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Conserved domains on  [gi|1907191497|ref|XP_036010233|]
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MAU2 chromatid cohesion factor homolog isoform X1 [Mus musculus]

Protein Classification

Cohesin_load domain-containing protein( domain architecture ID 10563562)

Cohesin_load domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Cohesin_load pfam10345
Cohesin loading factor; Cohesin_load is a common cohesin loading factor protein that is ...
 31-592 2.70e-107

Cohesin loading factor; Cohesin_load is a common cohesin loading factor protein that is conserved in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes but dispensable in G2 when cohesion has been established. It is referred to as both Ssl3, in pombe, and Scc4, in S.cerevisiae. It complexes with Mis4.


:

Pssm-ID: 463053 [Multi-domain]  Cd Length: 585  Bit Score: 336.21  E-value: 2.70e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907191497  31 WYLALLGFAEHFRTSSPP----------------KIRLCVHCLQAVF-PFKPPQRIEARTHLQLGSVLYHHTKNSEQARS 93
Cdd:pfam10345   1 YVALLLSLAEEYLTAAHKmvalvrseedleqyykLIATGLGCLEAVLkNFSLPPRQEARIRLRLASLLLEETENLDEAEE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907191497  94 HLEKAWLISQQIPqFEDVKFEAASLLSELYCQeNSVDAAKPLLRKAIQI--SQQTPYWHCRLLFQLAQLHTLEKDLVSAC 171
Cdd:pfam10345  81 YLSKAITLCERNR-LSDLKYAMQHLLARILFK-TNPKAALKALDRLIEDaeAYRHVHWVYAFRFLRASLLLQENDYSAAL 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907191497 172 DLLGVGAEYARVVGSEYTRALFLLSKGMV---SGGRCAIEkaccgatctlvsllfpalfdlfelllmerklqEVHPLLTL 248
Cdd:pfam10345 159 ENLQSISELAEQRGDQAVRVVALLLEALLhlrSSPSDSLE--------------------------------EAQRALAA 206

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907191497 249 CGQivENWQGNPIQKESLRVFFLVLQVTHYLDAGQVKSVKPCLKQLQQCIQTI---STLHDD---EILPSNPADL----- 317
Cdd:pfam10345 207 ARS--EQLQPSMQAIPQLRALLLLLDLLCSLMQGNPKQITEKLKQLQSFIDNLkdwSNWSDDgsiLIPIGKSSDGkdklv 284

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907191497 318 FHWLPKEHMCVLVYLVTVMHSMQAGYLE-KAQKYTDKALMQLEKLKMLDCSPILS------------SFQVILLEHIIMC 384
Cdd:pfam10345 285 FSWLNKEDLYILGYLLSGVAYLPKNYDDnKAEKFLEEALKLLEKLLSSLRPPSLSlsdasskilwrrSLRCYLLIYQAFA 364

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907191497 385 RLVTGHKATALQEISQV-CQLCQQSPRLFSNHAAQLHTLLGLYCVSVNCMDNAEAQFTTAL---------RLTNHQELWA 454
Cdd:pfam10345 365 ACVRSDWTKANEFLNALhKLLKKSELQLPGSLTPLLHYLLGLYAQGTGDLEAALAIYVSPLlsllpspskTTALDIPREL 444

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907191497 455 FIVTNLASVYIREGNRHQE--VLYSLLERINP-DHSFPvsSHCLRAAAFYVRGLFSFFQGRYNEAKRFLRETLKMSNAED 531
Cdd:pfam10345 445 AILAALNLILILRDPRHPDhiELNWLLEQLEPfCLNHP--NKSLRAAYYLVKALQAFPQNSLLDAKKHLQEALQAAKKIG 522

                         570       580       590       600       610       620
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907191497 532 LNRLTACSLVLLGHIFYVLGNHRESNNMVVPAMQLASKIPDMSVQLWSSALLRDLNKACGN 592
Cdd:pfam10345 523 NTQLLAILLNLMGARFFENVVGEQALKSARAARTLAKKSGDGLWQLVADGLLADLYEVQGE 583
 
Name Accession Description Interval E-value
Cohesin_load pfam10345
Cohesin loading factor; Cohesin_load is a common cohesin loading factor protein that is ...
 31-592 2.70e-107

Cohesin loading factor; Cohesin_load is a common cohesin loading factor protein that is conserved in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes but dispensable in G2 when cohesion has been established. It is referred to as both Ssl3, in pombe, and Scc4, in S.cerevisiae. It complexes with Mis4.


Pssm-ID: 463053 [Multi-domain]  Cd Length: 585  Bit Score: 336.21  E-value: 2.70e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907191497  31 WYLALLGFAEHFRTSSPP----------------KIRLCVHCLQAVF-PFKPPQRIEARTHLQLGSVLYHHTKNSEQARS 93
Cdd:pfam10345   1 YVALLLSLAEEYLTAAHKmvalvrseedleqyykLIATGLGCLEAVLkNFSLPPRQEARIRLRLASLLLEETENLDEAEE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907191497  94 HLEKAWLISQQIPqFEDVKFEAASLLSELYCQeNSVDAAKPLLRKAIQI--SQQTPYWHCRLLFQLAQLHTLEKDLVSAC 171
Cdd:pfam10345  81 YLSKAITLCERNR-LSDLKYAMQHLLARILFK-TNPKAALKALDRLIEDaeAYRHVHWVYAFRFLRASLLLQENDYSAAL 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907191497 172 DLLGVGAEYARVVGSEYTRALFLLSKGMV---SGGRCAIEkaccgatctlvsllfpalfdlfelllmerklqEVHPLLTL 248
Cdd:pfam10345 159 ENLQSISELAEQRGDQAVRVVALLLEALLhlrSSPSDSLE--------------------------------EAQRALAA 206

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907191497 249 CGQivENWQGNPIQKESLRVFFLVLQVTHYLDAGQVKSVKPCLKQLQQCIQTI---STLHDD---EILPSNPADL----- 317
Cdd:pfam10345 207 ARS--EQLQPSMQAIPQLRALLLLLDLLCSLMQGNPKQITEKLKQLQSFIDNLkdwSNWSDDgsiLIPIGKSSDGkdklv 284

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907191497 318 FHWLPKEHMCVLVYLVTVMHSMQAGYLE-KAQKYTDKALMQLEKLKMLDCSPILS------------SFQVILLEHIIMC 384
Cdd:pfam10345 285 FSWLNKEDLYILGYLLSGVAYLPKNYDDnKAEKFLEEALKLLEKLLSSLRPPSLSlsdasskilwrrSLRCYLLIYQAFA 364

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907191497 385 RLVTGHKATALQEISQV-CQLCQQSPRLFSNHAAQLHTLLGLYCVSVNCMDNAEAQFTTAL---------RLTNHQELWA 454
Cdd:pfam10345 365 ACVRSDWTKANEFLNALhKLLKKSELQLPGSLTPLLHYLLGLYAQGTGDLEAALAIYVSPLlsllpspskTTALDIPREL 444

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907191497 455 FIVTNLASVYIREGNRHQE--VLYSLLERINP-DHSFPvsSHCLRAAAFYVRGLFSFFQGRYNEAKRFLRETLKMSNAED 531
Cdd:pfam10345 445 AILAALNLILILRDPRHPDhiELNWLLEQLEPfCLNHP--NKSLRAAYYLVKALQAFPQNSLLDAKKHLQEALQAAKKIG 522

                         570       580       590       600       610       620
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907191497 532 LNRLTACSLVLLGHIFYVLGNHRESNNMVVPAMQLASKIPDMSVQLWSSALLRDLNKACGN 592
Cdd:pfam10345 523 NTQLLAILLNLMGARFFENVVGEQALKSARAARTLAKKSGDGLWQLVADGLLADLYEVQGE 583
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
417-555 9.90e-05

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 44.23  E-value: 9.90e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907191497 417 AQLHTLLGLYCVSVNCMDNAEAQFTTALRLT-NHQELWAfivtNLASVYIREGnRHQEVLYSLLE--RINPDHsfpvssh 493
Cdd:COG0457    42 AEALYNLGLAYLRLGRYEEALADYEQALELDpDDAEALN----NLGLALQALG-RYEEALEDYDKalELDPDD------- 109

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907191497 494 clrAAAFYVRGLFSFFQGRYNEAKRFLRETLKmsnaedLNRLTACSLVLLGHIFYVLGNHRE 555
Cdd:COG0457   110 ---AEALYNLGLALLELGRYDEAIEAYERALE------LDPDDADALYNLGIALEKLGRYEE 162
 
Name Accession Description Interval E-value
Cohesin_load pfam10345
Cohesin loading factor; Cohesin_load is a common cohesin loading factor protein that is ...
 31-592 2.70e-107

Cohesin loading factor; Cohesin_load is a common cohesin loading factor protein that is conserved in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes but dispensable in G2 when cohesion has been established. It is referred to as both Ssl3, in pombe, and Scc4, in S.cerevisiae. It complexes with Mis4.


Pssm-ID: 463053 [Multi-domain]  Cd Length: 585  Bit Score: 336.21  E-value: 2.70e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907191497  31 WYLALLGFAEHFRTSSPP----------------KIRLCVHCLQAVF-PFKPPQRIEARTHLQLGSVLYHHTKNSEQARS 93
Cdd:pfam10345   1 YVALLLSLAEEYLTAAHKmvalvrseedleqyykLIATGLGCLEAVLkNFSLPPRQEARIRLRLASLLLEETENLDEAEE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907191497  94 HLEKAWLISQQIPqFEDVKFEAASLLSELYCQeNSVDAAKPLLRKAIQI--SQQTPYWHCRLLFQLAQLHTLEKDLVSAC 171
Cdd:pfam10345  81 YLSKAITLCERNR-LSDLKYAMQHLLARILFK-TNPKAALKALDRLIEDaeAYRHVHWVYAFRFLRASLLLQENDYSAAL 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907191497 172 DLLGVGAEYARVVGSEYTRALFLLSKGMV---SGGRCAIEkaccgatctlvsllfpalfdlfelllmerklqEVHPLLTL 248
Cdd:pfam10345 159 ENLQSISELAEQRGDQAVRVVALLLEALLhlrSSPSDSLE--------------------------------EAQRALAA 206

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907191497 249 CGQivENWQGNPIQKESLRVFFLVLQVTHYLDAGQVKSVKPCLKQLQQCIQTI---STLHDD---EILPSNPADL----- 317
Cdd:pfam10345 207 ARS--EQLQPSMQAIPQLRALLLLLDLLCSLMQGNPKQITEKLKQLQSFIDNLkdwSNWSDDgsiLIPIGKSSDGkdklv 284

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907191497 318 FHWLPKEHMCVLVYLVTVMHSMQAGYLE-KAQKYTDKALMQLEKLKMLDCSPILS------------SFQVILLEHIIMC 384
Cdd:pfam10345 285 FSWLNKEDLYILGYLLSGVAYLPKNYDDnKAEKFLEEALKLLEKLLSSLRPPSLSlsdasskilwrrSLRCYLLIYQAFA 364

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907191497 385 RLVTGHKATALQEISQV-CQLCQQSPRLFSNHAAQLHTLLGLYCVSVNCMDNAEAQFTTAL---------RLTNHQELWA 454
Cdd:pfam10345 365 ACVRSDWTKANEFLNALhKLLKKSELQLPGSLTPLLHYLLGLYAQGTGDLEAALAIYVSPLlsllpspskTTALDIPREL 444

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907191497 455 FIVTNLASVYIREGNRHQE--VLYSLLERINP-DHSFPvsSHCLRAAAFYVRGLFSFFQGRYNEAKRFLRETLKMSNAED 531
Cdd:pfam10345 445 AILAALNLILILRDPRHPDhiELNWLLEQLEPfCLNHP--NKSLRAAYYLVKALQAFPQNSLLDAKKHLQEALQAAKKIG 522

                         570       580       590       600       610       620
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907191497 532 LNRLTACSLVLLGHIFYVLGNHRESNNMVVPAMQLASKIPDMSVQLWSSALLRDLNKACGN 592
Cdd:pfam10345 523 NTQLLAILLNLMGARFFENVVGEQALKSARAARTLAKKSGDGLWQLVADGLLADLYEVQGE 583
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
417-555 9.90e-05

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 44.23  E-value: 9.90e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907191497 417 AQLHTLLGLYCVSVNCMDNAEAQFTTALRLT-NHQELWAfivtNLASVYIREGnRHQEVLYSLLE--RINPDHsfpvssh 493
Cdd:COG0457    42 AEALYNLGLAYLRLGRYEEALADYEQALELDpDDAEALN----NLGLALQALG-RYEEALEDYDKalELDPDD------- 109

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907191497 494 clrAAAFYVRGLFSFFQGRYNEAKRFLRETLKmsnaedLNRLTACSLVLLGHIFYVLGNHRE 555
Cdd:COG0457   110 ---AEALYNLGLALLELGRYDEAIEAYERALE------LDPDDADALYNLGIALEKLGRYEE 162
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 417-535 1.07e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 42.30  E-value: 1.07e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907191497 417 AQLHTLLGLYCVSVNCMDNAEAQFTTALRLT-NHQELWAfivtNLASVYIREGNRHQ-EVLYSLLERINPDHsfpvsshc 494
Cdd:COG4235    17 AEGWLLLGRAYLRLGRYDEALAAYEKALRLDpDNADALL----DLAEALLAAGDTEEaEELLERALALDPDN-------- 84

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1907191497 495 lrAAAFYVRGLFSFFQGRYNEAKRFLRETLKMSNAEDLNRL 535
Cdd:COG4235    85 --PEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARL 123
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
417-555 3.42e-04

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 42.69  E-value: 3.42e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907191497 417 AQLHTLLGLYCVSVNCMDNAEAQFTTALRLT-NHQELWAfivtNLASVYIREGnRHQEVLYSLLE--RINPDHsfpvssh 493
Cdd:COG0457     8 AEAYNNLGLAYRRLGRYEEAIEDYEKALELDpDDAEALY----NLGLAYLRLG-RYEEALADYEQalELDPDD------- 75

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907191497 494 clrAAAFYVRGLFSFFQGRYNEAKRFLRETLKmsnaedLNRLTACSLVLLGHIFYVLGNHRE 555
Cdd:COG0457    76 ---AEALNNLGLALQALGRYEEALEDYDKALE------LDPDDAEALYNLGLALLELGRYDE 128
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
434-527 1.78e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 38.23  E-value: 1.78e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907191497 434 DNAEAQFTTALRLtnhQELWAFIVTNLASVYIREGNRHQEVLYSLLERINPDHsfpvsshclrAAAFYVRGLFSFFQGRY 513
Cdd:COG3063     9 EEAEEYYEKALEL---DPDNADALNNLGLLLLEQGRYDEAIALEKALKLDPNN----------AEALLNLAELLLELGDY 75

                          90
                  ....*....|....
gi 1907191497 514 NEAKRFLRETLKMS 527
Cdd:COG3063    76 DEALAYLERALELD 89
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 66-195 2.34e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 40.48  E-value: 2.34e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907191497  66 PQRIEArtHLQLGSvLYHHTKNSEQARSHLEKAWlisqqipQFEDVKFEAASLLSELYCQENSVDAAKPLLRKAIQISQQ 145
Cdd:COG2956    73 PDRAEA--LLELAQ-DYLKAGLLDRAEELLEKLL-------ELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPE 142

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1907191497 146 TPYWHCrllfQLAQLHTLEKDLVSACDLLgvgaEYARVVGSEYTRALFLL 195
Cdd:COG2956   143 NAHAYC----ELAELYLEQGDYDEAIEAL----EKALKLDPDCARALLLL 184
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 66-170 3.91e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 39.71  E-value: 3.91e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907191497  66 PQRIEArtHLQLGSvLYHHTKNSEQARSHLEKawLISQQiPQFEDVKFEaaslLSELYCQENSVDAAKPLLRKAIQISQQ 145
Cdd:COG2956    39 PETVEA--HLALGN-LYRRRGEYDRAIRIHQK--LLERD-PDRAEALLE----LAQDYLKAGLLDRAEELLEKLLELDPD 108

                          90       100
                  ....*....|....*....|....*
gi 1907191497 146 TPywhcRLLFQLAQLHTLEKDLVSA 170
Cdd:COG2956   109 DA----EALRLLAEIYEQEGDWEKA 129
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 66-153 3.98e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 38.25  E-value: 3.98e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907191497  66 PQRIEArtHLQLGsVLYHHTKNSEQARSHLEKAWLISQQIPqfedvkfEAASLLSELYCQENSVDAAKPLLRKAIQISQQ 145
Cdd:COG4783    35 PDNPEA--FALLG-EILLQLGDLDEAIVLLHEALELDPDEP-------EARLNLGLALLKAGDYDEALALLEKALKLDPE 104


                  ....*...
gi 1907191497 146 TPYWHCRL 153
Cdd:COG4783   105 HPEAYLRL 112
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 389-526 9.47e-03

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 39.21  E-value: 9.47e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907191497 389 GHKATALQEISQVCQLCQQSPRLFSNHAAqLHTLLGLYCVSVNCMDNAEAQFTTALRL-TNHQELWAfivtNLASVYIRE 467
Cdd:COG3914    85 ALLLQALGRYEEALALYRRALALNPDNAE-ALFNLGNLLLALGRLEEALAALRRALALnPDFAEAYL----NLGEALRRL 159

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907191497 468 GnRHQEVLYSLLE--RINPDHsfpvsshclrAAAFYVRGLFSFFQGRYNEAKRFLRETLKM 526
Cdd:COG3914   160 G-RLEEAIAALRRalELDPDN----------AEALNNLGNALQDLGRLEEAIAAYRRALEL 209
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 71-174 9.94e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 38.56  E-value: 9.94e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907191497  71 ARTHLQLGSvLYHHTKNSEQARSHLEKAWlisQQIPQFedvkFEAASLLSELYCQENSVDAAKPLLRKAIQISQQTPywh 150
Cdd:COG2956   178 ARALLLLAE-LYLEQGDYEEAIAALERAL---EQDPDY----LPALPRLAELYEKLGDPEEALELLRKALELDPSDD--- 246

                          90       100
                  ....*....|....*....|....
gi 1907191497 151 crLLFQLAQLHTLEKDLVSACDLL 174
Cdd:COG2956   247 --LLLALADLLERKEGLEAALALL 268
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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