|
Name |
Accession |
Description |
Interval |
E-value |
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
1-734 |
0e+00 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 862.21 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 1 MQMTIQALQDELRIQRDLNQLFQQD--SSSRTGEPCVA--ELTEENFQRLHAEHERQAKELFLLRKTLEEMELRIETQKQ 76
Cdd:pfam10174 72 LQLTIQALQDELRAQRDLNQLLQQDftTSPVDGEDKFStpELTEENFRRLQSEHERQAKELFLLRKTLEEMELRIETQKQ 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 77 TLNARDESIKKLLEMLQSKGLSAKATEEDHERTRRLAEAEMHVHHLESLLEQKEKENNMLREEMHRRFENAPDSAKTKAL 156
Cdd:pfam10174 152 TLGARDESIKKLLEMLQSKGLPKKSGEEDWERTRRIAEAEMQLGHLEVLLDQKEKENIHLREELHRRNQLQPDPAKTKAL 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 157 QTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSSEEREEEMKQMEVYRSHSKFMKNKIGQVKQELSRKDTELLALQTK 236
Cdd:pfam10174 232 QTVIEMKDTKISSLERNIRDLEDEVQMLKTNGLLHTEDREEEIKQMEVYKSHSKFMKNKIDQLKQELSKKESELLALQTK 311
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 237 LETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDV 316
Cdd:pfam10174 312 LETLTNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKSTLAGEIRDLKDMLDV 391
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 317 KERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEID 396
Cdd:pfam10174 392 KERKINVLQKKIENLQEQLRDKDKQLAGLKERVKSLQTDSSNTDTALTTLEEALSEKERIIERLKEQREREDRERLEELE 471
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 397 TYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEAR 476
Cdd:pfam10174 472 SLKKENKDLKEKVSALQPELTEKESSLIDLKEHASSLASSGLKKDSKLKSLEIAVEQKKEECSKLENQLKKAHNAEEAVR 551
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 477 ASPEMSDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELESLTSRQVKDQNKKVANLKHKEQVEK 556
Cdd:pfam10174 552 TNPEINDRIRLLEQEVARYKEESGKAQAEVERLLGILREVENEKNDKDKKIAELESLTLRQMKEQNKKVANIKHGQQEMK 631
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 557 KKSAQMLEEARRREDSLSDSSQQlqdslrkkddrieeleealresvqitaeremvlaqeesartnaeKQVEELLMAMEKV 636
Cdd:pfam10174 632 KKGAQLLEEARRREDNLADNSQQ--------------------------------------------LQLEELMGALEKT 667
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 637 KQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSS-KKKTQEEVAALKR 715
Cdd:pfam10174 668 RQELDATKARLSSTQQSLAEKDGHLTNLRAERRKQLEEILEMKQEALLAAISEKDANIALLELSSSkKKKTQEEVMALKR 747
|
730
....*....|....*....
gi 1720416788 716 EKDRLVQQLKQQTQNRMKL 734
Cdd:pfam10174 748 EKDRLVHQLKQQTQNRMKL 766
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
47-731 |
5.85e-17 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 86.35 E-value: 5.85e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 47 HAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESikkllemlQSKGLSAKATEEDHERTRRLAEAEMhvhhlESLL 126
Cdd:PTZ00121 1076 YKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEE--------ARKAEEAKKKAEDARKAEEARKAED-----ARKA 1142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 127 EQKEKENNMLREEMHRRFENAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSSEE--REEEMKQMEV 204
Cdd:PTZ00121 1143 EEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEerKAEEARKAED 1222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 205 YRSHSKFMKNKIGQVKQELSRKDTEllalQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKET 284
Cdd:PTZ00121 1223 AKKAEAVKKAEEAKKDAEEAKKAEE----ERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKA 1298
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 285 MLNKKTKQIQDMAEEKGtqagEIHDLKDMLDVKERKVNVLQKKIEnlqEQLRDKEKQMSSLKERVKSLQADTTNTDTALT 364
Cdd:PTZ00121 1299 EEKKKADEAKKKAEEAK----KADEAKKKAEEAKKKADAAKKKAE---EAKKAAEAAKAEAEAAADEAEAAEEKAEAAEK 1371
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 365 TLEEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLlQGDLSEKEASLLDIKEHASSLASSGLKKDSRL 444
Cdd:PTZ00121 1372 KKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKK-KADEAKKKAEEKKKADEAKKKAEEAKKADEAK 1450
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 445 KTLEIAleQKKEECLKMESQLKKAHEATLEARASPEmSDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKD 524
Cdd:PTZ00121 1451 KKAEEA--KKAEEAKKKAEEAKKADEAKKKAEEAKK-ADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEA 1527
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 525 KKIAELESLTSRQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQI 604
Cdd:PTZ00121 1528 KKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKM 1607
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 605 TAERemvLAQEESARTNAEKQVEEllmamEKVKQELESMKAKLSSTQQSLAE--KETHLTNLRAERRKHLEEVLEMKQEA 682
Cdd:PTZ00121 1608 KAEE---AKKAEEAKIKAEELKKA-----EEEKKKVEQLKKKEAEEKKKAEElkKAEEENKIKAAEEAKKAEEDKKKAEE 1679
|
650 660 670 680
....*....|....*....|....*....|....*....|....*....
gi 1720416788 683 LLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQQTQNR 731
Cdd:PTZ00121 1680 AKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEEN 1728
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
175-726 |
6.13e-17 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 85.76 E-value: 6.13e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 175 RDLEEEIQMLKSNGALSseEREEEMKQMEVYRSHSKFMKNKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVL 254
Cdd:COG1196 216 RELKEELKELEAELLLL--KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYEL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 255 KESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQ 334
Cdd:COG1196 294 LAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAE 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 335 LRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQG 414
Cdd:COG1196 374 LAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAE 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 415 DLSEKEASLLDIKEHASSLAsSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASPEMSDRIQQLEREISR 494
Cdd:COG1196 454 LEEEEEALLELLAELLEEAA-LLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGV 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 495 YKDESSKAQTE---------VDRLLEILKEVENEKNDKDKKIAELESLTSRQVKDQNKKVANLKHKEQVEKKKSAQMLEE 565
Cdd:COG1196 533 EAAYEAALEAAlaaalqnivVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREAD 612
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 566 ARRREDSLSDSSQQL-QDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMK 644
Cdd:COG1196 613 ARYYVLGDTLLGRTLvAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEE 692
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 645 AKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAA----ISEKDANIALLELSSSKKKTQEEVAALKREKDRL 720
Cdd:COG1196 693 LELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEReellEELLEEEELLEEEALEELPEPPDLEELERELERL 772
|
....*.
gi 1720416788 721 VQQLKQ 726
Cdd:COG1196 773 EREIEA 778
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
40-741 |
8.93e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 82.41 E-value: 8.93e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 40 EENFQRLHAEHErQAKELFLLRKTLEEMEL-----RIETQKQTLNARDESIKKLLEMLQSKGLSAKATEEDHERTR-RLA 113
Cdd:TIGR02168 199 ERQLKSLERQAE-KAERYKELKAELRELELallvlRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRlEVS 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 114 EAEMHVHHLES-LLEQKEKENNMLREEMHRRFENAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSS 192
Cdd:TIGR02168 278 ELEEEIEELQKeLYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLE 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 193 EEREEEMKQMEVYRSHSKFMKNKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLtaKEQRAAILQTEV 272
Cdd:TIGR02168 358 AELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEI--EELLKKLEEAEL 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 273 DALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVK-- 350
Cdd:TIGR02168 436 KELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKnq 515
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 351 ------------------------------SLQADTTNTDTALTTLEEALADKE---RTIERLKEQRDR----DEREKQE 393
Cdd:TIGR02168 516 sglsgilgvlselisvdegyeaaieaalggRLQAVVVENLNAAKKAIAFLKQNElgrVTFLPLDSIKGTeiqgNDREILK 595
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 394 EIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSG-LKKDSRLKTLE------------------------ 448
Cdd:TIGR02168 596 NIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKkLRPGYRIVTLDgdlvrpggvitggsaktnssiler 675
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 449 -IALEQKKEECLKMESQLKKAHEATLEARaspemsDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEkndkdkki 527
Cdd:TIGR02168 676 rREIEELEEKIEELEEKIAELEKALAELR------KELEELEEELEQLRKELEELSRQISALRKDLARLEAE-------- 741
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 528 AELESLTSRQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAE 607
Cdd:TIGR02168 742 VEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAAN 821
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 608 REMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAI 687
Cdd:TIGR02168 822 LRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSE 901
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....
gi 1720416788 688 SEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQQTQNRMKLMADNYED 741
Cdd:TIGR02168 902 ELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEE 955
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
154-720 |
1.29e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 81.52 E-value: 1.29e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 154 KALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSSEEREEEMKQMEVYRSHSKFMKNKIGQVKQELSRKDTELLAL 233
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRREL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 234 QTKLETLTNQfsdskqhIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDM 313
Cdd:COG1196 315 EERLEELEEE-------LAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEE 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 314 LDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQE 393
Cdd:COG1196 388 LLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAE 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 394 EIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKdsrlktlEIALEQKKEECLKMESQLKKAHEATL 473
Cdd:COG1196 468 LLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAAL-------LLAGLRGLAGAVAVLIGVEAAYEAAL 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 474 EARASPEMSDRIQQLEREISRYKDESSKAQTEvdRLLEILKEVENEKNDKDKKIAELESLTSRQVKDQNKKVANLKHKEQ 553
Cdd:COG1196 541 EAALAAALQNIVVEDDEVAAAAIEYLKAAKAG--RATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVL 618
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 554 VEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAM 633
Cdd:COG1196 619 GDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEA 698
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 634 EKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLElssskkKTQEEVAAL 713
Cdd:COG1196 699 LLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLE------ELERELERL 772
|
....*..
gi 1720416788 714 KREKDRL 720
Cdd:COG1196 773 EREIEAL 779
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
43-726 |
5.30e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 79.72 E-value: 5.30e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 43 FQRLHAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGlsaKATEEDHERTRRLAEAEMHVHHL 122
Cdd:TIGR02168 276 VSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELE---SKLDELAEELAELEEKLEELKEE 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 123 ESLLEQKEKENNMLREEMHRRFEnapdsaktkALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNgaLSSEEREEEMKQM 202
Cdd:TIGR02168 353 LESLEAELEELEAELEELESRLE---------ELEEQLETLRSKVAQLELQIASLNNEIERLEAR--LERLEDRRERLQQ 421
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 203 EVYRSHSKFMKNKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEK 282
Cdd:TIGR02168 422 EIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENL 501
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 283 EtmlnKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKER----KVNVLQKKI-----ENLQEQLRDKEKQMSSLKERVKSLQ 353
Cdd:TIGR02168 502 E----GFSEGVKALLKNQSGLSGILGVLSELISVDEGyeaaIEAALGGRLqavvvENLNAAKKAIAFLKQNELGRVTFLP 577
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 354 ADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQ------------EEIDTYKKDLKDLREKVSL--LQGDLSEK 419
Cdd:TIGR02168 578 LDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKalsyllggvlvvDDLDNALELAKKLRPGYRIvtLDGDLVRP 657
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 420 EASlldIKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEA--------RASPEMSDRIQQLERE 491
Cdd:TIGR02168 658 GGV---ITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELeeeleqlrKELEELSRQISALRKD 734
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 492 ISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELESL---TSRQVKDQNKKVANLKHKEQVEKKKSAQMLEEARR 568
Cdd:TIGR02168 735 LARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEElaeAEAEIEELEAQIEQLKEELKALREALDELRAELTL 814
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 569 REDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMV---LAQEESARTNAEKQVEELLMAMEKVKQELESMKA 645
Cdd:TIGR02168 815 LNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLaaeIEELEELIEELESELEALLNERASLEEALALLRS 894
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 646 KLSSTQQSLAEKETHLTNLRAER---RKHLEEV------LEMKQEALLAAISEkDANIALLELSSSKKKTQEEVAALKRE 716
Cdd:TIGR02168 895 ELEELSEELRELESKRSELRRELeelREKLAQLelrlegLEVRIDNLQERLSE-EYSLTLEEAEALENKIEDDEEEARRR 973
|
730
....*....|
gi 1720416788 717 KDRLVQQLKQ 726
Cdd:TIGR02168 974 LKRLENKIKE 983
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
250-742 |
1.63e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 78.05 E-value: 1.63e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 250 HIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIE 329
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRR 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 330 NLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDER---EKQEEIDTYKKDLKDLR 406
Cdd:COG1196 313 ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAelaEAEEELEELAEELLEAL 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 407 EKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARAS-PEMSDRI 485
Cdd:COG1196 393 RAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELlAELLEEA 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 486 QQLEREISRYKDESSKAQTEVDRLLEILKEVENEKND---------------------KDKKIAELESLTSRQVKDQNKK 544
Cdd:COG1196 473 ALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGvkaalllaglrglagavavliGVEAAYEAALEAALAAALQNIV 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 545 VANLK--------HKEQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRK-KDDRIEELEEALRESVQITAEREMVLAQE 615
Cdd:COG1196 553 VEDDEvaaaaieyLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDlVASDLREADARYYVLGDTLLGRTLVAARL 632
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 616 ESARTNAEKQVEELLmameKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIA 695
Cdd:COG1196 633 EAALRRAVTLAGRLR----EVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERE 708
|
490 500 510 520
....*....|....*....|....*....|....*....|....*..
gi 1720416788 696 LLELSSSKKKTQEEVAALKREKDRLVQQLKQQTQNRMKLMADNYEDD 742
Cdd:COG1196 709 LAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEE 755
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
6-647 |
3.28e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 73.82 E-value: 3.28e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 6 QALQDELRiQRDLNQLFQQDsssrtgepcvaELTEENFQRLHAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESI 85
Cdd:COG1196 216 RELKEELK-ELEAELLLLKL-----------RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELEL 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 86 KKLLEMLQSKGLSAKATEEDHERTRRLAEAemhvhhLESLLEQKEKENNMLREEMHRrfenapDSAKTKALQTVIEMKDS 165
Cdd:COG1196 284 EEAQAEEYELLAELARLEQDIARLEERRRE------LEERLEELEEELAELEEELEE------LEEELEELEEELEEAEE 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 166 KISSMERGLRDLEEEIQMLKSNGALSSEEREEEmkqmevyrshskfmknkigqvKQELSRKDTELLALQTKLETLTNQFS 245
Cdd:COG1196 352 ELEEAEAELAEAEEALLEAEAELAEAEEELEEL---------------------AEELLEALRAAAELAAQLEELEEAEE 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 246 DSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQ 325
Cdd:COG1196 411 ALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAA 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 326 KKIENLQEQLRDKE-KQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDErekqeeidtykkDLKD 404
Cdd:COG1196 491 ARLLLLLEAEADYEgFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVE------------DDEV 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 405 LREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASPEMSDR 484
Cdd:COG1196 559 AAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRR 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 485 IQQLEREIsrykDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELESLTSRQVKDQNKKVANLKHKEQVEKKKSAQMLE 564
Cdd:COG1196 639 AVTLAGRL----REVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEE 714
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 565 EARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEEL----LMAME---KVK 637
Cdd:COG1196 715 ERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALgpvnLLAIEeyeELE 794
|
650
....*....|
gi 1720416788 638 QELESMKAKL 647
Cdd:COG1196 795 ERYDFLSEQR 804
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
48-716 |
4.25e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 73.56 E-value: 4.25e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 48 AEHERQAKELFLLRKTLEEMELRIETQKQTLN------ARDESIKKLLEMLQSKGLSAKATE-EDHER-----TRRLAEA 115
Cdd:TIGR02169 170 RKKEKALEELEEVEENIERLDLIIDEKRQQLErlrrerEKAERYQALLKEKREYEGYELLKEkEALERqkeaiERQLASL 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 116 EMHVHHLESLLEQKEKENN---MLREEMHRRFEnAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIqmlksngalss 192
Cdd:TIGR02169 250 EEELEKLTEEISELEKRLEeieQLLEELNKKIK-DLGEEEQLRVKEKIGELEAEIASLERSIAEKEREL----------- 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 193 EEREEEMKQMEVyrshskfmknKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEV 272
Cdd:TIGR02169 318 EDAEERLAKLEA----------EIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDEL 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 273 DALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSL 352
Cdd:TIGR02169 388 KDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKY 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 353 QADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEIDTyKKDLKDLREKVSLLQGDLSEKE------------ 420
Cdd:TIGR02169 468 EQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAV-EEVLKASIQGVHGTVAQLGSVGeryataievaag 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 421 ----------------------------ASLLDI-KEHASSLASSGLKKDS----------------------------- 442
Cdd:TIGR02169 547 nrlnnvvveddavakeaiellkrrkagrATFLPLnKMRDERRDLSILSEDGvigfavdlvefdpkyepafkyvfgdtlvv 626
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 443 -------------RLKTLEIALEQKKEECLKMESQLKKAHEATLEARAS-PEMSDRIQQLEREISRYKDESSKAQTEVDR 508
Cdd:TIGR02169 627 edieaarrlmgkyRMVTLEGELFEKSGAMTGGSRAPRGGILFSRSEPAElQRLRERLEGLKRELSSLQSELRRIENRLDE 706
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 509 LL-----------EILKEVENEKNDKDKKIAELESLTSRQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRR------ED 571
Cdd:TIGR02169 707 LSqelsdasrkigEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEealndlEA 786
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 572 SLSDSS-QQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSST 650
Cdd:TIGR02169 787 RLSHSRiPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEEL 866
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1720416788 651 QQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKRE 716
Cdd:TIGR02169 867 EEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEE 932
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
213-594 |
1.77e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.16 E-value: 1.77e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 213 KNKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQ 292
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKE 755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 293 IQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALAD 372
Cdd:TIGR02168 756 LTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAA 835
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 373 KERTIERLKEQRdrdeREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIALE 452
Cdd:TIGR02168 836 TERRLEDLEEQI----EELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRS 911
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 453 QKKEECLKMESQLKKAHEATLEARAspemsDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELes 532
Cdd:TIGR02168 912 ELRRELEELREKLAQLELRLEGLEV-----RIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKEL-- 984
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1720416788 533 ltsrqvkdqnkKVANLKHKEQVEKKKsaQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEEL 594
Cdd:TIGR02168 985 -----------GPVNLAAIEEYEELK--ERYDFLTAQKEDLTEAKETLEEAIEEIDREARER 1033
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
212-601 |
2.47e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 67.79 E-value: 2.47e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 212 MKNKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTK 291
Cdd:TIGR02169 686 LKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEA 765
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 292 QIQDMAEEKGTQAGEIHDLKDMLDvkerkvnvlQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALA 371
Cdd:TIGR02169 766 RIEELEEDLHKLEEALNDLEARLS---------HSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQ 836
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 372 DKERTIERLKEQRDrderEKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIAL 451
Cdd:TIGR02169 837 ELQEQRIDLKEQIK----SIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQI 912
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 452 EQKKEeclkmesqlkkaHEATLEARASpEMSDRIQQLEREISRYKDESSKaqtevdrlLEILKEVENEKNDKDKKIAELE 531
Cdd:TIGR02169 913 EKKRK------------RLSELKAKLE-ALEEELSEIEDPKGEDEEIPEE--------ELSLEDVQAELQRVEEEIRALE 971
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 532 SLTSRQVKDqnkkvanlkhkeqvekkksaqmLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRES 601
Cdd:TIGR02169 972 PVNMLAIQE----------------------YEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKREV 1019
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
193-679 |
1.05e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 65.47 E-value: 1.05e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 193 EEREEEMKQMEVYRSHSKFMKNKIGQVKQELSRKDTELLALQTKLETLtnqfSDSKQHIEVLKESLTAKEQRAAILQTEV 272
Cdd:PRK03918 179 ERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKL----EKEVKELEELKEEIEELEKELESLEGSK 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 273 DALRLRLEEKETMLNKKTKQIQDMAE---------EKGTQAGEIHDLKDMLDVKERKVNV----LQKKIENLQEQLRD-- 337
Cdd:PRK03918 255 RKLEEKIRELEERIEELKKEIEELEEkvkelkelkEKAEEYIKLSEFYEEYLDELREIEKrlsrLEEEINGIEERIKEle 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 338 -KEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKER-----------TIERLKEQRDRDEREKQEeidtYKKDLKDL 405
Cdd:PRK03918 335 eKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEElerlkkrltglTPEKLEKELEELEKAKEE----IEEEISKI 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 406 REKVSLLQGDLSEKEASLLDIK---------------EHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHE 470
Cdd:PRK03918 411 TARIGELKKEIKELKKAIEELKkakgkcpvcgrelteEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLK 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 471 ATLEARASPEMSDRIQQLEREISRYKDESSKAQTE------------------VDRLLEILKEVENEKNDKDKKIAELEs 532
Cdd:PRK03918 491 KESELIKLKELAEQLKELEEKLKKYNLEELEKKAEeyeklkekliklkgeiksLKKELEKLEELKKKLAELEKKLDELE- 569
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 533 ltsRQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVL 612
Cdd:PRK03918 570 ---EELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELR 646
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720416788 613 AQ-EESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMK 679
Cdd:PRK03918 647 KElEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELE 714
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
149-718 |
1.17e-10 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 65.43 E-value: 1.17e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 149 DSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSSEEREEEMKQMEVYRSHSKFMKNKIGQVKQELSRKDT 228
Cdd:TIGR04523 66 DEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLT 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 229 ELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGtqagEIH 308
Cdd:TIGR04523 146 EIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLES----QIS 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 309 DLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDE 388
Cdd:TIGR04523 222 ELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLN 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 389 REKQEEID-TYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIALEQKKEEC--LKMESQL 465
Cdd:TIGR04523 302 NQKEQDWNkELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIekLKKENQS 381
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 466 KKAHEATLEARAS------PEMSDRIQQLEREISRYKDESSKAQTEVDRLLEI-------LKEVENEKNDKDKKIAELES 532
Cdd:TIGR04523 382 YKQEIKNLESQINdleskiQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETiiknnseIKDLTNQDSVKELIIKNLDN 461
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 533 LTSRQvKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVL 612
Cdd:TIGR04523 462 TRESL-ETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKI 540
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 613 AQEES---------ARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEAL 683
Cdd:TIGR04523 541 SDLEDelnkddfelKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELE 620
|
570 580 590
....*....|....*....|....*....|....*
gi 1720416788 684 LAAISEKDANIALLELSSSKKKTQEEVAALKREKD 718
Cdd:TIGR04523 621 KAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIK 655
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
164-506 |
1.51e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 65.09 E-value: 1.51e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 164 DSKIssmERGLRDLEEEIQMLKSNGALSSEEREEeMKQMEVYRSHS-KFMKNKIGQVKQELSRKDTELLALQTKLETLTN 242
Cdd:TIGR02169 169 DRKK---EKALEELEEVEENIERLDLIIDEKRQQ-LERLRREREKAeRYQALLKEKREYEGYELLKEKEALERQKEAIER 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 243 QFSDSKQHIEVLKEsltakeqraailqtEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQ--------AGEIHDLKDML 314
Cdd:TIGR02169 245 QLASLEEELEKLTE--------------EISELEKRLEEIEQLLEELNKKIKDLGEEEQLRvkekigelEAEIASLERSI 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 315 DVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERL--KEQRDRDE-REK 391
Cdd:TIGR02169 311 AEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVdkEFAETRDElKDY 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 392 QEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEA 471
Cdd:TIGR02169 391 REKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQE 470
|
330 340 350
....*....|....*....|....*....|....*.
gi 1720416788 472 TLEARAS-PEMSDRIQQLEREISRYKDESSKAQTEV 506
Cdd:TIGR02169 471 LYDLKEEyDRVEKELSKLQRELAEAEAQARASEERV 506
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
213-720 |
5.41e-10 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 63.14 E-value: 5.41e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 213 KNKIGQVKQELSRK-DTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTK 291
Cdd:PRK02224 186 RGSLDQLKAQIEEKeEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRE 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 292 QIQDMAEEKGTQAGEIHDLKDMLDVkerkvnvLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALA 371
Cdd:PRK02224 266 TIAETEREREELAEEVRDLRERLEE-------LEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQ 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 372 DKERTIERLKEQ-RDRDER--EKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLE 448
Cdd:PRK02224 339 AHNEEAESLREDaDDLEERaeELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELR 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 449 IALEQKKEECLKMESQLKKAHEATLEARA------SPEMSDRIqqlerEISRYKDESSKAQTEVDRLLEILKEVENEKND 522
Cdd:PRK02224 419 EERDELREREAELEATLRTARERVEEAEAlleagkCPECGQPV-----EGSPHVETIEEDRERVEELEAELEDLEEEVEE 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 523 KDKKIAELESL--TSRQVKDQNKKVANLkhKEQVEKKKSAqmLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRE 600
Cdd:PRK02224 494 VEERLERAEDLveAEDRIERLEERREDL--EELIAERRET--IEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEE 569
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 601 SVQITAEREMVLAQEESARTNAEKqVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRaERRKHLEE------ 674
Cdd:PRK02224 570 AREEVAELNSKLAELKERIESLER-IRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKR-ERKRELEAefdear 647
|
490 500 510 520
....*....|....*....|....*....|....*....|....*.
gi 1720416788 675 VLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRL 720
Cdd:PRK02224 648 IEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEEL 693
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
49-724 |
1.99e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 61.62 E-value: 1.99e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 49 EHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKgLSAKATEEDHERTRRLAEAEMHVHHLESLLEQ 128
Cdd:TIGR02169 234 ALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKK-IKDLGEEEQLRVKEKIGELEAEIASLERSIAE 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 129 KEKENNMLREEMhrrfenAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSSEEREEEMKQMEVYRSH 208
Cdd:TIGR02169 313 KERELEDAEERL------AKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDE 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 209 SKFMKNKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNK 288
Cdd:TIGR02169 387 LKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSK 466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 289 KTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIEN---LQEQLRDKEK-------QMSSLKER-VKSLQADTT 357
Cdd:TIGR02169 467 YEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGgraVEEVLKASIQgvhgtvaQLGSVGERyATAIEVAAG 546
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 358 NTDTALTTLEEALAdkERTIERLKEQRD-----------RDEREKQEEIDT-----YKKDLKDLREKVS----------- 410
Cdd:TIGR02169 547 NRLNNVVVEDDAVA--KEAIELLKRRKAgratflplnkmRDERRDLSILSEdgvigFAVDLVEFDPKYEpafkyvfgdtl 624
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 411 ------------------LLQGDLSEKEASLLDIKEHASSLAS-------SGLKKDSRLKTLEIALEQKKEECLKMESQL 465
Cdd:TIGR02169 625 vvedieaarrlmgkyrmvTLEGELFEKSGAMTGGSRAPRGGILfsrsepaELQRLRERLEGLKRELSSLQSELRRIENRL 704
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 466 KKAHEATLEARAS-PEMSDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELESLTSRQVKDQNKK 544
Cdd:TIGR02169 705 DELSQELSDASRKiGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDL 784
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 545 VANLKHKEQVEKKKSAQMLEEARRR-EDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEEsartNAE 623
Cdd:TIGR02169 785 EARLSHSRIPEIQAELSKLEEEVSRiEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIE----NLN 860
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 624 KQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLR---------AERRKHLEEVLEMKQEALLAAISEKDANI 694
Cdd:TIGR02169 861 GKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELErkieeleaqIEKKRKRLSELKAKLEALEEELSEIEDPK 940
|
730 740 750
....*....|....*....|....*....|
gi 1720416788 695 ALLELSSSKKKTQEEVAALKREKDRLVQQL 724
Cdd:TIGR02169 941 GEDEEIPEEELSLEDVQAELQRVEEEIRAL 970
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
482-731 |
2.29e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.11 E-value: 2.29e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 482 SDRIQQLEREISRYKDESSKAqtevdrllEILKEVENEKNDKDKKIA--ELESLTSRQVKDQNKKVANLKHKEQVEKKKS 559
Cdd:COG1196 192 EDILGELERQLEPLERQAEKA--------ERYRELKEELKELEAELLllKLRELEAELEELEAELEELEAELEELEAELA 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 560 A--QMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVK 637
Cdd:COG1196 264 EleAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELE 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 638 QELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREK 717
Cdd:COG1196 344 EELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEEL 423
|
250
....*....|....
gi 1720416788 718 DRLVQQLKQQTQNR 731
Cdd:COG1196 424 EELEEALAELEEEE 437
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
165-522 |
2.31e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 61.24 E-value: 2.31e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 165 SKISSMERGLRDLEEEIQMLKSNGALSSEEREEEMKQMEVyrshskfMKNKIGQVKQELSRKDTELLALQTKLETLTNQF 244
Cdd:TIGR02169 709 QELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSS-------LEQEIENVKSELKELEARIEELEEDLHKLEEAL 781
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 245 SDSKQHIevLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVL 324
Cdd:TIGR02169 782 NDLEARL--SHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENL 859
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 325 QKKIENLQEQLRDKEKQMSSLKERVKSLQadttntdtalttleealADKERTIERLKEQRDRdEREKQEEIDTYKKDLKD 404
Cdd:TIGR02169 860 NGKKEELEEELEELEAALRDLESRLGDLK-----------------KERDELEAQLRELERK-IEELEAQIEKKRKRLSE 921
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 405 LREKVSLLQGDLSEKEASLLDIKEHASSLASsglkkdsrlktleiaLEQKKEECLKMESQLKKAHEATLEAraspemsdr 484
Cdd:TIGR02169 922 LKAKLEALEEELSEIEDPKGEDEEIPEEELS---------------LEDVQAELQRVEEEIRALEPVNMLA--------- 977
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 1720416788 485 IQQLEREISRYKDESSKAQT---EVDRLLEILKEVENEKND 522
Cdd:TIGR02169 978 IQEYEEVLKRLDELKEKRAKleeERKAILERIEEYEKKKRE 1018
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
99-731 |
3.76e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 60.85 E-value: 3.76e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 99 AKATEEDHERTRRLAEAEMHVHHLESLLEQKEKENN------MLREEMhRRFENAPDSAKTKALQTVIEMKDSKISSMER 172
Cdd:TIGR02169 173 EKALEELEEVEENIERLDLIIDEKRQQLERLRREREkaeryqALLKEK-REYEGYELLKEKEALERQKEAIERQLASLEE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 173 GLRDLEEEIQML-KSNGALSSEEREEEMKQMEVYRSHSKFMKNKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHI 251
Cdd:TIGR02169 252 ELEKLTEEISELeKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEI 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 252 EVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENL 331
Cdd:TIGR02169 332 DKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRL 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 332 QEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEidtyKKDLKDLREKVSL 411
Cdd:TIGR02169 412 QEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDL----KEEYDRVEKELSK 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 412 LQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIALEQkkeeCLKMESQLKKAHEATLEARASPEMSDRIQQLERE 491
Cdd:TIGR02169 488 LQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQ----LGSVGERYATAIEVAAGNRLNNVVVEDDAVAKEA 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 492 ISRYKDESSKAQT--------EVDRLLEILKE-----VENEKNDKDKKIAE-----------LESL-TSRQVKDQNKKV- 545
Cdd:TIGR02169 564 IELLKRRKAGRATflplnkmrDERRDLSILSEdgvigFAVDLVEFDPKYEPafkyvfgdtlvVEDIeAARRLMGKYRMVt 643
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 546 ---------------ANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAERem 610
Cdd:TIGR02169 644 legelfeksgamtggSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEI-- 721
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 611 vlaqeesartnaEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAeRRKHLEEVLEMKQEAlLAAISEK 690
Cdd:TIGR02169 722 ------------EKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEA-RIEELEEDLHKLEEA-LNDLEAR 787
|
650 660 670 680
....*....|....*....|....*....|....*....|.
gi 1720416788 691 DANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQQTQNR 731
Cdd:TIGR02169 788 LSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEK 828
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
48-772 |
6.89e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 60.15 E-value: 6.89e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 48 AEHERQAKE--LFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLSaKATEEDHERTRRLAEAEMHVHHLESL 125
Cdd:PTZ00121 1142 AEEARKAEDakRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELR-KAEDARKAEAARKAEEERKAEEARKA 1220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 126 LEQKEKENNMLREEMHRRFENAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEiQMLKSNGALSSEE--REEEMKQME 203
Cdd:PTZ00121 1221 EDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAE-EARKADELKKAEEkkKADEAKKAE 1299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 204 VYRSHSKFMKNKIGQVKQELSRKDTEllALQTKLETLTNQFSDSKQHIEVLK--ESLTAKEQRAAILQTEVDALRLRLEE 281
Cdd:PTZ00121 1300 EKKKADEAKKKAEEAKKADEAKKKAE--EAKKKADAAKKKAEEAKKAAEAAKaeAEAAADEAEAAEEKAEAAEKKKEEAK 1377
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 282 KETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKE---RKVNVLQKKIENLQ---------EQLRDKEKQMSSLKERV 349
Cdd:PTZ00121 1378 KKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAaakKKADEAKKKAEEKKkadeakkkaEEAKKADEAKKKAEEAK 1457
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 350 KSLQADTTNTDTALTTLEEALADKERTIERLKEQRDR-----DEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLL 424
Cdd:PTZ00121 1458 KAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEakkkaDEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKAD 1537
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 425 DIKEHASSLASSGLKKDSRLKTLE---IALEQKKEE-----CLKMESQLKKAHEATLEARASPEMSDRIQQLER----EI 492
Cdd:PTZ00121 1538 EAKKAEEKKKADELKKAEELKKAEekkKAEEAKKAEedknmALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEakkaEE 1617
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 493 SRYKDESSKAQTEVDRLLEILKEVENE---KNDKDKKIAELESLTSRQVK---DQNKKVANLKHKEQVEKKKSAQMLEEA 566
Cdd:PTZ00121 1618 AKIKAEELKKAEEEKKKVEQLKKKEAEekkKAEELKKAEEENKIKAAEEAkkaEEDKKKAEEAKKAEEDEKKAAEALKKE 1697
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 567 RRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAK 646
Cdd:PTZ00121 1698 AEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEK 1777
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 647 LSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEAllaaisekdANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQ 726
Cdd:PTZ00121 1778 EAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEG---------GKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADA 1848
|
730 740 750 760
....*....|....*....|....*....|....*....|....*.
gi 1720416788 727 QTQNRMKLMADNYEDDHFRSSRSNQTNHKpspDQIIQPLLELDQNR 772
Cdd:PTZ00121 1849 FEKHKFNKNNENGEDGNKEADFNKEKDLK---EDDEEEIEEADEIE 1891
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
35-629 |
7.61e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 59.69 E-value: 7.61e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 35 VAELTEENFQRLhAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLSAKATEEDhertrrlae 114
Cdd:PRK03918 191 IEELIKEKEKEL-EEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEK--------- 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 115 aemhVHHLESLLEQKEKENNMLREEMHRRFENAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLksngalssee 194
Cdd:PRK03918 261 ----IRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGI---------- 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 195 rEEEMKQMEVYRSHSKFMKNKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDA 274
Cdd:PRK03918 327 -EERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEE 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 275 LRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKvnvlqKKIENLQEQLRDKEKQMSSLKERVKSLQA 354
Cdd:PRK03918 406 EISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRK-----ELLEEYTAELKRIEKELKEIEEKERKLRK 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 355 DTTNTDTALTTLEEALADKErTIERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHassla 434
Cdd:PRK03918 481 ELRELEKVLKKESELIKLKE-LAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEEL----- 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 435 ssglkkDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEaraspEMSDRIQQLE-------------REISRYKDESSK 501
Cdd:PRK03918 555 ------KKKLAELEKKLDELEEELAELLKELEELGFESVE-----ELEERLKELEpfyneylelkdaeKELEREEKELKK 623
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 502 AQTEVDRLLEILKEVENEKNDKDKKIAELESLTSrqvKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQ 581
Cdd:PRK03918 624 LEEELDKAFEELAETEKRLEELRKELEELEKKYS---EEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLK 700
|
570 580 590 600
....*....|....*....|....*....|....*....|....*...
gi 1720416788 582 DSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEEL 629
Cdd:PRK03918 701 EELEEREKAKKELEKLEKALERVEELREKVKKYKALLKERALSKVGEI 748
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
213-421 |
1.36e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 57.85 E-value: 1.36e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 213 KNKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQ 292
Cdd:COG4942 33 QQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLRA 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 293 IQDMAEEKGTQ----AGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEE 368
Cdd:COG4942 113 LYRLGRQPPLAlllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEA 192
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1720416788 369 ALADKERTIERLKeqrdRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEA 421
Cdd:COG4942 193 LKAERQKLLARLE----KELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
168-726 |
1.92e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 58.21 E-value: 1.92e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 168 SSMERGLRDLEEEIQMLKsnGALSSEEREEEMKQMEVYRSHSKFMKNKIGQVKQELSRKDTELLALQTKLETLTNQFSDS 247
Cdd:pfam15921 220 SAISKILRELDTEISYLK--GRIFPVEDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSI 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 248 KQHIEVLKESltAKEQRA------AILQTEVDALRLRLEEKETMLNKKTKQIQ------------------DMAEEKGTQ 303
Cdd:pfam15921 298 QSQLEIIQEQ--ARNQNSmymrqlSDLESTVSQLRSELREAKRMYEDKIEELEkqlvlanseltearterdQFSQESGNL 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 304 AGEIHDLKDMLDVKERKVNVLQKK--------------IENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTleeA 369
Cdd:pfam15921 376 DDQLQKLLADLHKREKELSLEKEQnkrlwdrdtgnsitIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMA---A 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 370 LADKERTIERLKEQRDRDEREKQ------EEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASS---GLKK 440
Cdd:pfam15921 453 IQGKNESLEKVSSLTAQLESTKEmlrkvvEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRvdlKLQE 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 441 DSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASPE-MSDRIQQLEREISRYKDESSKAQTEV-DRLLEiLKEVEN 518
Cdd:pfam15921 533 LQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIEnMTQLVGQHGRTAGAMQVEKAQLEKEInDRRLE-LQEFKI 611
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 519 EKNDKDKKIAELESLTS----RQVKDQNKKVANLKHKEQVEKKKSaQMLEE---ARRREDSLSDSSQQLQDSLRKKDDRI 591
Cdd:pfam15921 612 LKDKKDAKIRELEARVSdlelEKVKLVNAGSERLRAVKDIKQERD-QLLNEvktSRNELNSLSEDYEVLKRNFRNKSEEM 690
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 592 EELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKvkqELESMKAKLSSTQQSLAEKETHLTNLRAERRKH 671
Cdd:pfam15921 691 ETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQK---QITAKRGQIDALQSKIQFLEEAMTNANKEKHFL 767
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*
gi 1720416788 672 LEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQ 726
Cdd:pfam15921 768 KEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAE 822
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
236-780 |
1.96e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 58.13 E-value: 1.96e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 236 KLETLTNQFSDSKQHIE-VLKESLTAKEQ-RAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDM 313
Cdd:PRK02224 163 KLEEYRERASDARLGVErVLSDQRGSLDQlKAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEV 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 314 LDVKERK---VNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDERE 390
Cdd:PRK02224 243 LEEHEERreeLETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDR 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 391 KQEeidtykkdlkdlrekvslLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLeialeqkKEECLKMESQLKKAHE 470
Cdd:PRK02224 323 DEE------------------LRDRLEECRVAAQAHNEEAESLREDADDLEERAEEL-------REEAAELESELEEARE 377
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 471 ATLEARaspemsDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELESlTSRQVKDQNKKVANLKH 550
Cdd:PRK02224 378 AVEDRR------EEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEA-TLRTARERVEEAEALLE 450
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 551 K-------EQVEKKKSAQMLEEARRREDSLSDSSQQLQD-------------SLRKKDDRIEELEEALRESVQITAEREM 610
Cdd:PRK02224 451 AgkcpecgQPVEGSPHVETIEEDRERVEELEAELEDLEEeveeveerleraeDLVEAEDRIERLEERREDLEELIAERRE 530
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 611 VLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLrAERRKHLEEVlemkqEALLAAISEK 690
Cdd:PRK02224 531 TIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAEL-KERIESLERI-----RTLLAAIADA 604
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 691 DANIALLElssSKKKTQEEVAALKREKdrlvqqlKQQTQNRMKLMADNYEDDHFRSSRSNQTNHKPSPDQIIQPLLELDQ 770
Cdd:PRK02224 605 EDEIERLR---EKREALAELNDERRER-------LAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELRE 674
|
570
....*....|
gi 1720416788 771 NRSKLKLYIG 780
Cdd:PRK02224 675 ERDDLQAEIG 684
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
166-742 |
3.27e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 57.34 E-value: 3.27e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 166 KISSMERGLRDLEEEIQMLKSNGALSSEEREEEMKQMEVYRSHSKFMKNKIGQVKQELSRKDTELLALQTKLETLTNQFS 245
Cdd:TIGR04523 41 KLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKN 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 246 DSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQ 325
Cdd:TIGR04523 121 KLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLE 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 326 KKIENLQ---EQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEIdtykKDL 402
Cdd:TIGR04523 201 LLLSNLKkkiQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQ----KEL 276
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 403 KDLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDsrlktleiaLEQKKEECLKMESQLKKAHEATlearasPEMS 482
Cdd:TIGR04523 277 EQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKELKSE---------LKNQEKKLEEIQNQISQNNKII------SQLN 341
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 483 DRIQQLEREISRYKDESSKAQTEvdrLLEILKEVENEKNDKDKKIAELESLTSRQVKDQNKkvanLKHKEQVEKKKSAQm 562
Cdd:TIGR04523 342 EQISQLKKELTNSESENSEKQRE---LEEKQNEIEKLKKENQSYKQEIKNLESQINDLESK----IQNQEKLNQQKDEQ- 413
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 563 LEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALresvqitAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELES 642
Cdd:TIGR04523 414 IKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQD-------SVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQ 486
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 643 MKAKLSSTQQSLAEKETHLTNLRAERRKHLEEV--LEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRL 720
Cdd:TIGR04523 487 KQKELKSKEKELKKLNEEKKELEEKVKDLTKKIssLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEKEIDEK 566
|
570 580
....*....|....*....|..
gi 1720416788 721 VQQLKQQTQNRMKLMADNYEDD 742
Cdd:TIGR04523 567 NKEIEELKQTQKSLKKKQEEKQ 588
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
53-405 |
4.70e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.99 E-value: 4.70e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 53 QAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLqskglsAKATEEDHERTRRLAEAEMHVHHLESLLEQKEKE 132
Cdd:TIGR02168 675 RRREIEELEEKIEELEEKIAELEKALAELRKELEELEEEL------EQLRKELEELSRQISALRKDLARLEAEVEQLEER 748
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 133 NNMLREEMhrrfenapdsaktKALQTVIEMKDSKISSMERGLRDLEEEIqmlksngalssEEREEEMKQmevyrshskfM 212
Cdd:TIGR02168 749 IAQLSKEL-------------TELEAEIEELEERLEEAEEELAEAEAEI-----------EELEAQIEQ----------L 794
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 213 KNKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQ 292
Cdd:TIGR02168 795 KEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESE 874
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 293 IQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALAD 372
Cdd:TIGR02168 875 LEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLE 954
|
330 340 350
....*....|....*....|....*....|...
gi 1720416788 373 kerTIERLKEQRDRDEREKQEEIDTYKKDLKDL 405
Cdd:TIGR02168 955 ---EAEALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
235-733 |
4.93e-08 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 57.16 E-value: 4.93e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 235 TKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAE-EKGTQAGEIHDLKDM 313
Cdd:pfam12128 244 TKLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNgELSAADAAVAKDRSE 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 314 LDV-KERKVNVLQKKIENL---QEQLRDKEKQMSSLKERVKSLQA-----DTTNTDTALTTLEEALADKERTIERLKEQR 384
Cdd:pfam12128 324 LEAlEDQHGAFLDADIETAaadQEQLPSWQSELENLEERLKALTGkhqdvTAKYNRRRSKIKEQNNRDIAGIKDKLAKIR 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 385 DRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEaslldiKEHASSLASSGLKKDSRLKTLEIAL--EQKKEECLKME 462
Cdd:pfam12128 404 EARDRQLAVAEDDLQALESELREQLEAGKLEFNEEE------YRLKSRLGELKLRLNQATATPELLLqlENFDERIERAR 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 463 SQLKKAHEATLEAR--------ASPEMSDRIQQLEREISRYKDESSKAQTEVD----RLLEILKEVENEKNDKDKKIAEL 530
Cdd:pfam12128 478 EEQEAANAEVERLQselrqarkRRDQASEALRQASRRLEERQSALDELELQLFpqagTLLHFLRKEAPDWEQSIGKVISP 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 531 E---------SLTSRQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDslsdssqQLQDSLRKKDDRIEELEEALres 601
Cdd:pfam12128 558 EllhrtdldpEVWDGSVGGELNLYGVKLDLKRIDVPEWAASEEELRERLD-------KAEEALQSAREKQAAAEEQL--- 627
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 602 VQITAEREMVLAQEESART---NAEKQVEELLMAME----KVKQELESMKAKLSSTQQSLAEKETHLTN----LRAERRK 670
Cdd:pfam12128 628 VQANGELEKASREETFARTalkNARLDLRRLFDEKQsekdKKNKALAERKDSANERLNSLEAQLKQLDKkhqaWLEEQKE 707
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1720416788 671 HLEEVLEMKQEALLAAISEKDANIALLElssskkktqEEVAALKREKDRLVQQLKQQTQNRMK 733
Cdd:pfam12128 708 QKREARTEKQAYWQVVEGALDAQLALLK---------AAIAARRSGAKAELKALETWYKRDLA 761
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
256-508 |
2.85e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 53.61 E-value: 2.85e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 256 ESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQL 335
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 336 RDKEKQmssLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDerekQEEIDTYKKDLKDLREKVSLLQGD 415
Cdd:COG4942 100 EAQKEE---LAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPAR----REQAEELRADLAELAALRAELEAE 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 416 LSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKkaheatlearaspEMSDRIQQLEREISRY 495
Cdd:COG4942 173 RAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAE-------------ELEALIARLEAEAAAA 239
|
250
....*....|...
gi 1720416788 496 KDESSKAQTEVDR 508
Cdd:COG4942 240 AERTPAAGFAALK 252
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
214-725 |
6.57e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 53.14 E-value: 6.57e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 214 NKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETM---LNKKT 290
Cdd:PRK03918 165 KNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELkeeIEELE 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 291 KQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEqLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEAL 370
Cdd:PRK03918 245 KELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKE-LKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEI 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 371 ADKERTIERLKEQRDRDErEKQEEIDTYKKDLKDLREKVSLLQgDLSEKEASLLDIKEHASSLASSGLKKdsRLKTLEIA 450
Cdd:PRK03918 324 NGIEERIKELEEKEERLE-ELKKKLKELEKRLEELEERHELYE-EAKAKKEELERLKKRLTGLTPEKLEK--ELEELEKA 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 451 LEQKKEECLKMES----------QLKKAHEATLEARASPEMSDRIQQLERE---ISRYKDESSKAQTEVDRLLEILKEVE 517
Cdd:PRK03918 400 KEEIEEEISKITArigelkkeikELKKAIEELKKAKGKCPVCGRELTEEHRkelLEEYTAELKRIEKELKEIEEKERKLR 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 518 NEKNDKDKKIAELESLTS-RQVKDQNKKVANLKHKEQVEK-KKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELE 595
Cdd:PRK03918 480 KELRELEKVLKKESELIKlKELAEQLKELEEKLKKYNLEElEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLA 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 596 EALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEK----------VKQELESMKAKLSSTQQSLAEKETHLTNLR 665
Cdd:PRK03918 560 ELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPfyneylelkdAEKELEREEKELKKLEEELDKAFEELAETE 639
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1720416788 666 A---ERRKHLEEVLEMKQEALLAAISEKdaniaLLELSSSKKKTQEEVAALKREKDRLVQQLK 725
Cdd:PRK03918 640 KrleELRKELEELEKKYSEEEYEELREE-----YLELSRELAGLRAELEELEKRREEIKKTLE 697
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
484-712 |
6.72e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.46 E-value: 6.72e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 484 RIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELEsltsRQVKDQNKKVANLKHKEQVEKKKSAQML 563
Cdd:COG4942 28 ELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALE----QELAALEAELAELEKEIAELRAELEAQK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 564 EEARRREDSLSDSSQQlqdslrkkdDRIEELEEAlrESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESM 643
Cdd:COG4942 104 EELAELLRALYRLGRQ---------PPLALLLSP--EDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAE 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1720416788 644 KAKLSSTQQSLAEKETHLTNLRAERRKHLEEvLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAA 712
Cdd:COG4942 173 RAELEALLAELEEERAALEALKAERQKLLAR-LEKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
312-528 |
6.90e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.46 E-value: 6.90e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 312 DMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREK 391
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 392 QEEIDTYKKDLKDL-------REKVSLLQGDLSEKEASLLDIKEHASSLAS--SGLKKD-SRLKTLEIALEQKKEECLKM 461
Cdd:COG4942 100 EAQKEELAELLRALyrlgrqpPLALLLSPEDFLDAVRRLQYLKYLAPARREqaEELRADlAELAALRAELEAERAELEAL 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1720416788 462 ESQLKKAHEATLEARAspEMSDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIA 528
Cdd:COG4942 180 LAELEEERAALEALKA--ERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTP 244
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
41-726 |
1.03e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.76 E-value: 1.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 41 ENFQRLHAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLSAKATEEDHERtrRLAEAEMHVH 120
Cdd:TIGR02169 304 ASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRA--ELEEVDKEFA 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 121 HLESLLEQKEKENNMLREEM--HRRFENAPDSAKTKALQTVIEMKdSKISSMERGLRDLEEEIQMLKSNGALSSEEREEE 198
Cdd:TIGR02169 382 ETRDELKDYREKLEKLKREIneLKRELDRLQEELQRLSEELADLN-AAIAGIEAKINELEEEKEDKALEIKKQEWKLEQL 460
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 199 MKQMEVYRSHSKFMKNKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTA-----------KEQRAAI 267
Cdd:TIGR02169 461 AADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGvhgtvaqlgsvGERYATA 540
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 268 LQ-------------TEVDALRLRLEEKETMLNKKT----KQIQDMAEEKG--TQAGEIHDLKDMLDVKERKVNVL---- 324
Cdd:TIGR02169 541 IEvaagnrlnnvvveDDAVAKEAIELLKRRKAGRATflplNKMRDERRDLSilSEDGVIGFAVDLVEFDPKYEPAFkyvf 620
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 325 -----------------QKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRD 387
Cdd:TIGR02169 621 gdtlvvedieaarrlmgKYRMVTLEGELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRI 700
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 388 ER---EKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQ 464
Cdd:TIGR02169 701 ENrldELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEA 780
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 465 LkkaheATLEARASPEmsdRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELEsltsRQVKDQNKK 544
Cdd:TIGR02169 781 L-----NDLEARLSHS---RIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQ----EQRIDLKEQ 848
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 545 VANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMvlaqeesartnAEK 624
Cdd:TIGR02169 849 IKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEK-----------KRK 917
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 625 QVEELLMAMEKVKQELESMKAKLSSTQQSLAEkETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKK 704
Cdd:TIGR02169 918 RLSELKAKLEALEEELSEIEDPKGEDEEIPEE-ELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRA 996
|
730 740
....*....|....*....|..
gi 1720416788 705 KTQEEVAALKREKDRLVQQLKQ 726
Cdd:TIGR02169 997 KLEEERKAILERIEEYEKKKRE 1018
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
26-677 |
1.27e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 52.35 E-value: 1.27e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 26 SSSRTGEPCVAELTEENFQRLHAE-HERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEmlqskglSAKATEE 104
Cdd:PRK02224 172 SDARLGVERVLSDQRGSLDQLKAQiEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRD-------EADEVLE 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 105 DHERTR-RLAEAEMHVHHLESLLEQKEKENNMLREEmhrrfenapdsaktkalqtviemkdskISSMERGLRDLEEEIQM 183
Cdd:PRK02224 245 EHEERReELETLEAEIEDLRETIAETEREREELAEE---------------------------VRDLRERLEELEEERDD 297
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 184 LKSNGALSSEEREeemkqmevyrshskfmknKIGQVKQELSRKDTEllaLQTKLETLTNQFSDSKQHIEVLKESLTAKEQ 263
Cdd:PRK02224 298 LLAEAGLDDADAE------------------AVEARREELEDRDEE---LRDRLEECRVAAQAHNEEAESLREDADDLEE 356
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 264 RAAILQTEVDALRlrleeketmlnkktKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMS 343
Cdd:PRK02224 357 RAEELREEAAELE--------------SELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERD 422
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 344 SLKERVKSLQAdttntdtALTTLEEALADKERTIERLKEQRDRDEREKQEEIDTykkdLKDLREKVSLLqgdlsekEASL 423
Cdd:PRK02224 423 ELREREAELEA-------TLRTARERVEEAEALLEAGKCPECGQPVEGSPHVET----IEEDRERVEEL-------EAEL 484
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 424 LDIKEHASSLassglkkDSRLKTLEIALE-----QKKEECLKMESQLKKAHEATLEAR--ASPEMSDRIQQLEREISRYK 496
Cdd:PRK02224 485 EDLEEEVEEV-------EERLERAEDLVEaedriERLEERREDLEELIAERRETIEEKreRAEELRERAAELEAEAEEKR 557
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 497 DESSKAQTEVDRLLEILKEVENEKNDKDKKIAELESLTSRQVKDQNKKVANLKHKEQVEKKksAQMLEEARRREDSLSDS 576
Cdd:PRK02224 558 EAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEIERLREKREAL--AELNDERRERLAEKRER 635
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 577 SQQLQDSLrkKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQ---VEELLMAMEKVKQELESMKAK---LSST 650
Cdd:PRK02224 636 KRELEAEF--DEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEigaVENELEELEELRERREALENRveaLEAL 713
|
650 660
....*....|....*....|....*..
gi 1720416788 651 QQSLAEKETHLTNLRAERRKHLEEVLE 677
Cdd:PRK02224 714 YDEAEELESMYGDLRAELRQRNVETLE 740
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
310-705 |
1.53e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.98 E-value: 1.53e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 310 LKDMLDVKERKVNVLQKKIE------NLQEQLRDKEKQMS--SLKERVKSLQADTTNTDTALTTLEEALADKERTIERLK 381
Cdd:TIGR02168 191 LEDILNELERQLKSLERQAEkaerykELKAELRELELALLvlRLEELREELEELQEELKEAEEELEELTAELQELEEKLE 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 382 EQRDRDeREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIALEQKKEEclkm 461
Cdd:TIGR02168 271 ELRLEV-SELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEK---- 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 462 ESQLKKAHEAtlearaspeMSDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELESltsrQVKDQ 541
Cdd:TIGR02168 346 LEELKEELES---------LEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEA----RLERL 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 542 NKKVANLKH-KEQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESART 620
Cdd:TIGR02168 413 EDRRERLQQeIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLD 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 621 NAEKQVEELLMAMEKVKQELESmKAKLSSTQQSLAEkethLTNLRAERRKHLEEVLemkqEALLAAISEKDANIALLELS 700
Cdd:TIGR02168 493 SLERLQENLEGFSEGVKALLKN-QSGLSGILGVLSE----LISVDEGYEAAIEAAL----GGRLQAVVVENLNAAKKAIA 563
|
....*
gi 1720416788 701 SSKKK 705
Cdd:TIGR02168 564 FLKQN 568
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
44-658 |
3.06e-06 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 51.20 E-value: 3.06e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 44 QRLHAEHERQAKELFLLRKTLEEMELRIETQK-QTLNARDESIKKL-LEMLQSKGLSAKATEEDHERTRRLAEAEMHVHH 121
Cdd:TIGR00606 464 QQLEGSSDRILELDQELRKAERELSKAEKNSLtETLKKEVKSLQNEkADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKD 543
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 122 LESLLEQKEKENNMLREEMhrrFENAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSSEEREEEMKQ 201
Cdd:TIGR00606 544 KMDKDEQIRKIKSRHSDEL---TSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQ 620
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 202 MEVYRSH------SKFMKNKIGQVKQEL--SRKDTELLALQTKL-----ETLTNQFSDSKQHIEVLKESLTAKEQRAAIL 268
Cdd:TIGR00606 621 LSSYEDKlfdvcgSQDEESDLERLKEEIekSSKQRAMLAGATAVysqfiTQLTDENQSCCPVCQRVFQTEAELQEFISDL 700
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 269 QTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKER 348
Cdd:TIGR00606 701 QSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPE 780
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 349 VKSLQADTTNTDTALTTLEEaLADKERTIERLKEQRD------------RDEREKQEEIDTYKKDLKDLREKVSLLQGDL 416
Cdd:TIGR00606 781 EESAKVCLTDVTIMERFQME-LKDVERKIAQQAAKLQgsdldrtvqqvnQEKQEKQHELDTVVSKIELNRKLIQDQQEQI 859
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 417 SEKEASLLDIKEHASSLASSGlkkdSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASPEmsDRIQQLEREISRYK 496
Cdd:TIGR00606 860 QHLKSKTNELKSEKLQIGTNL----QRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLE--KDQQEKEELISSKE 933
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 497 DESSKAQTEVDRLLEILKEVENEKNDKDKKIAELESLTSRQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSDS 576
Cdd:TIGR00606 934 TSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQ 1013
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 577 SQQLQDSL--RKKDDRIEELEEALRE------SVQITAEREMVLAQEESARTNAEKQVeELLMAMEKVKQELESMKAKLS 648
Cdd:TIGR00606 1014 ERWLQDNLtlRKRENELKEVEEELKQhlkemgQMQVLQMKQEHQKLEENIDLIKRNHV-LALGRQKGYEKEIKHFKKELR 1092
|
650
....*....|
gi 1720416788 649 STQQSLAEKE 658
Cdd:TIGR00606 1093 EPQFRDAEEK 1102
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
37-720 |
3.52e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.83 E-value: 3.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 37 ELTEENFQRLHAEHERQAKELFLLRKTLEEMELRIET----------QKQTLNARDESIKKLLEMLQSKglSAKATEEDH 106
Cdd:TIGR02168 347 EELKEELESLEAELEELEAELEELESRLEELEEQLETlrskvaqlelQIASLNNEIERLEARLERLEDR--RERLQQEIE 424
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 107 ERTRRLAEAEMHVHHLESLLEQKEKENNMLREEMHRrfenapdsAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKs 186
Cdd:TIGR02168 425 ELLKKLEEAELKELQAELEELEEELEELQEELERLE--------EALEELREELEEAEQALDAAERELAQLQARLDSLE- 495
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 187 ngalSSEEREEEMKQMEVYRSHSKFMKNKIGQVKQELSRKDTEL-LALQTKLET-----LTNQFSDSKQHIEVLKESlta 260
Cdd:TIGR02168 496 ----RLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYeAAIEAALGGrlqavVVENLNAAKKAIAFLKQN--- 568
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 261 KEQRAAILqtEVDALRLRLEEKETMlnkktkqiqdmaEEKGTQAGEIHDLKDMLDVKERKVNVLQ------KKIENLQEQ 334
Cdd:TIGR02168 569 ELGRVTFL--PLDSIKGTEIQGNDR------------EILKNIEGFLGVAKDLVKFDPKLRKALSyllggvLVVDDLDNA 634
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 335 LRDKEKqmSSLKERVKSLQAD-----------TTNTDTALTTLEEALADKERTIERLKEQrdrdEREKQEEIDTYKKDLK 403
Cdd:TIGR02168 635 LELAKK--LRPGYRIVTLDGDlvrpggvitggSAKTNSSILERRREIEELEEKIEELEEK----IAELEKALAELRKELE 708
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 404 DLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARAspemsd 483
Cdd:TIGR02168 709 ELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEA------ 782
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 484 RIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELEsltsrqvkdqnkkvanlkhKEQVEKKKSAQML 563
Cdd:TIGR02168 783 EIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLE-------------------RRIAATERRLEDL 843
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 564 EEARRRedsLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEEllmaMEKVKQELEsm 643
Cdd:TIGR02168 844 EEQIEE---LSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRE----LESKRSELR-- 914
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1720416788 644 kAKLSSTQQSLAEKETHLTNLRAeRRKHLEEVLEMKQEALLAAISEKDANIALLElssskKKTQEEVAALKREKDRL 720
Cdd:TIGR02168 915 -RELEELREKLAQLELRLEGLEV-RIDNLQERLSEEYSLTLEEAEALENKIEDDE-----EEARRRLKRLENKIKEL 984
|
|
| RBD-FIP |
pfam09457 |
FIP domain; The FIP domain is the Rab11-binding domain (RBD) at the C-terminus of a family of ... |
820-860 |
4.24e-06 |
|
FIP domain; The FIP domain is the Rab11-binding domain (RBD) at the C-terminus of a family of Rab11-interacting proteins (FIPs). The Rab proteins constitute the largest family of small GTPases (>60 members in mammals). Among them Rab11 is a well characterized regulator of endocytic and recycling pathways. Rab11 associates with a broad range of post-Golgi organelles, including recycling endosomes.
Pssm-ID: 462805 [Multi-domain] Cd Length: 41 Bit Score: 44.25 E-value: 4.24e-06
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 1720416788 820 TQEQLQNELEKVEGDNAELQEFANTILQQIADHCPDILEQV 860
Cdd:pfam09457 1 SRDELQDALQKQEEENRRLEDYIDNILLRIMEHNPSILEVP 41
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
221-418 |
7.28e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.91 E-value: 7.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 221 QELSRKDTELLALQTKLETLtnqfsdskQHIEVLKESLTAKEQRAAILQTEVDALRLrlEEKETMLNKKTKQIQDMAEEK 300
Cdd:COG4913 235 DDLERAHEALEDAREQIELL--------EPIRELAERYAAARERLAELEYLRAALRL--WFAQRRLELLEAELEELRAEL 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 301 GTQAGEIHDLKDMLDVKERKVNVLQ--------KKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALAD 372
Cdd:COG4913 305 ARLEAELERLEARLDALREELDELEaqirgnggDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAA 384
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1720416788 373 KERTIERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSE 418
Cdd:COG4913 385 LRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIAS 430
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
35-734 |
7.40e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 49.97 E-value: 7.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 35 VAELTEENFQRLHAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLSAKATEEDHERTRRLAE 114
Cdd:TIGR00618 181 LALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQ 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 115 AEMHVHHLESLLEQKEKENNMLREEMHRRFENAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSSEE 194
Cdd:TIGR00618 261 LLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSI 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 195 REEEMKQMEVYRSHSKFMK--NKIGQVKQELSRKDTE---LLALQTKLETLTNQFSDSKQhievLKESLTAKEQRAAILQ 269
Cdd:TIGR00618 341 EEQRRLLQTLHSQEIHIRDahEVATSIREISCQQHTLtqhIHTLQQQKTTLTQKLQSLCK----ELDILQREQATIDTRT 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 270 TEVDALRLRL--EEKETMLNKKTKQIQDMAEEKGTQ---AGEIHDLKDMLDVKERKVNVLQKkiENLQEQLRDKEKQMSS 344
Cdd:TIGR00618 417 SAFRDLQGQLahAKKQQELQQRYAELCAAAITCTAQcekLEKIHLQESAQSLKEREQQLQTK--EQIHLQETRKKAVVLA 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 345 LKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEIDTY------KKDLKDLREKVSLLQGDLSE 418
Cdd:TIGR00618 495 RLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYhqltseRKQRASLKEQMQEIQQSFSI 574
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 419 KEASLLDIKEHASSLASsgLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLearaspemsdriQQLEREISRYKDE 498
Cdd:TIGR00618 575 LTQCDNRSKEDIPNLQN--ITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDL------------QDVRLHLQQCSQE 640
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 499 SSKAQTEVDRLLEILKEVENEKNDKDKKIAELESLTSRQVKDQnkKVANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQ 578
Cdd:TIGR00618 641 LALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQ--KMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDR 718
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 579 QLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKE 658
Cdd:TIGR00618 719 EFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDT 798
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 659 THLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSK----KKTQEEVAALKREKDRLVQQLKQQTQNRMKL 734
Cdd:TIGR00618 799 HLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATlgeiTHQLLKYEECSKQLAQLTQEQAKIIQLSDKL 878
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
213-437 |
1.55e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 48.29 E-value: 1.55e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 213 KNKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEeketmlnkktKQ 292
Cdd:COG3883 22 QKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELG----------ER 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 293 IQDMAEEKGT--------QAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALT 364
Cdd:COG3883 92 ARALYRSGGSvsyldvllGSESFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKA 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1720416788 365 TLEEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSG 437
Cdd:COG3883 172 ELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 244
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
120-654 |
1.71e-05 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 48.89 E-value: 1.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 120 HHLESLLEQKEKENNMLREEMHR--RFENAPDSA-----------KTKALQTVIEMKD----------SKISSMERGLRD 176
Cdd:TIGR01612 1129 HHIKALEEIKKKSENYIDEIKAQinDLEDVADKAisnddpeeiekKIENIVTKIDKKKniydeikkllNEIAEIEKDKTS 1208
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 177 LEE----EIQMLKSNGALSSEEREEEMKQME-VYRSHSKFMKN--KIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQ 249
Cdd:TIGR01612 1209 LEEvkgiNLSYGKNLGKLFLEKIDEEKKKSEhMIKAMEAYIEDldEIKEKSPEIENEMGIEMDIKAEMETFNISHDDDKD 1288
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 250 HievlkeSLTAKEQRAAILQTEVDALRLRLE-EKETMLNKKTKQIQDMAEEKGTQAGEIH----------------DLKD 312
Cdd:TIGR01612 1289 H------HIISKKHDENISDIREKSLKIIEDfSEESDINDIKKELQKNLLDAQKHNSDINlylneianiynilklnKIKK 1362
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 313 MLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKslqadttnTDTALTTLEEALADKE--RTIERLKEQRDRDERE 390
Cdd:TIGR01612 1363 IIDEVKEYTKEIEENNKNIKDELDKSEKLIKKIKDDIN--------LEECKSKIESTLDDKDidECIKKIKELKNHILSE 1434
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 391 kQEEIDTYKKDLKDLREKVSLLQGDL-------------------SEKEASLLDIKEHASSLASSGLKKDSRLKTLE--- 448
Cdd:TIGR01612 1435 -ESNIDTYFKNADENNENVLLLFKNIemadnksqhilkikkdnatNDHDFNINELKEHIDKSKGCKDEADKNAKAIEknk 1513
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 449 IALEQKKEECLKMesqLKKAHEATLEARASPEMSDRiQQLEREISRYKDESS-KAQTEVDRLLEILKE---VENE--KND 522
Cdd:TIGR01612 1514 ELFEQYKKDVTEL---LNKYSALAIKNKFAKTKKDS-EIIIKEIKDAHKKFIlEAEKSEQKIKEIKKEkfrIEDDaaKND 1589
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 523 KDKKIA-----ELESLTSRQVKDQN-KKVAN--LKHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEEL 594
Cdd:TIGR01612 1590 KSNKAAidiqlSLENFENKFLKISDiKKKINdcLKETESIEKKISSFSIDSQDTELKENGDNLNSLQEFLESLKDQKKNI 1669
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1720416788 595 EEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKV-KQELESMKAKLSSTQQSL 654
Cdd:TIGR01612 1670 EDKKKELDELDSEIEKIEIDVDQHKKNYEIGIIEKIKEIAIAnKEEIESIKELIEPTIENL 1730
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
104-644 |
1.72e-05 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 48.74 E-value: 1.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 104 EDHERTRRLAEAEmhVHHLESLLEQKEKENNMLREEMHRrfenapdsakTKALQTVIEMKDSKISSMERGLRDLEEEIQM 183
Cdd:PRK01156 207 ADDEKSHSITLKE--IERLSIEYNNAMDDYNNLKSALNE----------LSSLEDMKNRYESEIKTAESDLSMELEKNNY 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 184 LKSngalsSEEREEEMKQMEVYRSHSKF-----MKNKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKEsl 258
Cdd:PRK01156 275 YKE-----LEERHMKIINDPVYKNRNYIndyfkYKNDIENKKQILSNIDAEINKYHAIIKKLSVLQKDYNDYIKKKSR-- 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 259 takeqraailQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKD----MLDVKERKVNVLQKKIENLQEQ 334
Cdd:PRK01156 348 ----------YDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAfiseILKIQEIDPDAIKKELNEINVK 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 335 LRDKEKQMSSLKERVKSLQADTTNTDTALTTLEE-------ALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLRE 407
Cdd:PRK01156 418 LQDISSKVSSLNQRIRALRENLDELSRNMEMLNGqsvcpvcGTTLGEEKSNHIINHYNEKKSRLEEKIREIEIEVKDIDE 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 408 KVSLLQgdlseKEASLLDIKEHASSLASSGLKKDSR--LKTLEIALEQKKEECLKME---SQLKKAHEATLEARASPEMS 482
Cdd:PRK01156 498 KIVDLK-----KRKEYLESEEINKSINEYNKIESARadLEDIKIKINELKDKHDKYEeikNRYKSLKLEDLDSKRTSWLN 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 483 DRIQ----QLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELEsltsrqvkdQNKKVANLKHKEQVEKKK 558
Cdd:PRK01156 573 ALAVisliDIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIE---------NEANNLNNKYNEIQENKI 643
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 559 SAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQ 638
Cdd:PRK01156 644 LIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINE 723
|
....*.
gi 1720416788 639 ELESMK 644
Cdd:PRK01156 724 TLESMK 729
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
163-524 |
1.88e-05 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 48.50 E-value: 1.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 163 KDSKISSMERGLRDLEEEIQMLKS--NGAL-----SSEEREEEMKQMEvYRSHSKFMKNKIGQVKQELSRKDTELLALQT 235
Cdd:PTZ00108 997 KEYLLGKLERELARLSNKVRFIKHviNGELvitnaKKKDLVKELKKLG-YVRFKDIIKKKSEKITAEEEEGAEEDDEADD 1075
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 236 KLETLTNQ-------------FSDSKQHIEVLKESLTAKEQRAAILQ---------TEVDALRLRLEEKETMLNKKTKQI 293
Cdd:PTZ00108 1076 EDDEEELGaavsydyllsmpiWSLTKEKVEKLNAELEKKEKELEKLKnttpkdmwlEDLDKFEEALEEQEEVEEKEIAKE 1155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 294 QDMAEEKGTQAGEIHDLKDmLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADK 373
Cdd:PTZ00108 1156 QRLKSKTKGKASKLRKPKL-KKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTK 1234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 374 ERTIERLKEQRDRDEREKQEEI------DTYKKDLKDLREKVSLLQGDLSEKEAS--LLDIKEHASSLASSGLKKD-SRL 444
Cdd:PTZ00108 1235 PKKSSVKRLKSKKNNSSKSSEDndefssDDLSKEGKPKNAPKRVSAVQYSPPPPSkrPDGESNGGSKPSSPTKKKVkKRL 1314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 445 KTLEIALEQKKEECLKmESQLKKAHEATLEARASPEmsdriQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKD 524
Cdd:PTZ00108 1315 EGSLAALKKKKKSEKK-TARKKKSKTRVKQASASQS-----SRLLRRPRKKKSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
318-600 |
2.20e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.37 E-value: 2.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 318 ERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEAL--ADKERTIERLKEQRDRderekqeeI 395
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIdvASAEREIAELEAELER--------L 680
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 396 DTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLassglkkDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEA 475
Cdd:COG4913 681 DASSDDLAALEEQLEELEAELEELEEELDELKGEIGRL-------EKELEQAEEELDELQDRLEAAEDLARLELRALLEE 753
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 476 RASPEMSDRI-----QQLEREISRYKDESSKAQTEVDRLL-EILKEVENEKNDKDKKIAELESLtsRQVKDQNKKVANLK 549
Cdd:COG4913 754 RFAAALGDAVerelrENLEERIDALRARLNRAEEELERAMrAFNREWPAETADLDADLESLPEY--LALLDRLEEDGLPE 831
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1720416788 550 HKEQVEKKKSAQMleearrrEDSLSDSSQQLQDSLRKKDDRIEELEEALRE 600
Cdd:COG4913 832 YEERFKELLNENS-------IEFVADLLSKLRRAIREIKERIDPLNDSLKR 875
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
232-409 |
2.74e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.99 E-value: 2.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 232 ALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQ--TEVDALRLRLEEKETMLNKKTKQIQDMAEEKGtqagEIHD 309
Cdd:COG4913 614 ALEAELAELEEELAEAEERLEALEAELDALQERREALQrlAEYSWDEIDVASAEREIAELEAELERLDASSD----DLAA 689
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 310 LKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDER 389
Cdd:COG4913 690 LEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRE 769
|
170 180
....*....|....*....|
gi 1720416788 390 EKQEEIDTYKKDLKDLREKV 409
Cdd:COG4913 770 NLEERIDALRARLNRAEEEL 789
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
280-723 |
3.04e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 47.79 E-value: 3.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 280 EEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNT 359
Cdd:pfam05483 229 EEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRS 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 360 DTALTTLEEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLK 439
Cdd:pfam05483 309 MSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQK 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 440 KDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASPEMSDRIQQLEREISRYKDESSKAQTEVDRLLEILK----- 514
Cdd:pfam05483 389 KSSELEEMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKtseeh 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 515 ----------EVENEKND-------------KDKKIAELESLTSRQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRRED 571
Cdd:pfam05483 469 ylkevedlktELEKEKLKnieltahcdklllENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRD 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 572 SLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQ 651
Cdd:pfam05483 549 ELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAEN 628
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1720416788 652 QSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQ 723
Cdd:pfam05483 629 KQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDKKISEEKLLEEVEKAKAIADEAVKLQKEIDKRCQH 700
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
473-680 |
3.72e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.60 E-value: 3.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 473 LEARASPEMSDRIQQLEREISRYKDESSKAQTEVDRLLEIlKEVENEKNDKDKKIAELESLTSRQVKDQNKKVANLKHKE 552
Cdd:COG4913 218 LEEPDTFEAADALVEHFDDLERAHEALEDAREQIELLEPI-RELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 553 ----QVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKD-DRIEELEEALRESVQITAEREMVLAQ-EESART---NAE 623
Cdd:COG4913 297 leelRAELARLEAELERLEARLDALREELDELEAQIRGNGgDRLEQLEREIERLERELEERERRRARlEALLAAlglPLP 376
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1720416788 624 KQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQ 680
Cdd:COG4913 377 ASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLER 433
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
327-596 |
3.89e-05 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 47.73 E-value: 3.89e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 327 KIENLQEQLRDKEKQMSSLKER-VKSLQADTTNTDTALTTLEEALADKER-TIERLKEQRDRDEREKQEEIDTYKKdlKD 404
Cdd:PTZ00108 1103 KVEKLNAELEKKEKELEKLKNTtPKDMWLEDLDKFEEALEEQEEVEEKEIaKEQRLKSKTKGKASKLRKPKLKKKE--KK 1180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 405 LREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKK---DSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASPEM 481
Cdd:PTZ00108 1181 KKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKksnSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEF 1260
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 482 SDRIQQLEREISRY-------KDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELESLTSRQVKDQNKKVANLKHKEQV 554
Cdd:PTZ00108 1261 SSDDLSKEGKPKNApkrvsavQYSPPPPSKRPDGESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTR 1340
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 1720416788 555 EKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEE 596
Cdd:PTZ00108 1341 VKQASASQSSRLLRRPRKKKSDSSSEDDDDSEVDDSEDEDDE 1382
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
7-421 |
4.88e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 47.34 E-value: 4.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 7 ALQDELRIQRDLNQLFQQDSSSRTGEpcvAELTEENFQRLHAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIK 86
Cdd:PRK02224 276 ELAEEVRDLRERLEELEEERDDLLAE---AGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDAD 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 87 KLLEmlQSKGLSAKATEEDHErtrrLAEAEMHVHHLESLLEQKEKENNMLREemhrRFENAPD-----SAKTKALQTVIE 161
Cdd:PRK02224 353 DLEE--RAEELREEAAELESE----LEEAREAVEDRREEIEELEEEIEELRE----RFGDAPVdlgnaEDFLEELREERD 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 162 MKDSKISSMERGLRDLEEEI----------------QMLK-SNGALSSEEREEEMKQMEVYRSHskfMKNKIGQVKQELS 224
Cdd:PRK02224 423 ELREREAELEATLRTARERVeeaealleagkcpecgQPVEgSPHVETIEEDRERVEELEAELED---LEEEVEEVEERLE 499
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 225 RKdTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQA 304
Cdd:PRK02224 500 RA-EDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELN 578
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 305 GEIHDLKDMLDVKERKVNV-------------LQKKIENLQEQLRDKEKQMSSLKERVKSLQADT-----TNTDTALTTL 366
Cdd:PRK02224 579 SKLAELKERIESLERIRTLlaaiadaedeierLREKREALAELNDERRERLAEKRERKRELEAEFdeariEEAREDKERA 658
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1720416788 367 EEALADKERTIERLKEQRDRDE------REKQEEIDTYKKDLKDLREKVSLLQGDLSEKEA 421
Cdd:PRK02224 659 EEYLEQVEEKLDELREERDDLQaeigavENELEELEELRERREALENRVEALEALYDEAEE 719
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
222-410 |
4.93e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 45.69 E-value: 4.93e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 222 ELSRKDTELLALQTKLETLtnqfsdsKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLnkktKQIQDMAEEKG 301
Cdd:COG1579 11 DLQELDSELDRLEHRLKEL-------PAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEI----EEVEARIKKYE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 302 TQAGEIHDLKDMldvkerkvNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQAdttntdtALTTLEEALADKERTIERLK 381
Cdd:COG1579 80 EQLGNVRNNKEY--------EALQKEIESLKRRISDLEDEILELMERIEELEE-------ELAELEAELAELEAELEEKK 144
|
170 180
....*....|....*....|....*....
gi 1720416788 382 EQRDRDEREKQEEIDTYKKDLKDLREKVS 410
Cdd:COG1579 145 AELDEELAELEAELEELEAEREELAAKIP 173
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
483-712 |
4.94e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 46.75 E-value: 4.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 483 DRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELEsltsRQVKDQNKKVANLKHKEQVEKKKSAQM 562
Cdd:COG3883 16 PQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQ----AEIDKLQAEIAEAEAEIEERREELGER 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 563 LEEARRREDSLSD-----SSQQLQDSLrkkdDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELlmamEKVK 637
Cdd:COG3883 92 ARALYRSGGSVSYldvllGSESFSDFL----DRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAEL----EALK 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1720416788 638 QELESMKAKLsstQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAA 712
Cdd:COG3883 164 AELEAAKAEL---EAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAA 235
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
221-353 |
5.60e-05 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 46.11 E-value: 5.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 221 QELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEK 300
Cdd:PRK09039 46 REISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQEL 125
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1720416788 301 GTQAGEIHDlkdmldvKERKVNVLQKKIENLQEQL------------RDKEKQM----------SSLKERVKSLQ 353
Cdd:PRK09039 126 DSEKQVSAR-------ALAQVELLNQQIAALRRQLaaleaaldasekRDRESQAkiadlgrrlnVALAQRVQELN 193
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
341-583 |
6.08e-05 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 46.55 E-value: 6.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 341 QMSSL-KERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEK 419
Cdd:PHA02562 167 EMDKLnKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 420 EASLLDIKEHASSLASSGLKKDSRLKTL--EIALEQKKEECLKMESQLKKAHEATLEARAS-PEMSDRIQQLEREISRYK 496
Cdd:PHA02562 247 VMDIEDPSAALNKLNTAAAKIKSKIEQFqkVIKMYEKGGVCPTCTQQISEGPDRITKIKDKlKELQHSLEKLDTAIDELE 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 497 DESSKAQTEVDRLLEILKEVENEK------NDKDKKI-AELESLTSrQVKDQNKKVANLKHKEQVEKKKSAQMLEEarrr 569
Cdd:PHA02562 327 EIMDEFNEQSKKLLELKNKISTNKqslitlVDKAKKVkAAIEELQA-EFVDNAEELAKLQDELDKIVKTKSELVKE---- 401
|
250
....*....|....
gi 1720416788 570 EDSLSDSSQQLQDS 583
Cdd:PHA02562 402 KYHRGIVTDLLKDS 415
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
212-540 |
6.86e-05 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 46.05 E-value: 6.86e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 212 MKNKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTK 291
Cdd:COG4372 43 LQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQK 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 292 QIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERvkSLQADTTNTDTALTTLEEALA 371
Cdd:COG4372 123 ERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEA--EAEQALDELLKEANRNAEKEE 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 372 DKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIAL 451
Cdd:COG4372 201 ELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAILVEKDTEEEELEI 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 452 EQKKEECLKMESQLKKAHEATLEARASPEMSDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELE 531
Cdd:COG4372 281 AALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAELADLLQLLLVGLLDNDVLELLS 360
|
....*....
gi 1720416788 532 SLTSRQVKD 540
Cdd:COG4372 361 KGAEAGVAD 369
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
369-606 |
8.07e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.91 E-value: 8.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 369 ALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLE 448
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 449 IALEQKKEECLKMESQL-KKAHEATLEARASPEmsdRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKI 527
Cdd:COG4942 97 AELEAQKEELAELLRALyRLGRQPPLALLLSPE---DFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAER 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1720416788 528 AELESLTSRQVKDQNKKvanlkhkeQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITA 606
Cdd:COG4942 174 AELEALLAELEEERAAL--------EALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTP 244
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
325-626 |
1.00e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 45.88 E-value: 1.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 325 QKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLK-EQRDRD-EREKQEEIDTYKKDL 402
Cdd:pfam17380 298 QERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRqEERKRElERIRQEEIAMEISRM 377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 403 KDLrEKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASPEMS 482
Cdd:pfam17380 378 REL-ERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQ 456
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 483 DRIQQLEReISRYKDESSKAQTEVDRLLEILKEVENEKndkdKKIAELESLTSRQVKDQNKKVANLKHKEQVEKKKSaqM 562
Cdd:pfam17380 457 ERQQQVER-LRQQEEERKRKKLELEKEKRDRKRAEEQR----RKILEKELEERKQAMIEEERKRKLLEKEMEERQKA--I 529
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1720416788 563 LEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQV 626
Cdd:pfam17380 530 YEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLEAMEREREMMRQIVESEKARAEYEA 593
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
210-462 |
1.13e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 45.78 E-value: 1.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 210 KFMKNKIGQVKQELSRKDTELLALQTKLETLTNqfsdskqHIEVLKESltaKEQRAAILQTEVDALRLRLEEKETMLNKK 289
Cdd:PHA02562 170 KLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNK-------NIEEQRKK---NGENIARKQNKYDELVEEAKTIKAEIEEL 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 290 TKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQE---------QLRDKEKQMSSLKERVKSLQADttntd 360
Cdd:PHA02562 240 TDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKggvcptctqQISEGPDRITKIKDKLKELQHS----- 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 361 talttleealadkertIERLKEQRDrDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKK 440
Cdd:PHA02562 315 ----------------LEKLDTAID-ELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDN 377
|
250 260
....*....|....*....|....
gi 1720416788 441 DSRLKTLEIALEQKKEEC--LKME 462
Cdd:PHA02562 378 AEELAKLQDELDKIVKTKseLVKE 401
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
483-719 |
1.21e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.82 E-value: 1.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 483 DRIQQLEREISRYKDESSKAqtevdrllEILKEVENEKNDKDKKIA--ELESLTS--RQVKDQNKKVANLKHKEQVEKKK 558
Cdd:TIGR02168 193 DILNELERQLKSLERQAEKA--------ERYKELKAELRELELALLvlRLEELREelEELQEELKEAEEELEELTAELQE 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 559 SAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELE-------EALRESVQITAEREMVLAQEESARTNAEKQVEELLM 631
Cdd:TIGR02168 265 LEEKLEELRLEVSELEEEIEELQKELYALANEISRLEqqkqilrERLANLERQLEELEAQLEELESKLDELAEELAELEE 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 632 AMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVA 711
Cdd:TIGR02168 345 KLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIE 424
|
....*...
gi 1720416788 712 ALKREKDR 719
Cdd:TIGR02168 425 ELLKKLEE 432
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
367-540 |
1.32e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 45.62 E-value: 1.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 367 EEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEkeaslldikehasslassglkKDSRLKT 446
Cdd:COG2433 387 EKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEE---------------------KDERIER 445
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 447 LEIALEQKKEEclkMESQLKKAHEATLEARaspemsdRIQQLEREISRYKDESSKAQTEVDRLLEILKEVEnekndKDKK 526
Cdd:COG2433 446 LERELSEARSE---ERREIRKDREISRLDR-------EIERLERELEEERERIEELKRKLERLKELWKLEH-----SGEL 510
|
170
....*....|....*.
gi 1720416788 527 IA--ELESLTSRQVKD 540
Cdd:COG2433 511 VPvkVVEKFTKEAIRR 526
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
520-716 |
1.55e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 45.15 E-value: 1.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 520 KNDKDKKIAELESLTSRQVKDQNKKVANLKHKEQVEKKKsaqmlEEARRRedslsdssQQLQDSLRKKDDRIEELEEALR 599
Cdd:PRK12704 26 KKIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKE-----EIHKLR--------NEFEKELRERRNELQKLEKRLL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 600 EsvqitaeREMVLaqeesartnaEKQVEELlmamEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMK 679
Cdd:PRK12704 93 Q-------KEENL----------DRKLELL----EKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLT 151
|
170 180 190
....*....|....*....|....*....|....*..
gi 1720416788 680 QEallaaisekDANIALLElsSSKKKTQEEVAALKRE 716
Cdd:PRK12704 152 AE---------EAKEILLE--KVEEEARHEAAVLIKE 177
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
216-556 |
1.60e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 44.89 E-value: 1.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 216 IGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQD 295
Cdd:COG4372 26 IAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELES 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 296 MAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKEr 375
Cdd:COG4372 106 LQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEAEQA- 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 376 TIERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIALEQKK 455
Cdd:COG4372 185 LDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELE 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 456 EECLKMESQLKKAHEATLEARASPEMSDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELESLTS 535
Cdd:COG4372 265 LAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAELADLLQ 344
|
330 340
....*....|....*....|.
gi 1720416788 536 RQVKDQNKKVANLKHKEQVEK 556
Cdd:COG4372 345 LLLVGLLDNDVLELLSKGAEA 365
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
238-738 |
1.83e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 45.49 E-value: 1.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 238 ETLTNQFSDSKQHIEVLKeslTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQageIHDLKDMLDVK 317
Cdd:pfam15921 141 EDLRNQLQNTVHELEAAK---CLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKK---IYEHDSMSTMH 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 318 ERKVNVLQKKIenlqeqLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALadkertierLKEQRDRDErekqEEIDT 397
Cdd:pfam15921 215 FRSLGSAISKI------LRELDTEISYLKGRIFPVEDQLEALKSESQNKIELL---------LQQHQDRIE----QLISE 275
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 398 YKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMesqlkkaheatleara 477
Cdd:pfam15921 276 HEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRM---------------- 339
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 478 speMSDRIQQLEREISRYKDESSKAQTEVDRLLEilkEVENEKNDKDKKIAELESLTSRQV--KDQNKKVANLKHKEQVE 555
Cdd:pfam15921 340 ---YEDKIEELEKQLVLANSELTEARTERDQFSQ---ESGNLDDQLQKLLADLHKREKELSleKEQNKRLWDRDTGNSIT 413
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 556 KKKSAQMLE----EARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAeremvlaQEESARTNAEKQVEELL- 630
Cdd:pfam15921 414 IDHLRRELDdrnmEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTA-------QLESTKEMLRKVVEELTa 486
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 631 --MAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEAllaaisekdaniallelsSSKKKTQE 708
Cdd:pfam15921 487 kkMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEG------------------DHLRNVQT 548
|
490 500 510
....*....|....*....|....*....|...
gi 1720416788 709 EVAALK---REKDRLVQQLKQQTQNRMKLMADN 738
Cdd:pfam15921 549 ECEALKlqmAEKDKVIEILRQQIENMTQLVGQH 581
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
4-666 |
2.74e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 44.68 E-value: 2.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 4 TIQALQDELRIQRDLNQLFQQDSSsrtgepCVAELTEENFQRLHAEHERQakelfllrKTLEEMELRIETQKQTLNARDE 83
Cdd:COG5022 818 CIIKLQKTIKREKKLRETEEVEFS------LKAEVLIQKFGRSLKAKKRF--------SLLKKETIYLQSAQRVELAERQ 883
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 84 SIKKLLEMLQSKGLSAKATEEDhertrrlaeaemhvhhlESLLEQKEKENNMLREEMHRRfenapdSAKTKALQTVIEMK 163
Cdd:COG5022 884 LQELKIDVKSISSLKLVNLELE-----------------SEIIELKKSLSSDLIENLEFK------TELIARLKKLLNNI 940
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 164 DSKI-SSMERGLRDLEEEIQMLKSNGALSSEEREEEMKQMEVYRSHSKFMKNKIGQVKQELSRKDTELLALQTKLETL-- 240
Cdd:COG5022 941 DLEEgPSIEYVKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYGALQESTKQLke 1020
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 241 TNQFSDSKQHIEVLKESLTAKEQRaailQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKgtqageihDLKDMLDVKERK 320
Cdd:COG5022 1021 LPVEVAELQSASKIISSESTELSI----LKPLQKLKGLLLLENNQLQARYKALKLRRENS--------LLDDKQLYQLES 1088
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 321 VNVLQKKIENLQEQLRDKEkqmSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDE-------REKQE 393
Cdd:COG5022 1089 TENLLKTINVKDLEVTNRN---LVKPANVLQFIVAQMIKLNLLQEISKFLSQLVNTLEPVFQKLSVLQleldglfWEANL 1165
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 394 EIDTYKKDLKDLREK----VSLLQGDLSEKEASLLDIKEHASSLAS---SGLKKDSRLKTL--EIALEQKKEECLKMESQ 464
Cdd:COG5022 1166 EALPSPPPFAALSEKrlyqSALYDEKSKLSSSEVNDLKNELIALFSkifSGWPRGDKLKKLisEGWVPTEYSTSLKGFNN 1245
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 465 LKKAhEATLEARASPEMSDRIQQLEREISRYKDESSKAQTEVDRLLEILKEvenekNDKDKKIAELESLTSRQVKDQNKK 544
Cdd:COG5022 1246 LNKK-FDTPASMSNEKLLSLLNSIDNLLSSYKLEEEVLPATINSLLQYINV-----GLFNALRTKASSLRWKSATEVNYN 1319
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 545 VANL----KHKEQVEKKKSAQMLEEARR----REDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEE 616
Cdd:COG5022 1320 SEELddwcREFEISDVDEELEELIQAVKvlqlLKDDLNKLDELLDACYSLNPAEIQNLKSRYDPADKENNLPKEILKKIE 1399
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|.
gi 1720416788 617 SARTNAEKQVE-ELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRA 666
Cdd:COG5022 1400 ALLIKQELQLSlEGKDETEVHLSEIFSEEKSLISLDRNSIYKEEVLSSLSA 1450
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
178-734 |
3.04e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 44.58 E-value: 3.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 178 EEEIQMLKSNGALSSEEREEEMKQMEVYRSHSKFMKNKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKES 257
Cdd:pfam02463 180 EETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQE 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 258 LTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRD 337
Cdd:pfam02463 260 IEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEE 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 338 KEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQE------EIDTYKKDLKDLREKVSL 411
Cdd:pfam02463 340 LEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEelelksEEEKEAQLLLELARQLED 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 412 LQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASPEMSDRIQQLERE 491
Cdd:pfam02463 420 LLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERS 499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 492 ISRYKDESSKAqTEVDRLLEILKEVENEKNDKDKKIAELESLTSRQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRRED 571
Cdd:pfam02463 500 QKESKARSGLK-VLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGAR 578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 572 SLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQ 651
Cdd:pfam02463 579 KLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGL 658
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 652 QSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQQTQNR 731
Cdd:pfam02463 659 AEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEEL 738
|
...
gi 1720416788 732 MKL 734
Cdd:pfam02463 739 KLL 741
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
6-674 |
3.14e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.57 E-value: 3.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 6 QALQDELRIQRDLNQLFQQDSSSRTGEPCVAELTEENFQRlhaeheRQAKELFLLRKTLEEmelrIETQKQTLNARDESI 85
Cdd:TIGR00618 250 EAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRA------RKAAPLAAHIKAVTQ----IEQQAQRIHTELQSK 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 86 KKLLEMLQSKGLSAKATEEDHERTRRLaeaEMHVHHLESLLEQKEKENNMLREEMHRRFEnapDSAKTKALQTVIEMKDS 165
Cdd:TIGR00618 320 MRSRAKLLMKRAAHVKQQSSIEEQRRL---LQTLHSQEIHIRDAHEVATSIREISCQQHT---LTQHIHTLQQQKTTLTQ 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 166 KISSMERGLRDLEEEIQMLKSNGALSSEEREEEM---KQMEVYRSHSKFMKNKIGQVKQELSRKDTELLALQTKLETLTN 242
Cdd:TIGR00618 394 KLQSLCKELDILQREQATIDTRTSAFRDLQGQLAhakKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQ 473
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 243 QFSDSKQHIEVLKESLTAKEQRAailqtevdalrLRLEEKETMLNKKTKQIqdmaEEKGTQAGEIHDLKDMLDVKERKVN 322
Cdd:TIGR00618 474 QLQTKEQIHLQETRKKAVVLARL-----------LELQEEPCPLCGSCIHP----NPARQDIDNPGPLTRRMQRGEQTYA 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 323 VLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQeeidtyKKDL 402
Cdd:TIGR00618 539 QLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAED------MLAC 612
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 403 KDLREKVSLlqgdlsEKEASLLDIKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASPEMS 482
Cdd:TIGR00618 613 EQHALLRKL------QPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQ 686
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 483 DRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELESLTSRQVKDQNKkvanLKHKEQVEKKKSAQM 562
Cdd:TIGR00618 687 SEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKE----LMHQARTVLKARTEA 762
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 563 LEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEremvlaqeesARTNAEKQVEELLMAMEKVKQELES 642
Cdd:TIGR00618 763 HFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAE----------IGQEIPSDEDILNLQCETLVQEEEQ 832
|
650 660 670
....*....|....*....|....*....|..
gi 1720416788 643 MKAKLSSTQQSLAEKETHLTNLrAERRKHLEE 674
Cdd:TIGR00618 833 FLSRLEEKSATLGEITHQLLKY-EECSKQLAQ 863
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
277-720 |
3.19e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 44.51 E-value: 3.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 277 LRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADT 356
Cdd:PRK01156 169 DKLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLE 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 357 TNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEID-------------TYKKDLKDLREKVSLLQGDLSEKEASL 423
Cdd:PRK01156 249 DMKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINDpvyknrnyindyfKYKNDIENKKQILSNIDAEINKYHAII 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 424 LDIKEhASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKaheatlearaspemsdrIQQLEREISRYKDESSKAQ 503
Cdd:PRK01156 329 KKLSV-LQKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKS-----------------IESLKKKIEEYSKNIERMS 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 504 TEVDRLLEILKEVENEKNDKDKKIaelesltSRQVKDQNKKVANLkhkeQVEKKKSAQMLEEARRREDSLS--------- 574
Cdd:PRK01156 391 AFISEILKIQEIDPDAIKKELNEI-------NVKLQDISSKVSSL----NQRIRALRENLDELSRNMEMLNgqsvcpvcg 459
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 575 -----DSSQQLQDSLRKKDDRIEE-LEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLS 648
Cdd:PRK01156 460 ttlgeEKSNHIINHYNEKKSRLEEkIREIEIEVKDIDEKIVDLKKRKEYLESEEINKSINEYNKIESARADLEDIKIKIN 539
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1720416788 649 stqqSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEkdanIALLELSSSKKKTQEEVAALKREKDRL 720
Cdd:PRK01156 540 ----ELKDKHDKYEEIKNRYKSLKLEDLDSKRTSWLNALAV----ISLIDIETNRSRSNEIKKQLNDLESRL 603
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
450-648 |
3.57e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 3.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 450 ALEQKKEECLKMESQLKKAHEATLEARAspEMSDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAE 529
Cdd:COG4942 31 QLQQEIAELEKELAALKKEEKALLKQLA--ALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 530 LesLTSRQVKDQNKKVANLKHKEQVEK------------KKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEA 597
Cdd:COG4942 109 L--LRALYRLGRQPPLALLLSPEDFLDavrrlqylkylaPARREQAEELRADLAELAALRAELEAERAELEALLAELEEE 186
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1720416788 598 LRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLS 648
Cdd:COG4942 187 RAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAA 237
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
208-400 |
3.91e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 3.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 208 HSKFMKNKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLeeketmLN 287
Cdd:COG4913 261 AERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQI------RG 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 288 KKTKQIQDMAEekgtqagEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQAdttntdtALTTLE 367
Cdd:COG4913 335 NGGDRLEQLER-------EIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLE-------ALEEEL 400
|
170 180 190
....*....|....*....|....*....|...
gi 1720416788 368 EALADKERTIERLKEQRDRDEREKQEEIDTYKK 400
Cdd:COG4913 401 EALEEALAEAEAALRDLRRELRELEAEIASLER 433
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
268-735 |
4.45e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.95 E-value: 4.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 268 LQTEVDALRLRLEEK-ETMLNKKTKQIQDMAEEKGTqagEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKE----KQM 342
Cdd:pfam15921 243 VEDQLEALKSESQNKiELLLQQHQDRIEQLISEHEV---EITGLTEKASSARSQANSIQSQLEIIQEQARNQNsmymRQL 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 343 SSLKERVKSLQADTtntdtalttlEEALADKERTIERLKEQ---RDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEK 419
Cdd:pfam15921 320 SDLESTVSQLRSEL----------REAKRMYEDKIEELEKQlvlANSELTEARTERDQFSQESGNLDDQLQKLLADLHKR 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 420 EASLLDIKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKkAHEATLEARASPEMSdRIQQLEREISRYKDES 499
Cdd:pfam15921 390 EKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLK-AMKSECQGQMERQMA-AIQGKNESLEKVSSLT 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 500 SKAQTEVDRLLEILKEVENEKNDKDKKIAELESLTS------RQVKDQNKKVANLKHKEQVeKKKSAQMLEEARRREDSL 573
Cdd:pfam15921 468 AQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTAslqekeRAIEATNAEITKLRSRVDL-KLQELQHLKNEGDHLRNV 546
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 574 SDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQS 653
Cdd:pfam15921 547 QTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEAR 626
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 654 LAEKETHLTNLRAERRKHLEEVLEMKQE--ALLAAI--SEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQLK---- 725
Cdd:pfam15921 627 VSDLELEKVKLVNAGSERLRAVKDIKQErdQLLNEVktSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKsaqs 706
|
490
....*....|..
gi 1720416788 726 --QQTQNRMKLM 735
Cdd:pfam15921 707 elEQTRNTLKSM 718
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
278-674 |
5.00e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.60 E-value: 5.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 278 RLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKE--RKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQAD 355
Cdd:COG4717 89 EYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPlyQELEALEAELAELPERLEELEERLEELRELEEELEEL 168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 356 TTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEH------ 429
Cdd:COG4717 169 EAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEerlkea 248
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 430 ----------ASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASPEMSDRIQQLEREISRYKDES 499
Cdd:COG4717 249 rlllliaaalLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAAL 328
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 500 SKAQTEVDRLLEILKEVENEKNDKDKKIAELESltSRQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQ 579
Cdd:COG4717 329 GLPPDLSPEELLELLDRIEELQELLREAEELEE--ELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEE 406
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 580 LQDSLRKKDDRIEELEEALREsvqitAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKaklssTQQSLAEKET 659
Cdd:COG4717 407 LEEQLEELLGELEELLEALDE-----EELEEELEELEEELEELEEELEELREELAELEAELEQLE-----EDGELAELLQ 476
|
410
....*....|....*
gi 1720416788 660 HLTNLRAERRKHLEE 674
Cdd:COG4717 477 ELEELKAELRELAEE 491
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
505-737 |
5.97e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.52 E-value: 5.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 505 EVDRLLEILKEVENEKNDKDKKIAELESLTSRQVKDQNKKV---ANLKHKEQVE-------KKKSAQMLEEARRREDSLS 574
Cdd:TIGR02169 171 KKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAEryqALLKEKREYEgyellkeKEALERQKEAIERQLASLE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 575 DSSQQLQDSLRKKDDRIEELEEALRE---SVQITAEREMVLAQE-----ESARTNAEKQVEELLMAMEKVKQELESMKAK 646
Cdd:TIGR02169 251 EELEKLTEEISELEKRLEEIEQLLEElnkKIKDLGEEEQLRVKEkigelEAEIASLERSIAEKERELEDAEERLAKLEAE 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 647 LSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQE--ALLAAISEKDANIALL--ELSSSKKK---TQEEVAALKREKDR 719
Cdd:TIGR02169 331 IDKLLAEIEELEREIEEERKRRDKLTEEYAELKEEleDLRAELEEVDKEFAETrdELKDYREKlekLKREINELKRELDR 410
|
250
....*....|....*...
gi 1720416788 720 LVQQLKQQTQNRMKLMAD 737
Cdd:TIGR02169 411 LQEELQRLSEELADLNAA 428
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
451-690 |
7.19e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 43.38 E-value: 7.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 451 LEQKKEECLKMESQLKKAHEAtLEARASPEMSDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAEL 530
Cdd:PRK05771 48 LRSLLTKLSEALDKLRSYLPK-LNPLREEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIERL 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 531 ESLTSRQVKDQNKK-------VANLKHKEQVEKKKsaqmLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALREsvq 603
Cdd:PRK05771 127 EPWGNFDLDLSLLLgfkyvsvFVGTVPEDKLEELK----LESDVENVEYISTDKGYVYVVVVVLKELSDEVEEELKK--- 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 604 itaeremvlAQEESARTNAEKQVEELLmamEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEmKQEAL 683
Cdd:PRK05771 200 ---------LGFERLELEEEGTPSELI---REIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELE-RAEAL 266
|
....*...
gi 1720416788 684 L-AAISEK 690
Cdd:PRK05771 267 SkFLKTDK 274
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
282-730 |
9.10e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.09 E-value: 9.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 282 KETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDT 361
Cdd:TIGR04523 31 QDTEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINS 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 362 ALTTLEEALADKERTIERLKEQRdrdeREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKD 441
Cdd:TIGR04523 111 EIKNDKEQKNKLEVELNKLEKQK----KENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQ 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 442 SRLKTLEIALEQKKEECLKMESQLKKAHEATLE----ARASPEMSDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVE 517
Cdd:TIGR04523 187 KNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQiselKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIK 266
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 518 NEKNDKDKKIAEleslTSRQVKDQNKKVANLKHKEQVEKKKSAQML-----EEARRREDSLSDSSQQL---QDSLRKKDD 589
Cdd:TIGR04523 267 KQLSEKQKELEQ----NNKKIKELEKQLNQLKSEISDLNNQKEQDWnkelkSELKNQEKKLEEIQNQIsqnNKIISQLNE 342
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 590 RIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERR 669
Cdd:TIGR04523 343 QISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKE 422
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720416788 670 KHLEEVLEMKQEALLAAISEKD-------ANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQQTQN 730
Cdd:TIGR04523 423 LLEKEIERLKETIIKNNSEIKDltnqdsvKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKE 490
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
306-531 |
9.29e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 42.69 E-value: 9.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 306 EIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRD 385
Cdd:PHA02562 161 DISVLSEMDKLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELT 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 386 RDEREKQEEIDTYKKDLKDLREKVSLLQGDLS--EKEASLL-----------DIKEHASSLAssglKKDSRLKTLEIALE 452
Cdd:PHA02562 241 DELLNLVMDIEDPSAALNKLNTAAAKIKSKIEqfQKVIKMYekggvcptctqQISEGPDRIT----KIKDKLKELQHSLE 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 453 QKKEECLKMESQLKKAHEATLEARaspEMSDRIQQLEREISRYKDESSKAQTEVDRLL-------EILKEVENEKNDKDK 525
Cdd:PHA02562 317 KLDTAIDELEEIMDEFNEQSKKLL---ELKNKISTNKQSLITLVDKAKKVKAAIEELQaefvdnaEELAKLQDELDKIVK 393
|
....*.
gi 1720416788 526 KIAELE 531
Cdd:PHA02562 394 TKSELV 399
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
249-687 |
1.12e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.45 E-value: 1.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 249 QHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKgtqagEIHDLKDMLDVKERKVNVLQKKI 328
Cdd:COG4717 81 KEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQ-----ELEALEAELAELPERLEELEERL 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 329 ENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLREK 408
Cdd:COG4717 156 EELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENE 235
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 409 VSLLQ--GDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASPEMSDRIQ 486
Cdd:COG4717 236 LEAAAleERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEE 315
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 487 QLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELESltSRQVKDQNKKVANLKHKEQVEKkksaqmlEEA 566
Cdd:COG4717 316 LEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEE--ELQLEELEQEIAALLAEAGVED-------EEE 386
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 567 RRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMvlaqeesartnaEKQVEELLMAMEKVKQELESMKAK 646
Cdd:COG4717 387 LRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEEL------------EEELEELEEELEELEEELEELREE 454
|
410 420 430 440
....*....|....*....|....*....|....*....|...
gi 1720416788 647 LSSTQQSL--AEKETHLTNLRAERRKHLEEVLEMKQEALLAAI 687
Cdd:COG4717 455 LAELEAELeqLEEDGELAELLQELEELKAELRELAEEWAALKL 497
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
6-736 |
1.25e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 42.65 E-value: 1.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 6 QALQDELRIQRDLNQLFQQDSSSRTGEPCVAELTEENFQRLHAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESI 85
Cdd:pfam02463 233 KLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDD 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 86 KKLLEMLQSKGLSAKATEEDHERTRRLAEAEMHVHHLESLLEQKEKENNMLREEMHRRFENAPDSAKTKA---LQTVIEM 162
Cdd:pfam02463 313 EEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLEserLSSAAKL 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 163 KDSKISSMERGLRDLEEEIQMLKSNGALSSEEREEEMKQMEVYRSHSKFMKNKIGQVKQELSRKDTELLALQTKLETLTN 242
Cdd:pfam02463 393 KEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSED 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 243 QFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVN 322
Cdd:pfam02463 473 LLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVE 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 323 VLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEE--ALADKERTIERLKEQRDRDEREKQEEIDTYKK 400
Cdd:pfam02463 553 VSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEidPILNLAQLDKATLEADEDDKRAKVVEGILKDT 632
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 401 DLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASPE 480
Cdd:pfam02463 633 ELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEEL 712
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 481 MSDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVE-------NEKNDKDKKIAELESLTSRQVKDQNKKVANLKHKEQ 553
Cdd:pfam02463 713 KKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEeeeeksrLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEK 792
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 554 VEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLmaM 633
Cdd:pfam02463 793 EEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELL--Q 870
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 634 EKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAAL 713
Cdd:pfam02463 871 ELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEK 950
|
730 740
....*....|....*....|...
gi 1720416788 714 KREKDRLVQQLKQQTQNRMKLMA 736
Cdd:pfam02463 951 EENNKEEEEERNKRLLLAKEELG 973
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
480-734 |
1.40e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 42.36 E-value: 1.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 480 EMSDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELESLTSR--QVKDQNKKVANLKHKEQVEKK 557
Cdd:PRK03918 173 EIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEvkELEELKEEIEELEKELESLEG 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 558 KSAQMLEEARRREDSLSDSSQQLQDsLRKKDDRIEELEEALRESVQITAEREMVLaQEESARTNAEKQVEELLMAMEKVK 637
Cdd:PRK03918 253 SKRKLEEKIRELEERIEELKKEIEE-LEEKVKELKELKEKAEEYIKLSEFYEEYL-DELREIEKRLSRLEEEINGIEERI 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 638 QELESMKAKLSSTQQSLAEKETHLTNLRaERRKHLEEVLEMKQE-----ALLAAISEKDANIALLELSSSKKKTQEEVAA 712
Cdd:PRK03918 331 KELEEKEERLEELKKKLKELEKRLEELE-ERHELYEEAKAKKEElerlkKRLTGLTPEKLEKELEELEKAKEEIEEEISK 409
|
250 260
....*....|....*....|..
gi 1720416788 713 LKREKDRLVQQLKQQTQNRMKL 734
Cdd:PRK03918 410 ITARIGELKKEIKELKKAIEEL 431
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
461-698 |
1.53e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.31 E-value: 1.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 461 MESQLKKAHEATLEARAS-----PEMSDRIQQLEREISRYKDESS--KAQTEVDRLLEILKEVENEKNDKDKKIAELESL 533
Cdd:COG3206 162 LEQNLELRREEARKALEFleeqlPELRKELEEAEAALEEFRQKNGlvDLSEEAKLLLQQLSELESQLAEARAELAEAEAR 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 534 ---TSRQVKDQNKKVANLKHKEQVEKKKSAqmLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEalresvQITAEREM 610
Cdd:COG3206 242 laaLRAQLGSGPDALPELLQSPVIQQLRAQ--LAELEAELAELSARYTPNHPDVIALRAQIAALRA------QLQQEAQR 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 611 VLAQEESARTNAEKQVEELlmamekvKQELESMKAKLsstqQSLAEKETHLTNLRAER---RKHLEEVLEMKQEALLAAi 687
Cdd:COG3206 314 ILASLEAELEALQAREASL-------QAQLAQLEARL----AELPELEAELRRLEREVevaRELYESLLQRLEEARLAE- 381
|
250
....*....|.
gi 1720416788 688 SEKDANIALLE 698
Cdd:COG3206 382 ALTVGNVRVID 392
|
|
| RecN |
COG0497 |
DNA repair ATPase RecN [Replication, recombination and repair]; |
483-733 |
2.20e-03 |
|
DNA repair ATPase RecN [Replication, recombination and repair];
Pssm-ID: 440263 [Multi-domain] Cd Length: 555 Bit Score: 41.60 E-value: 2.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 483 DRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENekndkdkkiaelesltsrqvkdqnkkvANLKHKEQVEKKKSAQM 562
Cdd:COG0497 165 RAWRALKKELEELRADEAERARELDLLRFQLEELEA---------------------------AALQPGEEEELEEERRR 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 563 LEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALREsvqitaeremvLAQEESARTNAEKQVEELLMAMEKVKQELES 642
Cdd:COG0497 218 LSNAEKLREALQEALEALSGGEGGALDLLGQALRALER-----------LAEYDPSLAELAERLESALIELEEAASELRR 286
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 643 MKAKLSSTQQSLAEKETHLTNLRAERRKH---LEEVLEMKQEAL--LAAISEKDANIALLElssskkktqEEVAALKREK 717
Cdd:COG0497 287 YLDSLEFDPERLEEVEERLALLRRLARKYgvtVEELLAYAEELRaeLAELENSDERLEELE---------AELAEAEAEL 357
|
250
....*....|....*.
gi 1720416788 718 DRLVQQLkqqTQNRMK 733
Cdd:COG0497 358 LEAAEKL---SAARKK 370
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
195-734 |
2.22e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 41.70 E-value: 2.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 195 REEEMKQMEVYRSHSKFMKNKIGQVKQELSRKDTELLA----LQTKLETLTNQFSDS----------KQHIEVLKESLTA 260
Cdd:pfam01576 3 QEEEMQAKEEELQKVKERQQKAESELKELEKKHQQLCEeknaLQEQLQAETELCAEAeemrarlaarKQELEEILHELES 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 261 K----EQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLR 336
Cdd:pfam01576 83 RleeeEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKERKLLEERIS 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 337 DKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERT---IERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQ 413
Cdd:pfam01576 163 EFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGrqeLEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKE 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 414 GDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASPEMSDRIQQLEREIs 493
Cdd:pfam01576 243 EELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTELEDTLDTTAAQQEL- 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 494 rykdeSSKAQTEVDrllEILKEVENEKNDKDKKIAELESLTSRQVKDQNKKVANLKH-KEQVEKKKSAQMLEEARRRED- 571
Cdd:pfam01576 322 -----RSKREQEVT---ELKKALEEETRSHEAQLQEMRQKHTQALEELTEQLEQAKRnKANLEKAKQALESENAELQAEl 393
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 572 -SLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSST 650
Cdd:pfam01576 394 rTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDT 473
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 651 QQSLAEKETHLTNLRA------ERRKHLEEVLEMKQEALLAAisEKDANIALLELSSSKKKTQEEVAA----------LK 714
Cdd:pfam01576 474 QELLQEETRQKLNLSTrlrqleDERNSLQEQLEEEEEAKRNV--ERQLSTLQAQLSDMKKKLEEDAGTlealeegkkrLQ 551
|
570 580
....*....|....*....|
gi 1720416788 715 REKDRLVQQLKQQTQNRMKL 734
Cdd:pfam01576 552 RELEALTQQLEEKAAAYDKL 571
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
466-655 |
2.75e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.30 E-value: 2.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 466 KKAHEATLEARaspemsDRIQQLEREISRYKDEsskAQTEV-DRLLEILKEVENEKNDKDKKIAELESLTSRQVKDQNKK 544
Cdd:PRK12704 31 AKIKEAEEEAK------RILEEAKKEAEAIKKE---ALLEAkEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRK 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 545 VANLKHKEQ-VEKKKsaqmlEEARRREDSLSDSSQQLQdslRKKDDRIEELEEAlresVQITAE--REMVLAQ-EESART 620
Cdd:PRK12704 102 LELLEKREEeLEKKE-----KELEQKQQELEKKEEELE---ELIEEQLQELERI----SGLTAEeaKEILLEKvEEEARH 169
|
170 180 190
....*....|....*....|....*....|....*..
gi 1720416788 621 NAEKQVEEllmAMEKVKQELEsMKAK--LSSTQQSLA 655
Cdd:PRK12704 170 EAAVLIKE---IEEEAKEEAD-KKAKeiLAQAIQRCA 202
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
483-667 |
3.32e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.05 E-value: 3.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 483 DRIQQLEREISRYKDESSKAQTEVDRL------LEILKEVENEKNDKDKKIAELESLTS--RQVKDQNKKVANLKhkeqv 554
Cdd:COG4913 617 AELAELEEELAEAEERLEALEAELDALqerreaLQRLAEYSWDEIDVASAEREIAELEAelERLDASSDDLAALE----- 691
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 555 ekkksaQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMvlAQEESARTNAEKQVEELLMAmE 634
Cdd:COG4913 692 ------EQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAED--LARLELRALLEERFAAALGD-A 762
|
170 180 190
....*....|....*....|....*....|...
gi 1720416788 635 KVKQELESMKAKLSSTQQSLAEKETHLTNLRAE 667
Cdd:COG4913 763 VERELRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| PspC_subgroup_1 |
NF033838 |
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ... |
319-729 |
3.52e-03 |
|
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.
Pssm-ID: 468201 [Multi-domain] Cd Length: 684 Bit Score: 41.15 E-value: 3.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 319 RKVNVLQKKIENLQEQLRDKEKQMSSLKERvKSLQADTTNTDTALTTLEEALADKERTIE----RLKEQRDRDERekQEE 394
Cdd:NF033838 91 KKLSDIKTEYLYELNVLKEKSEAELTSKTK-KELDAAFEQFKKDTLEPGKKVAEATKKVEeaekKAKDQKEEDRR--NYP 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 395 IDTYKKDLKDLREkvsllqGDLSEKEASLLDIKEHASslassGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLE 474
Cdd:NF033838 168 TNTYKTLELEIAE------SDVEVKKAELELVKEEAK-----EPRDEEKIKQAKAKVESKKAEATRLEKIKTDREKAEEE 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 475 ARASPEMSDRIQQLEREISRYKDES-SKAQTEVDRLLEILKEVENEKNDKDKKIAElESLTSRQVKDQnKKVANLKHKEQ 553
Cdd:NF033838 237 AKRRADAKLKEAVEKNVATSEQDKPkRRAKRGVLGEPATPDKKENDAKSSDSSVGE-ETLPSPSLKPE-KKVAEAEKKVE 314
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 554 VEKKKSAQMLEEARRREDSLSdssqqlqdslrkkddrIEELEEALRESVQITAEREMVLAQEESARTNAEKQVeellmam 633
Cdd:NF033838 315 EAKKKAKDQKEEDRRNYPTNT----------------YKTLELEIAESDVKVKEAELELVKEEAKEPRNEEKI------- 371
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 634 EKVKQELESMKA---KLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEA------LLAAISEKDANIALLELSSSKK 704
Cdd:NF033838 372 KQAKAKVESKKAeatRLEKIKTDRKKAEEEAKRKAAEEDKVKEKPAEQPQPApapqpeKPAPKPEKPAEQPKAEKPADQQ 451
|
410 420
....*....|....*....|....*
gi 1720416788 705 KTQEEVAALKREKDRLVQQLKQQTQ 729
Cdd:NF033838 452 AEEDYARRSEEEYNRLTQQQPPKTE 476
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
151-350 |
3.96e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.52 E-value: 3.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 151 AKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSSEEREEEMKQMEVYRSHSKFMKNKIgqvkQELSRKDTEL 230
Cdd:COG4942 48 KEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLRAL----YRLGRQPPLA 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 231 LALQTKletltnQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDL 310
Cdd:COG4942 124 LLLSPE------DFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAER 197
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1720416788 311 KDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVK 350
Cdd:COG4942 198 QKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAA 237
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
283-504 |
4.26e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.58 E-value: 4.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 283 ETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQ------ADT 356
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERReelgerARA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 357 TNTDTALTTLEEALADKE------RTIERLKEQRDRDerekQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHA 430
Cdd:COG3883 95 LYRSGGSVSYLDVLLGSEsfsdflDRLSALSKIADAD----ADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAK 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1720416788 431 SSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASPEMSDRIQQLEREISRYKDESSKAQT 504
Cdd:COG3883 171 AELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 244
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
298-495 |
4.91e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.67 E-value: 4.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 298 EEKGTQAGEIHDLKDMLDV--KERKVNVLQKKIENLQEQLRDKEKQMSSLKERvkslqadttntdtalttleeaLADKER 375
Cdd:COG4913 265 AAARERLAELEYLRAALRLwfAQRRLELLEAELEELRAELARLEAELERLEAR---------------------LDALRE 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 376 TIERLKEQRDRDereKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIALEQKK 455
Cdd:COG4913 324 ELDELEAQIRGN---GGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEEL 400
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1720416788 456 EECLKMESQLKKAHEATLEARAspEMSDRIQQLEREISRY 495
Cdd:COG4913 401 EALEEALAEAEAALRDLRRELR--ELEAEIASLERRKSNI 438
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
387-600 |
5.67e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.67 E-value: 5.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 387 DEREKQEEIDTYKKDLKDLREKVSLLQgDLSEKEASLLDIKEHASSLAssglKKDSRLKTLEialeqkkeeclkmesQLK 466
Cdd:COG4913 219 EEPDTFEAADALVEHFDDLERAHEALE-DAREQIELLEPIRELAERYA----AARERLAELE---------------YLR 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 467 KAHEATLEARASPEMSDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKD--------KKIAELES---LTS 535
Cdd:COG4913 279 AALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGgdrleqleREIERLEReleERE 358
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1720416788 536 RQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRE 600
Cdd:COG4913 359 RRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRE 423
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
504-690 |
5.91e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.14 E-value: 5.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 504 TEVDRLLEILKEVENEKNDKDKKIAELESLTSRQVKDQNKKVANLKHKEQVEKKKSAQMLEEARrredslsdssQQLQDS 583
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQEL----------EALEAE 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 584 LRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEkvkQELESMKAKLSSTQQSLAEKETHLTN 663
Cdd:COG4717 141 LAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATE---EELQDLAEELEELQQRLAELEEELEE 217
|
170 180
....*....|....*....|....*..
gi 1720416788 664 LRAERRKHLEEVLEMKQEALLAAISEK 690
Cdd:COG4717 218 AQEELEELEEELEQLENELEAAALEER 244
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
570-740 |
6.44e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.00 E-value: 6.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 570 EDSLSDSSQQLQDSLRKKDDRIEELEEALREsvqitAEREMVLAQEESARTNAEKQVEELLmamekvkQELESMKAKLSS 649
Cdd:COG3206 163 EQNLELRREEARKALEFLEEQLPELRKELEE-----AEAALEEFRQKNGLVDLSEEAKLLL-------QQLSELESQLAE 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 650 TQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEK--DANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQQ 727
Cdd:COG3206 231 ARAELAEAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQlaELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQE 310
|
170
....*....|...
gi 1720416788 728 TQNRMKLMADNYE 740
Cdd:COG3206 311 AQRILASLEAELE 323
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
53-304 |
7.94e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.36 E-value: 7.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 53 QAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQskglsaKATEEDHERTRRLAEAEMHVHHLESLLEQKEKE 132
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLA------ALERRIAALARRIRALEQELAALEAELAELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 133 NNMLREEMHRRFENapdsaktkalqtviemkdskissMERGLRDLEEEIQMLKSNGALSSEEREEEMKQMEVYRSHSKFM 212
Cdd:COG4942 92 IAELRAELEAQKEE-----------------------LAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPAR 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 213 KNKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQ 292
Cdd:COG4942 149 REQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEAL 228
|
250
....*....|..
gi 1720416788 293 IQDMAEEKGTQA 304
Cdd:COG4942 229 IARLEAEAAAAA 240
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
59-383 |
8.47e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 40.10 E-value: 8.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 59 LLRKTLEEMElrieTQKQTLNARDESIKKLLEMLQSKGLSAKATeeDHERTRRLAEAEMHVHHLESLLEQKEKENNMLRE 138
Cdd:pfam15921 476 MLRKVVEELT----AKKMTLESSERTVSDLTASLQEKERAIEAT--NAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTE 549
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 139 EMHRRFENAPDSAKTKALQTVIEMKDSKI--------------SSMERGLRDLEEEIQMLKsngaLSSEEREEEMKQMEV 204
Cdd:pfam15921 550 CEALKLQMAEKDKVIEILRQQIENMTQLVgqhgrtagamqvekAQLEKEINDRRLELQEFK----ILKDKKDAKIRELEA 625
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 205 YRSHSKFMKNKIGQVKQELSRK----DTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRaaiLQTEVDALRLRLE 280
Cdd:pfam15921 626 RVSDLELEKVKLVNAGSERLRAvkdiKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEE---METTTNKLKMQLK 702
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 281 EKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTD 360
Cdd:pfam15921 703 SAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVA 782
|
330 340
....*....|....*....|...
gi 1720416788 361 TALTTLEEALADKERTIERLKEQ 383
Cdd:pfam15921 783 TEKNKMAGELEVLRSQERRLKEK 805
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
291-428 |
8.60e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 38.75 E-value: 8.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 291 KQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTleEAL 370
Cdd:COG1579 17 SELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKEY--EAL 94
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 1720416788 371 ADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKE 428
Cdd:COG1579 95 QKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELA 152
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
445-600 |
8.83e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 39.84 E-value: 8.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416788 445 KTLEIALEQKKEECLKMESQlKKAHEATLEARASPEMSDRIQQLEREISRYkdesskaQTEVDRLLEILKEvenekndKD 524
Cdd:COG2433 376 LSIEEALEELIEKELPEEEP-EAEREKEHEERELTEEEEEIRRLEEQVERL-------EAEVEELEAELEE-------KD 440
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1720416788 525 KKIAELEsltsrqvkdqnkkvanlkhkEQVEKKKSAQMLEEARRREDSLSDSS-QQLQDSLRKKDDRIEELEEALRE 600
Cdd:COG2433 441 ERIERLE--------------------RELSEARSEERREIRKDREISRLDREiERLERELEEERERIEELKRKLER 497
|
|
| |
