NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1728919729|ref|XP_030327701|]
View 

caspase-2 isoform X4 [Strigops habroptila]

Protein Classification

caspase( domain architecture ID 10170012)

caspase is a cysteine-dependent aspartate-directed protease that mediates programmed cell death; belongs to the peptidase C14 family

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
CASc cd00032
Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent ...
151-354 5.90e-69

Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.


:

Pssm-ID: 237997  Cd Length: 243  Bit Score: 216.31  E-value: 5.90e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728919729 151 YHDHRHLEMQNALERFSKmPGHRDVDSCIVALLSHGVEGGVYGSDGKLLQLQEAFRLFDNANCPNLQNKPKMFFIQACRG 230
Cdd:cd00032    51 KNNLTAEEILEELKEFAS-PDHSDSDSFVCVILSHGEEGGIYGTDGDVVPIDEITSLFNGDNCPSLAGKPKLFFIQACRG 129
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728919729 231 DETDRGVDQRDgkewsDSPGCEESDANKEENLKLRLPTCSDMICGYACLKGTAAMRNTKRGSWYVEALTSVFAEDSRDTH 310
Cdd:cd00032   130 DELDLGVEVDS-----GADEPPDVETEAEDDAVQTIPVEADFLVAYSTVPGYVSWRNTKKGSWFIQSLCQVLRKYAHSLD 204
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 1728919729 311 VADMLVKVNRHIKQREGYapgteFHRCKEMSEYCSTLCRDLYLF 354
Cdd:cd00032   205 LLDILTKVNRKVAEKFES-----VNGKKQMPCFRSTLTKKLYFF 243
CARD_CASP2 cd08332
Caspase activation and recruitment domain of Caspase-2; Caspase activation and recruitment ...
1-87 3.24e-45

Caspase activation and recruitment domain of Caspase-2; Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.


:

Pssm-ID: 260040  Cd Length: 87  Bit Score: 149.88  E-value: 3.24e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728919729   1 MQRCHQEALKKNRVMLAKQLLLKELMEHMIEKDIFTTEMVEMIQAKSGSFSQNVEFLNLLPKRGPNAFSAFCEALRETKQ 80
Cdd:cd08332     1 MQKRHREALKKNRVKLAKELVLDELLIHLLQKDILTDSMVESIMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQ 80

                  ....*..
gi 1728919729  81 QHLEAVI 87
Cdd:cd08332    81 EHLADLL 87
 
Name Accession Description Interval E-value
CASc cd00032
Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent ...
151-354 5.90e-69

Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.


Pssm-ID: 237997  Cd Length: 243  Bit Score: 216.31  E-value: 5.90e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728919729 151 YHDHRHLEMQNALERFSKmPGHRDVDSCIVALLSHGVEGGVYGSDGKLLQLQEAFRLFDNANCPNLQNKPKMFFIQACRG 230
Cdd:cd00032    51 KNNLTAEEILEELKEFAS-PDHSDSDSFVCVILSHGEEGGIYGTDGDVVPIDEITSLFNGDNCPSLAGKPKLFFIQACRG 129
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728919729 231 DETDRGVDQRDgkewsDSPGCEESDANKEENLKLRLPTCSDMICGYACLKGTAAMRNTKRGSWYVEALTSVFAEDSRDTH 310
Cdd:cd00032   130 DELDLGVEVDS-----GADEPPDVETEAEDDAVQTIPVEADFLVAYSTVPGYVSWRNTKKGSWFIQSLCQVLRKYAHSLD 204
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 1728919729 311 VADMLVKVNRHIKQREGYapgteFHRCKEMSEYCSTLCRDLYLF 354
Cdd:cd00032   205 LLDILTKVNRKVAEKFES-----VNGKKQMPCFRSTLTKKLYFF 243
CASc smart00115
Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine aspartases that ...
152-355 6.69e-69

Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.


Pssm-ID: 214521  Cd Length: 241  Bit Score: 216.34  E-value: 6.69e-69
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728919729  152 HDHRHL---EMQNALERFSKMPGHRDVDSCIVALLSHGVEGGVYGSDGKLLQLQEAFRLFDNANCPNLQNKPKMFFIQAC 228
Cdd:smart00115  47 QVKNNLtaeEMLEELKEFAAMPEHSDSDSFVCVLLSHGEEGGIYGTDGDPLPLDEIFSLFNGDNCPSLAGKPKLFFIQAC 126
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728919729  229 RGDETDRGVDQRDGKEWSDSPGceESDANKeenlklRLPTCSDMICGYACLKGTAAMRNTKRGSWYVEALTSVFAEDSRD 308
Cdd:smart00115 127 RGDELDGGVPVEDSVADPESEG--EDDAIY------KIPVEADFLAAYSTTPGYVSWRNPTRGSWFIQSLCQVLKEYARS 198
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*..
gi 1728919729  309 THVADMLVKVNRHIKQREGYApgteFHRCKEMSEYCSTLCRDLYLFP 355
Cdd:smart00115 199 LDLLDILTEVNRKVADKFESV----NAKKQMPTIESMTLTKKLYFFP 241
CARD_CASP2 cd08332
Caspase activation and recruitment domain of Caspase-2; Caspase activation and recruitment ...
1-87 3.24e-45

Caspase activation and recruitment domain of Caspase-2; Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.


Pssm-ID: 260040  Cd Length: 87  Bit Score: 149.88  E-value: 3.24e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728919729   1 MQRCHQEALKKNRVMLAKQLLLKELMEHMIEKDIFTTEMVEMIQAKSGSFSQNVEFLNLLPKRGPNAFSAFCEALRETKQ 80
Cdd:cd08332     1 MQKRHREALKKNRVKLAKELVLDELLIHLLQKDILTDSMVESIMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQ 80

                  ....*..
gi 1728919729  81 QHLEAVI 87
Cdd:cd08332    81 EHLADLL 87
Peptidase_C14 pfam00656
Caspase domain;
158-352 1.63e-41

Caspase domain;


Pssm-ID: 425803  Cd Length: 213  Bit Score: 144.39  E-value: 1.63e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728919729 158 EMQNALERFSKMPGHRDVDSCIVALL---SHGVE---GGVYGSDGKLLQLQEAFRLFDNANC-PNLQNKPKMFFIQACRG 230
Cdd:pfam00656  50 EIRRALRDFAARADHSDGDSFVVVLLyysGHGEQvpgGDIYGTDEYLVPVDALTNLFTGDDClPSLVGKPKLFIIDACRG 129
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728919729 231 DETDRGVdqrdgkewsdspgceesdankeenlklrlpTCSDMICGYACLKGTAAMRNTKRGSWYVEALTSVFAEDSRDTH 310
Cdd:pfam00656 130 NLEDGGV------------------------------VEADFLVAYSTAPGQVSWRNTGSGSWFIQALCQVLREYGHGLD 179
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1728919729 311 VADMLVKVNRHIKQRegyapgtefHRCKEMSE-YCSTLCRDLY 352
Cdd:pfam00656 180 LLSLLTKVRRRVAEA---------TGKKQMPClSSSTLTKKFY 213
CARD smart00114
Caspase recruitment domain; Motif contained in proteins involved in apoptotic signalling. ...
1-84 5.35e-19

Caspase recruitment domain; Motif contained in proteins involved in apoptotic signalling. Mediates homodimerisation. Structure consists of six antiparallel helices arranged in a topology homologue to the DEATH and the DED domain.


Pssm-ID: 128424  Cd Length: 88  Bit Score: 80.46  E-value: 5.35e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728919729    1 MQRCHQEALKKNRVMLAKQLLLKELMEHMIEKDIFTTEMVEMIQAKSGSFSQNVEFLNLLPKRGPNAFSAFCEALRETkQ 80
Cdd:smart00114   1 MAERDKRLLRRNRVRLGEELGVDGLLDYLVEKNVLTEKEIEAIKAATTKLRDKRELVDSLQKRGSQAFDTFLDSLQET-D 79

                   ....
gi 1728919729   81 QHLE 84
Cdd:smart00114  80 QKLA 83
CARD pfam00619
Caspase recruitment domain; Motif contained in proteins involved in apoptotic signaling. ...
6-83 2.04e-18

Caspase recruitment domain; Motif contained in proteins involved in apoptotic signaling. Predicted to possess a DEATH (pfam00531) domain-like fold.


Pssm-ID: 459874 [Multi-domain]  Cd Length: 85  Bit Score: 78.76  E-value: 2.04e-18
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1728919729   6 QEALKKNRVMLAKQLL-LKELMEHMIEKDIFTTEMVEMIQAKSGSFSQNVEFLNLLPKRGPNAFSAFCEALRETkQQHL 83
Cdd:pfam00619   1 RKLLKKNRVALVERLGtLDGLLDYLLEKNVLTEEEEEKIKANPTRLDKARELLDLVLKKGPKACQIFLEALKEG-DPDL 78
 
Name Accession Description Interval E-value
CASc cd00032
Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent ...
151-354 5.90e-69

Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.


Pssm-ID: 237997  Cd Length: 243  Bit Score: 216.31  E-value: 5.90e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728919729 151 YHDHRHLEMQNALERFSKmPGHRDVDSCIVALLSHGVEGGVYGSDGKLLQLQEAFRLFDNANCPNLQNKPKMFFIQACRG 230
Cdd:cd00032    51 KNNLTAEEILEELKEFAS-PDHSDSDSFVCVILSHGEEGGIYGTDGDVVPIDEITSLFNGDNCPSLAGKPKLFFIQACRG 129
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728919729 231 DETDRGVDQRDgkewsDSPGCEESDANKEENLKLRLPTCSDMICGYACLKGTAAMRNTKRGSWYVEALTSVFAEDSRDTH 310
Cdd:cd00032   130 DELDLGVEVDS-----GADEPPDVETEAEDDAVQTIPVEADFLVAYSTVPGYVSWRNTKKGSWFIQSLCQVLRKYAHSLD 204
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 1728919729 311 VADMLVKVNRHIKQREGYapgteFHRCKEMSEYCSTLCRDLYLF 354
Cdd:cd00032   205 LLDILTKVNRKVAEKFES-----VNGKKQMPCFRSTLTKKLYFF 243
CASc smart00115
Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine aspartases that ...
152-355 6.69e-69

Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.


Pssm-ID: 214521  Cd Length: 241  Bit Score: 216.34  E-value: 6.69e-69
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728919729  152 HDHRHL---EMQNALERFSKMPGHRDVDSCIVALLSHGVEGGVYGSDGKLLQLQEAFRLFDNANCPNLQNKPKMFFIQAC 228
Cdd:smart00115  47 QVKNNLtaeEMLEELKEFAAMPEHSDSDSFVCVLLSHGEEGGIYGTDGDPLPLDEIFSLFNGDNCPSLAGKPKLFFIQAC 126
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728919729  229 RGDETDRGVDQRDGKEWSDSPGceESDANKeenlklRLPTCSDMICGYACLKGTAAMRNTKRGSWYVEALTSVFAEDSRD 308
Cdd:smart00115 127 RGDELDGGVPVEDSVADPESEG--EDDAIY------KIPVEADFLAAYSTTPGYVSWRNPTRGSWFIQSLCQVLKEYARS 198
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*..
gi 1728919729  309 THVADMLVKVNRHIKQREGYApgteFHRCKEMSEYCSTLCRDLYLFP 355
Cdd:smart00115 199 LDLLDILTEVNRKVADKFESV----NAKKQMPTIESMTLTKKLYFFP 241
CARD_CASP2 cd08332
Caspase activation and recruitment domain of Caspase-2; Caspase activation and recruitment ...
1-87 3.24e-45

Caspase activation and recruitment domain of Caspase-2; Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.


Pssm-ID: 260040  Cd Length: 87  Bit Score: 149.88  E-value: 3.24e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728919729   1 MQRCHQEALKKNRVMLAKQLLLKELMEHMIEKDIFTTEMVEMIQAKSGSFSQNVEFLNLLPKRGPNAFSAFCEALRETKQ 80
Cdd:cd08332     1 MQKRHREALKKNRVKLAKELVLDELLIHLLQKDILTDSMVESIMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQ 80

                  ....*..
gi 1728919729  81 QHLEAVI 87
Cdd:cd08332    81 EHLADLL 87
Peptidase_C14 pfam00656
Caspase domain;
158-352 1.63e-41

Caspase domain;


Pssm-ID: 425803  Cd Length: 213  Bit Score: 144.39  E-value: 1.63e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728919729 158 EMQNALERFSKMPGHRDVDSCIVALL---SHGVE---GGVYGSDGKLLQLQEAFRLFDNANC-PNLQNKPKMFFIQACRG 230
Cdd:pfam00656  50 EIRRALRDFAARADHSDGDSFVVVLLyysGHGEQvpgGDIYGTDEYLVPVDALTNLFTGDDClPSLVGKPKLFIIDACRG 129
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728919729 231 DETDRGVdqrdgkewsdspgceesdankeenlklrlpTCSDMICGYACLKGTAAMRNTKRGSWYVEALTSVFAEDSRDTH 310
Cdd:pfam00656 130 NLEDGGV------------------------------VEADFLVAYSTAPGQVSWRNTGSGSWFIQALCQVLREYGHGLD 179
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1728919729 311 VADMLVKVNRHIKQRegyapgtefHRCKEMSE-YCSTLCRDLY 352
Cdd:pfam00656 180 LLSLLTKVRRRVAEA---------TGKKQMPClSSSTLTKKFY 213
CARD cd01671
Caspase activation and recruitment domain: a protein-protein interaction domain; Caspase ...
9-83 7.75e-25

Caspase activation and recruitment domain: a protein-protein interaction domain; Caspase activation and recruitment domains (CARDs) are death domains (DDs) found associated with caspases. Caspases are aspartate-specific cysteine proteases with functions in apoptosis, immune signaling, inflammation, and host-defense mechanisms. In addition to caspases, proteins containing CARDs include adaptor proteins such as RAIDD, CARD9, and RIG-I-like helicases, which can form multiprotein complexes and play important roles in mediating the signals to induce immune and inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.


Pssm-ID: 260018 [Multi-domain]  Cd Length: 79  Bit Score: 96.05  E-value: 7.75e-25
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1728919729   9 LKKNRVMLAKQLLLKELMEHMIEKDIFTTEMVEMIQAKSGSFSQNVEFLNLLPKRGPNAFSAFCEALRETKQQHL 83
Cdd:cd01671     1 LRKNRVELVEDLDVEDILDHLIQKGVLTEEDKEEILSEKTRQDKARKLLDILPRRGPKAFEVFCEALRETGQPHL 75
CARD smart00114
Caspase recruitment domain; Motif contained in proteins involved in apoptotic signalling. ...
1-84 5.35e-19

Caspase recruitment domain; Motif contained in proteins involved in apoptotic signalling. Mediates homodimerisation. Structure consists of six antiparallel helices arranged in a topology homologue to the DEATH and the DED domain.


Pssm-ID: 128424  Cd Length: 88  Bit Score: 80.46  E-value: 5.35e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728919729    1 MQRCHQEALKKNRVMLAKQLLLKELMEHMIEKDIFTTEMVEMIQAKSGSFSQNVEFLNLLPKRGPNAFSAFCEALRETkQ 80
Cdd:smart00114   1 MAERDKRLLRRNRVRLGEELGVDGLLDYLVEKNVLTEKEIEAIKAATTKLRDKRELVDSLQKRGSQAFDTFLDSLQET-D 79

                   ....
gi 1728919729   81 QHLE 84
Cdd:smart00114  80 QKLA 83
CARD pfam00619
Caspase recruitment domain; Motif contained in proteins involved in apoptotic signaling. ...
6-83 2.04e-18

Caspase recruitment domain; Motif contained in proteins involved in apoptotic signaling. Predicted to possess a DEATH (pfam00531) domain-like fold.


Pssm-ID: 459874 [Multi-domain]  Cd Length: 85  Bit Score: 78.76  E-value: 2.04e-18
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1728919729   6 QEALKKNRVMLAKQLL-LKELMEHMIEKDIFTTEMVEMIQAKSGSFSQNVEFLNLLPKRGPNAFSAFCEALRETkQQHL 83
Cdd:pfam00619   1 RKLLKKNRVALVERLGtLDGLLDYLLEKNVLTEEEEEKIKANPTRLDKARELLDLVLKKGPKACQIFLEALKEG-DPDL 78
CARD_CASP9 cd08326
Caspase activation and recruitment domain of Caspase-9; Caspase activation and recruitment ...
5-83 2.56e-17

Caspase activation and recruitment domain of Caspase-9; Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.


Pssm-ID: 176740  Cd Length: 84  Bit Score: 75.93  E-value: 2.56e-17
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1728919729   5 HQEALKKNRVMLAKQLLLKELMEHMIEKDIFTTEMVEMIQAKSGSFSQNVEFLNLLPKRGPNAFSAFCEALRETKQQHL 83
Cdd:cd08326     1 HRQILRRHRARLVEELQPKYLWDHLLSRGVFTPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDL 79
CARD_RAIDD cd08327
Caspase activation and recruitment domain of RIP-associated ICH-1 homologous protein with a ...
1-77 6.44e-10

Caspase activation and recruitment domain of RIP-associated ICH-1 homologous protein with a death domain; Caspase activation and recruitment domain (CARD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal CARD, which interacts with the caspase-2 CARD, and a C-terminal Death domain (DD), which interacts with the DD of PIDD. In general, CARDs are DDs associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.


Pssm-ID: 260037  Cd Length: 94  Bit Score: 55.55  E-value: 6.44e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1728919729   1 MQRCHQEALKKNRVMLAKQLLLKELM-EHMIEKDIFTTEMVEMIQAKSGSFSQNVEFLNLLPKRGPNAFSAFCEALRE 77
Cdd:cd08327     1 MEPKHKQLLRSQRLELCAELLVDGLIvQYLYQEGILTESHVEEIQSQTTSRRKTLKLLDILPNRGPKAFHAFLDSLEE 78
CARD_BCL10 cd08810
Caspase activation and recruitment domain of B-cell lymphoma 10; Caspase activation and ...
6-81 1.99e-08

Caspase activation and recruitment domain of B-cell lymphoma 10; Caspase activation and recruitment domain (CARD) similar to that found in BCL10 (B-cell lymphoma 10). BCL10 and Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1) are the integral components of CBM signalosomes. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells) and with CARMA1 to form L-CBM (CBM complex in lymphoid immune cells), to mediate activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. Both CARMA1 and CARD9 associate with BCL10 via a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.


Pssm-ID: 260072 [Multi-domain]  Cd Length: 85  Bit Score: 51.19  E-value: 1.99e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1728919729   6 QEALKKNRVMLAKQLLLKELMEHMIEKDIFTTEMVEMIQAKSGSFSQNVEFLNLLPKRGPNAFSAFCEALRETKQQ 81
Cdd:cd08810     2 KEVLEEQRHYLCDKLIADRHFDYLRSKRILTRDDCEEIQCRTTRKKRVDKLLDILAREGPDGLDALIESIRRNGTQ 77
CARD_2 pfam16739
Caspase recruitment domain; In the probable ATP-dependent RNA helicase DDX58 this CARD domain ...
5-83 7.33e-04

Caspase recruitment domain; In the probable ATP-dependent RNA helicase DDX58 this CARD domain is found near the N-terminus and interacts with the C-terminal domain.


Pssm-ID: 465251  Cd Length: 93  Bit Score: 38.34  E-value: 7.33e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728919729   5 HQEALKKNRVMLAKQLLLKELMEHMieKDIFTTEMVEMIQAK---SGSFSQNVEFLN-LLPKRGPNAFSAFCEALRETKQ 80
Cdd:pfam16739   5 YRRLLRLFRPRLKDTIKPTEILPHL--PECLTEDDKERIRAEtnnKGNTAAAELLLDrLVRSDREGWFRAFLDALRKTGH 82

                  ...
gi 1728919729  81 QHL 83
Cdd:pfam16739  83 DGL 85
CARD_MDA5_r2 cd08819
Caspase activation and recruitment domain found in MDA5, second repeat; Caspase activation and ...
20-83 2.29e-03

Caspase activation and recruitment domain found in MDA5, second repeat; Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.


Pssm-ID: 260078  Cd Length: 92  Bit Score: 36.93  E-value: 2.29e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1728919729  20 LLLKELMEHMIEKDIFTTEMVEMIQAKS---GSFSQNVEFLNLLPKRGPNAFSAFCEALRETKQQHL 83
Cdd:cd08819    18 MKTTDVCDKCLEKGLLTAEDRERILAATenhGNRSGARELLSRIVRQKEGWFSKFLQALRETEHNNL 84
CARD_CARD9-like cd08785
Caspase activation and recruitment domain of CARD9 and related proteins; Caspase activation ...
7-86 2.33e-03

Caspase activation and recruitment domain of CARD9 and related proteins; Caspase activation and recruitment domain (CARD) found in CARD9, CARD14 (CARMA2), CARD10 (CARMA3), CARD11 (CARMA1) and BCL10. BCL10 (B-cell lymphoma 10), together with Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1), are integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells), and with CARD11 to form L-CBM (CBM complex in lymphoid immune cells), which mediates activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. BCL10/Malt1 also associates with CARD10, which is more widely expressed and is not restricted to hematopoietic cells, to play a role in GPCR-induced NF-kB activation. CARD14 has also been shown to associate with BCL10. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.


Pssm-ID: 260055  Cd Length: 84  Bit Score: 36.58  E-value: 2.33e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728919729   7 EALKKNRVMLAKQLLLKELMEHMIEKDIFTTEMVEMIQAKSGSFSQNV-EFLNLLPKRGPNAFSAFCEALRETKQQHLEA 85
Cdd:cd08785     3 EALERHRHRLSRYINPSRLTPYLRQKKVLSEDDEEEILSKPSLPRNRAgYLLDILKTRGKNGYDAFLESLEFYYPELFTK 82

                  .
gi 1728919729  86 V 86
Cdd:cd08785    83 V 83
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH