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Conserved domains on  [gi|1832441406|ref|XP_033374780|]
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collagen alpha-1(XXVI) chain isoform X8 [Parus major]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
EMI pfam07546
EMI domain; The Pfam alignment is truncated at the C-terminus and does not include the final ...
 9-79 5.94e-22

EMI domain; The Pfam alignment is truncated at the C-terminus and does not include the final cysteine defined in Callebaut et al. This is to stop the family overlapping with other domains.


:

Pssm-ID: 462204  Cd Length: 69  Bit Score: 89.02  E-value: 5.94e-22
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1832441406   9 GHWCHYtvtRTVSCQVQNGSETVIQRVYQ----SCRWPGPCAnlvSYRTLIRPTYKMSYRTVTTLEWRCCPGFTG 79
Cdd:pfam07546   1 RNVCAY---KVVSCVVVTGTESYVQPVYKpyltWCAGHRRCS---TYRTTYRPAYRQVYKTVTRLEWRCCPGWGG 69
Collagen pfam01391
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ...
 326-380 1.79e-10

Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.


:

Pssm-ID: 460189 [Multi-domain]  Cd Length: 57  Bit Score: 56.35  E-value: 1.79e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1832441406 326 SQGLPGSPGQPGPKGSKGDRGERGQAGLPGERGIKGFPGEPGKKGEEGDKGADGE 380
Cdd:pfam01391   2 PPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGP 56
gly_rich_SclB super family cl45768
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 211-379 3.65e-10

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


The actual alignment was detected with superfamily member NF038329:

Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 61.84  E-value: 3.65e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832441406 211 EKGQPGERGPAGPPGMLGPQGPRGLPGETGIPGPPGPpgppatpslplTFQQGVLYSLQPTAEKENGEPQLASTVIDTIM 290
Cdd:NF038329  154 PQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGE-----------KGPQGPRGETGPAGEQGPAGPAGPDGEAGPAG 222

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832441406 291 AGLPGPRGAPGPAGPPGPPGASGPKGPPGPIGAPGSQGLPGSPGQPGPKGSKGDRGERGQAGLPGERGIKGFPGEPGKKG 370
Cdd:NF038329  223 EDGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDG 302


                  ....*....
gi 1832441406 371 EEGDKGADG 379
Cdd:NF038329  303 KDGQNGKDG 311
 
Name Accession Description Interval E-value
EMI pfam07546
EMI domain; The Pfam alignment is truncated at the C-terminus and does not include the final ...
 9-79 5.94e-22

EMI domain; The Pfam alignment is truncated at the C-terminus and does not include the final cysteine defined in Callebaut et al. This is to stop the family overlapping with other domains.


Pssm-ID: 462204  Cd Length: 69  Bit Score: 89.02  E-value: 5.94e-22
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1832441406   9 GHWCHYtvtRTVSCQVQNGSETVIQRVYQ----SCRWPGPCAnlvSYRTLIRPTYKMSYRTVTTLEWRCCPGFTG 79
Cdd:pfam07546   1 RNVCAY---KVVSCVVVTGTESYVQPVYKpyltWCAGHRRCS---TYRTTYRPAYRQVYKTVTRLEWRCCPGWGG 69
Collagen pfam01391
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ...
 326-380 1.79e-10

Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.


Pssm-ID: 460189 [Multi-domain]  Cd Length: 57  Bit Score: 56.35  E-value: 1.79e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1832441406 326 SQGLPGSPGQPGPKGSKGDRGERGQAGLPGERGIKGFPGEPGKKGEEGDKGADGE 380
Cdd:pfam01391   2 PPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGP 56
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 211-379 3.65e-10

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 61.84  E-value: 3.65e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832441406 211 EKGQPGERGPAGPPGMLGPQGPRGLPGETGIPGPPGPpgppatpslplTFQQGVLYSLQPTAEKENGEPQLASTVIDTIM 290
Cdd:NF038329  154 PQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGE-----------KGPQGPRGETGPAGEQGPAGPAGPDGEAGPAG 222

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832441406 291 AGLPGPRGAPGPAGPPGPPGASGPKGPPGPIGAPGSQGLPGSPGQPGPKGSKGDRGERGQAGLPGERGIKGFPGEPGKKG 370
Cdd:NF038329  223 EDGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDG 302


                  ....*....
gi 1832441406 371 EEGDKGADG 379
Cdd:NF038329  303 KDGQNGKDG 311
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 213-383 3.70e-08

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 55.68  E-value: 3.70e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832441406 213 GQPGERGPAGPPGMLGPQGPRGLPGEtgipgppgppgppatpslplTFQQGVLYSLQPTAEKENGEPQlastvidtimag 292
Cdd:NF038329  117 GEKGEPGPAGPAGPAGEQGPRGDRGE--------------------TGPAGPAGPPGPQGERGEKGPA------------ 164

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832441406 293 lpgprgapgpagppgppgasGPKGPPGPIGAPGSQGLPGSPGQPGPKGSKGDRGERGQAGLPGERGIKGFPGEPGKKGEE 372
Cdd:NF038329  165 --------------------GPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGED 224

                         170
                  ....*....|.
gi 1832441406 373 GDKGADGEGVQ 383
Cdd:NF038329  225 GPAGPAGDGQQ 235
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 210-380 5.40e-08

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 54.91  E-value: 5.40e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832441406 210 GEKGQPGERGPAGPPGMLGPQGPRGlpgetgipgppgppgppatpslpLTFQQGVLYSLQPTAEKENGEPQLASTVidti 289
Cdd:NF038329  192 GPQGPRGETGPAGEQGPAGPAGPDG-----------------------EAGPAGEDGPAGPAGDGQQGPDGDPGPT---- 244

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832441406 290 maglpgprgapgpagppgppGASGPKGPPGPIGAPGSQGLPGSPGQPGPKGSKGDRGERGQAGLPGERGIKGFPGEPGKK 369
Cdd:NF038329  245 --------------------GEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKD 304

                         170
                  ....*....|.
gi 1832441406 370 GEEGDKGADGE 380
Cdd:NF038329  305 GQNGKDGLPGK 315
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 304-384 6.47e-06

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 48.36  E-value: 6.47e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832441406 304 GPPGPPGASGPKGPPGPIGAPGSQGLPGSPGQPGPKGSKGDRGERGQAGLPGERGIKGFPGEPGKKGEEGDKGADGEGVQ 383
Cdd:NF038329  126 GPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGE 205


                  .
gi 1832441406 384 Q 384
Cdd:NF038329  206 Q 206
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 211-380 8.31e-05

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 44.90  E-value: 8.31e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832441406 211 EKGQPGERGPAGPPGMLGPQGPRGLPGETGIPGPPGPPGPPATPSLPLTFQQGVLYSLQPTAEK-------------ENG 277
Cdd:NF038329  184 AKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTGEDgpqgpdgpagkdgPRG 263

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832441406 278 EPQLASTVIDTIMAGLPGPRgapgpagppgppgasgpkgppgpigapgsqGLPGSPGQPGPKGSKGDRGERGQAGLPGER 357
Cdd:NF038329  264 DRGEAGPDGPDGKDGERGPV------------------------------GPAGKDGQNGKDGLPGKDGKDGQNGKDGLP 313

                         170       180
                  ....*....|....*....|...
gi 1832441406 358 GIKGFPGEPGKKGEEGDKGADGE 380
Cdd:NF038329  314 GKDGKDGQPGKDGLPGKDGKDGQ 336
 
Name Accession Description Interval E-value
EMI pfam07546
EMI domain; The Pfam alignment is truncated at the C-terminus and does not include the final ...
 9-79 5.94e-22

EMI domain; The Pfam alignment is truncated at the C-terminus and does not include the final cysteine defined in Callebaut et al. This is to stop the family overlapping with other domains.


Pssm-ID: 462204  Cd Length: 69  Bit Score: 89.02  E-value: 5.94e-22
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1832441406   9 GHWCHYtvtRTVSCQVQNGSETVIQRVYQ----SCRWPGPCAnlvSYRTLIRPTYKMSYRTVTTLEWRCCPGFTG 79
Cdd:pfam07546   1 RNVCAY---KVVSCVVVTGTESYVQPVYKpyltWCAGHRRCS---TYRTTYRPAYRQVYKTVTRLEWRCCPGWGG 69
Collagen pfam01391
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ...
 326-380 1.79e-10

Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.


Pssm-ID: 460189 [Multi-domain]  Cd Length: 57  Bit Score: 56.35  E-value: 1.79e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1832441406 326 SQGLPGSPGQPGPKGSKGDRGERGQAGLPGERGIKGFPGEPGKKGEEGDKGADGE 380
Cdd:pfam01391   2 PPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGP 56
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 211-379 3.65e-10

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 61.84  E-value: 3.65e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832441406 211 EKGQPGERGPAGPPGMLGPQGPRGLPGETGIPGPPGPpgppatpslplTFQQGVLYSLQPTAEKENGEPQLASTVIDTIM 290
Cdd:NF038329  154 PQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGE-----------KGPQGPRGETGPAGEQGPAGPAGPDGEAGPAG 222

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832441406 291 AGLPGPRGAPGPAGPPGPPGASGPKGPPGPIGAPGSQGLPGSPGQPGPKGSKGDRGERGQAGLPGERGIKGFPGEPGKKG 370
Cdd:NF038329  223 EDGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDG 302


                  ....*....
gi 1832441406 371 EEGDKGADG 379
Cdd:NF038329  303 KDGQNGKDG 311
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 213-383 3.70e-08

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 55.68  E-value: 3.70e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832441406 213 GQPGERGPAGPPGMLGPQGPRGLPGEtgipgppgppgppatpslplTFQQGVLYSLQPTAEKENGEPQlastvidtimag 292
Cdd:NF038329  117 GEKGEPGPAGPAGPAGEQGPRGDRGE--------------------TGPAGPAGPPGPQGERGEKGPA------------ 164

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832441406 293 lpgprgapgpagppgppgasGPKGPPGPIGAPGSQGLPGSPGQPGPKGSKGDRGERGQAGLPGERGIKGFPGEPGKKGEE 372
Cdd:NF038329  165 --------------------GPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGED 224

                         170
                  ....*....|.
gi 1832441406 373 GDKGADGEGVQ 383
Cdd:NF038329  225 GPAGPAGDGQQ 235
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 210-380 5.40e-08

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 54.91  E-value: 5.40e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832441406 210 GEKGQPGERGPAGPPGMLGPQGPRGlpgetgipgppgppgppatpslpLTFQQGVLYSLQPTAEKENGEPQLASTVidti 289
Cdd:NF038329  192 GPQGPRGETGPAGEQGPAGPAGPDG-----------------------EAGPAGEDGPAGPAGDGQQGPDGDPGPT---- 244

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832441406 290 maglpgprgapgpagppgppGASGPKGPPGPIGAPGSQGLPGSPGQPGPKGSKGDRGERGQAGLPGERGIKGFPGEPGKK 369
Cdd:NF038329  245 --------------------GEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKD 304

                         170
                  ....*....|.
gi 1832441406 370 GEEGDKGADGE 380
Cdd:NF038329  305 GQNGKDGLPGK 315
Collagen pfam01391
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ...
 327-366 8.99e-07

Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.


Pssm-ID: 460189 [Multi-domain]  Cd Length: 57  Bit Score: 45.95  E-value: 8.99e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1832441406 327 QGLPGSPGQPGPKGSKGDRGERGQAGLPGERGIKGFPGEP 366
Cdd:pfam01391  18 PGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGPP 57
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 304-384 6.47e-06

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 48.36  E-value: 6.47e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832441406 304 GPPGPPGASGPKGPPGPIGAPGSQGLPGSPGQPGPKGSKGDRGERGQAGLPGERGIKGFPGEPGKKGEEGDKGADGEGVQ 383
Cdd:NF038329  126 GPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGE 205


                  .
gi 1832441406 384 Q 384
Cdd:NF038329  206 Q 206
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 211-380 8.31e-05

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 44.90  E-value: 8.31e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832441406 211 EKGQPGERGPAGPPGMLGPQGPRGLPGETGIPGPPGPPGPPATPSLPLTFQQGVLYSLQPTAEK-------------ENG 277
Cdd:NF038329  184 AKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTGEDgpqgpdgpagkdgPRG 263

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832441406 278 EPQLASTVIDTIMAGLPGPRgapgpagppgppgasgpkgppgpigapgsqGLPGSPGQPGPKGSKGDRGERGQAGLPGER 357
Cdd:NF038329  264 DRGEAGPDGPDGKDGERGPV------------------------------GPAGKDGQNGKDGLPGKDGKDGQNGKDGLP 313

                         170       180
                  ....*....|....*....|...
gi 1832441406 358 GIKGFPGEPGKKGEEGDKGADGE 380
Cdd:NF038329  314 GKDGKDGQPGKDGLPGKDGKDGQ 336
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
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