|
Name |
Accession |
Description |
Interval |
E-value |
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
55-299 |
1.34e-31 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 122.33 E-value: 1.34e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907101803 55 AVFSIAVSSDGREVLGGANDGCLYVFDREQNRRTLQIESHEDDVNAVAFADiSSQILFSGGDDAICKVWDRRTmreddPK 134
Cdd:COG2319 164 AVTSVAFSPDGKLLASGSDDGTVRLWDLATGKLLRTLTGHTGAVRSVAFSP-DGKLLASGSADGTVRLWDLAT-----GK 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907101803 135 PVGALAGHQDGITFIDSKGDARYLISNSKDQTIKLWDIrrfssrEGMEASRLAATQQNWdyrwqqVPKIAW--------- 205
Cdd:COG2319 238 LLRTLTGHSGSVRSVAFSPDGRLLASGSADGTVRLWDL------ATGELLRTLTGHSGG------VNSVAFspdgkllas 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907101803 206 ----KKLKL---PGDSSLMTYRGHGVLHTLIRcrFSPahsTGQQfIYSGCSTGKVVVYDLLSGHIVKKLTNHKACVRDVS 278
Cdd:COG2319 306 gsddGTVRLwdlATGKLLRTLTGHTGAVRSVA--FSP---DGKT-LASGSDDGTVRLWDLATGELLRTLTGHTGAVTSVA 379
|
250 260
....*....|....*....|.
gi 1907101803 279 WHPFEEKIVSSSWDGNLRLWQ 299
Cdd:COG2319 380 FSPDGRTLASGSADGTVRLWD 400
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
55-299 |
3.52e-31 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 118.98 E-value: 3.52e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907101803 55 AVFSIAVSSDGREVLGGANDGCLYVFDREQNRRTLQIESHEDDVNAVAFADiSSQILFSGGDDAICKVWDRRTmreddPK 134
Cdd:cd00200 53 PVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVET-----GK 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907101803 135 PVGALAGHQDGITFIDSKGDARYLISNSKDQTIKLWDIRRFSSR---EGMEasrlaatqqnwdyrwQQVPKIAW------ 205
Cdd:cd00200 127 CLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVatlTGHT---------------GEVNSVAFspdgek 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907101803 206 ----------KKLKLPGDSSLMTYRGHgvLHTLIRCRFSPahstGQQFIYSGCSTGKVVVYDLLSGHIVKKLTNHKACVR 275
Cdd:cd00200 192 llssssdgtiKLWDLSTGKCLGTLRGH--ENGVNSVAFSP----DGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVT 265
|
250 260
....*....|....*....|....
gi 1907101803 276 DVSWHPFEEKIVSSSWDGNLRLWQ 299
Cdd:cd00200 266 SLAWSPDGKRLASGSADGTIRIWD 289
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
260-298 |
3.97e-07 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 45.77 E-value: 3.97e-07
10 20 30
....*....|....*....|....*....|....*....
gi 1907101803 260 SGHIVKKLTNHKACVRDVSWHPFEEKIVSSSWDGNLRLW 298
Cdd:smart00320 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
261-298 |
5.54e-06 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 42.72 E-value: 5.54e-06
10 20 30
....*....|....*....|....*....|....*...
gi 1907101803 261 GHIVKKLTNHKACVRDVSWHPFEEKIVSSSWDGNLRLW 298
Cdd:pfam00400 1 GKLLKTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVW 38
|
|
| PTZ00420 |
PTZ00420 |
coronin; Provisional |
67-172 |
7.91e-05 |
|
coronin; Provisional
Pssm-ID: 240412 [Multi-domain] Cd Length: 568 Bit Score: 44.17 E-value: 7.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907101803 67 EVLGGANDGCLYVFDREQNRRTLQIESHEDDVNAVAFADISSQILFSGGDDAICKVWDRRTMRED-----DPKPVgaLAG 141
Cdd:PTZ00420 46 EVEGGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESvkeikDPQCI--LKG 123
|
90 100 110
....*....|....*....|....*....|..
gi 1907101803 142 HQDGITFIDSKGDARYLISNSK-DQTIKLWDI 172
Cdd:PTZ00420 124 HKKKISIIDWNPMNYYIMCSSGfDSFVNIWDI 155
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
55-299 |
1.34e-31 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 122.33 E-value: 1.34e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907101803 55 AVFSIAVSSDGREVLGGANDGCLYVFDREQNRRTLQIESHEDDVNAVAFADiSSQILFSGGDDAICKVWDRRTmreddPK 134
Cdd:COG2319 164 AVTSVAFSPDGKLLASGSDDGTVRLWDLATGKLLRTLTGHTGAVRSVAFSP-DGKLLASGSADGTVRLWDLAT-----GK 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907101803 135 PVGALAGHQDGITFIDSKGDARYLISNSKDQTIKLWDIrrfssrEGMEASRLAATQQNWdyrwqqVPKIAW--------- 205
Cdd:COG2319 238 LLRTLTGHSGSVRSVAFSPDGRLLASGSADGTVRLWDL------ATGELLRTLTGHSGG------VNSVAFspdgkllas 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907101803 206 ----KKLKL---PGDSSLMTYRGHGVLHTLIRcrFSPahsTGQQfIYSGCSTGKVVVYDLLSGHIVKKLTNHKACVRDVS 278
Cdd:COG2319 306 gsddGTVRLwdlATGKLLRTLTGHTGAVRSVA--FSP---DGKT-LASGSDDGTVRLWDLATGELLRTLTGHTGAVTSVA 379
|
250 260
....*....|....*....|.
gi 1907101803 279 WHPFEEKIVSSSWDGNLRLWQ 299
Cdd:COG2319 380 FSPDGRTLASGSADGTVRLWD 400
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
55-299 |
3.52e-31 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 118.98 E-value: 3.52e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907101803 55 AVFSIAVSSDGREVLGGANDGCLYVFDREQNRRTLQIESHEDDVNAVAFADiSSQILFSGGDDAICKVWDRRTmreddPK 134
Cdd:cd00200 53 PVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVET-----GK 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907101803 135 PVGALAGHQDGITFIDSKGDARYLISNSKDQTIKLWDIRRFSSR---EGMEasrlaatqqnwdyrwQQVPKIAW------ 205
Cdd:cd00200 127 CLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVatlTGHT---------------GEVNSVAFspdgek 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907101803 206 ----------KKLKLPGDSSLMTYRGHgvLHTLIRCRFSPahstGQQFIYSGCSTGKVVVYDLLSGHIVKKLTNHKACVR 275
Cdd:cd00200 192 llssssdgtiKLWDLSTGKCLGTLRGH--ENGVNSVAFSP----DGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVT 265
|
250 260
....*....|....*....|....
gi 1907101803 276 DVSWHPFEEKIVSSSWDGNLRLWQ 299
Cdd:cd00200 266 SLAWSPDGKRLASGSADGTIRIWD 289
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
55-298 |
7.20e-30 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 117.70 E-value: 7.20e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907101803 55 AVFSIAVSSDGREVLGGANDGCLYVFDREQNRRTLQIESHEDDVNAVAFADiSSQILFSGGDDAICKVWDRRTmreddPK 134
Cdd:COG2319 122 AVRSVAFSPDGKTLASGSADGTVRLWDLATGKLLRTLTGHSGAVTSVAFSP-DGKLLASGSDDGTVRLWDLAT-----GK 195
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907101803 135 PVGALAGHQDGITFIDSKGDARYLISNSKDQTIKLWDIRRfssreGMEASRLAATQQnwdyrwqQVPKIAW--------- 205
Cdd:COG2319 196 LLRTLTGHTGAVRSVAFSPDGKLLASGSADGTVRLWDLAT-----GKLLRTLTGHSG-------SVRSVAFspdgrllas 263
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907101803 206 ----KKLKL---PGDSSLMTYRGHGvlHTLIRCRFSPahsTGQQFIySGCSTGKVVVYDLLSGHIVKKLTNHKACVRDVS 278
Cdd:COG2319 264 gsadGTVRLwdlATGELLRTLTGHS--GGVNSVAFSP---DGKLLA-SGSDDGTVRLWDLATGKLLRTLTGHTGAVRSVA 337
|
250 260
....*....|....*....|
gi 1907101803 279 WHPFEEKIVSSSWDGNLRLW 298
Cdd:COG2319 338 FSPDGKTLASGSDDGTVRLW 357
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
56-301 |
7.68e-30 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 115.12 E-value: 7.68e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907101803 56 VFSIAVSSDGREVLGGANDGCLYVFDREQNRRTLQIESHEDDVNAVAFADISSQiLFSGGDDAICKVWDRRTmreddPKP 135
Cdd:cd00200 12 VTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTY-LASGSSDKTIRLWDLET-----GEC 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907101803 136 VGALAGHQDGITFIDSKGDARYLISNSKDQTIKLWDIRRFSSregmeasrlaatqqnwdyrwqqvpkiawkklklpgdss 215
Cdd:cd00200 86 VRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKC-------------------------------------- 127
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907101803 216 LMTYRGH--GVLHtlirCRFSPahstGQQFIYSGCSTGKVVVYDLLSGHIVKKLTNHKACVRDVSWHPFEEKIVSSSWDG 293
Cdd:cd00200 128 LTTLRGHtdWVNS----VAFSP----DGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDG 199
|
....*...
gi 1907101803 294 NLRLWQYR 301
Cdd:cd00200 200 TIKLWDLS 207
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
43-298 |
1.69e-27 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 111.16 E-value: 1.69e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907101803 43 RALPILPDERRFAVFSIAVSSDGREVLGGANDGCLYVFDREQNRRTLQIESHEDDVNAVAFADiSSQILFSGGDDAICKV 122
Cdd:COG2319 68 GALLATLLGHTAAVLSVAFSPDGRLLASASADGTVRLWDLATGLLLRTLTGHTGAVRSVAFSP-DGKTLASGSADGTVRL 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907101803 123 WDRRTmreddPKPVGALAGHQDGITFIDSKGDARYLISNSKDQTIKLWD------IRRFSSREGMEAS--------RLAA 188
Cdd:COG2319 147 WDLAT-----GKLLRTLTGHSGAVTSVAFSPDGKLLASGSDDGTVRLWDlatgklLRTLTGHTGAVRSvafspdgkLLAS 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907101803 189 TQQN-----WDyrwqqvpkiawkklkLPGDSSLMTYRGHGVLHTLIrcRFSPahstGQQFIYSGCSTGKVVVYDLLSGHI 263
Cdd:COG2319 222 GSADgtvrlWD---------------LATGKLLRTLTGHSGSVRSV--AFSP----DGRLLASGSADGTVRLWDLATGEL 280
|
250 260 270
....*....|....*....|....*....|....*
gi 1907101803 264 VKKLTNHKACVRDVSWHPFEEKIVSSSWDGNLRLW 298
Cdd:COG2319 281 LRTLTGHSGGVNSVAFSPDGKLLASGSDDGTVRLW 315
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
90-322 |
3.70e-21 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 91.63 E-value: 3.70e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907101803 90 QIESHEDDVNAVAFADiSSQILFSGGDDAICKVWDRRTMReddpkPVGALAGHQDGITFIDSKGDARYLISNSKDQTIKL 169
Cdd:cd00200 4 TLKGHTGGVTCVAFSP-DGKLLATGSGDGTIKVWDLETGE-----LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907101803 170 WDIRrfssregmeasrlaatqqnwdyrwqqvpkiawkklklpGDSSLMTYRGHgvLHTLIRCRFSPAHstgqQFIYSGCS 249
Cdd:cd00200 78 WDLE--------------------------------------TGECVRTLTGH--TSYVSSVAFSPDG----RILSSSSR 113
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907101803 250 TGKVVVYDLLSGHIVKKLTNHKACVRDVSWHPFEEKIVSSSWDGNLRLWQYRQAEYFQD-DMPESDMNRVCSSG 322
Cdd:cd00200 114 DKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATlTGHTGEVNSVAFSP 187
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
42-298 |
1.85e-19 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 88.43 E-value: 1.85e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907101803 42 LRALPILPDERRFAVFSIAVSSDGREVLGGANDGCLYVFDREQNRRTLQIESHEDDVNAVAFADISSQILFSGGDDAIcK 121
Cdd:COG2319 25 LGALLLLLLGLAAAVASLAASPDGARLAAGAGDLTLLLLDAAAGALLATLLGHTAAVLSVAFSPDGRLLASASADGTV-R 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907101803 122 VWDRRTmreddPKPVGALAGHQDGITFIDSKGDARYLISNSKDQTIKLWDIRRfssregmeasrlaatqqnwdyrwqqvp 201
Cdd:COG2319 104 LWDLAT-----GLLLRTLTGHTGAVRSVAFSPDGKTLASGSADGTVRLWDLAT--------------------------- 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907101803 202 kiaWKKLKlpgdsslmTYRGHGvlHTLIRCRFSPahsTGQqFIYSGCSTGKVVVYDLLSGHIVKKLTNHKACVRDVSWHP 281
Cdd:COG2319 152 ---GKLLR--------TLTGHS--GAVTSVAFSP---DGK-LLASGSDDGTVRLWDLATGKLLRTLTGHTGAVRSVAFSP 214
|
250
....*....|....*..
gi 1907101803 282 FEEKIVSSSWDGNLRLW 298
Cdd:COG2319 215 DGKLLASGSADGTVRLW 231
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
55-173 |
8.17e-19 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 86.50 E-value: 8.17e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907101803 55 AVFSIAVSSDGREVLGGANDGCLYVFDREQNRRTLQIESHEDDVNAVAFADiSSQILFSGGDDAICKVWDRRTmreddPK 134
Cdd:COG2319 290 GVNSVAFSPDGKLLASGSDDGTVRLWDLATGKLLRTLTGHTGAVRSVAFSP-DGKTLASGSDDGTVRLWDLAT-----GE 363
|
90 100 110
....*....|....*....|....*....|....*....
gi 1907101803 135 PVGALAGHQDGITFIDSKGDARYLISNSKDQTIKLWDIR 173
Cdd:COG2319 364 LLRTLTGHTGAVTSVAFSPDGRTLASGSADGTVRLWDLA 402
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
55-127 |
1.26e-09 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 58.77 E-value: 1.26e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907101803 55 AVFSIAVSSDGREVLGGANDGCLYVFDREQNRRTLQIESHEDDVNAVAFADiSSQILFSGGDDAICKVWDRRT 127
Cdd:COG2319 332 AVRSVAFSPDGKTLASGSDDGTVRLWDLATGELLRTLTGHTGAVTSVAFSP-DGRTLASGSADGTVRLWDLAT 403
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
260-298 |
3.97e-07 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 45.77 E-value: 3.97e-07
10 20 30
....*....|....*....|....*....|....*....
gi 1907101803 260 SGHIVKKLTNHKACVRDVSWHPFEEKIVSSSWDGNLRLW 298
Cdd:smart00320 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
153-298 |
1.86e-06 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 49.14 E-value: 1.86e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907101803 153 GDARYLISNSKDQTIKLWDIRRFSSREGMEASRLAATQQNWDYRWQQVPKIAWKKLKLPGDSSLMTYRGHGVLHTLIRCR 232
Cdd:COG2319 6 GAALAAASADLALALLAAALGALLLLLLGLAAAVASLAASPDGARLAAGAGDLTLLLLDAAAGALLATLLGHTAAVLSVA 85
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907101803 233 FSPAHstgqQFIYSGCSTGKVVVYDLLSGHIVKKLTNHKACVRDVSWHPFEEKIVSSSWDGNLRLW 298
Cdd:COG2319 86 FSPDG----RLLASASADGTVRLWDLATGLLLRTLTGHTGAVRSVAFSPDGKTLASGSADGTVRLW 147
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
261-298 |
5.54e-06 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 42.72 E-value: 5.54e-06
10 20 30
....*....|....*....|....*....|....*...
gi 1907101803 261 GHIVKKLTNHKACVRDVSWHPFEEKIVSSSWDGNLRLW 298
Cdd:pfam00400 1 GKLLKTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVW 38
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
134-171 |
3.76e-05 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 40.41 E-value: 3.76e-05
10 20 30
....*....|....*....|....*....|....*...
gi 1907101803 134 KPVGALAGHQDGITFIDSKGDARYLISNSKDQTIKLWD 171
Cdd:pfam00400 2 KLLKTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVWD 39
|
|
| PTZ00420 |
PTZ00420 |
coronin; Provisional |
67-172 |
7.91e-05 |
|
coronin; Provisional
Pssm-ID: 240412 [Multi-domain] Cd Length: 568 Bit Score: 44.17 E-value: 7.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907101803 67 EVLGGANDGCLYVFDREQNRRTLQIESHEDDVNAVAFADISSQILFSGGDDAICKVWDRRTMRED-----DPKPVgaLAG 141
Cdd:PTZ00420 46 EVEGGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESvkeikDPQCI--LKG 123
|
90 100 110
....*....|....*....|....*....|..
gi 1907101803 142 HQDGITFIDSKGDARYLISNSK-DQTIKLWDI 172
Cdd:PTZ00420 124 HKKKISIIDWNPMNYYIMCSSGfDSFVNIWDI 155
|
|
| PLN00181 |
PLN00181 |
protein SPA1-RELATED; Provisional |
46-172 |
1.18e-04 |
|
protein SPA1-RELATED; Provisional
Pssm-ID: 177776 [Multi-domain] Cd Length: 793 Bit Score: 43.92 E-value: 1.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907101803 46 PILPDERRFAVFSIAVSSDGREVLGGAN-DGCLYVFDREQNRRTLQIESHEDDVNAVAFADISSQILFSGGDDAICKVW- 123
Cdd:PLN00181 525 PVVELASRSKLSGICWNSYIKSQVASSNfEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWs 604
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907101803 124 ----------------------------------DRRTMRED--DPK-PVGALAGHQDGITFIDSKgDARYLISNSKDQT 166
Cdd:PLN00181 605 inqgvsigtiktkaniccvqfpsesgrslafgsaDHKVYYYDlrNPKlPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNT 683
|
....*.
gi 1907101803 167 IKLWDI 172
Cdd:PLN00181 684 LKLWDL 689
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
132-171 |
1.52e-04 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 38.45 E-value: 1.52e-04
10 20 30 40
....*....|....*....|....*....|....*....|
gi 1907101803 132 DPKPVGALAGHQDGITFIDSKGDARYLISNSKDQTIKLWD 171
Cdd:smart00320 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
91-124 |
7.00e-04 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 36.91 E-value: 7.00e-04
10 20 30
....*....|....*....|....*....|....
gi 1907101803 91 IESHEDDVNAVAFADiSSQILFSGGDDAICKVWD 124
Cdd:smart00320 8 LKGHTGPVTSVAFSP-DGKYLASGSDDGTIKLWD 40
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
91-124 |
1.10e-03 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 36.17 E-value: 1.10e-03
10 20 30
....*....|....*....|....*....|....
gi 1907101803 91 IESHEDDVNAVAFADiSSQILFSGGDDAICKVWD 124
Cdd:pfam00400 7 LEGHTGSVTSLAFSP-DGKLLASGSDDGTVKVWD 39
|
|
| PTZ00421 |
PTZ00421 |
coronin; Provisional |
89-191 |
3.56e-03 |
|
coronin; Provisional
Pssm-ID: 173611 [Multi-domain] Cd Length: 493 Bit Score: 39.11 E-value: 3.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907101803 89 LQIESHEDDVNAVAFADISSQILFSGGDDAICKVWDRRTmreddPKPVGALAGHQDGITFIDSKGDARYLISNSKDQTIK 168
Cdd:PTZ00421 119 VHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVER-----GKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLN 193
|
90 100
....*....|....*....|...
gi 1907101803 169 LWDIRRFSSREGMEASRLAATQQ 191
Cdd:PTZ00421 194 IIDPRDGTIVSSVEAHASAKSQR 216
|
|
|