4.20e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 392 SSMERGLRDLEEEIQMLKsnGALSSEEREEEMKQMEVYRSHSKFMKNKIGQVKQELSRKDTELLALQTKLETLTNQFSDS 471
Cdd:pfam15921 220 SAISKILRELDTEISYLK--GRIFPVEDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSI 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 472 KQHIEVLKESltAKEQRA------AILQTEVDALRLRLEEKETMLNKKTKQIQ------------------DMAEEKGTQ 527
Cdd:pfam15921 298 QSQLEIIQEQ--ARNQNSmymrqlSDLESTVSQLRSELREAKRMYEDKIEELEkqlvlanseltearterdQFSQESGNL 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 528 AGEIHDLKDMLDVKERKVNVLQKK--------------IENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTleeA 593
Cdd:pfam15921 376 DDQLQKLLADLHKREKELSLEKEQnkrlwdrdtgnsitIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMA---A 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 594 LADKERTIERLKEQRDRDEREKQ------EEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASS---GLKK 664
Cdd:pfam15921 453 IQGKNESLEKVSSLTAQLESTKEmlrkvvEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRvdlKLQE 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 665 DSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASPE-MSDRIQQLEREISRYKDESSKAQTEV-DRLLEiLKEVEN 742
Cdd:pfam15921 533 LQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIEnMTQLVGQHGRTAGAMQVEKAQLEKEInDRRLE-LQEFKI 611
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 743 EKNDKDKKIAELERQVKD---QNKKVANLKHKE----QVEKKKSAQMLEE---ARRREDSLSDSSQQLQDSLRKKDDRIE 812
Cdd:pfam15921 612 LKDKKDAKIRELEARVSDlelEKVKLVNAGSERlravKDIKQERDQLLNEvktSRNELNSLSEDYEVLKRNFRNKSEEME 691
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 813 ELEEALRESVQiTAEREmvLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHL 892
Cdd:pfam15921 692 TTTNKLKMQLK-SAQSE--LEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLK 768
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....
gi 1907170192 893 EEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQ 946
Cdd:pfam15921 769 EEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAE 822
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
219-910 |
8.13e-10 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 63.06 E-value: 8.13e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 219 QEENQHMQMTIQALQDELRIQRDLNQLFQQDSSSRTGEPCVAELTEENFQRlhaeheRQAKELFLLRKTLEEmelrIETQ 298
Cdd:TIGR00618 239 QQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRA------RKAAPLAAHIKAVTQ----IEQQ 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 299 KQTLNARDESIKKLLEMLQSKGLSAKATEEDHERTRRLaeaEMHVHHLESLLEQKEKENNMLREEMHRRFEnapDSAKTK 378
Cdd:TIGR00618 309 AQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRL---LQTLHSQEIHIRDAHEVATSIREISCQQHT---LTQHIH 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 379 ALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSSEEREEEM---KQMEVYRSHSKFMKNKIGQVKQELSRKDTELL 455
Cdd:TIGR00618 383 TLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAhakKQQELQQRYAELCAAAITCTAQCEKLEKIHLQ 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 456 ALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAailqtevdalrLRLEEKETMLNKKTKQIqdmaEEKGTQAGEIHDLK 535
Cdd:TIGR00618 463 ESAQSLKEREQQLQTKEQIHLQETRKKAVVLARL-----------LELQEEPCPLCGSCIHP----NPARQDIDNPGPLT 527
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 536 DMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREK 615
Cdd:TIGR00618 528 RRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAE 607
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 616 QeeidtyKKDLKDLREKVSLlqgdlsEKEASLLDIKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEA 695
Cdd:TIGR00618 608 D------MLACEQHALLRKL------QPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELL 675
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 696 TLEARASPEMSDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVANLKHKEQVE 775
Cdd:TIGR00618 676 ASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTV 755
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 776 KKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEremvlaqeesARTNAEKQVEELLMAMEK 855
Cdd:TIGR00618 756 LKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAE----------IGQEIPSDEDILNLQCET 825
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*
gi 1907170192 856 VKQELESMKAKLSSTQQSLAEKETHLTNLrAERRKHLEEVleMKQEALLAAISEK 910
Cdd:TIGR00618 826 LVQEEEQFLSRLEEKSATLGEITHQLLKY-EECSKQLAQL--TQEQAKIIQLSDK 877
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
268-878 |
9.65e-10 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 63.14 E-value: 9.65e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 268 QRLHAEHERQAKELFLLRKTLEEMELRIETQK-QTLNARDESIKKL-LEMLQSKGLSAKATEEDHERTRRLAEAEMHVHH 345
Cdd:TIGR00606 464 QQLEGSSDRILELDQELRKAERELSKAEKNSLtETLKKEVKSLQNEkADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKD 543
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 346 LESLLEQKEKENNMLREEMhrrFENAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSSEEREEEMKQ 425
Cdd:TIGR00606 544 KMDKDEQIRKIKSRHSDEL---TSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQ 620
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 426 MEVYRSH------SKFMKNKIGQVKQEL--SRKDTELLALQTKL--ETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTE 495
Cdd:TIGR00606 621 LSSYEDKlfdvcgSQDEESDLERLKEEIekSSKQRAMLAGATAVysQFITQLTDENQSCCPVCQRVFQTEAELQEFISDL 700
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 496 VDALRL---RLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKER 572
Cdd:TIGR00606 701 QSKLRLapdKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPE 780
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 573 VKSLQADTTNTDTALTTLEEaLADKERTIERLKEQRD------------RDEREKQEEIDTYKKDLKDLREKVSLLQGDL 640
Cdd:TIGR00606 781 EESAKVCLTDVTIMERFQME-LKDVERKIAQQAAKLQgsdldrtvqqvnQEKQEKQHELDTVVSKIELNRKLIQDQQEQI 859
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 641 SEKEASLLDIKEHASSLASSGlkkdSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASPEmsDRIQQLEREISRYK 720
Cdd:TIGR00606 860 QHLKSKTNELKSEKLQIGTNL----QRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLE--KDQQEKEELISSKE 933
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 721 DESSKAQTEVDRLLEILKEVENEKNDKDKKIAE-LERQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQ 799
Cdd:TIGR00606 934 TSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDgKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQ 1013
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 800 ---LQDSL--RKKDDRIEELEEALRE------SVQITAEREMVLAQEESARTNAEKQVeELLMAMEKVKQELESMKAKLS 868
Cdd:TIGR00606 1014 erwLQDNLtlRKRENELKEVEEELKQhlkemgQMQVLQMKQEHQKLEENIDLIKRNHV-LALGRQKGYEKEIKHFKKELR 1092
|
650
....*....|
gi 1907170192 869 STQQSLAEKE 878
Cdd:TIGR00606 1093 EPQFRDAEEK 1102
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
706-946 |
1.17e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 61.70 E-value: 1.17e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 706 SDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKvanlkhkeqvekkksaqmLEE 785
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQE------------------LAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 786 ARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAErEMVLAQEESArtnaekQVEELLMAMEKVKQELESMKA 865
Cdd:COG4942 81 LEAELAELEKEIAELRAELEAQKEELAELLRALYRLGRQPPL-ALLLSPEDFL------DAVRRLQYLKYLAPARREQAE 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 866 KLSSTQQSLAEKETHLTNLRAERRKHLEEvLEMKQEALLAAISEKDANIAllELSSSKKKTQEEVAALKREKDRLVQQLK 945
Cdd:COG4942 154 ELRADLAELAALRAELEAERAELEALLAE-LEEERAALEALKAERQKLLA--RLEKELAELAAELAELQQEAEELEALIA 230
|
.
gi 1907170192 946 Q 946
Cdd:COG4942 231 R 231
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
437-645 |
1.44e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 61.32 E-value: 1.44e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 437 KNKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQ 516
Cdd:COG4942 33 QQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLRA 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 517 IQDMAEEKGTQ----AGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEE 592
Cdd:COG4942 113 LYRLGRQPPLAlllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEA 192
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1907170192 593 ALADKERTIERLKeqrdRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEA 645
Cdd:COG4942 193 LKAERQKLLARLE----KELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
288-864 |
1.10e-08 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 59.53 E-value: 1.10e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 288 LEEMELRIETQKQTLNARDESIKKLLEMLQSKGL---SAKATEEDHERTRRLAEAEmhVHHLESLLEQKEKENNMLREEM 364
Cdd:PRK01156 164 LERNYDKLKDVIDMLRAEISNIDYLEEKLKSSNLeleNIKKQIADDEKSHSITLKE--IERLSIEYNNAMDDYNNLKSAL 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 365 HRrfenapdsakTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSngalsSEEREEEMKQMEVYRSHSKF-----MKNK 439
Cdd:PRK01156 242 NE----------LSSLEDMKNRYESEIKTAESDLSMELEKNNYYKE-----LEERHMKIINDPVYKNRNYIndyfkYKND 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 440 IGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKEsltakeqraailQTEVDALRLRLEEKETMLNKKTKQIQD 519
Cdd:PRK01156 307 IENKKQILSNIDAEINKYHAIIKKLSVLQKDYNDYIKKKSR------------YDDLNNQILELEGYEMDYNSYLKSIES 374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 520 MAEEKGTQAGEIHDLKD----MLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEE--- 592
Cdd:PRK01156 375 LKKKIEEYSKNIERMSAfiseILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGqsv 454
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 593 ----ALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQgdlseKEASLLDIKEHASSLASSGLKKDSR- 667
Cdd:PRK01156 455 cpvcGTTLGEEKSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLK-----KRKEYLESEEINKSINEYNKIESARa 529
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 668 -LKTLEIALEQKKEECLKME---SQLKKAHEATLEARASPEMSDRIQ----QLEREISRYKDESSKAQTEVDRLLEILKE 739
Cdd:PRK01156 530 dLEDIKIKINELKDKHDKYEeikNRYKSLKLEDLDSKRTSWLNALAVisliDIETNRSRSNEIKKQLNDLESRLQEIEIG 609
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 740 VENEKNDKDKKIAELERQVKDQNKKVanlkhKEQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALR 819
Cdd:PRK01156 610 FPDDKSYIDKSIREIENEANNLNNKY-----NEIQENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLK 684
|
570 580 590 600
....*....|....*....|....*....|....*....|....*
gi 1907170192 820 ESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMK 864
Cdd:PRK01156 685 KSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLESMK 729
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
259-943 |
1.27e-08 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 59.21 E-value: 1.27e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 259 VAELTEENFQRLHAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLSAKATEEDHERTRRLAE 338
Cdd:TIGR00618 181 LALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQ 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 339 AEMHVHHLESLLEQKEKENNMLREEMHRRFENAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSSEE 418
Cdd:TIGR00618 261 LLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSI 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 419 REEEMKQMEVYRSHSKFMKnkigQVKQELSRKdtELLALQTKLEtltnqfsdskQHIEVLKESLTAKEQRAAILQTEVDA 498
Cdd:TIGR00618 341 EEQRRLLQTLHSQEIHIRD----AHEVATSIR--EISCQQHTLT----------QHIHTLQQQKTTLTQKLQSLCKELDI 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 499 LRLRLEEKETMLNKKTKQIQDMAEEKGTQageihdlkdmldvkerkvnVLQKKIENLQEQLRDKEKQMSSLKERVKSLQA 578
Cdd:TIGR00618 405 LQREQATIDTRTSAFRDLQGQLAHAKKQQ-------------------ELQQRYAELCAAAITCTAQCEKLEKIHLQESA 465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 579 DTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLA 658
Cdd:TIGR00618 466 QSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEE 545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 659 SSGLKKDSRLKTLEIALEQkkeeclkMESQLKKAHEATLEARASPEMSDRIQQLEREISRYKDESSKAQTEVDRLLEILK 738
Cdd:TIGR00618 546 DVYHQLTSERKQRASLKEQ-------MQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALL 618
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 739 EVENEKNDKDKKIAELERQVKDQNKKVANLkHKEQVEkkksaqmLEEARRREDSLSDSSQQLQdslrKKDDRIEELEEAL 818
Cdd:TIGR00618 619 RKLQPEQDLQDVRLHLQQCSQELALKLTAL-HALQLT-------LTQERVREHALSIRVLPKE----LLASRQLALQKMQ 686
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 819 RESVQITAEREMvLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEM 898
Cdd:TIGR00618 687 SEKEQLTYWKEM-LAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFN 765
|
650 660 670 680
....*....|....*....|....*....|....*....|....*
gi 1907170192 899 KQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQ 943
Cdd:TIGR00618 766 NNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQ 810
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
480-732 |
2.14e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 57.47 E-value: 2.14e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 480 ESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQL 559
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 560 RDKEKQmssLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDerekQEEIDTYKKDLKDLREKVSLLQGD 639
Cdd:COG4942 100 EAQKEE---LAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPAR----REQAEELRADLAELAALRAELEAE 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 640 LSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKkaheatlearaspEMSDRIQQLEREISRY 719
Cdd:COG4942 173 RAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAE-------------ELEALIARLEAEAAAA 239
|
250
....*....|...
gi 1907170192 720 KDESSKAQTEVDR 732
Cdd:COG4942 240 AERTPAAGFAALK 252
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
176-645 |
2.45e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 58.13 E-value: 2.45e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 176 ESKLSSSMNSIKTFwspELKKERAL-RKDEASKITIWKEQYR----VVQEENQHMQMTI-------QALQDELRIQRDLN 243
Cdd:PRK02224 212 ESELAELDEEIERY---EEQREQAReTRDEADEVLEEHEERReeleTLEAEIEDLRETIaetererEELAEEVRDLRERL 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 244 QLFQQDSSSRTGEpcvAELTEENFQRLHAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEmlQSKGLSA 323
Cdd:PRK02224 289 EELEEERDDLLAE---AGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEE--RAEELRE 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 324 KATEEDHErtrrLAEAEMHVHHLESLLEQKEKENNMLREemhrRFENAPDS--AKTKALQTVIEMKD---SKISSMERGL 398
Cdd:PRK02224 364 EAAELESE----LEEAREAVEDRREEIEELEEEIEELRE----RFGDAPVDlgNAEDFLEELREERDelrEREAELEATL 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 399 RDLEEEI----------------QMLK-SNGALSSEEREEEMKQMEVYRSHskfMKNKIGQVKQELSRKdTELLALQTKL 461
Cdd:PRK02224 436 RTARERVeeaealleagkcpecgQPVEgSPHVETIEEDRERVEELEAELED---LEEEVEEVEERLERA-EDLVEAEDRI 511
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 462 ETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVK 541
Cdd:PRK02224 512 ERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESL 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 542 ERKVNV-------------LQKKIENLQEQLRDKEKQMSSLKERVKSLQADT-----TNTDTALTTLEEALADKERTIER 603
Cdd:PRK02224 592 ERIRTLlaaiadaedeierLREKREALAELNDERRERLAEKRERKRELEAEFdeariEEAREDKERAEEYLEQVEEKLDE 671
|
490 500 510 520
....*....|....*....|....*....|....*....|....*...
gi 1907170192 604 LKEQRDRDE------REKQEEIDTYKKDLKDLREKVSLLQGDLSEKEA 645
Cdd:PRK02224 672 LREERDDLQaeigavENELEELEELRERREALENRVEALEALYDEAEE 719
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
273-722 |
3.47e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 57.77 E-value: 3.47e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 273 EHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLSAKATEEDHERTRRLAEAEMHVHHLESLLEQ 352
Cdd:PRK03918 294 EYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEE 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 353 KEKENNMLREEMHRRFENAPDSAKTKALQTVIEMKD--SKISSMERGLRDLEEEIQMLKSN-------GALSSEEREEEM 423
Cdd:PRK03918 374 LERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKitARIGELKKEIKELKKAIEELKKAkgkcpvcGRELTEEHRKEL 453
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 424 kqMEVYRSHSKfmknKIGQVKQELSRKDTELLALQTKLETLTNQFSdskqhiEVLKESLTAKEQRAAILQTEVdalrLRL 503
Cdd:PRK03918 454 --LEEYTAELK----RIEKELKEIEEKERKLRKELRELEKVLKKES------ELIKLKELAEQLKELEEKLKK----YNL 517
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 504 EEketmLNKKTKQIQDMAEEKGTQAGEIHDLKDMLdvkeRKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNT 583
Cdd:PRK03918 518 EE----LEKKAEEYEKLKEKLIKLKGEIKSLKKEL----EKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEE 589
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 584 DTALTTLEE-------ALADKERTIERLKEQRDRDERE---KQEEIDTYKKDLKDLREKVSLLQGDLSEKEASllDIKEH 653
Cdd:PRK03918 590 LEERLKELEpfyneylELKDAEKELEREEKELKKLEEEldkAFEELAETEKRLEELRKELEELEKKYSEEEYE--ELREE 667
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907170192 654 ASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASPEMSDRIQQLEREISRYKDE 722
Cdd:PRK03918 668 YLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVEELREKVKKYKAL 736
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
388-944 |
4.69e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.39 E-value: 4.69e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 388 DSKIssmERGLRDLEEEIQMLKSNGALSSEEREEeMKQMEVYRSHS-KFMKNKIGQVKQELSRKDTELLALQTKLETLTN 466
Cdd:TIGR02169 169 DRKK---EKALEELEEVEENIERLDLIIDEKRQQ-LERLRREREKAeRYQALLKEKREYEGYELLKEKEALERQKEAIER 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 467 QFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEK--ETMLNKKTK--------------------QIQDMAEEK 524
Cdd:TIGR02169 245 QLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLgeEEQLRVKEKigeleaeiaslersiaekerELEDAEERL 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 525 GTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERL 604
Cdd:TIGR02169 325 AKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINEL 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 605 KEQRDRDEREKQ---EEIDTYKKDLKDLREKVSLLQGD-------LSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIA 674
Cdd:TIGR02169 405 KRELDRLQEELQrlsEELADLNAAIAGIEAKINELEEEkedkaleIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKE 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 675 LEQKKEECLKMESQLKKAHEATLEARASPEM-SDRIQ---QLEREISRYKDESSKA--------------QTEVD--RLL 734
Cdd:TIGR02169 485 LSKLQRELAEAEAQARASEERVRGGRAVEEVlKASIQgvhGTVAQLGSVGERYATAievaagnrlnnvvvEDDAVakEAI 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 735 EILKEVE---------NEKNDK----------------------DKKIAELERQVKDQNKKVANLKHKEQVEKK------ 777
Cdd:TIGR02169 565 ELLKRRKagratflplNKMRDErrdlsilsedgvigfavdlvefDPKYEPAFKYVFGDTLVVEDIEAARRLMGKyrmvtl 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 778 ------KSAQMLEEARRREDSLSDSSQQLqDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLM 851
Cdd:TIGR02169 645 egelfeKSGAMTGGSRAPRGGILFSRSEP-AELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEK 723
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 852 AMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAErRKHLEEVLEMKQEAlLAAISEKDANIALLELSSSKKKTQEEVA 931
Cdd:TIGR02169 724 EIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSE-LKELEARIEELEED-LHKLEEALNDLEARLSHSRIPEIQAELS 801
|
650
....*....|...
gi 1907170192 932 ALKREKDRLVQQL 944
Cdd:TIGR02169 802 KLEEEVSRIEARL 814
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
193-956 |
4.82e-08 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 57.29 E-value: 4.82e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 193 ELKKERALRKDEASKITIWKEQYRVVQEENQHMQMTIQALQDELRIQRDLNQLFQQDSSS-------RTGEPCVAELTEE 265
Cdd:pfam02463 203 KEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKeeeklaqVLKENKEEEKEKK 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 266 NFQRLHAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLSAKATEEDHERTRRLAEAEMHVHH 345
Cdd:pfam02463 283 LQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELE 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 346 LESLLEQKEKENNMLREEMHRRFENAPDSAK--TKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSSEEREEEM 423
Cdd:pfam02463 363 KLQEKLEQLEEELLAKKKLESERLSSAAKLKeeELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELK 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 424 KQMEVYRSHSKFMKNKIGQVKQ-ELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLR 502
Cdd:pfam02463 443 QGKLTEEKEELEKQELKLLKDElELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGG 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 503 LEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTN 582
Cdd:pfam02463 523 RIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPI 602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 583 TDTALTTLEEALADKERTIERLKEQrDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSGL 662
Cdd:pfam02463 603 LNLAQLDKATLEADEDDKRAKVVEG-ILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQEL 681
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 663 KKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASPEMSDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVEN 742
Cdd:pfam02463 682 QEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEE 761
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 743 EKNDKDKKIAELERQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESV 822
Cdd:pfam02463 762 KEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALE 841
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 823 QITAEREMVLAQEESARTNAEKQVEELLmaMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEA 902
Cdd:pfam02463 842 LKEEQKLEKLAEEELERLEEEITKEELL--QELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEI 919
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....
gi 1907170192 903 LLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQQTQNRMKLMA 956
Cdd:pfam02463 920 EERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELG 973
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
707-932 |
5.39e-08 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 56.38 E-value: 5.39e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 707 DRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVANLKHKEQVEKKKSAQMLEEA 786
Cdd:COG3883 16 PQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARAL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 787 RRREDSLSD-----SSQQLQDSLrkkdDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELlmamEKVKQELE 861
Cdd:COG3883 96 YRSGGSVSYldvllGSESFSDFL----DRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAEL----EALKAELE 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907170192 862 SMKAKLsstQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAA 932
Cdd:COG3883 168 AAKAEL---EAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAA 235
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
536-752 |
6.36e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 55.93 E-value: 6.36e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 536 DMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREK 615
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 616 QEEIDTYKKDLKDL-------REKVSLLQGDLSEKEASLLDIKEHASSLAS--SGLKKD-SRLKTLEIALEQKKEECLKM 685
Cdd:COG4942 100 EAQKEELAELLRALyrlgrqpPLALLLSPEDFLDAVRRLQYLKYLAPARREqaEELRADlAELAALRAELEAERAELEAL 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907170192 686 ESQLKKAHEATLEARAspEMSDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIA 752
Cdd:COG4942 180 LAELEEERAALEALKA--ERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTP 244
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
484-858 |
1.95e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 55.36 E-value: 1.95e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 484 AKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKE 563
Cdd:pfam02463 150 MKPERRLEIEEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYL 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 564 KQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLqgdLSEK 643
Cdd:pfam02463 230 DYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSEL---LKLE 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 644 EASLLDIKEHASSLASSGLKKDSRLKTLEIALEQKKEEclkmESQLKKAHEATLEARASPEMSDRIQQLEREISRYKDES 723
Cdd:pfam02463 307 RRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKEL----KELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLE 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 724 SKAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKvanlKHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQDS 803
Cdd:pfam02463 383 SERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKE----EKKEELEILEEEEESIELKQGKLTEEKEELEKQEL 458
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 1907170192 804 LRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQ 858
Cdd:pfam02463 459 KLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLL 513
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
533-945 |
2.29e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 55.07 E-value: 2.29e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 533 DLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLqadttntDTALTTLEEALADKERTIERLKEQRDRDE 612
Cdd:PRK03918 169 EVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEI-------SSELPELREELEKLEKEVKELEELKEEIE 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 613 rEKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSlassgLKKDSRLKTLEIALEQKKEECLKMESQLKKA 692
Cdd:PRK03918 242 -ELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKE-----LKELKEKAEEYIKLSEFYEEYLDELREIEKR 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 693 HEatlearaspEMSDRIQQLEREISRYKDESSKaqtevdrlleiLKEVENEKNDKDKKIAELERQVKDQNKKVANLKHKE 772
Cdd:PRK03918 316 LS---------RLEEEINGIEERIKELEEKEER-----------LEELKKKLKELEKRLEELEERHELYEEAKAKKEELE 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 773 QVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEealresvQITAEREMVLAQEESART-----NAEKQVE 847
Cdd:PRK03918 376 RLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELK-------KEIKELKKAIEELKKAKGkcpvcGRELTEE 448
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 848 ELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKK--- 924
Cdd:PRK03918 449 HRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEeye 528
|
410 420
....*....|....*....|.
gi 1907170192 925 KTQEEVAALKREKDRLVQQLK 945
Cdd:PRK03918 529 KLKEKLIKLKGEIKSLKKELE 549
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
446-634 |
2.84e-07 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 52.62 E-value: 2.84e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 446 ELSRKDTELLALQTKLETLtnqfsdsKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLnkktKQIQDMAEEKG 525
Cdd:COG1579 11 DLQELDSELDRLEHRLKEL-------PAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEI----EEVEARIKKYE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 526 TQAGEIHDLKDMldvkerkvNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQAdttntdtALTTLEEALADKERTIERLK 605
Cdd:COG1579 80 EQLGNVRNNKEY--------EALQKEIESLKRRISDLEDEILELMERIEELEE-------ELAELEAELAELEAELEEKK 144
|
170 180
....*....|....*....|....*....
gi 1907170192 606 EQRDRDEREKQEEIDTYKKDLKDLREKVS 634
Cdd:COG1579 145 AELDEELAELEAELEELEAEREELAAKIP 173
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
501-940 |
3.34e-07 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 54.52 E-value: 3.34e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 501 LRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADT 580
Cdd:PRK01156 169 DKLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLE 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 581 TNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEID-------------TYKKDLKDLREKVSLLQGDLSEKEASL 647
Cdd:PRK01156 249 DMKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINDpvyknrnyindyfKYKNDIENKKQILSNIDAEINKYHAII 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 648 LDIKEhASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKaheatlearaspemsdrIQQLEREISRYKDESSKAQ 727
Cdd:PRK01156 329 KKLSV-LQKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKS-----------------IESLKKKIEEYSKNIERMS 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 728 TEVDRlleILKEVENEKNDKDKKIAELERQVKDQNKKVANLkhkeQVEKKKSAQMLEEARRREDSLS------------- 794
Cdd:PRK01156 391 AFISE---ILKIQEIDPDAIKKELNEINVKLQDISSKVSSL----NQRIRALRENLDELSRNMEMLNgqsvcpvcgttlg 463
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 795 -DSSQQLQDSLRKKDDRIEE-LEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSstqq 872
Cdd:PRK01156 464 eEKSNHIINHYNEKKSRLEEkIREIEIEVKDIDEKIVDLKKRKEYLESEEINKSINEYNKIESARADLEDIKIKIN---- 539
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907170192 873 SLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEkdanIALLELSSSKKKTQEEVAALKREKDRL 940
Cdd:PRK01156 540 ELKDKHDKYEEIKNRYKSLKLEDLDSKRTSWLNALAV----ISLIDIETNRSRSNEIKKQLNDLESRL 603
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
272-862 |
3.38e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 54.76 E-value: 3.38e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 272 AEHERQAKELFL----LRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLSAKATEEDHERTRRLAEAemhvhhLE 347
Cdd:PTZ00121 1311 AEEAKKADEAKKkaeeAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADA------AK 1384
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 348 SLLEQKEKENNMLR--EEMHRRFENAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSSEEREEEMKQ 425
Cdd:PTZ00121 1385 KKAEEKKKADEAKKkaEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKK 1464
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 426 MEVYRSHSKFMKNKIGQVKQ--ELSRKDTEllaLQTKLETLTNQFSDSKQHIEVLK--ESLTAKEQRAAILQTEVDALRL 501
Cdd:PTZ00121 1465 KAEEAKKADEAKKKAEEAKKadEAKKKAEE---AKKKADEAKKAAEAKKKADEAKKaeEAKKADEAKKAEEAKKADEAKK 1541
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 502 RLEEKETMLNKKTKQIQDMAE-EKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSlkERVKSLQADT 580
Cdd:PTZ00121 1542 AEEKKKADELKKAEELKKAEEkKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKA--EEAKKAEEAK 1619
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 581 TNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASS 660
Cdd:PTZ00121 1620 IKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAE 1699
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 661 GLKKDSRLKTLEIALEQKKEECLKMESQLK-KAHEATLEARASPEMSDRIQQLERE---ISRYKDESSKAQTEVDRLLEI 736
Cdd:PTZ00121 1700 EAKKAEELKKKEAEEKKKAEELKKAEEENKiKAEEAKKEAEEDKKKAEEAKKDEEEkkkIAHLKKEEEKKAEEIRKEKEA 1779
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 737 LKEVENEKNDkDKKIAELERQVKDQNKKVANLkhkeQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEE 816
Cdd:PTZ00121 1780 VIEEELDEED-EKRRMEVDKKIKDIFDNFANI----IEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFEKHKF 1854
|
570 580 590 600
....*....|....*....|....*....|....*....|....*.
gi 1907170192 817 ALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELES 862
Cdd:PTZ00121 1855 NKNNENGEDGNKEADFNKEKDLKEDDEEEIEEADEIEKIDKDDIER 1900
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
344-874 |
3.60e-07 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 54.67 E-value: 3.60e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 344 HHLESLLEQKEKENNMLREEMHR--RFENAPDSA-----------KTKALQTVIEMKD----------SKISSMERGLRD 400
Cdd:TIGR01612 1129 HHIKALEEIKKKSENYIDEIKAQinDLEDVADKAisnddpeeiekKIENIVTKIDKKKniydeikkllNEIAEIEKDKTS 1208
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 401 LEE----EIQMLKSNGALSSEEREEEMKQME-VYRSHSKFMKN--KIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQ 473
Cdd:TIGR01612 1209 LEEvkgiNLSYGKNLGKLFLEKIDEEKKKSEhMIKAMEAYIEDldEIKEKSPEIENEMGIEMDIKAEMETFNISHDDDKD 1288
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 474 HievlkeSLTAKEQRAAILQTEVDALRLRLE-EKETMLNKKTKQIQDMAEEKGTQAGEIH----------------DLKD 536
Cdd:TIGR01612 1289 H------HIISKKHDENISDIREKSLKIIEDfSEESDINDIKKELQKNLLDAQKHNSDINlylneianiynilklnKIKK 1362
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 537 MLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKslqadttnTDTALTTLEEALADKE--RTIERLKEQRDRDERE 614
Cdd:TIGR01612 1363 IIDEVKEYTKEIEENNKNIKDELDKSEKLIKKIKDDIN--------LEECKSKIESTLDDKDidECIKKIKELKNHILSE 1434
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 615 kQEEIDTYKKDLKDLREKVSLLQGDL-------------------SEKEASLLDIKEHASSLASSGLKKDSRLKTLE--- 672
Cdd:TIGR01612 1435 -ESNIDTYFKNADENNENVLLLFKNIemadnksqhilkikkdnatNDHDFNINELKEHIDKSKGCKDEADKNAKAIEknk 1513
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 673 IALEQKKEECLKMES-----------------------QLKKAH-EATLEARASPEmsdRIQQLEREISRYKDESSKAQT 728
Cdd:TIGR01612 1514 ELFEQYKKDVTELLNkysalaiknkfaktkkdseiiikEIKDAHkKFILEAEKSEQ---KIKEIKKEKFRIEDDAAKNDK 1590
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 729 EVDRLLEILKEVENEKNdKDKKIAELERQVKDqnkkvaNLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKD 808
Cdd:TIGR01612 1591 SNKAAIDIQLSLENFEN-KFLKISDIKKKIND------CLKETESIEKKISSFSIDSQDTELKENGDNLNSLQEFLESLK 1663
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907170192 809 DRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKV-KQELESMKAKLSSTQQSL 874
Cdd:TIGR01612 1664 DQKKNIEDKKKELDELDSEIEKIEIDVDQHKKNYEIGIIEKIKEIAIAnKEEIESIKELIEPTIENL 1730
|
|
| RBD-FIP |
pfam09457 |
FIP domain; The FIP domain is the Rab11-binding domain (RBD) at the C-terminus of a family of ... |
1040-1080 |
5.57e-07 |
|
FIP domain; The FIP domain is the Rab11-binding domain (RBD) at the C-terminus of a family of Rab11-interacting proteins (FIPs). The Rab proteins constitute the largest family of small GTPases (>60 members in mammals). Among them Rab11 is a well characterized regulator of endocytic and recycling pathways. Rab11 associates with a broad range of post-Golgi organelles, including recycling endosomes.
Pssm-ID: 462805 [Multi-domain] Cd Length: 41 Bit Score: 46.95 E-value: 5.57e-07
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 1907170192 1040 TQEQLQNELEKVEGDNAELQEFANTILQQIADHCPDILEQV 1080
Cdd:pfam09457 1 SRDELQDALQKQEEENRRLEDYIDNILLRIMEHNPSILEVP 41
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
462-956 |
6.55e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 53.58 E-value: 6.55e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 462 ETLTNQFSDSKQHIEVLKeslTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQageIHDLKDMLDVK 541
Cdd:pfam15921 141 EDLRNQLQNTVHELEAAK---CLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKK---IYEHDSMSTMH 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 542 ERKVNVLQKKIenlqeqLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALadkertierLKEQRDRDErekqEEIDT 621
Cdd:pfam15921 215 FRSLGSAISKI------LRELDTEISYLKGRIFPVEDQLEALKSESQNKIELL---------LQQHQDRIE----QLISE 275
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 622 YKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMesqlkkaheatleara 701
Cdd:pfam15921 276 HEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRM---------------- 339
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 702 speMSDRIQQLEREISRYKDESSKAQTEVDRLLEilkEVENEKNDKDKKIAELERQVKDQNkkVANLKHKEQVEKKKSAQ 781
Cdd:pfam15921 340 ---YEDKIEELEKQLVLANSELTEARTERDQFSQ---ESGNLDDQLQKLLADLHKREKELS--LEKEQNKRLWDRDTGNS 411
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 782 MLEEARRREdsLSDSSQQLQdslrkkddRIEELEEALRESVQITAEREM---------------VLAQEESARTNAEKQV 846
Cdd:pfam15921 412 ITIDHLRRE--LDDRNMEVQ--------RLEALLKAMKSECQGQMERQMaaiqgkneslekvssLTAQLESTKEMLRKVV 481
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 847 EELL---MAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEAllaaisekdaniallelsSSK 923
Cdd:pfam15921 482 EELTakkMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEG------------------DHL 543
|
490 500 510
....*....|....*....|....*....|....*.
gi 1907170192 924 KKTQEEVAALK---REKDRLVQQLKQQTQNRMKLMA 956
Cdd:pfam15921 544 RNVQTECEALKlqmAEKDKVIEILRQQIENMTQLVG 579
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
473-907 |
9.00e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 52.85 E-value: 9.00e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 473 QHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKgtqagEIHDLKDMLDVKERKVNVLQKKI 552
Cdd:COG4717 81 KEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQ-----ELEALEAELAELPERLEELEERL 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 553 ENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLREK 632
Cdd:COG4717 156 EELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENE 235
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 633 VSLLQ--GDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASPEMSDRIQ 710
Cdd:COG4717 236 LEAAAleERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEE 315
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 711 QLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKDQnkkvANLKHKEQVEKKKSAQMLEEARRRe 790
Cdd:COG4717 316 LEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLE----ELEQEIAALLAEAGVEDEEELRAA- 390
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 791 dslsdssQQLQDSLRKKDDRIEELEEALREsvqitAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSST 870
Cdd:COG4717 391 -------LEQAEEYQELKEELEELEEQLEE-----LLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAEL 458
|
410 420 430
....*....|....*....|....*....|....*....
gi 1907170192 871 QQSL--AEKETHLTNLRAERRKHLEEVLEMKQEALLAAI 907
Cdd:COG4717 459 EAELeqLEEDGELAELLQELEELKAELRELAEEWAALKL 497
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
593-826 |
1.22e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.07 E-value: 1.22e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 593 ALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLE 672
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 673 IALEQKKEEclkMESQLKKAHEAtleARASPEM----SDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKD 748
Cdd:COG4942 97 AELEAQKEE---LAELLRALYRL---GRQPPLAlllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907170192 749 KKIAELERQVKDQNKKVANLkhkeQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITA 826
Cdd:COG4942 171 AERAELEALLAELEEERAAL----EALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTP 244
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
542-820 |
1.47e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 52.61 E-value: 1.47e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 542 ERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEAL--ADKERTIERLKEQRDRderekqeeI 619
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIdvASAEREIAELEAELER--------L 680
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 620 DTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLassglkkDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEA 699
Cdd:COG4913 681 DASSDDLAALEEQLEELEAELEELEEELDELKGEIGRL-------EKELEQAEEELDELQDRLEAAEDLARLELRALLEE 753
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 700 RASPEMSDRI-----QQLEREISRYKDESSKAQTEVDRLL-EILKEVENEKNDKDKKIAELE--RQVKDQNKKVANLKHK 771
Cdd:COG4913 754 RFAAALGDAVerelrENLEERIDALRARLNRAEEELERAMrAFNREWPAETADLDADLESLPeyLALLDRLEEDGLPEYE 833
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 1907170192 772 EQVEKKKSAQMleearrrEDSLSDSSQQLQDSLRKKDDRIEELEEALRE 820
Cdd:COG4913 834 ERFKELLNENS-------IEFVADLLSKLRRAIREIKERIDPLNDSLKR 875
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
445-642 |
1.62e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 52.61 E-value: 1.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 445 QELSRKDTELLALQTKLETLtnqfsdskQHIEVLKESLTAKEQRAAILQTEVDALRLrlEEKETMLNKKTKQIQDMAEEK 524
Cdd:COG4913 235 DDLERAHEALEDAREQIELL--------EPIRELAERYAAARERLAELEYLRAALRL--WFAQRRLELLEAELEELRAEL 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 525 GTQAGEIHDLKDMLDVKERKVNVLQ--------KKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALAD 596
Cdd:COG4913 305 ARLEAELERLEARLDALREELDELEaqirgnggDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAA 384
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1907170192 597 KERTIERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSE 642
Cdd:COG4913 385 LRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIAS 430
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
504-943 |
1.76e-06 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 52.03 E-value: 1.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 504 EEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNT 583
Cdd:pfam05483 229 EEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRS 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 584 DTALTTLEEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLK 663
Cdd:pfam05483 309 MSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQK 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 664 KDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASPEMSDRIQQLEREISRYKDESSKAQTEVDRLLEILK----- 738
Cdd:pfam05483 389 KSSELEEMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKtseeh 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 739 ----------EVENEK-------NDKDKKIAELERQVKDQNKKVANLKHKEQ---VEKKKSAQML---EEARRREDSLSD 795
Cdd:pfam05483 469 ylkevedlktELEKEKlknieltAHCDKLLLENKELTQEASDMTLELKKHQEdiiNCKKQEERMLkqiENLEEKEMNLRD 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 796 SSQQLQDSLRKKDD----RIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQ 871
Cdd:pfam05483 549 ELESVREEFIQKGDevkcKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAEN 628
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907170192 872 QSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQ 943
Cdd:pfam05483 629 KQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDKKISEEKLLEEVEKAKAIADEAVKLQKEIDKRCQH 700
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
437-661 |
2.22e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 51.37 E-value: 2.22e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 437 KNKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEeketmlnkktKQ 516
Cdd:COG3883 22 QKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELG----------ER 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 517 IQDMAEEKGT--------QAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALT 588
Cdd:COG3883 92 ARALYRSGGSvsyldvllGSESFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKA 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907170192 589 TLEEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSG 661
Cdd:COG3883 172 ELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 244
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
346-765 |
2.58e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 51.56 E-value: 2.58e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 346 LESLLEQKEKENNMLREEMHRrfenapdsaKTKALQTVIEMKDSK---ISSMERGLRDLEEEIQMLKSngalSSEEREEE 422
Cdd:TIGR04523 347 LKKELTNSESENSEKQRELEE---------KQNEIEKLKKENQSYkqeIKNLESQINDLESKIQNQEK----LNQQKDEQ 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 423 MKQMEvyrshskfmknkigQVKQELSRKDTELLALQTKLET----LTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDA 498
Cdd:TIGR04523 414 IKKLQ--------------QEKELLEKEIERLKETIIKNNSeikdLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINK 479
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 499 LRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSlqa 578
Cdd:TIGR04523 480 IKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKK--- 556
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 579 dttntdtalTTLEEALADKERTIERLKEQRD---RDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHAS 655
Cdd:TIGR04523 557 ---------ENLEKEIDEKNKEIEELKQTQKslkKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENE 627
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 656 SLASSGLKKDSRLKTLEIALEQKKEECLKMESqlkKAHEATLEARASPEMSDRIQQL----EREISRYKDESSKAQT--- 728
Cdd:TIGR04523 628 KLSSIIKNIKSKKNKLKQEVKQIKETIKEIRN---KWPEIIKKIKESKTKIDDIIELmkdwLKELSLHYKKYITRMIrik 704
|
410 420 430
....*....|....*....|....*....|....*..
gi 1907170192 729 EVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKV 765
Cdd:TIGR04523 705 DLPKLEEKYKEIEKELKKLDEFSKELENIIKNFNKKF 741
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
598-828 |
2.62e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.84 E-value: 2.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 598 ERTIERLKEQRD--RDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDikehasslassglkkdSRLKTLEIAL 675
Cdd:COG4913 241 HEALEDAREQIEllEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLE----------------AELEELRAEL 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 676 EQKKEECLKMESQLKKAHEATLEARASPEMS--DRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAE 753
Cdd:COG4913 305 ARLEAELERLEARLDALREELDELEAQIRGNggDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAA 384
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907170192 754 LERQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAER 828
Cdd:COG4913 385 LRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAEALGLDEAE 459
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
708-868 |
5.24e-06 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 48.77 E-value: 5.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 708 RIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVAnlKHKEQVEKKKSAQMLEEAR 787
Cdd:COG1579 18 ELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIK--KYEEQLGNVRNNKEYEALQ 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 788 RREDSLSDSSQQLQDSLRKKDDRIEELEEALREsvqITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKL 867
Cdd:COG1579 96 KEIESLKRRISDLEDEILELMERIEELEEELAE---LEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAKI 172
|
.
gi 1907170192 868 S 868
Cdd:COG1579 173 P 173
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
352-971 |
5.76e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 50.61 E-value: 5.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 352 QKEKENNMLREEMH-RRFE-NAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSSEEREEEMKQMEvy 429
Cdd:pfam12128 219 NRQQVEHWIRDIQAiAGIMkIRPEFTKLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLD-- 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 430 rshsKFMKNKIGQVKQELSRKDTELLALQTKLETLTnqfSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETM 509
Cdd:pfam12128 297 ----DQWKEKRDELNGELSAADAAVAKDRSELEALE---DQHGAFLDADIETAAADQEQLPSWQSELENLEERLKALTGK 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 510 LNKKTKQIQDMAEEKGTQ-AGEIHDLKDMLD-VKERKV-------NVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADT 580
Cdd:pfam12128 370 HQDVTAKYNRRRSKIKEQnNRDIAGIKDKLAkIREARDrqlavaeDDLQALESELREQLEAGKLEFNEEEYRLKSRLGEL 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 581 TNTDTALTTLEEALADKERTIERLKEQRDRDE--REKQEEIDTYKKDLKDLREKVSL------------------LQGDL 640
Cdd:pfam12128 450 KLRLNQATATPELLLQLENFDERIERAREEQEaaNAEVERLQSELRQARKRRDQASEalrqasrrleerqsaldeLELQL 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 641 SEKEASLL--------DIKEHASSLASSGLKKDSRLKTLEIALEQKKEECL--------KMESQLKKAHEATLEARASP- 703
Cdd:pfam12128 530 FPQAGTLLhflrkeapDWEQSIGKVISPELLHRTDLDPEVWDGSVGGELNLygvkldlkRIDVPEWAASEEELRERLDKa 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 704 -----EMSDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVE--------NEKNDKDKKIAELERQVKDQNKKVANLKH 770
Cdd:pfam12128 610 eealqSAREKQAAAEEQLVQANGELEKASREETFARTALKNARldlrrlfdEKQSEKDKKNKALAERKDSANERLNSLEA 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 771 KEQVEKKKSAQMLEEARRREDSLSDSSQQ-LQDSLRKKDDRIEELEEALrESVQITAEREMVLAQEESARTNAEKQVEEL 849
Cdd:pfam12128 690 QLKQLDKKHQAWLEEQKEQKREARTEKQAyWQVVEGALDAQLALLKAAI-AARRSGAKAELKALETWYKRDLASLGVDPD 768
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 850 LMAmeKVKQELESMKAKLSSTQQSLAE--------KET---HLTNLRAERRKHLEEVLEMKQEaLLAAISEKDANIALLE 918
Cdd:pfam12128 769 VIA--KLKREIRTLERKIERIAVRRQEvlryfdwyQETwlqRRPRLATQLSNIERAISELQQQ-LARLIADTKLRRAKLE 845
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|...
gi 1907170192 919 LSSSKKKTQEEVAALKREKDRLVqqlkQQTQNRMKLMADNYEDDHFRSSRSNQ 971
Cdd:pfam12128 846 MERKASEKQQVRLSENLRGLRCE----MSKLATLKEDANSEQAQGSIGERLAQ 894
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
704-954 |
5.98e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.45 E-value: 5.98e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 704 EMSDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNdkdkKIAELERQVKDQNKKVANLKHKeqveKKKSAQML 783
Cdd:PRK03918 197 EKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKE----EIEELEKELESLEGSKRKLEEK----IRELEERI 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 784 EEARRREDSLSDSSQQLQdSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELlmamEKVKQELESM 863
Cdd:PRK03918 269 EELKKEIEELEEKVKELK-ELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKEL----EEKEERLEEL 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 864 KAKLSSTQQSLAEKETHLTNLraERRKHLEEVLEmKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQ 943
Cdd:PRK03918 344 KKKLKELEKRLEELEERHELY--EEAKAKKEELE-RLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKE 420
|
250
....*....|.
gi 1907170192 944 LKQQTQNRMKL 954
Cdd:PRK03918 421 IKELKKAIEEL 431
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
440-887 |
6.06e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.68 E-value: 6.06e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 440 IGQVKQELSRKDTELLALQTKLETLTNQFSDS--------KQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLN 511
Cdd:COG4913 304 LARLEAELERLEARLDALREELDELEAQIRGNggdrleqlEREIERLERELEERERRRARLEALLAALGLPLPASAEEFA 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 512 KKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKvnvlqkkienLQEQLRDKEKQMSSLKERVKS----LQADTTNTDTAL 587
Cdd:COG4913 384 ALRAEAAALLEALEEELEALEEALAEAEAALRD----------LRRELRELEAEIASLERRKSNiparLLALRDALAEAL 453
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 588 TTLEEAL---------ADKERT----IERL-----------KEQRDR-----DEREKQEEIDTYK-KDLKDLREKVSLLQ 637
Cdd:COG4913 454 GLDEAELpfvgelievRPEEERwrgaIERVlggfaltllvpPEHYAAalrwvNRLHLRGRLVYERvRTGLPDPERPRLDP 533
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 638 GDLSEKeaslLDIKEHA------SSLASSG----------LKKDSR-------LKTLEIALEQKKEECLKMESQLKKAHE 694
Cdd:COG4913 534 DSLAGK----LDFKPHPfrawleAELGRRFdyvcvdspeeLRRHPRaitragqVKGNGTRHEKDDRRRIRSRYVLGFDNR 609
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 695 ATLEARAspemsDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVEN--EKNDKDKKIAELERQVKDQNKKVANLKhKE 772
Cdd:COG4913 610 AKLAALE-----AELAELEEELAEAEERLEALEAELDALQERREALQRlaEYSWDEIDVASAEREIAELEAELERLD-AS 683
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 773 QVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEEsaRTNAEKQVEELLMA 852
Cdd:COG4913 684 SDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLEL--RALLEERFAAALGD 761
|
490 500 510
....*....|....*....|....*....|....*
gi 1907170192 853 mEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAE 887
Cdd:COG4913 762 -AVERELRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
751-951 |
6.51e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 50.32 E-value: 6.51e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 751 IAELERQVKdqnkkvanlKHKEQVEKKKSAQML-EEARRREDSLSdssqqlqdsLRKKDDRIEELEEALRESVQITAERE 829
Cdd:COG1196 195 LGELERQLE---------PLERQAEKAERYRELkEELKELEAELL---------LLKLRELEAELEELEAELEELEAELE 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 830 mvlaQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISE 909
Cdd:COG1196 257 ----ELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEEL 332
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1907170192 910 KDANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQQTQNR 951
Cdd:COG1196 333 EELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAEL 374
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
565-803 |
6.51e-06 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 50.01 E-value: 6.51e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 565 QMSSL-KERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEK 643
Cdd:PHA02562 167 EMDKLnKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 644 EASLLDIKEHASSLASSGLKKDSRLKTL--EIALEQKKEECL-----------KMESQLKKAHEATLEARaspEMSDRIQ 710
Cdd:PHA02562 247 VMDIEDPSAALNKLNTAAAKIKSKIEQFqkVIKMYEKGGVCPtctqqisegpdRITKIKDKLKELQHSLE---KLDTAID 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 711 QLEREISRYKDESSKA---QTEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVANLKHKEQVEKKKSAQMLEEar 787
Cdd:PHA02562 324 ELEEIMDEFNEQSKKLlelKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKE-- 401
|
250
....*....|....*.
gi 1907170192 788 rrEDSLSDSSQQLQDS 803
Cdd:PHA02562 402 --KYHRGIVTDLLKDS 415
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
387-748 |
7.42e-06 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 50.43 E-value: 7.42e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 387 KDSKISSMERGLRDLEEEIQMLKS--NGAL-----SSEEREEEMKQMEvYRSHSKFMKNKIGQVKQELSRKDTELLALQT 459
Cdd:PTZ00108 997 KEYLLGKLERELARLSNKVRFIKHviNGELvitnaKKKDLVKELKKLG-YVRFKDIIKKKSEKITAEEEEGAEEDDEADD 1075
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 460 KLETLTNQ-------------FSDSKQHIEVLKESLTAKEQRAAILQ---------TEVDALRLRLEEKETMLNKKTKQI 517
Cdd:PTZ00108 1076 EDDEEELGaavsydyllsmpiWSLTKEKVEKLNAELEKKEKELEKLKnttpkdmwlEDLDKFEEALEEQEEVEEKEIAKE 1155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 518 QDMAEEKGTQAGEIHDLKDmLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADK 597
Cdd:PTZ00108 1156 QRLKSKTKGKASKLRKPKL-KKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTK 1234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 598 ERTIERLKEQRDRDEREKQEEI------DTYKKDLKDLREKVSLLQGDLSEKEAS--LLDIKEHASSLASSGLKKD-SRL 668
Cdd:PTZ00108 1235 PKKSSVKRLKSKKNNSSKSSEDndefssDDLSKEGKPKNAPKRVSAVQYSPPPPSkrPDGESNGGSKPSSPTKKKVkKRL 1314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 669 KTLEIALEQKKEECLKmESQLKKAHEATLEARASPEmsdriQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKD 748
Cdd:PTZ00108 1315 EGSLAALKKKKKSEKK-TARKKKSKTRVKQASASQS-----SRLLRRPRKKKSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
432-944 |
8.29e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.30 E-value: 8.29e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 432 HSKFMKNKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLeeketmLN 511
Cdd:COG4913 261 AERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQI------RG 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 512 KKTKQIQDMAEekgtqagEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQAdttntdtALTTLE 591
Cdd:COG4913 335 NGGDRLEQLER-------EIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLE-------ALEEEL 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 592 EALADKERTIERLKEQRDRDEREKQEEID-------TYKKDLKDLREkvsLLQGDLSEKEAS------LLDIKEHAS--- 655
Cdd:COG4913 401 EALEEALAEAEAALRDLRRELRELEAEIAslerrksNIPARLLALRD---ALAEALGLDEAElpfvgeLIEVRPEEErwr 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 656 --------SLASS----------------GLKKDSRLKTLEIALEQKKEECL---------KMESQLKKAH---EATLEA 699
Cdd:COG4913 478 gaiervlgGFALTllvppehyaaalrwvnRLHLRGRLVYERVRTGLPDPERPrldpdslagKLDFKPHPFRawlEAELGR 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 700 RASPEMSDRIQQLERE---ISR---YKDESS----KAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVANLK 769
Cdd:COG4913 558 RFDYVCVDSPEELRRHpraITRagqVKGNGTrhekDDRRRIRSRYVLGFDNRAKLAALEAELAELEEELAEAEERLEALE 637
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 770 -HKEQVEKKKSA-QMLEEARRREDSLsdssQQLQDSLRKKDDRIEELEEALREsvqitaeremvLAQeesartnAEKQVE 847
Cdd:COG4913 638 aELDALQERREAlQRLAEYSWDEIDV----ASAEREIAELEAELERLDASSDD-----------LAA-------LEEQLE 695
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 848 ELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAErrkhLEEVLEMKQEALLAAISEKDANIALLELSSSKKKT- 926
Cdd:COG4913 696 ELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDR----LEAAEDLARLELRALLEERFAAALGDAVERELRENl 771
|
570
....*....|....*...
gi 1907170192 927 QEEVAALKREKDRLVQQL 944
Cdd:COG4913 772 EERIDALRARLNRAEEEL 789
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
335-938 |
9.07e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 50.17 E-value: 9.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 335 RLAEAEMHVHHLESLLEQKEKENNMLREEMHRRFE--------NAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQ 406
Cdd:pfam01576 20 RQQKAESELKELEKKHQQLCEEKNALQEQLQAETElcaeaeemRARLAARKQELEEILHELESRLEEEEERSQQLQNEKK 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 407 MLKSNGALSSEEREEEMK-----QMEVYRSHSKFMKnkigqvkqelsrKDTELLALQTKLETLTNQFSDSKQHIEVLKES 481
Cdd:pfam01576 100 KMQQHIQDLEEQLDEEEAarqklQLEKVTTEAKIKK------------LEEDILLLEDQNSKLSKERKLLEERISEFTSN 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 482 LTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDmldvkerKVNVLQKKIENLQEQLRD 561
Cdd:pfam01576 168 LAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQE-------QIAELQAQIAELRAQLAK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 562 KEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQ---EEIDTYKKDLKDLREKVSLLQG 638
Cdd:pfam01576 241 KEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRdlgEELEALKTELEDTLDTTAAQQE 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 639 DLSEKEASLLDIKE--------HASSLASSGLKKDSRLKTLEIALEQKK--------------EECLKMESQLKKAHEAT 696
Cdd:pfam01576 321 LRSKREQEVTELKKaleeetrsHEAQLQEMRQKHTQALEELTEQLEQAKrnkanlekakqaleSENAELQAELRTLQQAK 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 697 LEARAS--------PEMSDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKDQN------ 762
Cdd:pfam01576 401 QDSEHKrkklegqlQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQellqee 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 763 --KKVANLKHKEQVEKKKSAQM-----LEEARRR-EDSLSDSSQQLQDSLRKKDDR---IEELEEA-------LRESVQI 824
Cdd:pfam01576 481 trQKLNLSTRLRQLEDERNSLQeqleeEEEAKRNvERQLSTLQAQLSDMKKKLEEDagtLEALEEGkkrlqreLEALTQQ 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 825 TAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALL 904
Cdd:pfam01576 561 LEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQLVSNLEKKQKKFDQMLAEEKAISARYAEERDRAEAEAREKETRALS 640
|
650 660 670
....*....|....*....|....*....|....
gi 1907170192 905 AAISEKDANIALLELSSSKKKTQEEVAALKREKD 938
Cdd:pfam01576 641 LARALEEALEAKEELERTNKQLRAEMEDLVSSKD 674
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
549-846 |
9.72e-06 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 49.74 E-value: 9.72e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 549 QKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLK-EQRDRD-EREKQEEIDTYKKDL 626
Cdd:pfam17380 298 QERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRqEERKRElERIRQEEIAMEISRM 377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 627 KDLrEKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASPEMS 706
Cdd:pfam17380 378 REL-ERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQ 456
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 707 DRIQQLEReISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVANLKHKEQVEKKKSaqMLEEA 786
Cdd:pfam17380 457 ERQQQVER-LRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKRKLLEKEMEERQKA--IYEEE 533
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 787 RRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQV 846
Cdd:pfam17380 534 RRREAEEERRKQQEMEERRRIQEQMRKATEERSRLEAMEREREMMRQIVESEKARAEYEA 593
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
690-875 |
1.29e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 49.01 E-value: 1.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 690 KKAHEATLEARaspemsDRIQQLEREISRYKDEsskAQTEV-DRLLEILKEVENEKNDKDKKIAELERQVKDqnkKVANL 768
Cdd:PRK12704 31 AKIKEAEEEAK------RILEEAKKEAEAIKKE---ALLEAkEEIHKLRNEFEKELRERRNELQKLEKRLLQ---KEENL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 769 KHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEAlresVQITAE--REMVLAQ-EESARTNAEKQ 845
Cdd:PRK12704 99 DRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERI----SGLTAEeaKEILLEKvEEEARHEAAVL 174
|
170 180 190
....*....|....*....|....*....|..
gi 1907170192 846 VEEllmAMEKVKQELEsMKAK--LSSTQQSLA 875
Cdd:PRK12704 175 IKE---IEEEAKEEAD-KKAKeiLAQAIQRCA 202
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
688-900 |
1.40e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.53 E-value: 1.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 688 QLKKAHEATLEARAS-------PEMSDRIQQLEREISRYKDESSK-----AQTEVDRLLEILKEVENEKNDKDKKIAELE 755
Cdd:COG4913 236 DLERAHEALEDAREQiellepiRELAERYAAARERLAELEYLRAAlrlwfAQRRLELLEAELEELRAELARLEAELERLE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 756 RQVKDQNKKVANLKhkeqvekkksAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALResvqitaeremvlAQE 835
Cdd:COG4913 316 ARLDALREELDELE----------AQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLA-------------ALG 372
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907170192 836 ESARTNAEkqveELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQ 900
Cdd:COG4913 373 LPLPASAE----EFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLER 433
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
536-783 |
1.66e-05 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 48.86 E-value: 1.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 536 DMLDVKE-RKVNVLQK-KIENLQEQLRDKEKQMSSLKERVK-------SLQADTTNTDTALTTLEEALADKERTIERLKE 606
Cdd:PHA02562 158 DLLDISVlSEMDKLNKdKIRELNQQIQTLDMKIDHIQQQIKtynknieEQRKKNGENIARKQNKYDELVEEAKTIKAEIE 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 607 QRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLS--EKEASLL-----------DIKEHASSLAssglKKDSRLKTLEI 673
Cdd:PHA02562 238 ELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEqfQKVIKMYekggvcptctqQISEGPDRIT----KIKDKLKELQH 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 674 ALEQKKEECLKMESQLKKAHEATLEARaspEMSDRIQQLEREISRYKDESSKAQTEVDRLleilkevENEKNDKDKKIAE 753
Cdd:PHA02562 314 SLEKLDTAIDELEEIMDEFNEQSKKLL---ELKNKISTNKQSLITLVDKAKKVKAAIEEL-------QAEFVDNAEELAK 383
|
250 260 270
....*....|....*....|....*....|
gi 1907170192 754 LERQVKDQNKKVANLKhKEQVEKKKSAQML 783
Cdd:PHA02562 384 LQDELDKIVKTKSELV-KEKYHRGIVTDLL 412
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
419-954 |
1.83e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 49.02 E-value: 1.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 419 REEEMKQMEVYRSHSKFMKNKIGQVKQELSRKDTELLA----LQTKLETLTNQFSDS----------KQHIEVLKESLTA 484
Cdd:pfam01576 3 QEEEMQAKEEELQKVKERQQKAESELKELEKKHQQLCEeknaLQEQLQAETELCAEAeemrarlaarKQELEEILHELES 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 485 K----EQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLR 560
Cdd:pfam01576 83 RleeeEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKERKLLEERIS 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 561 DKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERT---IERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQ 637
Cdd:pfam01576 163 EFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGrqeLEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKE 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 638 GDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASPEMSDRIQQLEREIs 717
Cdd:pfam01576 243 EELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTELEDTLDTTAAQQEL- 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 718 rykdeSSKAQTEVDRLLEILKE--------VENEKNDKDKKIAELERQVKDQNKKVANLKHKEQVEKKKSAQMLEEARrr 789
Cdd:pfam01576 322 -----RSKREQEVTELKKALEEetrsheaqLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAELR-- 394
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 790 edSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSS 869
Cdd:pfam01576 395 --TLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQD 472
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 870 TQQSLAEKETHLTNLRA------ERRKHLEEVLEMKQEALLAAisEKDANIALLELSSSKKKTQEEVAA----------L 933
Cdd:pfam01576 473 TQELLQEETRQKLNLSTrlrqleDERNSLQEQLEEEEEAKRNV--ERQLSTLQAQLSDMKKKLEEDAGTlealeegkkrL 550
|
570 580
....*....|....*....|.
gi 1907170192 934 KREKDRLVQQLKQQTQNRMKL 954
Cdd:pfam01576 551 QRELEALTQQLEEKAAAYDKL 571
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
434-686 |
2.05e-05 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 48.47 E-value: 2.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 434 KFMKNKIGQVKQELSRKDTELLALQTKLETLTNqfsdskqHIEVLKESltaKEQRAAILQTEVDALRLRLEEKETMLNKK 513
Cdd:PHA02562 170 KLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNK-------NIEEQRKK---NGENIARKQNKYDELVEEAKTIKAEIEEL 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 514 TKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQE---------QLRDKEKQMSSLKERVKSLQADttntd 584
Cdd:PHA02562 240 TDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKggvcptctqQISEGPDRITKIKDKLKELQHS----- 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 585 talttleealadkertIERLKEQRDrDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKK 664
Cdd:PHA02562 315 ----------------LEKLDTAID-ELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDN 377
|
250 260
....*....|....*....|....
gi 1907170192 665 DSRLKTLEIALEQKKEEC--LKME 686
Cdd:PHA02562 378 AEELAKLQDELDKIVKTKseLVKE 401
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
445-577 |
2.75e-05 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 47.65 E-value: 2.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 445 QELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEK 524
Cdd:PRK09039 46 REISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQEL 125
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907170192 525 GTQAGEIHDlkdmldvKERKVNVLQKKIENLQEQL------------RDKEKQM----------SSLKERVKSLQ 577
Cdd:PRK09039 126 DSEKQVSAR-------ALAQVELLNQQIAALRRQLaaleaaldasekRDRESQAkiadlgrrlnVALAQRVQELN 193
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
335-917 |
2.84e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 48.18 E-value: 2.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 335 RLAEAEMHVHHLESLLEQKEKENNMLREEMHRRFENAPDSAKTKALQTViEMKDSKISsMERGL---RDLEEEIQMLKSN 411
Cdd:pfam05483 248 QITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTK-ELEDIKMS-LQRSMstqKALEEDLQIATKT 325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 412 GALSSEEREEEMKQMEVYRSHSKFmknkigqvkqelsrkdtellaLQTKLETLTNQfsdskqhievLKESLTAKEQRaai 491
Cdd:pfam05483 326 ICQLTEEKEAQMEELNKAKAAHSF---------------------VVTEFEATTCS----------LEELLRTEQQR--- 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 492 LQTEVDALRLRLEEketmLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVlQKKIENLQEQLRDKEKQMSSLke 571
Cdd:pfam05483 372 LEKNEDQLKIITME----LQKKSSELEEMTKFKNNKEVELEELKKILAEDEKLLDE-KKQFEKIAEELKGKEQELIFL-- 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 572 rvksLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQgdlsEKEASLLDIK 651
Cdd:pfam05483 445 ----LQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQ----EASDMTLELK 516
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 652 EHASSLASSGLKKDSRLKTLEIALEQkkeeclkmESQLKKAHEATLEaraspEMSDRIQQLEREISRYKDESSKAQTEVD 731
Cdd:pfam05483 517 KHQEDIINCKKQEERMLKQIENLEEK--------EMNLRDELESVRE-----EFIQKGDEVKCKLDKSEENARSIEYEVL 583
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 732 RLLEILKEVENEKNDKDKKIAELERQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRI 811
Cdd:pfam05483 584 KKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEI 663
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 812 EEL---EEALRESVQ---ITAEREMVLAQEESARtnAEKQVEELLMAMEKVKQ-----------ELESMKAKLSSTQQSL 874
Cdd:pfam05483 664 EDKkisEEKLLEEVEkakAIADEAVKLQKEIDKR--CQHKIAEMVALMEKHKHqydkiieerdsELGLYKNKEQEQSSAK 741
|
570 580 590 600
....*....|....*....|....*....|....*....|...
gi 1907170192 875 AEKETHLTNLRAERRKhLEEVLEMKQEALLAAISEKDANIALL 917
Cdd:pfam05483 742 AALEIELSNIKAELLS-LKKQLEIEKEEKEKLKMEAKENTAIL 783
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
228-892 |
3.00e-05 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 48.54 E-value: 3.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 228 TIQALQDELRIQRDLNQLFQQDSSsrtgepCVAELTEENFQRLHAEHERQakelfllrKTLEEMELRIETQKQTLNARDE 307
Cdd:COG5022 818 CIIKLQKTIKREKKLRETEEVEFS------LKAEVLIQKFGRSLKAKKRF--------SLLKKETIYLQSAQRVELAERQ 883
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 308 SIKKLLEMLQSKGLSAKATEEDhertrrlaeaemhvhhlESLLEQKEKENNMLREEMHRRfenapdSAKTKALQTVIEMK 387
Cdd:COG5022 884 LQELKIDVKSISSLKLVNLELE-----------------SEIIELKKSLSSDLIENLEFK------TELIARLKKLLNNI 940
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 388 DSKI-SSMERGLRDLEEEIQMLKSNGALSSEEREEEMKQMEVYRSHSKFMKNKIGQVKQELSRKDTELLALQTKLETL-- 464
Cdd:COG5022 941 DLEEgPSIEYVKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYGALQESTKQLke 1020
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 465 TNQFSDSKQHIEVLKESLTAKEQRaailQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKgtqageihDLKDMLDVKERK 544
Cdd:COG5022 1021 LPVEVAELQSASKIISSESTELSI----LKPLQKLKGLLLLENNQLQARYKALKLRRENS--------LLDDKQLYQLES 1088
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 545 VNVLQKKIENLQEQLRDKEkqmSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQeeidtYKK 624
Cdd:COG5022 1089 TENLLKTINVKDLEVTNRN---LVKPANVLQFIVAQMIKLNLLQEISKFLSQLVNTLEPVFQKLSVLQLELD-----GLF 1160
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 625 DLKDLREKVSL----LQGDLSEKEASLLDIKEHASSlassglkkdSRLKTLE---IALEQK-KEECLKMESQLKKAHEAT 696
Cdd:COG5022 1161 WEANLEALPSPppfaALSEKRLYQSALYDEKSKLSS---------SEVNDLKnelIALFSKiFSGWPRGDKLKKLISEGW 1231
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 697 LEARASPEMSDriqqlerEISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVA-----NLKHK 771
Cdd:COG5022 1232 VPTEYSTSLKG-------FNNLNKKFDTPASMSNEKLLSLLNSIDNLLSSYKLEEEVLPATINSLLQYINvglfnALRTK 1304
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 772 EQVEKKKSAQMLEEARRREDS------LSDSSQQLQ------DSLRKKDDRIEELEEaLRESVQ--ITAEREMVLAQEES 837
Cdd:COG5022 1305 ASSLRWKSATEVNYNSEELDDwcrefeISDVDEELEeliqavKVLQLLKDDLNKLDE-LLDACYslNPAEIQNLKSRYDP 1383
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*..
gi 1907170192 838 A--RTNAEKQVEELLMAmekvkqelESMKAKLSSTQQSLAEKETHLTNLRAERRKHL 892
Cdd:COG5022 1384 AdkENNLPKEILKKIEA--------LLIKQELQLSLEGKDETEVHLSEIFSEEKSLI 1432
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
685-918 |
3.33e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.09 E-value: 3.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 685 MESQLKKAHEATLEARAS-----PEMSDRIQQLEREISRYKDE------SSKAQTEVDRLLEI---LKEVENEKNDKDKK 750
Cdd:COG3206 162 LEQNLELRREEARKALEFleeqlPELRKELEEAEAALEEFRQKnglvdlSEEAKLLLQQLSELesqLAEARAELAEAEAR 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 751 IAELERQVKDQNKKVANLKHKEQVEKKKSAqmLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEalresvQITAEREM 830
Cdd:COG3206 242 LAALRAQLGSGPDALPELLQSPVIQQLRAQ--LAELEAELAELSARYTPNHPDVIALRAQIAALRA------QLQQEAQR 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 831 VLAQEESARTNAEKQVEELlmamekvKQELESMKAKLsstqQSLAEKETHLTNLRAER---RKHLEEVLEMKQEALLAAi 907
Cdd:COG3206 314 ILASLEAELEALQAREASL-------QAQLAQLEARL----AELPELEAELRRLEREVevaRELYESLLQRLEEARLAE- 381
|
250
....*....|.
gi 1907170192 908 SEKDANIALLE 918
Cdd:COG3206 382 ALTVGNVRVID 392
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
654-868 |
3.79e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.45 E-value: 3.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 654 ASSLASSGLKKDSRLKTLEiALEQKKEECLKMESQLKKAHEATLEARAspEMSDRIQQLEREISRYKDESSKAQTEVDRL 733
Cdd:COG4942 12 ALAAAAQADAAAEAEAELE-QLQQEIAELEKELAALKKEEKALLKQLA--ALERRIAALARRIRALEQELAALEAELAEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 734 LEILKEVENEKNDKDKKIAELER--QVKDQNKKVANLKHKEQVEK------------KKSAQMLEEARRREDSLSDSSQQ 799
Cdd:COG4942 89 EKEIAELRAELEAQKEELAELLRalYRLGRQPPLALLLSPEDFLDavrrlqylkylaPARREQAEELRADLAELAALRAE 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907170192 800 LQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLS 868
Cdd:COG4942 169 LEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAA 237
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
436-763 |
5.97e-05 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 46.82 E-value: 5.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 436 MKNKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTK 515
Cdd:COG4372 43 LQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQK 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 516 QIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERvkSLQADTTNTDTALTTLEEALA 595
Cdd:COG4372 123 ERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEA--EAEQALDELLKEANRNAEKEE 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 596 DKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIAL 675
Cdd:COG4372 201 ELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAILVEKDTEEEELEI 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 676 EQKKEECLKMESQLKKAHEATLEARASPEMSDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELE 755
Cdd:COG4372 281 AALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAELADLLQLLLVGLLDNDVLELLS 360
|
....*...
gi 1907170192 756 RQVKDQNK 763
Cdd:COG4372 361 KGAEAGVA 368
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
591-744 |
9.79e-05 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 46.39 E-value: 9.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 591 EEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEkeaslldikehasslassglkKDSRLKT 670
Cdd:COG2433 387 EKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEE---------------------KDERIER 445
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907170192 671 LEIALEQKKEEclkMESQLKKAHEATLEARaspemsdRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEK 744
Cdd:COG2433 446 LERELSEARSE---ERREIRKDREISRLDR-------EIERLERELEEERERIEELKRKLERLKELWKLEHSGE 509
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
707-978 |
1.17e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 46.27 E-value: 1.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 707 DRIQQLE--REISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVANLKHKEQVEKKKSAQMLE 784
Cdd:pfam17380 351 ERIRQEErkRELERIRQEEIAMEISRMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQE 430
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 785 EARRREdslsdsSQQLQDSLRKKDDRIEELEEALRESVQITAEREmvlAQEESARTNAEKQVEELLMAMEKVKQELESmk 864
Cdd:pfam17380 431 EARQRE------VRRLEEERAREMERVRLEEQERQQQVERLRQQE---EERKRKKLELEKEKRDRKRAEEQRRKILEK-- 499
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 865 aKLSSTQQSLAEKEthltnlraERRKHLEEVLEMKQEALLAAISEKDAniallelsSSKKKTQEEVaalkREKDRLVQQL 944
Cdd:pfam17380 500 -ELEERKQAMIEEE--------RKRKLLEKEMEERQKAIYEEERRREA--------EEERRKQQEM----EERRRIQEQM 558
|
250 260 270
....*....|....*....|....*....|....
gi 1907170192 945 KQQTQNRMKLMADNYEDDHFRSSRSNQTNHKPSP 978
Cdd:pfam17380 559 RKATEERSRLEAMEREREMMRQIVESEKARAEYE 592
|
|
| RecN |
COG0497 |
DNA repair ATPase RecN [Replication, recombination and repair]; |
707-953 |
1.18e-04 |
|
DNA repair ATPase RecN [Replication, recombination and repair];
Pssm-ID: 440263 [Multi-domain] Cd Length: 555 Bit Score: 46.22 E-value: 1.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 707 DRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENekndkdkkiaelerqvkdqnkkvANLKHKEQVEkkksaqmLEEA 786
Cdd:COG0497 165 RAWRALKKELEELRADEAERARELDLLRFQLEELEA-----------------------AALQPGEEEE-------LEEE 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 787 RRRedsLSdSSQQLQDSLRKKDDRIEELEEALRESVQiTAEREMV-LAQEESARTNAEKQVEELLMAMEKVKQELESMKA 865
Cdd:COG0497 215 RRR---LS-NAEKLREALQEALEALSGGEGGALDLLG-QALRALErLAEYDPSLAELAERLESALIELEEAASELRRYLD 289
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 866 KLSSTQQSLAEKETHLTNLRAERRKH---LEEVLEMKQEAL--LAAISEKDANIALLElssskkktqEEVAALKREKDRL 940
Cdd:COG0497 290 SLEFDPERLEEVEERLALLRRLARKYgvtVEELLAYAEELRaeLAELENSDERLEELE---------AELAEAEAELLEA 360
|
250
....*....|...
gi 1907170192 941 VQQLkqqTQNRMK 953
Cdd:COG0497 361 AEKL---SAARKK 370
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
697-940 |
1.22e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.45 E-value: 1.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 697 LEARASPEMSDRIQQLEREISRYKDESSKAQTEVDRLLEIlKEVENEKNDKDKKIAELERQvkdqnkkvanlkhKEQVEK 776
Cdd:COG4913 218 LEEPDTFEAADALVEHFDDLERAHEALEDAREQIELLEPI-RELAERYAAARERLAELEYL-------------RAALRL 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 777 KKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALREsvqitAEREmvLAQEESAR-TNAEKQVEELLMAMEK 855
Cdd:COG4913 284 WFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDE-----LEAQ--IRGNGGDRlEQLEREIERLERELEE 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 856 VKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVlemkqEALLAAISEkdaniALLELSSSKKKTQEEVAALKR 935
Cdd:COG4913 357 RERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEAL-----EEELEALEE-----ALAEAEAALRDLRRELRELEA 426
|
....*
gi 1907170192 936 EKDRL 940
Cdd:COG4913 427 EIASL 431
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
260-864 |
1.30e-04 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 46.28 E-value: 1.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 260 AELTEENFQRLhaehERQAKELFLLRKTLEEMELRIETQKQTLNARdesikkllemlqskGLSAKATEEDHERTRR-LAE 338
Cdd:pfam07111 65 AELISRQLQEL----RRLEEEVRLLRETSLQQKMRLEAQAMELDAL--------------AVAEKAGQAEAEGLRAaLAG 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 339 AEMHVHHLESLLEQKEKENNMLREEMHrrfenapdSAKTKALQTVIEMKDSKISSMERGLRDLEEEiqmlksngalssee 418
Cdd:pfam07111 127 AEMVRKNLEEGSQRELEEIQRLHQEQL--------SSLTQAHEEALSSLTSKAEGLEKSLNSLETK-------------- 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 419 REEEMKQMEVYRSHSKFMKNKIGQVKQELSRKDTELLALQTKL-ETLTNQFSDSKQHIE--VLKESLTAKEQRAAILQTE 495
Cdd:pfam07111 185 RAGEAKQLAEAQKEAELLRKQLSKTQEELEAQVTLVESLRKYVgEQVPPEVHSQTWELErqELLDTMQHLQEDRADLQAT 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 496 VDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEI-HDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQmssLKERVK 574
Cdd:pfam07111 265 VELLQVRVQSLTHMLALQEEELTRKIQPSDSLEPEFpKKCRSLLNRWREKVFALMVQLKAQDLEHRDSVKQ---LRGQVA 341
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 575 SLQADTTNTDTALTTLEEALADK--ERTIERLK--------EQRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKE 644
Cdd:pfam07111 342 ELQEQVTSQSQEQAILQRALQDKaaEVEVERMSakglqmelSRAQEARRRQQQQTASAEEQLKFVVNAMSSTQIWLETTM 421
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 645 ASLLDIKEHASSLA---SSGLKKDSRLKTL---EIALEQkkeecLKMESQLKKAHEATLEARASPEMSDRIQQLEREISR 718
Cdd:pfam07111 422 TRVEQAVARIPSLSnrlSYAVRKVHTIKGLmarKVALAQ-----LRQESCPPPPPAPPVDADLSLELEQLREERNRLDAE 496
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 719 YKDESSKAQTEVDRLLEilkEVENEKNDKDKKIAELERQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQ 798
Cdd:pfam07111 497 LQLSAHLIQQEVGRARE---QGEAERQQLSEVAQQLEQELQRAQESLASVGQQLEVARQGQQESTEEAASLRQELTQQQE 573
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907170192 799 QLQDSLRKKddrIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMK 864
Cdd:pfam07111 574 IYGQALQEK---VAEVETRLREQLSDTKRRLNEARREQAKAVVSLRQIQHRATQEKERNQELRRLQ 636
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
763-936 |
1.32e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 45.92 E-value: 1.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 763 KKVANLKHKEqvEKKKSAQMLEEARRREDSLSDssQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESartNA 842
Cdd:PRK12704 26 KKIAEAKIKE--AEEEAKRILEEAKKEAEAIKK--EALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEE---NL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 843 EKQVEELlmamEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEallaaisekDANIALLElsSS 922
Cdd:PRK12704 99 DRKLELL----EKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAE---------EAKEILLE--KV 163
|
170
....*....|....
gi 1907170192 923 KKKTQEEVAALKRE 936
Cdd:PRK12704 164 EEEARHEAAVLIKE 177
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
362-951 |
1.56e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 46.19 E-value: 1.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 362 EEMHRRFENAPDSAKTKalQTVIEMKDSKISSMERGLRDLEE-EIQMLKSNGALsseereeEMKQMEVYRSHSKFMKNKI 440
Cdd:TIGR00606 237 REIVKSYENELDPLKNR--LKEIEHNLSKIMKLDNEIKALKSrKKQMEKDNSEL-------ELKMEKVFQGTDEQLNDLY 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 441 GQVKQELSRKDTELLALQTKLETLTNQFSDSKQhievlKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDM 520
Cdd:TIGR00606 308 HNHQRTVREKERELVDCQRELEKLNKERRLLNQ-----EKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGF 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 521 AEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERT 600
Cdd:TIGR00606 383 ERGPFSERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKE 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 601 IERLKEQRDR----DEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLL-DIKEHASSLASSGLKKDSRLKTLEIAl 675
Cdd:TIGR00606 463 LQQLEGSSDRilelDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDrKLRKLDQEMEQLNHHTTTRTQMEMLT- 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 676 eQKKEECLKMESQLKKAHEATLEARA-----SPEMSDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKK 750
Cdd:TIGR00606 542 -KDKMDKDEQIRKIKSRHSDELTSLLgyfpnKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQ 620
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 751 IAELERQVKDqnkkvANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREM 830
Cdd:TIGR00606 621 LSSYEDKLFD-----VCGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQE 695
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 831 VLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMK-----QEALLA 905
Cdd:TIGR00606 696 FISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKndieeQETLLG 775
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*....
gi 1907170192 906 AI--SEKDANIAL----------LELSSSKKKTQEEVAALKR-EKDRLVQQLKQQTQNR 951
Cdd:TIGR00606 776 TImpEEESAKVCLtdvtimerfqMELKDVERKIAQQAAKLQGsDLDRTVQQVNQEKQEK 834
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
604-866 |
1.68e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 45.69 E-value: 1.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 604 LKEQRDRDEREKQE----EIDTYKKDLKDLR-EKVSLLQGDLSEKeaslLDIKEHASSLASSGLKKDSRLKTLEIaleqk 678
Cdd:PRK05771 14 LKSYKDEVLEALHElgvvHIEDLKEELSNERlRKLRSLLTKLSEA----LDKLRSYLPKLNPLREEKKKVSVKSL----- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 679 kEECLKMEsqlkkahEATLEaraspemsdriqQLEREISRYKDESSKAQTEVDRLLEILKEVENEKN------------- 745
Cdd:PRK05771 85 -EELIKDV-------EEELE------------KIEKEIKELEEEISELENEIKELEQEIERLEPWGNfdldlslllgfky 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 746 --------DKDKKIAELERQVKDQNKKVANLKHKE----QVEKKKSAQMLEEARR---REDSLSDSsqqlqdslRKKDDR 810
Cdd:PRK05771 145 vsvfvgtvPEDKLEELKLESDVENVEYISTDKGYVyvvvVVLKELSDEVEEELKKlgfERLELEEE--------GTPSEL 216
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 1907170192 811 IEELEEALREsvqITAEREMVLAQ-EESARTNAE--KQVEELLmAMEKVKQELESMKAK 866
Cdd:PRK05771 217 IREIKEELEE---IEKERESLLEElKELAKKYLEelLALYEYL-EIELERAEALSKFLK 271
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
748-909 |
1.99e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 44.15 E-value: 1.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 748 DKKIAELERQVKDQNKKVANLKHkeqvEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEAL------RES 821
Cdd:COG1579 16 DSELDRLEHRLKELPAELAELED----ELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLgnvrnnKEY 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 822 VQITAEremvLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEmKQE 901
Cdd:COG1579 92 EALQKE----IESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEA-ERE 166
|
....*...
gi 1907170192 902 ALLAAISE 909
Cdd:COG1579 167 ELAAKIPP 174
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
551-816 |
2.17e-04 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 45.42 E-value: 2.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 551 KIENLQEQLRDKEKQMSSLKER-VKSLQADTTNTDTALTTLEEALADKER-TIERLKEQRDRDEREKQEEIDTYKKdlKD 628
Cdd:PTZ00108 1103 KVEKLNAELEKKEKELEKLKNTtPKDMWLEDLDKFEEALEEQEEVEEKEIaKEQRLKSKTKGKASKLRKPKLKKKE--KK 1180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 629 LREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKK---DSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASPEM 705
Cdd:PTZ00108 1181 KKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKksnSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEF 1260
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 706 SDRIQQLEREIsryKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKDQN-KKVANLKHKEQVEKKKSAQMLE 784
Cdd:PTZ00108 1261 SSDDLSKEGKP---KNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKKKVKKRLeGSLAALKKKKKSEKKTARKKKS 1337
|
250 260 270
....*....|....*....|....*....|..
gi 1907170192 785 EARRREDSLSDSSQQLQDSLRKKDDRIEELEE 816
Cdd:PTZ00108 1338 KTRVKQASASQSSRLLRRPRKKKSDSSSEDDD 1369
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
609-803 |
2.26e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.82 E-value: 2.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 609 DRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQ 688
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 689 LKKAH------EATLEARASPEMSDRIQQLER-------EISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELE 755
Cdd:COG3883 95 LYRSGgsvsylDVLLGSESFSDFLDRLSALSKiadadadLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELE 174
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1907170192 756 RQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQDS 803
Cdd:COG3883 175 AQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAA 222
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
398-793 |
2.61e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.14 E-value: 2.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 398 LRDLEEEIQMLKSNGALSSE---EREEEMKQMEVYRSHSKFMKNKIGQVKQELSRKDT--ELLALQTKLETLTNQFSDSK 472
Cdd:COG4717 73 LKELEEELKEAEEKEEEYAElqeELEELEEELEELEAELEELREELEKLEKLLQLLPLyqELEALEAELAELPERLEELE 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 473 QHIEVLKEsltaKEQRAAILQTEVDALRLRLEEKETMLNKKT-KQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKK 551
Cdd:COG4717 153 ERLEELRE----LEEELEELEAELAELQEELEELLEQLSLATeEELQDLAEELEELQQRLAELEEELEEAQEELEELEEE 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 552 IENLQEQLRDKEKQMSSLKERVK--------SLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEIDTYK 623
Cdd:COG4717 229 LEQLENELEAAALEERLKEARLLlliaaallALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQ 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 624 KDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQ--LKKAHEATLEA-R 700
Cdd:COG4717 309 ALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAalLAEAGVEDEEElR 388
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 701 ASPEMSDRIQQLEREISRYKDESSKAQTEVDRLLEIL--KEVENEKNDKDKKIAELERQVKDQNKKVANLKHkeQVEKKK 778
Cdd:COG4717 389 AALEQAEEYQELKEELEELEEQLEELLGELEELLEALdeEELEEELEELEEELEELEEELEELREELAELEA--ELEQLE 466
|
410
....*....|....*
gi 1907170192 779 SAQMLEEARRREDSL 793
Cdd:COG4717 467 EDGELAELLQELEEL 481
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
669-820 |
2.87e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 44.85 E-value: 2.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 669 KTLEIALEQKKEECLKMESQlKKAHEATLEARASPEMSDRIQQLEREISRYkdesskaQTEVDRLLEILKEvenekndKD 748
Cdd:COG2433 376 LSIEEALEELIEKELPEEEP-EAEREKEHEERELTEEEEEIRRLEEQVERL-------EAEVEELEAELEE-------KD 440
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907170192 749 KKIAELERQVKDqnkkvanLKHKEQVEKKKSaqmlEEARRREDSLSdssqQLQDSLRKKDDRIEELEEALRE 820
Cdd:COG2433 441 ERIERLERELSE-------ARSEERREIRKD----REISRLDREIE----RLERELEEERERIEELKRKLER 497
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
550-946 |
3.83e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.37 E-value: 3.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 550 KKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTAlttlEEALADKERTIERLkeQRDRDEREKQEEIDTYKKDLKDL 629
Cdd:COG4717 64 RKPELNLKELKELEEELKEAEEKEEEYAELQEELEEL----EEELEELEAELEEL--REELEKLEKLLQLLPLYQELEAL 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 630 REKVSLLQGDLSEKEASLLDIKEhasslassglkKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEaraspEMSDRI 709
Cdd:COG4717 138 EAELAELPERLEELEERLEELRE-----------LEEELEELEAELAELQEELEELLEQLSLATEEELQ-----DLAEEL 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 710 QQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKD--KKIAELERQV----------------------------- 758
Cdd:COG4717 202 EELQQRLAELEEELEEAQEELEELEEELEQLENELEAAAleERLKEARLLLliaaallallglggsllsliltiagvlfl 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 759 ----------KDQNKKVANLKHKEQVEKKKSAQMLEEARRRE--DSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITA 826
Cdd:COG4717 282 vlgllallflLLAREKASLGKEAEELQALPALEELEEEELEEllAALGLPPDLSPEELLELLDRIEELQELLREAEELEE 361
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 827 EREMVLAQEESARTNAEKQVEELLMAMEKVKQelesmkaklsstQQSLAEKETHLTNLRAERRKHLEEVlemkqEALLAA 906
Cdd:COG4717 362 ELQLEELEQEIAALLAEAGVEDEEELRAALEQ------------AEEYQELKEELEELEEQLEELLGEL-----EELLEA 424
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 1907170192 907 ISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQ 946
Cdd:COG4717 425 LDEEELEEELEELEEELEELEEELEELREELAELEAELEQ 464
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
546-767 |
4.00e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 44.38 E-value: 4.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 546 NVLQKKIENLQEQ----LRDKEKQMSSLKErvkslqadttntdtalttleEALADKERTIERLKEQRDRDEREKQEEIdt 621
Cdd:PRK12704 27 KIAEAKIKEAEEEakriLEEAKKEAEAIKK--------------------EALLEAKEEIHKLRNEFEKELRERRNEL-- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 622 yKKDLKDLREKVSLLqgdlsEKEASLLDikehasslassglKKDSRLKTLEIALEQKKEECLKMESQLKKAHEatleara 701
Cdd:PRK12704 85 -QKLEKRLLQKEENL-----DRKLELLE-------------KREEELEKKEKELEQKQQELEKKEEELEELIE------- 138
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907170192 702 spemsDRIQQLEReISRYKDESSKAQtevdrlleILKEVENE-KNDKDKKIAELERQVKDQNKKVAN 767
Cdd:PRK12704 139 -----EQLQELER-ISGLTAEEAKEI--------LLEKVEEEaRHEAAVLIKEIEEEAKEEADKKAK 191
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
486-954 |
4.38e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 4.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 486 EQRAAILQTEVDALR------LRLEEKETMLnKKTKQIQDMAEEKGTQAGEIHDLKDMLDV--KERKVNVLQKKIENLQE 557
Cdd:COG4913 224 FEAADALVEHFDDLErahealEDAREQIELL-EPIRELAERYAAARERLAELEYLRAALRLwfAQRRLELLEAELEELRA 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 558 QLRDKEKQMSSLKERVKSLQADTTNTDtalttlEEALADKERTIERLKEQRDRdereKQEEIDTYKKDLKDLREKVSLLQ 637
Cdd:COG4913 303 ELARLEAELERLEARLDALREELDELE------AQIRGNGGDRLEQLEREIER----LERELEERERRRARLEALLAALG 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 638 GDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEAtLEARASPeMSDRIQQLEREIS 717
Cdd:COG4913 373 LPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIAS-LERRKSN-IPARLLALRDALA 450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 718 RykdESSKAQTEVDRLLEILkEVENEKND------------------KDKKIAELERQVkDQNKkvanLKHKEQVEKKKS 779
Cdd:COG4913 451 E---ALGLDEAELPFVGELI-EVRPEEERwrgaiervlggfaltllvPPEHYAAALRWV-NRLH----LRGRLVYERVRT 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 780 AQMLEEARR-REDSL--------SDSSQQLQDSLRKKDDRI--EELEEALRESVQITAEREMvlAQEESART-------- 840
Cdd:COG4913 522 GLPDPERPRlDPDSLagkldfkpHPFRAWLEAELGRRFDYVcvDSPEELRRHPRAITRAGQV--KGNGTRHEkddrrrir 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 841 -------NAEKQVEELlmamekvKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKH--LEEVLEMKQ--EALLAAISE 909
Cdd:COG4913 600 sryvlgfDNRAKLAAL-------EAELAELEEELAEAEERLEALEAELDALQERREALqrLAEYSWDEIdvASAEREIAE 672
|
490 500 510 520
....*....|....*....|....*....|....*....|....*.
gi 1907170192 910 KDANIALLELSSSK-KKTQEEVAALKREKDRLVQQLKQQTQNRMKL 954
Cdd:COG4913 673 LEAELERLDASSDDlAALEEQLEELEAELEELEEELDELKGEIGRL 718
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
264-562 |
5.04e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 44.44 E-value: 5.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 264 EENFQRLHAEHERQAKELFLLRKTLEEMELRIETQKQTL-NARDESIKKLLEMLQSKGLSAKATEE-----DHERTRRLA 337
Cdd:pfam12128 610 EEALQSAREKQAAAEEQLVQANGELEKASREETFARTALkNARLDLRRLFDEKQSEKDKKNKALAErkdsaNERLNSLEA 689
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 338 EAEMHVHHLESLLEQKE---KENNMLREEMHRRFENAPDS-----------------AKTKALQTviEMKDS-------- 389
Cdd:pfam12128 690 QLKQLDKKHQAWLEEQKeqkREARTEKQAYWQVVEGALDAqlallkaaiaarrsgakAELKALET--WYKRDlaslgvdp 767
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 390 -KISSMERGLRDLEEEIQMLKSNGalsSEEREEEMKQMEVYRSHSKFMKNKIGQVKQELSRKDTELLALQtkletltnqf 468
Cdd:pfam12128 768 dVIAKLKREIRTLERKIERIAVRR---QEVLRYFDWYQETWLQRRPRLATQLSNIERAISELQQQLARLI---------- 834
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 469 SDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMlnkktKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVL 548
Cdd:pfam12128 835 ADTKLRRAKLEMERKASEKQQVRLSENLRGLRCEMSKLATL-----KEDANSEQAQGSIGERLAQLEDLKLKRDYLSESV 909
|
330
....*....|....
gi 1907170192 549 QKKIENLQEQLRDK 562
Cdd:pfam12128 910 KKYVEHFKNVIADH 923
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
515-652 |
5.41e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.99 E-value: 5.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 515 KQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTleEAL 594
Cdd:COG1579 17 SELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKEY--EAL 94
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 1907170192 595 ADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKE 652
Cdd:COG1579 95 QKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELA 152
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
507-728 |
5.88e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 43.67 E-value: 5.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 507 ETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQ------ADT 580
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERReelgerARA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 581 TNTDTALTTLEEALADKE------RTIERLKEQRDRDerekQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHA 654
Cdd:COG3883 95 LYRSGGSVSYLDVLLGSEsfsdflDRLSALSKIADAD----ADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAK 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907170192 655 SSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASPEMSDRIQQLEREISRYKDESSKAQT 728
Cdd:COG3883 171 AELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 244
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
510-894 |
6.84e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 43.75 E-value: 6.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 510 LNKKTKQIQDMAEEKGTQAgEIHDLKDMLDVKER---KVNVLQKKIENLQEQLRDKEKQMSSLKERVKSlqadttntdta 586
Cdd:PRK11281 45 LDALNKQKLLEAEDKLVQQ-DLEQTLALLDKIDRqkeETEQLKQQLAQAPAKLRQAQAELEALKDDNDE----------- 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 587 ltTLEEALADKE-RTIERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKE--HASSLASSGLK 663
Cdd:PRK11281 113 --ETRETLSTLSlRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNllKGGKVGGKALR 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 664 KDSR------LKTLEIALEQKKEEcLKMESQLkkahEATLEARASpEMSDRIQQLEREIsrykdesskaqtevdrllEIL 737
Cdd:PRK11281 191 PSQRvllqaeQALLNAQNDLQRKS-LEGNTQL----QDLLQKQRD-YLTARIQRLEHQL------------------QLL 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 738 KEVENEKNDK--DKKIAELERQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSdssqqlQDSLRKKD--DRIEE 813
Cdd:PRK11281 247 QEAINSKRLTlsEKTVQEAQSQDEAARIQANPLVAQELEINLQLSQRLLKATEKLNTLT------QQNLRVKNwlDRLTQ 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 814 LEEALREsvQITAER-EMVLA-----QEESARTNAE-----KQVEELLMAMEKVKQELESMK------AKLSSTQQSLAE 876
Cdd:PRK11281 321 SERNIKE--QISVLKgSLLLSrilyqQQQALPSADLieglaDRIADLRLEQFEINQQRDALFqpdayiDKLEAGHKSEVT 398
|
410 420
....*....|....*....|
gi 1907170192 877 KETH--LTNLRAERRKHLEE 894
Cdd:PRK11281 399 DEVRdaLLQLLDERRELLDQ 418
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
375-574 |
6.85e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.21 E-value: 6.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 375 AKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSSEEREEEMKQMEVYRSHSKFMKNKIgqvkQELSRKDTEL 454
Cdd:COG4942 48 KEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLRAL----YRLGRQPPLA 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 455 LALQTKletltnQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDL 534
Cdd:COG4942 124 LLLSPE------DFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAER 197
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1907170192 535 KDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVK 574
Cdd:COG4942 198 QKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAA 237
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
604-817 |
7.41e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.47 E-value: 7.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 604 LKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSE--KEASLLDIKEHASSLASSGLKKDSRLKTLEIALEQKKEE 681
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEfrQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEAR 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 682 CLKMESQLKKAHEATLEARASPEMSD---RIQQLEREI----SRYKDESSK---AQTEVDRLL-EILKEVENEKNDKDKK 750
Cdd:COG3206 242 LAALRAQLGSGPDALPELLQSPVIQQlraQLAELEAELaelsARYTPNHPDviaLRAQIAALRaQLQQEAQRILASLEAE 321
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907170192 751 IAELERQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREdslsdSSQQLQDSLRKkddRIEELEEA 817
Cdd:COG3206 322 LEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVE-----VARELYESLLQ---RLEEARLA 380
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
392-738 |
7.80e-04 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 43.35 E-value: 7.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 392 SSMERGLRDLEEEIQMLKSNGALSSEEREEEMKQMEVYRSHSKFMKNKIGQVKQELSRKDTELLALQTKLETLTNQFSDS 471
Cdd:pfam07888 34 NRLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEEL 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 472 KQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKK 551
Cdd:pfam07888 114 SEEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRSLSKE 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 552 IENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEeidtykkdlkdLRE 631
Cdd:pfam07888 194 FQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAENEALLEELRSLQERLNASERKVEGLGEE-----------LSS 262
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 632 KVSLLQGDLSEKEASLLDIKEHASSLASSGLK-KDSRLK------TLEIALEQKKEECLKMESQLKKAHEATLEARASPe 704
Cdd:pfam07888 263 MAAQRDRTQAELHQARLQAAQLTLQLADASLAlREGRARwaqereTLQQSAEADKDRIEKLSAELQRLEERLQEERMER- 341
|
330 340 350
....*....|....*....|....*....|....
gi 1907170192 705 msdriQQLEREISRYKDESSKAQTEVDRLLEILK 738
Cdd:pfam07888 342 -----EKLEVELGREKDCNRVQLSESRRELQELK 370
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
391-874 |
7.85e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 43.74 E-value: 7.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 391 ISSMERGLRDLEEEIQMLKSNGA----------LSSEEREEEMKQMEVYRSHSKFMKNKIGQVKQELSRKDTELLALQTK 460
Cdd:PRK01156 161 INSLERNYDKLKDVIDMLRAEISnidyleeklkSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSA 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 461 LETLTNQFSDSKQHIEVLKESltakEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDML-- 538
Cdd:PRK01156 241 LNELSSLEDMKNRYESEIKTA----ESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDIENKKQILsn 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 539 -DVKERKVNVLQKKIENLQ---EQLRDKEKQMSSLKERVKSLQadttntdtaltTLEEALADKERTIERLKEQRDRDERE 614
Cdd:PRK01156 317 iDAEINKYHAIIKKLSVLQkdyNDYIKKKSRYDDLNNQILELE-----------GYEMDYNSYLKSIESLKKKIEEYSKN 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 615 KQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLE--IALEQKKEECLKMESQLKKA 692
Cdd:PRK01156 386 IERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSrnMEMLNGQSVCPVCGTTLGEE 465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 693 HEATLEARASPEMS---DRIQQLEREISRYKDESSKAQTEVDRLL-EILKEVENEKNDKDKKIAELERQVKDQNK-KVAN 767
Cdd:PRK01156 466 KSNHIINHYNEKKSrleEKIREIEIEVKDIDEKIVDLKKRKEYLEsEEINKSINEYNKIESARADLEDIKIKINElKDKH 545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 768 LKHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVE 847
Cdd:PRK01156 546 DKYEEIKNRYKSLKLEDLDSKRTSWLNALAVISLIDIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIE 625
|
490 500
....*....|....*....|....*..
gi 1907170192 848 ELLMAMEKVKQELESMKAKLSSTQQSL 874
Cdd:PRK01156 626 NEANNLNNKYNEIQENKILIEKLRGKI 652
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
708-852 |
8.13e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.22 E-value: 8.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 708 RIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKDQ--NKKVANLKHKEQVEKKKSAQMLEE 785
Cdd:COG1579 32 ELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVrnNKEYEALQKEIESLKRRISDLEDE 111
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907170192 786 ARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMA 852
Cdd:COG1579 112 ILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAKIPPELLA 178
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
209-421 |
8.79e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 43.08 E-value: 8.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 209 TIWKEQYRVVQEENQHMQMTIQALQDELRIQRDlnqlFQQDSSSRTGEPcVAELTE------ENFQRLHAEHERQAKELF 282
Cdd:PHA02562 170 KLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNK----NIEEQRKKNGEN-IARKQNkydelvEEAKTIKAEIEELTDELL 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 283 LLRKTLEEME---LRIETQKQTLNARDESIKKLLEMLQSKGLSAKATEEDHERTRRLAEAEMHVHHLESLLEQKEKENNM 359
Cdd:PHA02562 245 NLVMDIEDPSaalNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDE 324
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907170192 360 LREEMHRRFENapdSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSSEEREE 421
Cdd:PHA02562 325 LEEIMDEFNEQ---SKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAK 383
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
283-607 |
9.17e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.57 E-value: 9.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 283 LLRKTLEEMElrieTQKQTLNARDESIKKLLEMLQSKGLSAKATeeDHERTRRLAEAEMHVHHLESLLEQKEKENNMLRE 362
Cdd:pfam15921 476 MLRKVVEELT----AKKMTLESSERTVSDLTASLQEKERAIEAT--NAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTE 549
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 363 EMHRRFENAPDSAKTKALQTVIEMKDSKI--------------SSMERGLRDLEEEIQMLKsngaLSSEEREEEMKQMEV 428
Cdd:pfam15921 550 CEALKLQMAEKDKVIEILRQQIENMTQLVgqhgrtagamqvekAQLEKEINDRRLELQEFK----ILKDKKDAKIRELEA 625
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 429 YRSHSKFMKNKIGQVKQELSRK----DTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRaaiLQTEVDALRLRLE 504
Cdd:pfam15921 626 RVSDLELEKVKLVNAGSERLRAvkdiKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEE---METTTNKLKMQLK 702
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 505 EKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTD 584
Cdd:pfam15921 703 SAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVA 782
|
330 340
....*....|....*....|...
gi 1907170192 585 TALTTLEEALADKERTIERLKEQ 607
Cdd:pfam15921 783 TEKNKMAGELEVLRSQERRLKEK 805
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
277-528 |
1.20e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 1.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 277 QAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQskglsaKATEEDHERTRRLAEAEMHVHHLESLLEQKEKE 356
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLA------ALERRIAALARRIRALEQELAALEAELAELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 357 NNMLREEMHRRFENapdsaktkalqtviemkdskissMERGLRDLEEEIQMLKSNGALSSEEREEEMKQMEVYRSHSKFM 436
Cdd:COG4942 92 IAELRAELEAQKEE-----------------------LAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPAR 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 437 KNKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQ 516
Cdd:COG4942 149 REQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEAL 228
|
250
....*....|..
gi 1907170192 517 IQDMAEEKGTQA 528
Cdd:COG4942 229 IARLEAEAAAAA 240
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
276-888 |
1.65e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 42.47 E-value: 1.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 276 RQAKELFLLRKTLEEMELRIETQKQTLNAR-DESIKKLLEMLQ-----------SKGLSAKATEEDHERTRRLAEAEMHV 343
Cdd:pfam01576 324 KREQEVTELKKALEEETRSHEAQLQEMRQKhTQALEELTEQLEqakrnkanlekAKQALESENAELQAELRTLQQAKQDS 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 344 HHLESLLEQKEKENNMLREEMHRRFENAPDsaKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSSEEREEEM 423
Cdd:pfam01576 404 EHKRKKLEGQLQELQARLSESERQRAELAE--KLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEET 481
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 424 KQMEVYRSHSKFMKNKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRL 503
Cdd:pfam01576 482 RQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQL 561
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 504 EEKE-------------------------------TMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDV----KERKVNVL 548
Cdd:pfam01576 562 EEKAaaydklektknrlqqelddllvdldhqrqlvSNLEKKQKKFDQMLAEEKAISARYAEERDRAEAeareKETRALSL 641
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 549 QKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEIDT------- 621
Cdd:pfam01576 642 ARALEEALEAKEELERTNKQLRAEMEDLVSSKDDVGKNVHELERSKRALEQQVEEMKTQLEELEDELQATEDAklrlevn 721
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 622 -------YKKDLKDL----REKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIALE---QKKEECL---- 683
Cdd:pfam01576 722 mqalkaqFERDLQARdeqgEEKRRQLVKQVRELEAELEDERKQRAQAVAAKKKLELDLKELEAQIDaanKGREEAVkqlk 801
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 684 KMESQLKKAHEATLEARASpemSDRIQQLEREISRykdESSKAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNK 763
Cdd:pfam01576 802 KLQAQMKDLQRELEEARAS---RDEILAQSKESEK---KLKNLEAELLQLQEDLAASERARRQAQQERDELADEIASGAS 875
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 764 KVANLKHKEQVEKKKSAQMLEEArrreDSLSDSSQQLQDSLRKKDDRIEELeealreSVQITAEREMvLAQEESARTNAE 843
Cdd:pfam01576 876 GKSALQDEKRRLEARIAQLEEEL----EEEQSNTELLNDRLRKSTLQVEQL------TTELAAERST-SQKSESARQQLE 944
|
650 660 670 680
....*....|....*....|....*....|....*....|....*.
gi 1907170192 844 KQVEELLMAMEKVKQELES-MKAKLSSTQQSLAEKETHLTNLRAER 888
Cdd:pfam01576 945 RQNKELKAKLQEMEGTVKSkFKSSIAALEAKIAQLEEQLEQESRER 990
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
704-910 |
1.90e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 42.22 E-value: 1.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 704 EMSDRIQQLEREISRYK-DESSKAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKD-QNKKVANLKHKEQVEKKKSAQ 781
Cdd:PRK05771 54 KLSEALDKLRSYLPKLNpLREEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISElENEIKELEQEIERLEPWGNFD 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 782 M-LEEARRREDSLSD----SSQQLQDSLRKKDDRIEELEEALRESV----------QITAEREMVLAQEESARTNAEKQV 846
Cdd:PRK05771 134 LdLSLLLGFKYVSVFvgtvPEDKLEELKLESDVENVEYISTDKGYVyvvvvvlkelSDEVEEELKKLGFERLELEEEGTP 213
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907170192 847 EELLmamEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEmKQEALL-AAISEK 910
Cdd:PRK05771 214 SELI---REIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELE-RAEALSkFLKTDK 274
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
790-960 |
1.96e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.31 E-value: 1.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 790 EDSLSDSSQQLQDSLRKKDDRIEELEEALREsvqitAEREMVLAQEESARTNAEKQVEELLmamekvkQELESMKAKLSS 869
Cdd:COG3206 163 EQNLELRREEARKALEFLEEQLPELRKELEE-----AEAALEEFRQKNGLVDLSEEAKLLL-------QQLSELESQLAE 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 870 TQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEK--DANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQQ 947
Cdd:COG3206 231 ARAELAEAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQlaELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQE 310
|
170
....*....|...
gi 1907170192 948 TQNRMKLMADNYE 960
Cdd:COG3206 311 AQRILASLEAELE 323
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
272-744 |
2.00e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.06 E-value: 2.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 272 AEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGL---SAKATEEDHERTRRLAEAEMHVHHLES 348
Cdd:COG4717 81 KEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLyqeLEALEAELAELPERLEELEERLEELRE 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 349 LLEQKEKENNMLREEMHRRFEnapdsaktkALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSSEEREEEMKQMEV 428
Cdd:COG4717 161 LEEELEELEAELAELQEELEE---------LLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQ 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 429 YRShskfmKNKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKesltakeqRAAILQTEVDALRLRLEEKET 508
Cdd:COG4717 232 LEN-----ELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAG--------VLFLVLGLLALLFLLLAREKA 298
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 509 MLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKslqadttntdtalt 588
Cdd:COG4717 299 SLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQ-------------- 364
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 589 tleeaLADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASslASSGLKKDSRL 668
Cdd:COG4717 365 -----LEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALD--EEELEEELEEL 437
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907170192 669 KTLEIALEQKKEECLKMESQLKKAHEATLEARASPEMSDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEK 744
Cdd:COG4717 438 EEELEELEEELEELREELAELEAELEQLEEDGELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYREER 513
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
415-951 |
2.36e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 42.26 E-value: 2.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 415 SSEEREE---EMKQMEVYRSHSKFMKNKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAI 491
Cdd:TIGR00618 161 KSKEKKEllmNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQ 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 492 LQTEVDALRLRLEEKETmLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDvKERKVNVLQKKIENLQEQLRDKEKQMSSLKE 571
Cdd:TIGR00618 241 SHAYLTQKREAQEEQLK-KQQLLKQLRARIEELRAQEAVLEETQERIN-RARKAAPLAAHIKAVTQIEQQAQRIHTELQS 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 572 RVKSLqADTTNTDTALTTLEEALADKERTIERLKEQRD--RDEREKQEEIDTYKKDLKDLREKVSLLQGD---LSEKEAS 646
Cdd:TIGR00618 319 KMRSR-AKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIhiRDAHEVATSIREISCQQHTLTQHIHTLQQQkttLTQKLQS 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 647 LLDIKEHASSLASSGLKKDSRLKTLEIALE--------QKKEECLKMESQLKKAHEATLEARASPEMS----DRIQQLER 714
Cdd:TIGR00618 398 LCKELDILQREQATIDTRTSAFRDLQGQLAhakkqqelQQRYAELCAAAITCTAQCEKLEKIHLQESAqslkEREQQLQT 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 715 EISRYKDESSKAQTEVDRLLEI------LKEVENEKNDKDKKIAE----------LERQVKDQNKKVANLKHKEQVEKKK 778
Cdd:TIGR00618 478 KEQIHLQETRKKAVVLARLLELqeepcpLCGSCIHPNPARQDIDNpgpltrrmqrGEQTYAQLETSEEDVYHQLTSERKQ 557
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 779 SAQMLEEARRREDSLSDSSQQLQdSLRKKDDRIEELEEALRESVQITAEREMVLA---QEESARTNAEKQVEELLMAMEK 855
Cdd:TIGR00618 558 RASLKEQMQEIQQSFSILTQCDN-RSKEDIPNLQNITVRLQDLTEKLSEAEDMLAceqHALLRKLQPEQDLQDVRLHLQQ 636
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 856 VKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKhlEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKR 935
Cdd:TIGR00618 637 CSQELALKLTALHALQLTLTQERVREHALSIRVLP--KELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIE 714
|
570
....*....|....*.
gi 1907170192 936 EKDRLVQQLKQQTQNR 951
Cdd:TIGR00618 715 EYDREFNEIENASSSL 730
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
534-950 |
3.01e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 41.54 E-value: 3.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 534 LKDMLDVKERKVNVLQKKIENLQEQLRDKEKQM--------------SSLKERVKSLQADTTNTDTALTTLEEALADKER 599
Cdd:TIGR04523 24 YKNIANKQDTEEKQLEKKLKTIKNELKNKEKELknldknlnkdeekiNNSNNKIKILEQQIKDLNDKLKKNKDKINKLNS 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 600 TIERLKEQRDRDEREK---QEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIALE 676
Cdd:TIGR04523 104 DLSKINSEIKNDKEQKnklEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKL 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 677 QKKEECLKMESQLKKAH------------EATLEARASP------EMSDRIQQLEREISRYKDESSKAQTEVDRLLEILK 738
Cdd:TIGR04523 184 NIQKNIDKIKNKLLKLElllsnlkkkiqkNKSLESQISElkkqnnQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQN 263
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 739 EVENEKNDKDKKIAELERQVKDQNKKVANLKHKEQVEKKKSAQML-----EEARRREDSLSDSSQQL---QDSLRKKDDR 810
Cdd:TIGR04523 264 KIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWnkelkSELKNQEKKLEEIQNQIsqnNKIISQLNEQ 343
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 811 IEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRK 890
Cdd:TIGR04523 344 ISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKEL 423
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907170192 891 HLEEVLEMKQEALLAA-----ISEKDA--NIALLELSSSKKKTQEEVAALKREKDRLVQQLKQQTQN 950
Cdd:TIGR04523 424 LEKEIERLKETIIKNNseikdLTNQDSvkELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKE 490
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
591-951 |
3.07e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 41.88 E-value: 3.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 591 EEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKT 670
Cdd:pfam02463 182 TENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 671 LEIALEQKKEECLKMESQLKKaheatlearaspEMSDRIQQLEREIsryKDESSKAQTEVDRLLEILKEVENEKNDKDKK 750
Cdd:pfam02463 262 KEEEKLAQVLKENKEEEKEKK------------LQEEELKLLAKEE---EELKSELLKLERRKVDDEEKLKESEKEKKKA 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 751 IAELErqvkdqnkkvanlkhKEQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREM 830
Cdd:pfam02463 327 EKELK---------------KEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAK 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 831 VLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSStQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEK 910
Cdd:pfam02463 392 LKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELE-ILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKS 470
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 1907170192 911 DANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQQTQNR 951
Cdd:pfam02463 471 EDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKV 511
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
538-781 |
3.16e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 41.35 E-value: 3.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 538 LDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQE 617
Cdd:COG3883 18 IQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYR 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 618 EIDTYK--------KDLKDLREKVSLLQgDLSEKEASLLDikehasslassglkkdsRLKTLEIALEQKKEECLKMESQL 689
Cdd:COG3883 98 SGGSVSyldvllgsESFSDFLDRLSALS-KIADADADLLE-----------------ELKADKAELEAKKAELEAKLAEL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 690 KKAHEatlearaspEMSDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVANLK 769
Cdd:COG3883 160 EALKA---------ELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAA 230
|
250
....*....|..
gi 1907170192 770 HKEQVEKKKSAQ 781
Cdd:COG3883 231 AAAAAAAAAAAA 242
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
684-896 |
4.16e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 41.19 E-value: 4.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 684 KMESQLKKAheatlEARASPEMSDRIQQLEREISrYKDESSKAQTEVDRLLEILkevenekNDKDKKIAELERQVKDQNK 763
Cdd:PRK10929 27 QITQELEQA-----KAAKTPAQAEIVEALQSALN-WLEERKGSLERAKQYQQVI-------DNFPKLSAELRQQLNNERD 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 764 KVANLKHK------EQVEKKKSAQMLEEARR--------RE--DSLSDSSQQlQDSLRKKDDRIEELEEALRESVQITAE 827
Cdd:PRK10929 94 EPRSVPPNmstdalEQEILQVSSQLLEKSRQaqqeqdraREisDSLSQLPQQ-QTEARRQLNEIERRLQTLGTPNTPLAQ 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 828 REMVLAQEESARTNAekQVEELLMAM---------------------EKVKQELESMKAKLSSTQQSLAEKETHLTNLRA 886
Cdd:PRK10929 173 AQLTALQAESAALKA--LVDELELAQlsannrqelarlrselakkrsQQLDAYLQALRNQLNSQRQREAERALESTELLA 250
|
250
....*....|
gi 1907170192 887 ERRKHLEEVL 896
Cdd:PRK10929 251 EQSGDLPKSI 260
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
632-957 |
4.73e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 40.65 E-value: 4.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 632 KVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASPEMSDR-IQ 710
Cdd:pfam07888 28 RAELLQNRLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKeLS 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 711 QLEREISRYKDESSKAQTE-VDRLLEILKEVENEKNDKDKKIAELERqVKDQNKKVANLKHKEQVEKKKSAQMLEEARRR 789
Cdd:pfam07888 108 ASSEELSEEKDALLAQRAAhEARIRELEEDIKTLTQRVLERETELER-MKERAKKAGAQRKEEEAERKQLQAKLQQTEEE 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 790 EDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQeesartnaekqveellmaMEKVKQELESMKAKLSS 869
Cdd:pfam07888 187 LRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAE------------------NEALLEELRSLQERLNA 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 870 TQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLE-----------LSSSKKKTQEEVAALKREKD 938
Cdd:pfam07888 249 SERKVEGLGEELSSMAAQRDRTQAELHQARLQAAQLTLQLADASLALREgrarwaqeretLQQSAEADKDRIEKLSAELQ 328
|
330
....*....|....*....
gi 1907170192 939 RLVQQLKQQTQNRMKLMAD 957
Cdd:pfam07888 329 RLEERLQEERMEREKLEVE 347
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
793-956 |
4.77e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.52 E-value: 4.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 793 LSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQ 872
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 873 SLAEKETHLTNLRAERRKHLEEVLEMKQ----EALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQQT 948
Cdd:COG4942 91 EIAELRAELEAQKEELAELLRALYRLGRqpplALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELE 170
|
....*...
gi 1907170192 949 QNRMKLMA 956
Cdd:COG4942 171 AERAELEA 178
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
334-643 |
5.70e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.67 E-value: 5.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 334 RRLAEAEMHVHHLESLLEQKEKEnnmlREEMHRRFEnapdsaktkALQTVIEMKDSKI--SSMERGLRDLEEEIQML-KS 410
Cdd:COG4913 617 AELAELEEELAEAEERLEALEAE----LDALQERRE---------ALQRLAEYSWDEIdvASAEREIAELEAELERLdAS 683
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 411 NGALSS--EEREEEMKQMEVYRSHSKFMKNKIGQVKQELSRKDTELLALQTKLETLTNQFS-DSKQHIEVLKESLTAKEQ 487
Cdd:COG4913 684 SDDLAAleEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARlELRALLEERFAAALGDAV 763
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 488 RAAI---LQTEVDALRLRLEEKETMLNKKTKQIQ----DMAEEKGTQAGEIHDLKDMLDvkerkvNVLQKKIENLQEQLR 560
Cdd:COG4913 764 ERELrenLEERIDALRARLNRAEEELERAMRAFNrewpAETADLDADLESLPEYLALLD------RLEEDGLPEYEERFK 837
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 561 DKEKQMSslKERVKSLQADTtntdtalttlEEALADKERTIERLKE-------QRDRD-----EREKQEEIDTYKKDLKD 628
Cdd:COG4913 838 ELLNENS--IEFVADLLSKL----------RRAIREIKERIDPLNDslkripfGPGRYlrleaRPRPDPEVREFRQELRA 905
|
330
....*....|....*
gi 1907170192 629 LREKVSLLQGDLSEK 643
Cdd:COG4913 906 VTSGASLFDEELSEA 920
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
741-879 |
5.97e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 40.71 E-value: 5.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 741 ENEKNDKDKKIAELERQVKDQNKKVAnlkhkeqvekkKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRE 820
Cdd:PRK04863 278 ANERRVHLEEALELRRELYTSRRQLA-----------AEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQ 346
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907170192 821 SVQIT------AEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKET 879
Cdd:PRK04863 347 QEKIEryqadlEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQT 411
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
504-613 |
6.32e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 40.53 E-value: 6.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 504 EEKETMLNKKTKQIQDMAEEKGTQAG-EIHDLKDMLdvkERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTN 582
Cdd:PRK12704 38 EEAKRILEEAKKEAEAIKKEALLEAKeEIHKLRNEF---EKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEK 114
|
90 100 110
....*....|....*....|....*....|..
gi 1907170192 583 TDTALTTLEEALADKERTIERL-KEQRDRDER 613
Cdd:PRK12704 115 KEKELEQKQQELEKKEEELEELiEEQLQELER 146
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
474-742 |
7.36e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 40.30 E-value: 7.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 474 HIEVLKESLTAKEQRAAI-LQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAgeIHDLKDMLDVKERKVNVLQKKI 552
Cdd:PRK05771 32 HIEDLKEELSNERLRKLRsLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEEL--IKDVEEELEKIEKEIKELEEEI 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 553 ENLQEQLRDKEKQMSSLkERVKSLqadttntdtalTTLEEALADKERTIERLKE-QRDRDEREKQEEIDTYKKDLKDLRE 631
Cdd:PRK05771 110 SELENEIKELEQEIERL-EPWGNF-----------DLDLSLLLGFKYVSVFVGTvPEDKLEELKLESDVENVEYISTDKG 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 632 KVSLLQGDLSEKEASLLDIkehassLASSGLKKD--SRLKTLEIALEQKKEEclkmESQLKKaheatlearaspemsdRI 709
Cdd:PRK05771 178 YVYVVVVVLKELSDEVEEE------LKKLGFERLelEEEGTPSELIREIKEE----LEEIEK----------------ER 231
|
250 260 270
....*....|....*....|....*....|...
gi 1907170192 710 QQLEREISRYKDESSKAQTEVDRLLEILKEVEN 742
Cdd:PRK05771 232 ESLLEELKELAKKYLEELLALYEYLEIELERAE 264
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
699-827 |
8.67e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 40.20 E-value: 8.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 699 ARASPEMSDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELErQVKDQNKKVANLKHKEQVE--K 776
Cdd:PRK00409 505 EEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQ-EEEDKLLEEAEKEAQQAIKeaK 583
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1907170192 777 KKSAQMLEEAR--RREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAE 827
Cdd:PRK00409 584 KEADEIIKELRqlQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEE 636
|
|
| PRK08475 |
PRK08475 |
F0F1 ATP synthase subunit B; Validated |
890-961 |
8.88e-03 |
|
F0F1 ATP synthase subunit B; Validated
Pssm-ID: 236272 [Multi-domain] Cd Length: 167 Bit Score: 38.46 E-value: 8.88e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907170192 890 KHLEEVlemkQEALLAAISEKDAniALLELSSSKKKTQEEVAALKREKDRLVQQLKQQTQNRMKLMADNYED 961
Cdd:PRK08475 60 KRLEEI----QEKLKESKEKKED--ALKKLEEAKEKAELIVETAKKEAYILTQKIEKQTKDDIENLIKSFEE 125
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
369-972 |
9.00e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 40.42 E-value: 9.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 369 ENAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALS----------SEEREEEMKQMEVYRSHSKFMKN 438
Cdd:TIGR01612 690 DNTEDKAKLDDLKSKIDKEYDKIQNMETATVELHLSNIENKKNELLDiiveikkhihGEINKDLNKILEDFKNKEKELSN 769
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 439 KIgqvkQELSRKDTELLALQTKLETLTNQFSDskqhievlkesltakeqraailQTEVDalRLRLEEKETMLNKKTKQIQ 518
Cdd:TIGR01612 770 KI----NDYAKEKDELNKYKSKISEIKNHYND----------------------QINID--NIKDEDAKQNYDKSKEYIK 821
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 519 DMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSlqadttntdtalTTLEEALADKE 598
Cdd:TIGR01612 822 TISIKEDEIFKIINEMKFMKDDFLNKVDKFINFENNCKEKIDSEHEQFAELTNKIKA------------EISDDKLNDYE 889
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 599 RTIERLK----EQRDRDEREKQ-----EEIDTYKKDLKDLREKVSLL---QGDLSEKeaslldIKEHASSLASSGLKKDS 666
Cdd:TIGR01612 890 KKFNDSKslinEINKSIEEEYQnintlKKVDEYIKICENTKESIEKFhnkQNILKEI------LNKNIDTIKESNLIEKS 963
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 667 RLKTLEIALEQKKEEclkMESQLKKAHEATLEARASpEMSDRIQQLEREISRYK--------DESSKAQTEVDRLLE--- 735
Cdd:TIGR01612 964 YKDKFDNTLIDKINE---LDKAFKDASLNDYEAKNN-ELIKYFNDLKANLGKNKenmlyhqfDEKEKATNDIEQKIEdan 1039
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 736 ----------------ILKEVENE--KNDK---DKKIAELERQVKDQNKKVANLKHK--EQVEKKKSAQMLEEARRREDS 792
Cdd:TIGR01612 1040 knipnieiaihtsiynIIDEIEKEigKNIEllnKEILEEAEINITNFNEIKEKLKHYnfDDFGKEENIKYADEINKIKDD 1119
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 793 LSDSSQQLqdslrkkDDRIEELEEALRESVQITAEREMVLAQEESARTNA---------EKQVEELLMAMEKVKQELESM 863
Cdd:TIGR01612 1120 IKNLDQKI-------DHHIKALEEIKKKSENYIDEIKAQINDLEDVADKAisnddpeeiEKKIENIVTKIDKKKNIYDEI 1192
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 864 K------AKLSSTQQSLAE-KETHLTNLRAERRKHLEEVLEMKQEAlLAAISEKDANIAllELSSSKKKTQEEVAALKRE 936
Cdd:TIGR01612 1193 KkllneiAEIEKDKTSLEEvKGINLSYGKNLGKLFLEKIDEEKKKS-EHMIKAMEAYIE--DLDEIKEKSPEIENEMGIE 1269
|
650 660 670
....*....|....*....|....*....|....*.
gi 1907170192 937 KDrlvqqlKQQTQNRMKLMADNYEDDHFRSSRSNQT 972
Cdd:TIGR01612 1270 MD------IKAEMETFNISHDDDKDHHIISKKHDEN 1299
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
448-841 |
9.44e-03 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 39.94 E-value: 9.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 448 SRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQ 527
Cdd:COG5185 204 VNSIKESETGNLGSESTLLEKAKEIINIEEALKGFQDPESELEDLAQTSDKLEKLVEQNTDLRLEKLGENAESSKRLNEN 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 528 AGEihdlkdmldvkerkvnvLQKKIENLQEQLRDKEKQMSslKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQ 607
Cdd:COG5185 284 ANN-----------------LIKQFENTKEKIAEYTKSID--IKKATESLEEQLAAAEAEQELEESKRETETGIQNLTAE 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 608 RDRDEREKQEEIDTYKKDLKDLREKVsllqgDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMES 687
Cdd:COG5185 345 IEQGQESLTENLEAIKEEIENIVGEV-----ELSKSSEELDSFKDTIESTKESLDEIPQNQRGYAQEILATLEDTLKAAD 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907170192 688 QLKKAHEATLEARAS--PEMSDRIQQLEREI--SRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNK 763
Cdd:COG5185 420 RQIEELQRQIEQATSsnEEVSKLLNELISELnkVMREADEESQSRLEEAYDEINRSVRSKKEDLNEELTQIESRVSTLKA 499
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907170192 764 KVANLKHKEQVEKKKSAQMLEEARRREDSLSDssqqlqdslRKKDDRIEELEEALRESVQITAEREMVLAQEESARTN 841
Cdd:COG5185 500 TLEKLRAKLERQLEGVRSKLDQVAESLKDFMR---------ARGYAHILALENLIPASELIQASNAKTDGQAANLRTA 568
|
|
| |
