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Conserved domains on  [gi|1907132224|ref|XP_036017441|]
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protein PAT1 homolog 1 isoform X3 [Mus musculus]

Protein Classification

PAT1 family protein( domain architecture ID 1001013)

PAT1 family protein similar to Saccharomyces cerevisiae DNA topoisomerase 2-associated protein PAT1, an activator of decapping that functions as a general and active mechanism of translational repression and required for P-body formation

Gene Ontology:  GO:0003723

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PAT1 super family cl37801
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 16-436 3.81e-03

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


The actual alignment was detected with superfamily member pfam09770:

Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 40.02  E-value: 3.81e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907132224  16 EDAFQGLGEE-DEEIDQFNDDTFG---------SGAVDDDW----QEAHERLAELEEKL------PVAADEQTGNGERDE 75
Cdd:pfam09770  42 EDTYDGLGDQlDETGDAFNDDTFGgggggddvsAGPVGKDFdffgQTAKVSDAIEEEQVrfnrqqPAARAAQSSAQPPAS 121

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907132224  76 MDLLGDHEENLAERLSKMV---IENELEDPAImravqtrPVLQPqpgslNSSIWDGSEvlrriRGPLLAQEMPTVSvley 152
Cdd:pfam09770 122 SLPQYQYASQQSQQPSKPVrtgYEKYKEPEPI-------PDLQV-----DASLWGVAP-----KKAAAPAPAPQPA---- 180

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907132224 153 ALPQRPLQGPEDDRDLSE-----RALPRRSTSPIIGSPPVraVPIGTPPKQmavpsfnQQILCPKPVHVRPPMPPRYPAP 227
Cdd:pfam09770 181 AQPASLPAPSRKMMSLEEveaamRAQAKKPAQQPAPAPAQ--PPAAPPAQQ-------AQQQQQFPPQIQQQQQPQQQPQ 251

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907132224 228 YGErisPNQLCSVPNSSLLGHPFPPNVPPVLSPLQRAQLLGGAQlQPGRMSPSQFARVPGfvgsplaaMNPKLLQGRVGQ 307
Cdd:pfam09770 252 QPQ---QHPGQGHPVTILQRPQSPQPDPAQPSIQPQAQQFHQQP-PPVPVQPTQILQNPN--------RLSAARVGYPQN 319

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907132224 308 MLPPAPSFRAFfsapppatpppqqhppgpgphlQNLRPQAPMFRADTTHLHPQHrrLLHQRQlQSRNQH---------RN 378
Cdd:pfam09770 320 PQPGVQPAPAH----------------------QAHRQQGSFGRQAPIITHPQQ--LAQLSE-EEKAAYldeeakrakRN 374

                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907132224 379 lngtgdrgghqssHQDHL-RKDpyANLMLQREKDWVSKIQMMQL---------QSTDPYL-DDFYYQNY 436
Cdd:pfam09770 375 -------------HKIFLlSKD--NGLMTPQDKNFITRIQLQQLvsatgnpneQGTDASLsEDFYYQVY 428
 
Name Accession Description Interval E-value
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 16-436 3.81e-03

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 40.02  E-value: 3.81e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907132224  16 EDAFQGLGEE-DEEIDQFNDDTFG---------SGAVDDDW----QEAHERLAELEEKL------PVAADEQTGNGERDE 75
Cdd:pfam09770  42 EDTYDGLGDQlDETGDAFNDDTFGgggggddvsAGPVGKDFdffgQTAKVSDAIEEEQVrfnrqqPAARAAQSSAQPPAS 121

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907132224  76 MDLLGDHEENLAERLSKMV---IENELEDPAImravqtrPVLQPqpgslNSSIWDGSEvlrriRGPLLAQEMPTVSvley 152
Cdd:pfam09770 122 SLPQYQYASQQSQQPSKPVrtgYEKYKEPEPI-------PDLQV-----DASLWGVAP-----KKAAAPAPAPQPA---- 180

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907132224 153 ALPQRPLQGPEDDRDLSE-----RALPRRSTSPIIGSPPVraVPIGTPPKQmavpsfnQQILCPKPVHVRPPMPPRYPAP 227
Cdd:pfam09770 181 AQPASLPAPSRKMMSLEEveaamRAQAKKPAQQPAPAPAQ--PPAAPPAQQ-------AQQQQQFPPQIQQQQQPQQQPQ 251

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907132224 228 YGErisPNQLCSVPNSSLLGHPFPPNVPPVLSPLQRAQLLGGAQlQPGRMSPSQFARVPGfvgsplaaMNPKLLQGRVGQ 307
Cdd:pfam09770 252 QPQ---QHPGQGHPVTILQRPQSPQPDPAQPSIQPQAQQFHQQP-PPVPVQPTQILQNPN--------RLSAARVGYPQN 319

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907132224 308 MLPPAPSFRAFfsapppatpppqqhppgpgphlQNLRPQAPMFRADTTHLHPQHrrLLHQRQlQSRNQH---------RN 378
Cdd:pfam09770 320 PQPGVQPAPAH----------------------QAHRQQGSFGRQAPIITHPQQ--LAQLSE-EEKAAYldeeakrakRN 374

                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907132224 379 lngtgdrgghqssHQDHL-RKDpyANLMLQREKDWVSKIQMMQL---------QSTDPYL-DDFYYQNY 436
Cdd:pfam09770 375 -------------HKIFLlSKD--NGLMTPQDKNFITRIQLQQLvsatgnpneQGTDASLsEDFYYQVY 428
COG5137 COG5137
Histone chaperone involved in gene silencing [Transcription / Chromatin structure and dynamics] ...
 8-104 6.81e-03

Histone chaperone involved in gene silencing [Transcription / Chromatin structure and dynamics];


Pssm-ID: 227466 [Multi-domain]  Cd Length: 279  Bit Score: 38.44  E-value: 6.81e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907132224   8 EDCPLDEDEDAFQGLGEEDEEIDQFNDDTFGsgavdddwqEAHERLAELEEKlpvaADEQTGNGERDemdllGDHEEnla 87
Cdd:COG5137   172 PDVDNEEEERLEESDGREEEEDEEVGSDSYG---------EGNRELNEEEEE----EAEGSDDGEDV-----VDYEG--- 230

                          90
                  ....*....|....*..
gi 1907132224  88 ERLSKMVIENELEDPAI 104
Cdd:COG5137   231 ERIDKKQGEEEEMEEEV 247
 
Name Accession Description Interval E-value
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 16-436 3.81e-03

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 40.02  E-value: 3.81e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907132224  16 EDAFQGLGEE-DEEIDQFNDDTFG---------SGAVDDDW----QEAHERLAELEEKL------PVAADEQTGNGERDE 75
Cdd:pfam09770  42 EDTYDGLGDQlDETGDAFNDDTFGgggggddvsAGPVGKDFdffgQTAKVSDAIEEEQVrfnrqqPAARAAQSSAQPPAS 121

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907132224  76 MDLLGDHEENLAERLSKMV---IENELEDPAImravqtrPVLQPqpgslNSSIWDGSEvlrriRGPLLAQEMPTVSvley 152
Cdd:pfam09770 122 SLPQYQYASQQSQQPSKPVrtgYEKYKEPEPI-------PDLQV-----DASLWGVAP-----KKAAAPAPAPQPA---- 180

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907132224 153 ALPQRPLQGPEDDRDLSE-----RALPRRSTSPIIGSPPVraVPIGTPPKQmavpsfnQQILCPKPVHVRPPMPPRYPAP 227
Cdd:pfam09770 181 AQPASLPAPSRKMMSLEEveaamRAQAKKPAQQPAPAPAQ--PPAAPPAQQ-------AQQQQQFPPQIQQQQQPQQQPQ 251

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907132224 228 YGErisPNQLCSVPNSSLLGHPFPPNVPPVLSPLQRAQLLGGAQlQPGRMSPSQFARVPGfvgsplaaMNPKLLQGRVGQ 307
Cdd:pfam09770 252 QPQ---QHPGQGHPVTILQRPQSPQPDPAQPSIQPQAQQFHQQP-PPVPVQPTQILQNPN--------RLSAARVGYPQN 319

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907132224 308 MLPPAPSFRAFfsapppatpppqqhppgpgphlQNLRPQAPMFRADTTHLHPQHrrLLHQRQlQSRNQH---------RN 378
Cdd:pfam09770 320 PQPGVQPAPAH----------------------QAHRQQGSFGRQAPIITHPQQ--LAQLSE-EEKAAYldeeakrakRN 374

                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907132224 379 lngtgdrgghqssHQDHL-RKDpyANLMLQREKDWVSKIQMMQL---------QSTDPYL-DDFYYQNY 436
Cdd:pfam09770 375 -------------HKIFLlSKD--NGLMTPQDKNFITRIQLQQLvsatgnpneQGTDASLsEDFYYQVY 428
COG5137 COG5137
Histone chaperone involved in gene silencing [Transcription / Chromatin structure and dynamics] ...
 8-104 6.81e-03

Histone chaperone involved in gene silencing [Transcription / Chromatin structure and dynamics];


Pssm-ID: 227466 [Multi-domain]  Cd Length: 279  Bit Score: 38.44  E-value: 6.81e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907132224   8 EDCPLDEDEDAFQGLGEEDEEIDQFNDDTFGsgavdddwqEAHERLAELEEKlpvaADEQTGNGERDemdllGDHEEnla 87
Cdd:COG5137   172 PDVDNEEEERLEESDGREEEEDEEVGSDSYG---------EGNRELNEEEEE----EAEGSDDGEDV-----VDYEG--- 230

                          90
                  ....*....|....*..
gi 1907132224  88 ERLSKMVIENELEDPAI 104
Cdd:COG5137   231 ERIDKKQGEEEEMEEEV 247
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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