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Conserved domains on  [gi|1720410383|ref|XP_030109774|]
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snRNA-activating protein complex subunit 3 isoform X4 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SNAPC3 super family cl13659
snRNA-activating protein complex (SNAPc), subunit 3; This entry represents the C-terminal part ...
 198-268 5.49e-24

snRNA-activating protein complex (SNAPc), subunit 3; This entry represents the C-terminal part of the SNAPC3 protein found in eukaryotes. This protein is part of the snRNA-activating protein complex which activates RNA polymerases II and III. There is a cysteine-histidine cluster which contains two possible zinc finger motifs.


The actual alignment was detected with superfamily member pfam12251:

Pssm-ID: 463506  Cd Length: 191  Bit Score: 95.74  E-value: 5.49e-24
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1720410383 198 QTMLVLGSQKLTELRDSICCVSDLqiggefsnapdqaPEHISKDLYKSAFFYFEGTFYNDRRYPECRDLSR 268
Cdd:pfam12251   1 QEFLVLGSQTLTELRDKIYCVSDK-------------LEELAKDKYKSGFFFIEDTFYNDLRDPNNIDYSE 58
 
Name Accession Description Interval E-value
SNAPC3 pfam12251
snRNA-activating protein complex (SNAPc), subunit 3; This entry represents the C-terminal part ...
 198-268 5.49e-24

snRNA-activating protein complex (SNAPc), subunit 3; This entry represents the C-terminal part of the SNAPC3 protein found in eukaryotes. This protein is part of the snRNA-activating protein complex which activates RNA polymerases II and III. There is a cysteine-histidine cluster which contains two possible zinc finger motifs.


Pssm-ID: 463506  Cd Length: 191  Bit Score: 95.74  E-value: 5.49e-24
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1720410383 198 QTMLVLGSQKLTELRDSICCVSDLqiggefsnapdqaPEHISKDLYKSAFFYFEGTFYNDRRYPECRDLSR 268
Cdd:pfam12251   1 QEFLVLGSQTLTELRDKIYCVSDK-------------LEELAKDKYKSGFFFIEDTFYNDLRDPNNIDYSE 58
 
Name Accession Description Interval E-value
SNAPC3 pfam12251
snRNA-activating protein complex (SNAPc), subunit 3; This entry represents the C-terminal part ...
 198-268 5.49e-24

snRNA-activating protein complex (SNAPc), subunit 3; This entry represents the C-terminal part of the SNAPC3 protein found in eukaryotes. This protein is part of the snRNA-activating protein complex which activates RNA polymerases II and III. There is a cysteine-histidine cluster which contains two possible zinc finger motifs.


Pssm-ID: 463506  Cd Length: 191  Bit Score: 95.74  E-value: 5.49e-24
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1720410383 198 QTMLVLGSQKLTELRDSICCVSDLqiggefsnapdqaPEHISKDLYKSAFFYFEGTFYNDRRYPECRDLSR 268
Cdd:pfam12251   1 QEFLVLGSQTLTELRDKIYCVSDK-------------LEELAKDKYKSGFFFIEDTFYNDLRDPNNIDYSE 58
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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