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Conserved domains on  [gi|1720418114|ref|XP_030111298|]
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WASH complex subunit 2 isoform X2 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CAP-ZIP_m super family cl21113
WASH complex subunit CAP-Z interacting, central region; This domain is found on WASH complex ...
 891-983 4.05e-20

WASH complex subunit CAP-Z interacting, central region; This domain is found on WASH complex subunits FAM21 and CAP-ZIP proteins, as well as on VPEF (vaccinia virus penetration factor). This family of proteins is found in eukaryotes. Proteins in this family are typically between 305 and 1321 amino acids in length. The exact function of this region is not known.


The actual alignment was detected with superfamily member pfam15255:

Pssm-ID: 464595 [Multi-domain]  Cd Length: 140  Bit Score: 87.96  E-value: 4.05e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720418114  891 PVVPEKKGTL-----KKDHPVSLKNQDPLDSTQGSKEKSTWKTEPAQ---------SRVKVRGKRRPQTRAARRLAAQES 956
Cdd:pfam15255   32 PQIPGAKSVLpglafPSSEPARSTSPESTPTAQGSGEAGVSFDLPAQadtlhsankSRAKVTGKRRPQTRAARRLAAQES 111

                           90       100
                   ....*....|....*....|....*....
gi 1720418114  957 SEAEDVTVDRGPVAQLSS--SPVLPNGHQ 983
Cdd:pfam15255  112 SEAEDVSSPEGAGAQLASgaSPASPVASQ 140
 
Name Accession Description Interval E-value
CAP-ZIP_m pfam15255
WASH complex subunit CAP-Z interacting, central region; This domain is found on WASH complex ...
 891-983 4.05e-20

WASH complex subunit CAP-Z interacting, central region; This domain is found on WASH complex subunits FAM21 and CAP-ZIP proteins, as well as on VPEF (vaccinia virus penetration factor). This family of proteins is found in eukaryotes. Proteins in this family are typically between 305 and 1321 amino acids in length. The exact function of this region is not known.


Pssm-ID: 464595 [Multi-domain]  Cd Length: 140  Bit Score: 87.96  E-value: 4.05e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720418114  891 PVVPEKKGTL-----KKDHPVSLKNQDPLDSTQGSKEKSTWKTEPAQ---------SRVKVRGKRRPQTRAARRLAAQES 956
Cdd:pfam15255   32 PQIPGAKSVLpglafPSSEPARSTSPESTPTAQGSGEAGVSFDLPAQadtlhsankSRAKVTGKRRPQTRAARRLAAQES 111

                           90       100
                   ....*....|....*....|....*....
gi 1720418114  957 SEAEDVTVDRGPVAQLSS--SPVLPNGHQ 983
Cdd:pfam15255  112 SEAEDVSSPEGAGAQLASgaSPASPVASQ 140
 
Name Accession Description Interval E-value
CAP-ZIP_m pfam15255
WASH complex subunit CAP-Z interacting, central region; This domain is found on WASH complex ...
 891-983 4.05e-20

WASH complex subunit CAP-Z interacting, central region; This domain is found on WASH complex subunits FAM21 and CAP-ZIP proteins, as well as on VPEF (vaccinia virus penetration factor). This family of proteins is found in eukaryotes. Proteins in this family are typically between 305 and 1321 amino acids in length. The exact function of this region is not known.


Pssm-ID: 464595 [Multi-domain]  Cd Length: 140  Bit Score: 87.96  E-value: 4.05e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720418114  891 PVVPEKKGTL-----KKDHPVSLKNQDPLDSTQGSKEKSTWKTEPAQ---------SRVKVRGKRRPQTRAARRLAAQES 956
Cdd:pfam15255   32 PQIPGAKSVLpglafPSSEPARSTSPESTPTAQGSGEAGVSFDLPAQadtlhsankSRAKVTGKRRPQTRAARRLAAQES 111

                           90       100
                   ....*....|....*....|....*....
gi 1720418114  957 SEAEDVTVDRGPVAQLSS--SPVLPNGHQ 983
Cdd:pfam15255  112 SEAEDVSSPEGAGAQLASgaSPASPVASQ 140
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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