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Conserved domains on  [gi|1832441411|ref|XP_033374782|]
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collagen alpha-1(XXVI) chain isoform X9 [Parus major]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
gly_rich_SclB super family cl45768
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 151-319 1.47e-09

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


The actual alignment was detected with superfamily member NF038329:

Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 59.53  E-value: 1.47e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832441411 151 EKGQPGERGPAGPPGMLGPQGPRGLPGETGIPGPPGPpgppatpslplTFQQGVLYSLQPTAEKENGEPQLASTVIDTIM 230
Cdd:NF038329  154 PQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGE-----------KGPQGPRGETGPAGEQGPAGPAGPDGEAGPAG 222

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832441411 231 AGLPGPRGAPGPAGPPGPPGASGPKGPPGPIGAPGSQGLPGSPGQPGPKGSKGDRGERGQAGLPGERGIKGFPGEPGKKG 310
Cdd:NF038329  223 EDGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDG 302


                  ....*....
gi 1832441411 311 EEGDKGADG 319
Cdd:NF038329  303 KDGQNGKDG 311
EMI pfam07546
EMI domain; The Pfam alignment is truncated at the C-terminus and does not include the final ...
 1-19 5.08e-05

EMI domain; The Pfam alignment is truncated at the C-terminus and does not include the final cysteine defined in Callebaut et al. This is to stop the family overlapping with other domains.


:

Pssm-ID: 462204  Cd Length: 69  Bit Score: 41.25  E-value: 5.08e-05
                          10
                  ....*....|....*....
gi 1832441411   1 MSYRTVTTLEWRCCPGFTG 19
Cdd:pfam07546  51 QVYKTVTRLEWRCCPGWGG 69
 
Name Accession Description Interval E-value
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 151-319 1.47e-09

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 59.53  E-value: 1.47e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832441411 151 EKGQPGERGPAGPPGMLGPQGPRGLPGETGIPGPPGPpgppatpslplTFQQGVLYSLQPTAEKENGEPQLASTVIDTIM 230
Cdd:NF038329  154 PQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGE-----------KGPQGPRGETGPAGEQGPAGPAGPDGEAGPAG 222

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832441411 231 AGLPGPRGAPGPAGPPGPPGASGPKGPPGPIGAPGSQGLPGSPGQPGPKGSKGDRGERGQAGLPGERGIKGFPGEPGKKG 310
Cdd:NF038329  223 EDGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDG 302


                  ....*....
gi 1832441411 311 EEGDKGADG 319
Cdd:NF038329  303 KDGQNGKDG 311
Collagen pfam01391
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ...
 266-320 6.01e-09

Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.


Pssm-ID: 460189 [Multi-domain]  Cd Length: 57  Bit Score: 51.73  E-value: 6.01e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1832441411 266 SQGLPGSPGQPGPKGSKGDRGERGQAGLPGERGIKGFPGEPGKKGEEGDKGADGE 320
Cdd:pfam01391   2 PPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGP 56
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 104-320 4.49e-07

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 51.83  E-value: 4.49e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832441411 104 RKTVGSGEAKGHRGAEEQLIPQGIPGQVGPPGPVGPTGLPGPPGPKGEKGQPGERGPAGPPGMLGPQGPRGlpgetgipg 183
Cdd:NF038329  146 AGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDG--------- 216

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832441411 184 ppgppgppatpslpLTFQQGVLYSLQPTAEKENGEPQLASTVidtimaglpgprgapgpagppgppGASGPKGPPGPIGA 263
Cdd:NF038329  217 --------------EAGPAGEDGPAGPAGDGQQGPDGDPGPT------------------------GEDGPQGPDGPAGK 258

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1832441411 264 PGSQGLPGSPGQPGPKGSKGDRGERGQAGLPGERGIKGFPGEPGKKGEEGDKGADGE 320
Cdd:NF038329  259 DGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGK 315
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 153-323 5.41e-07

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 51.44  E-value: 5.41e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832441411 153 GQPGERGPAGPPGMLGPQGPRGLPGEtgipgppgppgppatpslplTFQQGVLYSLQPTAEKENGEPQlastvidtimag 232
Cdd:NF038329  117 GEKGEPGPAGPAGPAGEQGPRGDRGE--------------------TGPAGPAGPPGPQGERGEKGPA------------ 164

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832441411 233 lpgprgapgpagppgppgasGPKGPPGPIGAPGSQGLPGSPGQPGPKGSKGDRGERGQAGLPGERGIKGFPGEPGKKGEE 312
Cdd:NF038329  165 --------------------GPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGED 224

                         170
                  ....*....|.
gi 1832441411 313 GDKGADGEGVQ 323
Cdd:NF038329  225 GPAGPAGDGQQ 235
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 244-324 1.94e-05

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 46.44  E-value: 1.94e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832441411 244 GPPGPPGASGPKGPPGPIGAPGSQGLPGSPGQPGPKGSKGDRGERGQAGLPGERGIKGFPGEPGKKGEEGDKGADGEGVQ 323
Cdd:NF038329  126 GPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGE 205


                  .
gi 1832441411 324 Q 324
Cdd:NF038329  206 Q 206
EMI pfam07546
EMI domain; The Pfam alignment is truncated at the C-terminus and does not include the final ...
 1-19 5.08e-05

EMI domain; The Pfam alignment is truncated at the C-terminus and does not include the final cysteine defined in Callebaut et al. This is to stop the family overlapping with other domains.


Pssm-ID: 462204  Cd Length: 69  Bit Score: 41.25  E-value: 5.08e-05
                          10
                  ....*....|....*....
gi 1832441411   1 MSYRTVTTLEWRCCPGFTG 19
Cdd:pfam07546  51 QVYKTVTRLEWRCCPGWGG 69
 
Name Accession Description Interval E-value
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 151-319 1.47e-09

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 59.53  E-value: 1.47e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832441411 151 EKGQPGERGPAGPPGMLGPQGPRGLPGETGIPGPPGPpgppatpslplTFQQGVLYSLQPTAEKENGEPQLASTVIDTIM 230
Cdd:NF038329  154 PQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGE-----------KGPQGPRGETGPAGEQGPAGPAGPDGEAGPAG 222

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832441411 231 AGLPGPRGAPGPAGPPGPPGASGPKGPPGPIGAPGSQGLPGSPGQPGPKGSKGDRGERGQAGLPGERGIKGFPGEPGKKG 310
Cdd:NF038329  223 EDGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDG 302


                  ....*....
gi 1832441411 311 EEGDKGADG 319
Cdd:NF038329  303 KDGQNGKDG 311
Collagen pfam01391
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ...
 266-320 6.01e-09

Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.


Pssm-ID: 460189 [Multi-domain]  Cd Length: 57  Bit Score: 51.73  E-value: 6.01e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1832441411 266 SQGLPGSPGQPGPKGSKGDRGERGQAGLPGERGIKGFPGEPGKKGEEGDKGADGE 320
Cdd:pfam01391   2 PPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGP 56
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 104-320 4.49e-07

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 51.83  E-value: 4.49e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832441411 104 RKTVGSGEAKGHRGAEEQLIPQGIPGQVGPPGPVGPTGLPGPPGPKGEKGQPGERGPAGPPGMLGPQGPRGlpgetgipg 183
Cdd:NF038329  146 AGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDG--------- 216

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832441411 184 ppgppgppatpslpLTFQQGVLYSLQPTAEKENGEPQLASTVidtimaglpgprgapgpagppgppGASGPKGPPGPIGA 263
Cdd:NF038329  217 --------------EAGPAGEDGPAGPAGDGQQGPDGDPGPT------------------------GEDGPQGPDGPAGK 258

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1832441411 264 PGSQGLPGSPGQPGPKGSKGDRGERGQAGLPGERGIKGFPGEPGKKGEEGDKGADGE 320
Cdd:NF038329  259 DGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGK 315
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 153-323 5.41e-07

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 51.44  E-value: 5.41e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832441411 153 GQPGERGPAGPPGMLGPQGPRGLPGEtgipgppgppgppatpslplTFQQGVLYSLQPTAEKENGEPQlastvidtimag 232
Cdd:NF038329  117 GEKGEPGPAGPAGPAGEQGPRGDRGE--------------------TGPAGPAGPPGPQGERGEKGPA------------ 164

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832441411 233 lpgprgapgpagppgppgasGPKGPPGPIGAPGSQGLPGSPGQPGPKGSKGDRGERGQAGLPGERGIKGFPGEPGKKGEE 312
Cdd:NF038329  165 --------------------GPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGED 224

                         170
                  ....*....|.
gi 1832441411 313 GDKGADGEGVQ 323
Cdd:NF038329  225 GPAGPAGDGQQ 235
Collagen pfam01391
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ...
 267-306 1.47e-05

Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.


Pssm-ID: 460189 [Multi-domain]  Cd Length: 57  Bit Score: 42.10  E-value: 1.47e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1832441411 267 QGLPGSPGQPGPKGSKGDRGERGQAGLPGERGIKGFPGEP 306
Cdd:pfam01391  18 PGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGPP 57
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 244-324 1.94e-05

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 46.44  E-value: 1.94e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832441411 244 GPPGPPGASGPKGPPGPIGAPGSQGLPGSPGQPGPKGSKGDRGERGQAGLPGERGIKGFPGEPGKKGEEGDKGADGEGVQ 323
Cdd:NF038329  126 GPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGE 205


                  .
gi 1832441411 324 Q 324
Cdd:NF038329  206 Q 206
EMI pfam07546
EMI domain; The Pfam alignment is truncated at the C-terminus and does not include the final ...
 1-19 5.08e-05

EMI domain; The Pfam alignment is truncated at the C-terminus and does not include the final cysteine defined in Callebaut et al. This is to stop the family overlapping with other domains.


Pssm-ID: 462204  Cd Length: 69  Bit Score: 41.25  E-value: 5.08e-05
                          10
                  ....*....|....*....
gi 1832441411   1 MSYRTVTTLEWRCCPGFTG 19
Cdd:pfam07546  51 QVYKTVTRLEWRCCPGWGG 69
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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