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Conserved domains on  [gi|1907070871|ref|XP_036010481|]
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uncharacterized protein C2orf80 homolog isoform X7 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF5563 super family cl39249
Family of unknown function (DUF5563); This is a family of unknown function found in chordata.
 72-141 3.60e-35

Family of unknown function (DUF5563); This is a family of unknown function found in chordata.


The actual alignment was detected with superfamily member pfam17718:

Pssm-ID: 375286  Cd Length: 192  Bit Score: 120.39  E-value: 3.60e-35
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070871  72 VAQALLPRRSLHPFAMLTAPRAAECNRRQSVKLRRGATNKNTTSSSTKKATGQNGDPVGKGTHTPATKSL 141
Cdd:pfam17718 123 VPRAPSLHLSLHPFAMLTAPKAAEYARKQSVKLRRGATNKNATSSSTKKANATEWKPSKELSDTQPKSKV 192
 
Name Accession Description Interval E-value
DUF5563 pfam17718
Family of unknown function (DUF5563); This is a family of unknown function found in chordata.
 72-141 3.60e-35

Family of unknown function (DUF5563); This is a family of unknown function found in chordata.


Pssm-ID: 375286  Cd Length: 192  Bit Score: 120.39  E-value: 3.60e-35
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070871  72 VAQALLPRRSLHPFAMLTAPRAAECNRRQSVKLRRGATNKNTTSSSTKKATGQNGDPVGKGTHTPATKSL 141
Cdd:pfam17718 123 VPRAPSLHLSLHPFAMLTAPKAAEYARKQSVKLRRGATNKNATSSSTKKANATEWKPSKELSDTQPKSKV 192
 
Name Accession Description Interval E-value
DUF5563 pfam17718
Family of unknown function (DUF5563); This is a family of unknown function found in chordata.
 72-141 3.60e-35

Family of unknown function (DUF5563); This is a family of unknown function found in chordata.


Pssm-ID: 375286  Cd Length: 192  Bit Score: 120.39  E-value: 3.60e-35
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070871  72 VAQALLPRRSLHPFAMLTAPRAAECNRRQSVKLRRGATNKNTTSSSTKKATGQNGDPVGKGTHTPATKSL 141
Cdd:pfam17718 123 VPRAPSLHLSLHPFAMLTAPKAAEYARKQSVKLRRGATNKNATSSSTKKANATEWKPSKELSDTQPKSKV 192
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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