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Conserved domains on  [gi|1720375836|ref|XP_030103276|]
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zinc finger BED domain-containing protein 3 isoform X1 [Mus musculus]

Protein Classification

zinc finger BED domain-containing protein( domain architecture ID 10652289)

zinc finger BED domain-containing protein (ZBED) may function as a transcriptional regulator

Gene Ontology:  GO:0046872|GO:0003677
PubMed:  10973053|23533661

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ZnF_BED smart00614
BED zinc finger; DNA-binding domain in chromatin-boundary-element-binding proteins and ...
 37-91 3.78e-06

BED zinc finger; DNA-binding domain in chromatin-boundary-element-binding proteins and transposases


:

Pssm-ID: 214746 [Multi-domain]  Cd Length: 50  Bit Score: 42.80  E-value: 3.78e-06
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1720375836   37 EAWGYFHL-DPAQPRHrmmsAWATCRLCGLQVGGLPNfqMWTRALCQHLSDVHLPE 91
Cdd:smart00614   1 KVWKHFTLiLEKDNGK----QRAKCKYCGKKLSRSSK--GGTSNLRRHLRRKHPAR 50
PRK12704 super family cl36166
phosphodiesterase; Provisional
 136-189 1.62e-04

phosphodiesterase; Provisional


The actual alignment was detected with superfamily member PRK12704:

Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 42.07  E-value: 1.62e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1720375836 136 QRELELERREAALMQAELELERKRQALKQEAQSVEQERHQLQVEREALSKWIKK 189
Cdd:PRK12704   79 ERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEE 132
 
Name Accession Description Interval E-value
ZnF_BED smart00614
BED zinc finger; DNA-binding domain in chromatin-boundary-element-binding proteins and ...
 37-91 3.78e-06

BED zinc finger; DNA-binding domain in chromatin-boundary-element-binding proteins and transposases


Pssm-ID: 214746 [Multi-domain]  Cd Length: 50  Bit Score: 42.80  E-value: 3.78e-06
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1720375836   37 EAWGYFHL-DPAQPRHrmmsAWATCRLCGLQVGGLPNfqMWTRALCQHLSDVHLPE 91
Cdd:smart00614   1 KVWKHFTLiLEKDNGK----QRAKCKYCGKKLSRSSK--GGTSNLRRHLRRKHPAR 50
PRK12704 PRK12704
phosphodiesterase; Provisional
 136-189 1.62e-04

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 42.07  E-value: 1.62e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1720375836 136 QRELELERREAALMQAELELERKRQALKQEAQSVEQERHQLQVEREALSKWIKK 189
Cdd:PRK12704   79 ERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEE 132
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 115-184 1.67e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 39.15  E-value: 1.67e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720375836 115 AAEGDWARLLEQMGELAMRGSQRELELERREAALMQAELELERKRQALKQEAQSVEQERHQLQVEREALS 184
Cdd:COG1196   313 ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELE 382
LCD1 pfam09798
DNA damage checkpoint protein; This is a family of proteins which regulate checkpoint kinases. ...
 129-195 3.52e-03

DNA damage checkpoint protein; This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe this protein is called Rad26 and in Saccharomyces cerevisiae it is called LCD1.


Pssm-ID: 462906  Cd Length: 615  Bit Score: 38.07  E-value: 3.52e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1720375836 129 ELAMRGSQRELELERREAALMQAELELERKRQALKQEAQSVEQERHQLQVEREALSKWIKKQSPGAQ 195
Cdd:pfam09798   5 KLELLQQEKEKELEKLKNSYEELKSSHEEELEKLKQEVQKLEDEKKFLLNELRSLSATSPASSQSHE 71
 
Name Accession Description Interval E-value
ZnF_BED smart00614
BED zinc finger; DNA-binding domain in chromatin-boundary-element-binding proteins and ...
 37-91 3.78e-06

BED zinc finger; DNA-binding domain in chromatin-boundary-element-binding proteins and transposases


Pssm-ID: 214746 [Multi-domain]  Cd Length: 50  Bit Score: 42.80  E-value: 3.78e-06
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1720375836   37 EAWGYFHL-DPAQPRHrmmsAWATCRLCGLQVGGLPNfqMWTRALCQHLSDVHLPE 91
Cdd:smart00614   1 KVWKHFTLiLEKDNGK----QRAKCKYCGKKLSRSSK--GGTSNLRRHLRRKHPAR 50
PRK12704 PRK12704
phosphodiesterase; Provisional
 136-189 1.62e-04

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 42.07  E-value: 1.62e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1720375836 136 QRELELERREAALMQAELELERKRQALKQEAQSVEQERHQLQVEREALSKWIKK 189
Cdd:PRK12704   79 ERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEE 132
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 115-184 1.67e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 39.15  E-value: 1.67e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720375836 115 AAEGDWARLLEQMGELAMRGSQRELELERREAALMQAELELERKRQALKQEAQSVEQERHQLQVEREALS 184
Cdd:COG1196   313 ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELE 382
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 120-195 2.25e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 38.76  E-value: 2.25e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1720375836 120 WARLLEQMGELAMRGSQRELELERREAALMQAELELERKRQALKQEAQSVEQERHQLQVEREALSKWIKKQSPGAQ 195
Cdd:COG1196   234 LRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEE 309
LCD1 pfam09798
DNA damage checkpoint protein; This is a family of proteins which regulate checkpoint kinases. ...
 129-195 3.52e-03

DNA damage checkpoint protein; This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe this protein is called Rad26 and in Saccharomyces cerevisiae it is called LCD1.


Pssm-ID: 462906  Cd Length: 615  Bit Score: 38.07  E-value: 3.52e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1720375836 129 ELAMRGSQRELELERREAALMQAELELERKRQALKQEAQSVEQERHQLQVEREALSKWIKKQSPGAQ 195
Cdd:pfam09798   5 KLELLQQEKEKELEKLKNSYEELKSSHEEELEKLKQEVQKLEDEKKFLLNELRSLSATSPASSQSHE 71
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 115-183 3.73e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 37.99  E-value: 3.73e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1720375836 115 AAEGDWARLLEQMGELAMR-------GSQRELELERREAALMQAELELERKRQALKQEAQSVEQERHQLQVEREAL 183
Cdd:COG1196   236 ELEAELEELEAELEELEAEleeleaeLAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERR 311
PRK00409 PRK00409
recombination and DNA strand exchange inhibitor protein; Reviewed
 125-182 3.82e-03

recombination and DNA strand exchange inhibitor protein; Reviewed


Pssm-ID: 234750 [Multi-domain]  Cd Length: 782  Bit Score: 37.88  E-value: 3.82e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720375836 125 EQMGELAMRGSQRELELERREAALMQAELELERKRQALKQEAQSVEQERHQL--QVEREA 182
Cdd:PRK00409  516 EKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLleEAEKEA 575
fliH PRK06800
flagellar assembly protein H; Validated
 136-190 6.21e-03

flagellar assembly protein H; Validated


Pssm-ID: 180700  Cd Length: 228  Bit Score: 36.78  E-value: 6.21e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1720375836 136 QRELELERREAALMQAELELERKRQALKQEAQSVEQERHQLQVEREALSKWIKKQ 190
Cdd:PRK06800   31 EVEEEIQKDHEELLAQQKSLHKELNQLRQEQQKLERERQQLLADREQFQEHVQQQ 85
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
119-183 7.45e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 37.20  E-value: 7.45e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1720375836  119 DWARLLEQMGEL-----AMRGSQREL-ELERREAALMQAELELERKRQALKQEAQSVEQERHQLQVEREAL 183
Cdd:COG4913    662 DVASAEREIAELeaeleRLDASSDDLaALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDEL 732
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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