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Conserved domains on  [gi|1907150465|ref|XP_036018980|]
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rap1 GTPase-GDP dissociation stimulator 1 isoform X3 [Mus musculus]

Protein Classification

armadillo/beta-catenin-like repeat-containing protein( domain architecture ID 10453181)

armadillo/beta-catenin-like repeat-containing protein; similar to human armadillo repeat-containing protein 1, human radial spoke head 14 homolog, and Bos taurus Rap1 GTPase-GDP dissociation stimulator 1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 86-117 5.52e-05

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


:

Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 40.13  E-value: 5.52e-05
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1907150465  86 VDAGLISPLVQLLNSKDQEVLLQTGRALGNIC 117
Cdd:pfam00514   9 IEAGAVPPLVRLLSSPDEEVQEEAAWALSNLA 40
Vitellogenin_N super family cl44413
Lipoprotein amino terminal region; This family contains regions from: Vitellogenin, Microsomal ...
 226-393 8.21e-05

Lipoprotein amino terminal region; This family contains regions from: Vitellogenin, Microsomal triglyceride transfer protein and apolipoprotein B-100. These proteins are all involved in lipid transport. This family contains the LV1n chain from lipovitellin, that contains two structural domains.


The actual alignment was detected with superfamily member pfam01347:

Pssm-ID: 460170 [Multi-domain]  Cd Length: 582  Bit Score: 44.57  E-value: 8.21e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907150465 226 EELVKLFKKQIEHDKREMIFEvlaplaenDAiklqLVEAGLVECLLEIVQqKVDSNKeddVAELKTASDLMVLLLL---G 302
Cdd:pfam01347 337 EQIWRQLYQNKPKYRRWPAFL--------DA----VAQAGTGPALKFIKQ-WIKSKK---ITGLEAAQVLAVLPHArypT 400

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907150465 303 DESMQKLFEGGKGSVFQrvlswipsNNHQLQLAGALAIANFAR----NDGNCIHMVDNgIVEKLMDLLDRHVEDGNVTVQ 378
Cdd:pfam01347 401 EEYMKALFELAESPEVK--------NQPYLNTSALLAYGSLVRkycvNNPSCPREFEE-YLPPLAQKLKEAVSKGDSEKI 471

                         170
                  ....*....|....*
gi 1907150465 379 HAALSALRNLAIPAS 393
Cdd:pfam01347 472 QLYLKALGNAGHPES 486
PLN03200 super family cl33659
cellulose synthase-interactive protein; Provisional
 42-264 4.90e-04

cellulose synthase-interactive protein; Provisional


The actual alignment was detected with superfamily member PLN03200:

Pssm-ID: 215629 [Multi-domain]  Cd Length: 2102  Bit Score: 42.78  E-value: 4.90e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907150465   42 SEKIQGSGILQLFANLLTPQASCTAKVADIIAEVAKNEFMRIPCV-DAGLISPLVQLLNSK-DQEVLLQTGRALGNICYD 119
Cdd:PLN03200   183 SATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVlDAGAVKQLLKLLGQGnEVSVRAEAAGALEALSSQ 262

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907150465  120 SHEGRSAVDQAGGAQIVIDHLRSlcgrtdPASEKLMTVFCGMLMNYSnendsLQAQLISMGVIPTLVKLLGIHCHNAALT 199
Cdd:PLN03200   263 SKEAKQAIADAGGIPALINATVA------PSKEFMQGEFAQALQENA-----MGALANICGGMSALILYLGELSESPRSP 331

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907150465  200 EMCLVAFGNLA-------ELESSKEQFASTNIAEELVKLFKKQIEHDKREMIFEVLAPLAEND--AIKLQLVEA 264
Cdd:PLN03200   332 APIADTLGALAyalmvfdSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAylSRKLNHAEA 405
 
Name Accession Description Interval E-value
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 86-117 5.52e-05

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 40.13  E-value: 5.52e-05
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1907150465  86 VDAGLISPLVQLLNSKDQEVLLQTGRALGNIC 117
Cdd:pfam00514   9 IEAGAVPPLVRLLSSPDEEVQEEAAWALSNLA 40
Vitellogenin_N pfam01347
Lipoprotein amino terminal region; This family contains regions from: Vitellogenin, Microsomal ...
 226-393 8.21e-05

Lipoprotein amino terminal region; This family contains regions from: Vitellogenin, Microsomal triglyceride transfer protein and apolipoprotein B-100. These proteins are all involved in lipid transport. This family contains the LV1n chain from lipovitellin, that contains two structural domains.


Pssm-ID: 460170 [Multi-domain]  Cd Length: 582  Bit Score: 44.57  E-value: 8.21e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907150465 226 EELVKLFKKQIEHDKREMIFEvlaplaenDAiklqLVEAGLVECLLEIVQqKVDSNKeddVAELKTASDLMVLLLL---G 302
Cdd:pfam01347 337 EQIWRQLYQNKPKYRRWPAFL--------DA----VAQAGTGPALKFIKQ-WIKSKK---ITGLEAAQVLAVLPHArypT 400

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907150465 303 DESMQKLFEGGKGSVFQrvlswipsNNHQLQLAGALAIANFAR----NDGNCIHMVDNgIVEKLMDLLDRHVEDGNVTVQ 378
Cdd:pfam01347 401 EEYMKALFELAESPEVK--------NQPYLNTSALLAYGSLVRkycvNNPSCPREFEE-YLPPLAQKLKEAVSKGDSEKI 471

                         170
                  ....*....|....*
gi 1907150465 379 HAALSALRNLAIPAS 393
Cdd:pfam01347 472 QLYLKALGNAGHPES 486
ARM smart00185
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ...
 78-118 1.27e-04

Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.


Pssm-ID: 214547 [Multi-domain]  Cd Length: 41  Bit Score: 38.95  E-value: 1.27e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 1907150465   78 NEFMRIPCVDAGLISPLVQLLNSKDQEVLLQTGRALGNICY 118
Cdd:smart00185   1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41
PLN03200 PLN03200
cellulose synthase-interactive protein; Provisional
 42-264 4.90e-04

cellulose synthase-interactive protein; Provisional


Pssm-ID: 215629 [Multi-domain]  Cd Length: 2102  Bit Score: 42.78  E-value: 4.90e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907150465   42 SEKIQGSGILQLFANLLTPQASCTAKVADIIAEVAKNEFMRIPCV-DAGLISPLVQLLNSK-DQEVLLQTGRALGNICYD 119
Cdd:PLN03200   183 SATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVlDAGAVKQLLKLLGQGnEVSVRAEAAGALEALSSQ 262

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907150465  120 SHEGRSAVDQAGGAQIVIDHLRSlcgrtdPASEKLMTVFCGMLMNYSnendsLQAQLISMGVIPTLVKLLGIHCHNAALT 199
Cdd:PLN03200   263 SKEAKQAIADAGGIPALINATVA------PSKEFMQGEFAQALQENA-----MGALANICGGMSALILYLGELSESPRSP 331

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907150465  200 EMCLVAFGNLA-------ELESSKEQFASTNIAEELVKLFKKQIEHDKREMIFEVLAPLAEND--AIKLQLVEA 264
Cdd:PLN03200   332 APIADTLGALAyalmvfdSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAylSRKLNHAEA 405
ARM smart00185
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ...
 346-389 6.31e-04

Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.


Pssm-ID: 214547 [Multi-domain]  Cd Length: 41  Bit Score: 37.02  E-value: 6.31e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 1907150465  346 NDGNCIHMVDNGIVEKLMDLLDrhveDGNVTVQHAALSALRNLA 389
Cdd:smart00185   1 DDENKQAVVDAGGLPALVELLK----SEDEEVVKEAAWALSNLS 40
SRP1 COG5064
Karyopherin (importin) alpha [Intracellular trafficking and secretion];
86-142 2.68e-03

Karyopherin (importin) alpha [Intracellular trafficking and secretion];


Pssm-ID: 227396 [Multi-domain]  Cd Length: 526  Bit Score: 39.87  E-value: 2.68e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1907150465  86 VDAGLISPLVQLLNSKDQEVLLQTGRALGNICYDSHEGRSAVDQAGGAQIVIDHLRS 142
Cdd:COG5064   154 VDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLS 210
 
Name Accession Description Interval E-value
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 86-117 5.52e-05

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 40.13  E-value: 5.52e-05
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1907150465  86 VDAGLISPLVQLLNSKDQEVLLQTGRALGNIC 117
Cdd:pfam00514   9 IEAGAVPPLVRLLSSPDEEVQEEAAWALSNLA 40
Vitellogenin_N pfam01347
Lipoprotein amino terminal region; This family contains regions from: Vitellogenin, Microsomal ...
 226-393 8.21e-05

Lipoprotein amino terminal region; This family contains regions from: Vitellogenin, Microsomal triglyceride transfer protein and apolipoprotein B-100. These proteins are all involved in lipid transport. This family contains the LV1n chain from lipovitellin, that contains two structural domains.


Pssm-ID: 460170 [Multi-domain]  Cd Length: 582  Bit Score: 44.57  E-value: 8.21e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907150465 226 EELVKLFKKQIEHDKREMIFEvlaplaenDAiklqLVEAGLVECLLEIVQqKVDSNKeddVAELKTASDLMVLLLL---G 302
Cdd:pfam01347 337 EQIWRQLYQNKPKYRRWPAFL--------DA----VAQAGTGPALKFIKQ-WIKSKK---ITGLEAAQVLAVLPHArypT 400

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907150465 303 DESMQKLFEGGKGSVFQrvlswipsNNHQLQLAGALAIANFAR----NDGNCIHMVDNgIVEKLMDLLDRHVEDGNVTVQ 378
Cdd:pfam01347 401 EEYMKALFELAESPEVK--------NQPYLNTSALLAYGSLVRkycvNNPSCPREFEE-YLPPLAQKLKEAVSKGDSEKI 471

                         170
                  ....*....|....*
gi 1907150465 379 HAALSALRNLAIPAS 393
Cdd:pfam01347 472 QLYLKALGNAGHPES 486
ARM smart00185
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ...
 78-118 1.27e-04

Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.


Pssm-ID: 214547 [Multi-domain]  Cd Length: 41  Bit Score: 38.95  E-value: 1.27e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 1907150465   78 NEFMRIPCVDAGLISPLVQLLNSKDQEVLLQTGRALGNICY 118
Cdd:smart00185   1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41
PLN03200 PLN03200
cellulose synthase-interactive protein; Provisional
 42-264 4.90e-04

cellulose synthase-interactive protein; Provisional


Pssm-ID: 215629 [Multi-domain]  Cd Length: 2102  Bit Score: 42.78  E-value: 4.90e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907150465   42 SEKIQGSGILQLFANLLTPQASCTAKVADIIAEVAKNEFMRIPCV-DAGLISPLVQLLNSK-DQEVLLQTGRALGNICYD 119
Cdd:PLN03200   183 SATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVlDAGAVKQLLKLLGQGnEVSVRAEAAGALEALSSQ 262

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907150465  120 SHEGRSAVDQAGGAQIVIDHLRSlcgrtdPASEKLMTVFCGMLMNYSnendsLQAQLISMGVIPTLVKLLGIHCHNAALT 199
Cdd:PLN03200   263 SKEAKQAIADAGGIPALINATVA------PSKEFMQGEFAQALQENA-----MGALANICGGMSALILYLGELSESPRSP 331

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907150465  200 EMCLVAFGNLA-------ELESSKEQFASTNIAEELVKLFKKQIEHDKREMIFEVLAPLAEND--AIKLQLVEA 264
Cdd:PLN03200   332 APIADTLGALAyalmvfdSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAylSRKLNHAEA 405
ARM smart00185
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ...
 346-389 6.31e-04

Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.


Pssm-ID: 214547 [Multi-domain]  Cd Length: 41  Bit Score: 37.02  E-value: 6.31e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 1907150465  346 NDGNCIHMVDNGIVEKLMDLLDrhveDGNVTVQHAALSALRNLA 389
Cdd:smart00185   1 DDENKQAVVDAGGLPALVELLK----SEDEEVVKEAAWALSNLS 40
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 346-389 2.12e-03

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 35.51  E-value: 2.12e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1907150465 346 NDGNCIHMVDNGIVEKLMDLLDrhveDGNVTVQHAALSALRNLA 389
Cdd:pfam00514   1 SPENKQAVIEAGAVPPLVRLLS----SPDEEVQEEAAWALSNLA 40
SRP1 COG5064
Karyopherin (importin) alpha [Intracellular trafficking and secretion];
86-142 2.68e-03

Karyopherin (importin) alpha [Intracellular trafficking and secretion];


Pssm-ID: 227396 [Multi-domain]  Cd Length: 526  Bit Score: 39.87  E-value: 2.68e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1907150465  86 VDAGLISPLVQLLNSKDQEVLLQTGRALGNICYDSHEGRSAVDQAGGAQIVIDHLRS 142
Cdd:COG5064   154 VDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLS 210
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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