NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1907070869|ref|XP_036010477|]
View 

uncharacterized protein C2orf80 homolog isoform X6 [Mus musculus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
DUF5563 super family cl39249
Family of unknown function (DUF5563); This is a family of unknown function found in chordata.
4-124 4.73e-73

Family of unknown function (DUF5563); This is a family of unknown function found in chordata.


The actual alignment was detected with superfamily member pfam17718:

Pssm-ID: 375286  Cd Length: 192  Bit Score: 217.46  E-value: 4.73e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070869   4 RAPLHVRPAYPNRKEREAMILSSYAGVLMNSIPIEEVLKIYGANSSASPDSTKVAQALLPRRSLHPFAMLTAPRAAECNR 83
Cdd:pfam17718  70 KMPFHGRPVYPNRREREAMILSSYAGILMNSIPIEEVFKIYGADSSASSGTTKVPRAPSLHLSLHPFAMLTAPKAAEYAR 149
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1907070869  84 RQSVKLRRGATNKNTTSSSTKKATGQNGDPVGKGTHTPATN 124
Cdd:pfam17718 150 KQSVKLRRGATNKNATSSSTKKANATEWKPSKELSDTQPKS 190
 
Name Accession Description Interval E-value
DUF5563 pfam17718
Family of unknown function (DUF5563); This is a family of unknown function found in chordata.
4-124 4.73e-73

Family of unknown function (DUF5563); This is a family of unknown function found in chordata.


Pssm-ID: 375286  Cd Length: 192  Bit Score: 217.46  E-value: 4.73e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070869   4 RAPLHVRPAYPNRKEREAMILSSYAGVLMNSIPIEEVLKIYGANSSASPDSTKVAQALLPRRSLHPFAMLTAPRAAECNR 83
Cdd:pfam17718  70 KMPFHGRPVYPNRREREAMILSSYAGILMNSIPIEEVFKIYGADSSASSGTTKVPRAPSLHLSLHPFAMLTAPKAAEYAR 149
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1907070869  84 RQSVKLRRGATNKNTTSSSTKKATGQNGDPVGKGTHTPATN 124
Cdd:pfam17718 150 KQSVKLRRGATNKNATSSSTKKANATEWKPSKELSDTQPKS 190
 
Name Accession Description Interval E-value
DUF5563 pfam17718
Family of unknown function (DUF5563); This is a family of unknown function found in chordata.
4-124 4.73e-73

Family of unknown function (DUF5563); This is a family of unknown function found in chordata.


Pssm-ID: 375286  Cd Length: 192  Bit Score: 217.46  E-value: 4.73e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070869   4 RAPLHVRPAYPNRKEREAMILSSYAGVLMNSIPIEEVLKIYGANSSASPDSTKVAQALLPRRSLHPFAMLTAPRAAECNR 83
Cdd:pfam17718  70 KMPFHGRPVYPNRREREAMILSSYAGILMNSIPIEEVFKIYGADSSASSGTTKVPRAPSLHLSLHPFAMLTAPKAAEYAR 149
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1907070869  84 RQSVKLRRGATNKNTTSSSTKKATGQNGDPVGKGTHTPATN 124
Cdd:pfam17718 150 KQSVKLRRGATNKNATSSSTKKANATEWKPSKELSDTQPKS 190
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH