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Conserved domains on  [gi|1907138186|ref|XP_036016779|]
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target of rapamycin complex 2 subunit MAPKAP1 isoform X3 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PH_Avo1 cd13331
Avo1 Pleckstrin homology (PH) domain; Target of rapamycin (TOR) is a highly conserved serine ...
324-431 4.13e-58

Avo1 Pleckstrin homology (PH) domain; Target of rapamycin (TOR) is a highly conserved serine/threonine protein kinase and a central controller of the growth, metabolism and ageing of eukaryotic cells. TOR assembles into two protein complexes termed TOR complex 1 (TORC1) and TOR complex 2 (TORC2) which function as central nodes in a complex network of signal transduction pathways that are involved in normal physiological as well as pathogenic events. TORC1 mediates the rapamycin-sensitive signalling branch, which positively regulates anabolic processes and negatively regulates catabolic processes. TORC2 signalling is rapamycinin insensitive and is involved in the spatial aspects of cell growth by controlling the actin cytoskeleton and cell polarity. In Saccharomyces cerevisiae, TORC2 is involved in the regulation of ceramide metabolism. In S. cerevisiae, TORC1 consists of the proteins Kog1, Lst8, Tco89 and either Tor1 or Tor2, while TORC2 consists of the proteins Avo1, Avo2, Avo3, Bit61, Lst8 and Tor2. The C-terminal domain of the Saccharomyces cerevisiae TORC2 component Avo1 is required for plasma-membrane localization of TORC2 and is essential for yeast viability. The C-termini of Avo1 and Sin1, its Human ortholog, both have the pleckstrin homology (PH) domain fold. Comparison with known PH-domain structures suggests a putative binding site for phosphoinositides. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


:

Pssm-ID: 270139  Cd Length: 108  Bit Score: 186.84  E-value: 4.13e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907138186 324 YKSFKVSMIHRLRFTTDVQLGISGDKVEIDPVTNQKASTKFWIKQKPISIDCDLLCACDLAEEKSPSHAVFKLTYLSSHD 403
Cdd:cd13331     1 YKSFKVSMIHRLRFTTDVQLGISGDKVEIDPVTNQKHSTKFWIKQKPISIDSSLLCACDLSEEKSPSHAHFKITYLSNHD 80
                          90       100
                  ....*....|....*....|....*...
gi 1907138186 404 YKHLYFESDAATVSEIVLKVNYILESRA 431
Cdd:cd13331    81 YKHLYFESDAATVNEIVLKVNYILESRA 108
SIN1 pfam05422
Stress-activated map kinase interacting protein 1 (SIN1); SIN1 is the N-terminus of ...
18-129 2.19e-44

Stress-activated map kinase interacting protein 1 (SIN1); SIN1 is the N-terminus of stress-activated map kinase interacting protein 1 (MAPKAP1 OR SIN1) sequences. This domain is likely to be the Ras-binding domain. The fission yeast Sty1/Spc1 mitogen-activated protein (MAP) kinase is a member of the eukaryotic stress-activated MAP kinase (SAPK) family. Sin1 interacts with Sty1/Spc1. Cells lacking Sin1 display many, but not all, of the phenotypes of cells lacking the Sty1/Spc1 MAP kinase including sterility, multiple stress sensitivity and a cell-cycle delay. Sin1 is phosphorylated after stress but this is not Sty1/Spc1-dependent. The separate CRIM and PH, pleckstrin-homology domains of the full-length SIN1 proteins have been separated into distinct families.


:

Pssm-ID: 461648  Cd Length: 136  Bit Score: 151.84  E-value: 2.19e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907138186  18 HVTSDDTGMCEMVLIDHDV-------------DLEKTHPPSVPGDSGSEVQGSSGETQGYIY-----------AQSVDIT 73
Cdd:pfam05422   1 FITSDDTGLCETVMLDDDVskhylrkandtvsDLRKPSDKKQVGGSGGDFRHSNADFSDYPGldlsdseddglDQSYDIQ 80
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1907138186  74 SSWDFGIRRRSNTAQRLERLRKERQNQIKCKNIQWKERNSKQSAQELKSLFEKKSL 129
Cdd:pfam05422  81 SYWDFGIHRRSNTAQKLERLDKAKQKAAKIKNIKWEDRSSELSAEDLSELFEKKEV 136
CRIM super family cl25239
SAPK-interacting protein 1 (Sin1), middle CRIM domain; CRIM is a domain in the middle of Sin1 ...
140-224 3.35e-24

SAPK-interacting protein 1 (Sin1), middle CRIM domain; CRIM is a domain in the middle of Sin1 that is important in the substrate recognition of TORC2. It is conserved from yeast to humans. TOR is a serine/threonine-specific protein kinase and forms functionally distinct protein complexes referred to as TORC1 and TORC2.


The actual alignment was detected with superfamily member pfam16978:

Pssm-ID: 465326  Cd Length: 137  Bit Score: 97.57  E-value: 3.35e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907138186 140 SILSVRLEQCPLQLNNPFNEYSKFDGKGHVGTTAtkKIDVYLPlhSSQDRLLPMTVVTMASARVQDLIGLICWQYTSEGR 219
Cdd:pfam16978   2 SLLSALLKAKKKSPSNPLEYYAFLSGKGEPSNPL--KIKIYFP--FSTSPSKPFEVKVRKDATVAEVIGLILWRYSEEKR 77

                  ....*
gi 1907138186 220 EPKLK 224
Cdd:pfam16978  78 EPPLD 82
 
Name Accession Description Interval E-value
PH_Avo1 cd13331
Avo1 Pleckstrin homology (PH) domain; Target of rapamycin (TOR) is a highly conserved serine ...
324-431 4.13e-58

Avo1 Pleckstrin homology (PH) domain; Target of rapamycin (TOR) is a highly conserved serine/threonine protein kinase and a central controller of the growth, metabolism and ageing of eukaryotic cells. TOR assembles into two protein complexes termed TOR complex 1 (TORC1) and TOR complex 2 (TORC2) which function as central nodes in a complex network of signal transduction pathways that are involved in normal physiological as well as pathogenic events. TORC1 mediates the rapamycin-sensitive signalling branch, which positively regulates anabolic processes and negatively regulates catabolic processes. TORC2 signalling is rapamycinin insensitive and is involved in the spatial aspects of cell growth by controlling the actin cytoskeleton and cell polarity. In Saccharomyces cerevisiae, TORC2 is involved in the regulation of ceramide metabolism. In S. cerevisiae, TORC1 consists of the proteins Kog1, Lst8, Tco89 and either Tor1 or Tor2, while TORC2 consists of the proteins Avo1, Avo2, Avo3, Bit61, Lst8 and Tor2. The C-terminal domain of the Saccharomyces cerevisiae TORC2 component Avo1 is required for plasma-membrane localization of TORC2 and is essential for yeast viability. The C-termini of Avo1 and Sin1, its Human ortholog, both have the pleckstrin homology (PH) domain fold. Comparison with known PH-domain structures suggests a putative binding site for phosphoinositides. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


Pssm-ID: 270139  Cd Length: 108  Bit Score: 186.84  E-value: 4.13e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907138186 324 YKSFKVSMIHRLRFTTDVQLGISGDKVEIDPVTNQKASTKFWIKQKPISIDCDLLCACDLAEEKSPSHAVFKLTYLSSHD 403
Cdd:cd13331     1 YKSFKVSMIHRLRFTTDVQLGISGDKVEIDPVTNQKHSTKFWIKQKPISIDSSLLCACDLSEEKSPSHAHFKITYLSNHD 80
                          90       100
                  ....*....|....*....|....*...
gi 1907138186 404 YKHLYFESDAATVSEIVLKVNYILESRA 431
Cdd:cd13331    81 YKHLYFESDAATVNEIVLKVNYILESRA 108
SIN1 pfam05422
Stress-activated map kinase interacting protein 1 (SIN1); SIN1 is the N-terminus of ...
18-129 2.19e-44

Stress-activated map kinase interacting protein 1 (SIN1); SIN1 is the N-terminus of stress-activated map kinase interacting protein 1 (MAPKAP1 OR SIN1) sequences. This domain is likely to be the Ras-binding domain. The fission yeast Sty1/Spc1 mitogen-activated protein (MAP) kinase is a member of the eukaryotic stress-activated MAP kinase (SAPK) family. Sin1 interacts with Sty1/Spc1. Cells lacking Sin1 display many, but not all, of the phenotypes of cells lacking the Sty1/Spc1 MAP kinase including sterility, multiple stress sensitivity and a cell-cycle delay. Sin1 is phosphorylated after stress but this is not Sty1/Spc1-dependent. The separate CRIM and PH, pleckstrin-homology domains of the full-length SIN1 proteins have been separated into distinct families.


Pssm-ID: 461648  Cd Length: 136  Bit Score: 151.84  E-value: 2.19e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907138186  18 HVTSDDTGMCEMVLIDHDV-------------DLEKTHPPSVPGDSGSEVQGSSGETQGYIY-----------AQSVDIT 73
Cdd:pfam05422   1 FITSDDTGLCETVMLDDDVskhylrkandtvsDLRKPSDKKQVGGSGGDFRHSNADFSDYPGldlsdseddglDQSYDIQ 80
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1907138186  74 SSWDFGIRRRSNTAQRLERLRKERQNQIKCKNIQWKERNSKQSAQELKSLFEKKSL 129
Cdd:pfam05422  81 SYWDFGIHRRSNTAQKLERLDKAKQKAAKIKNIKWEDRSSELSAEDLSELFEKKEV 136
CRIM pfam16978
SAPK-interacting protein 1 (Sin1), middle CRIM domain; CRIM is a domain in the middle of Sin1 ...
140-224 3.35e-24

SAPK-interacting protein 1 (Sin1), middle CRIM domain; CRIM is a domain in the middle of Sin1 that is important in the substrate recognition of TORC2. It is conserved from yeast to humans. TOR is a serine/threonine-specific protein kinase and forms functionally distinct protein complexes referred to as TORC1 and TORC2.


Pssm-ID: 465326  Cd Length: 137  Bit Score: 97.57  E-value: 3.35e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907138186 140 SILSVRLEQCPLQLNNPFNEYSKFDGKGHVGTTAtkKIDVYLPlhSSQDRLLPMTVVTMASARVQDLIGLICWQYTSEGR 219
Cdd:pfam16978   2 SLLSALLKAKKKSPSNPLEYYAFLSGKGEPSNPL--KIKIYFP--FSTSPSKPFEVKVRKDATVAEVIGLILWRYSEEKR 77

                  ....*
gi 1907138186 220 EPKLK 224
Cdd:pfam16978  78 EPPLD 82
SIN1_PH pfam16979
SAPK-interacting protein 1 (Sin1), Pleckstrin-homology; SIN1_PH is a pleckstrin-homology ...
324-428 1.34e-21

SAPK-interacting protein 1 (Sin1), Pleckstrin-homology; SIN1_PH is a pleckstrin-homology domain found at the C-terminus of SIN1. It is conserved from yeast to humans. PH-domains are involved in intracellular signalling or as constituents of the cytoskeleton. SIN1 (SAPK-interacting protein 1) plays an essential role in signal transduction, anf the PH domain is involved in lipid and membrane binding.


Pssm-ID: 465327  Cd Length: 104  Bit Score: 89.19  E-value: 1.34e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907138186 324 YKSFKVSMIHRLRFT-TDVQLGISGDKVEIDPVTNqkasTKFWIK-QKPISIDCDLLCACDLAEEKSpshAVFKLTYLSS 401
Cdd:pfam16979   2 YKKYTVWRKQKMSRAkHERTLAIDGDYIHIMPSEN----KKFWSEsGKTTSYHISSVVGCKQSERKP---SNFKIVVYRD 74
                          90       100
                  ....*....|....*....|....*....
gi 1907138186 402 HD-YKHLYFESD-AATVSEIVLKVNYILE 428
Cdd:pfam16979  75 SReFKRYDFEADsPKEAAEIVQKIKKILE 103
 
Name Accession Description Interval E-value
PH_Avo1 cd13331
Avo1 Pleckstrin homology (PH) domain; Target of rapamycin (TOR) is a highly conserved serine ...
324-431 4.13e-58

Avo1 Pleckstrin homology (PH) domain; Target of rapamycin (TOR) is a highly conserved serine/threonine protein kinase and a central controller of the growth, metabolism and ageing of eukaryotic cells. TOR assembles into two protein complexes termed TOR complex 1 (TORC1) and TOR complex 2 (TORC2) which function as central nodes in a complex network of signal transduction pathways that are involved in normal physiological as well as pathogenic events. TORC1 mediates the rapamycin-sensitive signalling branch, which positively regulates anabolic processes and negatively regulates catabolic processes. TORC2 signalling is rapamycinin insensitive and is involved in the spatial aspects of cell growth by controlling the actin cytoskeleton and cell polarity. In Saccharomyces cerevisiae, TORC2 is involved in the regulation of ceramide metabolism. In S. cerevisiae, TORC1 consists of the proteins Kog1, Lst8, Tco89 and either Tor1 or Tor2, while TORC2 consists of the proteins Avo1, Avo2, Avo3, Bit61, Lst8 and Tor2. The C-terminal domain of the Saccharomyces cerevisiae TORC2 component Avo1 is required for plasma-membrane localization of TORC2 and is essential for yeast viability. The C-termini of Avo1 and Sin1, its Human ortholog, both have the pleckstrin homology (PH) domain fold. Comparison with known PH-domain structures suggests a putative binding site for phosphoinositides. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


Pssm-ID: 270139  Cd Length: 108  Bit Score: 186.84  E-value: 4.13e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907138186 324 YKSFKVSMIHRLRFTTDVQLGISGDKVEIDPVTNQKASTKFWIKQKPISIDCDLLCACDLAEEKSPSHAVFKLTYLSSHD 403
Cdd:cd13331     1 YKSFKVSMIHRLRFTTDVQLGISGDKVEIDPVTNQKHSTKFWIKQKPISIDSSLLCACDLSEEKSPSHAHFKITYLSNHD 80
                          90       100
                  ....*....|....*....|....*...
gi 1907138186 404 YKHLYFESDAATVSEIVLKVNYILESRA 431
Cdd:cd13331    81 YKHLYFESDAATVNEIVLKVNYILESRA 108
SIN1 pfam05422
Stress-activated map kinase interacting protein 1 (SIN1); SIN1 is the N-terminus of ...
18-129 2.19e-44

Stress-activated map kinase interacting protein 1 (SIN1); SIN1 is the N-terminus of stress-activated map kinase interacting protein 1 (MAPKAP1 OR SIN1) sequences. This domain is likely to be the Ras-binding domain. The fission yeast Sty1/Spc1 mitogen-activated protein (MAP) kinase is a member of the eukaryotic stress-activated MAP kinase (SAPK) family. Sin1 interacts with Sty1/Spc1. Cells lacking Sin1 display many, but not all, of the phenotypes of cells lacking the Sty1/Spc1 MAP kinase including sterility, multiple stress sensitivity and a cell-cycle delay. Sin1 is phosphorylated after stress but this is not Sty1/Spc1-dependent. The separate CRIM and PH, pleckstrin-homology domains of the full-length SIN1 proteins have been separated into distinct families.


Pssm-ID: 461648  Cd Length: 136  Bit Score: 151.84  E-value: 2.19e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907138186  18 HVTSDDTGMCEMVLIDHDV-------------DLEKTHPPSVPGDSGSEVQGSSGETQGYIY-----------AQSVDIT 73
Cdd:pfam05422   1 FITSDDTGLCETVMLDDDVskhylrkandtvsDLRKPSDKKQVGGSGGDFRHSNADFSDYPGldlsdseddglDQSYDIQ 80
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1907138186  74 SSWDFGIRRRSNTAQRLERLRKERQNQIKCKNIQWKERNSKQSAQELKSLFEKKSL 129
Cdd:pfam05422  81 SYWDFGIHRRSNTAQKLERLDKAKQKAAKIKNIKWEDRSSELSAEDLSELFEKKEV 136
CRIM pfam16978
SAPK-interacting protein 1 (Sin1), middle CRIM domain; CRIM is a domain in the middle of Sin1 ...
140-224 3.35e-24

SAPK-interacting protein 1 (Sin1), middle CRIM domain; CRIM is a domain in the middle of Sin1 that is important in the substrate recognition of TORC2. It is conserved from yeast to humans. TOR is a serine/threonine-specific protein kinase and forms functionally distinct protein complexes referred to as TORC1 and TORC2.


Pssm-ID: 465326  Cd Length: 137  Bit Score: 97.57  E-value: 3.35e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907138186 140 SILSVRLEQCPLQLNNPFNEYSKFDGKGHVGTTAtkKIDVYLPlhSSQDRLLPMTVVTMASARVQDLIGLICWQYTSEGR 219
Cdd:pfam16978   2 SLLSALLKAKKKSPSNPLEYYAFLSGKGEPSNPL--KIKIYFP--FSTSPSKPFEVKVRKDATVAEVIGLILWRYSEEKR 77

                  ....*
gi 1907138186 220 EPKLK 224
Cdd:pfam16978  78 EPPLD 82
SIN1_PH pfam16979
SAPK-interacting protein 1 (Sin1), Pleckstrin-homology; SIN1_PH is a pleckstrin-homology ...
324-428 1.34e-21

SAPK-interacting protein 1 (Sin1), Pleckstrin-homology; SIN1_PH is a pleckstrin-homology domain found at the C-terminus of SIN1. It is conserved from yeast to humans. PH-domains are involved in intracellular signalling or as constituents of the cytoskeleton. SIN1 (SAPK-interacting protein 1) plays an essential role in signal transduction, anf the PH domain is involved in lipid and membrane binding.


Pssm-ID: 465327  Cd Length: 104  Bit Score: 89.19  E-value: 1.34e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907138186 324 YKSFKVSMIHRLRFT-TDVQLGISGDKVEIDPVTNqkasTKFWIK-QKPISIDCDLLCACDLAEEKSpshAVFKLTYLSS 401
Cdd:pfam16979   2 YKKYTVWRKQKMSRAkHERTLAIDGDYIHIMPSEN----KKFWSEsGKTTSYHISSVVGCKQSERKP---SNFKIVVYRD 74
                          90       100
                  ....*....|....*....|....*....
gi 1907138186 402 HD-YKHLYFESD-AATVSEIVLKVNYILE 428
Cdd:pfam16979  75 SReFKRYDFEADsPKEAAEIVQKIKKILE 103
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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