importin subunit beta-1 [Mirounga leonina]
importin beta family protein( domain architecture ID 707677)
importin beta family protein may function in nuclear protein import, either in association with an adapter protein, like an importin-alpha subunit, which binds to nuclear localization signals (NLS) in cargo substrates, or by acting as autonomous nuclear transport receptor
List of domain hits
Name | Accession | Description | Interval | E-value | ||||||||||||
KAP95 super family | cl27231 | Karyopherin (importin) beta [Intracellular trafficking and secretion]; |
2-871 | 0e+00 | ||||||||||||
Karyopherin (importin) beta [Intracellular trafficking and secretion]; The actual alignment was detected with superfamily member COG5215: Pssm-ID: 227540 [Multi-domain] Cd Length: 858 Bit Score: 618.49 E-value: 0e+00
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Name | Accession | Description | Interval | E-value | ||||||||||||
KAP95 | COG5215 | Karyopherin (importin) beta [Intracellular trafficking and secretion]; |
2-871 | 0e+00 | ||||||||||||
Karyopherin (importin) beta [Intracellular trafficking and secretion]; Pssm-ID: 227540 [Multi-domain] Cd Length: 858 Bit Score: 618.49 E-value: 0e+00
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HEAT_EZ | pfam13513 | HEAT-like repeat; The HEAT repeat family is related to armadillo/beta-catenin-like repeats ... |
380-435 | 1.11e-11 | ||||||||||||
HEAT-like repeat; The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Pssm-ID: 463906 [Multi-domain] Cd Length: 55 Bit Score: 60.46 E-value: 1.11e-11
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IBN_N | smart00913 | Importin-beta N-terminal domain; Members of the importin-beta (karyopherin-beta) family can ... |
21-101 | 8.38e-08 | ||||||||||||
Importin-beta N-terminal domain; Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins.. which is important for importin-beta mediated transport. Pssm-ID: 197981 [Multi-domain] Cd Length: 67 Bit Score: 49.93 E-value: 8.38e-08
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Name | Accession | Description | Interval | E-value | ||||||||||||
KAP95 | COG5215 | Karyopherin (importin) beta [Intracellular trafficking and secretion]; |
2-871 | 0e+00 | ||||||||||||
Karyopherin (importin) beta [Intracellular trafficking and secretion]; Pssm-ID: 227540 [Multi-domain] Cd Length: 858 Bit Score: 618.49 E-value: 0e+00
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HEAT_EZ | pfam13513 | HEAT-like repeat; The HEAT repeat family is related to armadillo/beta-catenin-like repeats ... |
380-435 | 1.11e-11 | ||||||||||||
HEAT-like repeat; The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Pssm-ID: 463906 [Multi-domain] Cd Length: 55 Bit Score: 60.46 E-value: 1.11e-11
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IBN_N | pfam03810 | Importin-beta N-terminal domain; |
21-101 | 3.45e-11 | ||||||||||||
Importin-beta N-terminal domain; Pssm-ID: 397745 [Multi-domain] Cd Length: 72 Bit Score: 59.56 E-value: 3.45e-11
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IBN_N | smart00913 | Importin-beta N-terminal domain; Members of the importin-beta (karyopherin-beta) family can ... |
21-101 | 8.38e-08 | ||||||||||||
Importin-beta N-terminal domain; Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins.. which is important for importin-beta mediated transport. Pssm-ID: 197981 [Multi-domain] Cd Length: 67 Bit Score: 49.93 E-value: 8.38e-08
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HEAT | pfam02985 | HEAT repeat; The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see ... |
410-439 | 1.07e-03 | ||||||||||||
HEAT repeat; The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). Pssm-ID: 460773 Cd Length: 31 Bit Score: 37.12 E-value: 1.07e-03
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HEAT | COG1413 | HEAT repeat [General function prediction only]; |
365-435 | 5.94e-03 | ||||||||||||
HEAT repeat [General function prediction only]; Pssm-ID: 441023 [Multi-domain] Cd Length: 137 Bit Score: 38.07 E-value: 5.94e-03
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Blast search parameters | ||||
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