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Conserved domains on  [gi|1708953624|ref|XP_029897162|]
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protein O-mannosyl-transferase TMTC1 [Aquila chrysaetos chrysaetos]

Protein Classification

transmembrane and TPR repeat-containing protein( domain architecture ID 13750405)

transmembrane and TPR repeat-containing (TMTC) protein functions as a protein O-mannosyl-transferase, catalyzing the transfer of mannosyl residues to the hydroxyl group of serine or threonine residues

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 553-813 1.49e-41

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 153.73  E-value: 1.49e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 553 YNYANFLKDQGRNVEAIYHYKTALKLYPRHASALNNLGTL---TKDVVEAKDYYRRALQLNPQHNRALFNLGNLLKSQGK 629
Cdd:COG2956    12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLyrrRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 630 KEEAVILLRDSIKYGPEFADAYSSLASLLAEQERLKEAEEVYKAGIENCPESSDLHNNYGVFLVDTGAPERAVSHYRQAI 709
Cdd:COG2956    92 LDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKAL 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 710 HLSPAHHVAMVNLGRLHRSLGQNKEAEVWYKRALKVS-RKGEILSPLGALYYNTGRYEEALQVYREAASLQPSNkEIRLA 788
Cdd:COG2956   172 KLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDpDYLPALPRLAELYEKLGDPEEALELLRKALELDPSD-DLLLA 250

                         250       260
                  ....*....|....*....|....*
gi 1708953624 789 LAQVLAMMGRTKEAEKMTNHILNED 813
Cdd:COG2956   251 LADLLERKEGLEAALALLERQLRRH 275
TMTC_DUF1736 pfam08409
Protein O-mannosyl-transferase TMTC, DUF1736; This domain of unknown function is found in ...
 358-431 4.08e-37

Protein O-mannosyl-transferase TMTC, DUF1736; This domain of unknown function is found in O-mannosyl -transferases TMTC1-4, and constitutes a loop between TM7 and TM8 located in the ER lumen that contains a small hydrophobic, but not membrane-embedded helix. This loop is critical for catalysis and binding of ligands, especially the lipid-linked sugar moiety. TMTCs transfers mannosyl residues to the hydroxyl group of serine or threonine residues. The 4 members of the TMTC family are O-mannosyl-transferases acting primarily on the cadherin superfamily; each member has distinct roles in decorating the cadherin domains with O-linked mannose glycans at specific regions. These proteins also act as O-mannosyl-transferase on other proteins such as PDIA3.


:

Pssm-ID: 462468  Cd Length: 75  Bit Score: 133.42  E-value: 4.08e-37
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1708953624 358 GGSMPMFSEQDNPASFSPYLLTRFLTYSYLLAFNAWLLLAPITLCYDWQVGSIPLIESVWDARNLATVFLVLVM 431
Cdd:pfam08409   1 GGQLPVFSASDNPAAFSPSLLTRTLTYNYLPALNAWLLLFPSWLCFDWSMGSIPLIESLSDPRNLATLAFYGAL 74
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 689-944 5.02e-36

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 137.94  E-value: 5.02e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 689 GVFLVDTGAPERAVSHYRQAIHLSPAHHVAMVNLGRLHRSLGQNKEAEVWYKRALKVS-RKGEILSPLGALYYNTGRYEE 767
Cdd:COG2956    15 GLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDpDRAEALLELAQDYLKAGLLDR 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 768 ALQVYREAASLQPSNKEIRLALAQVLAMMGRTKEAEKMTNHILNEDVECLECYRLLSAIYSKQEHYAKALEAIEKALQLK 847
Cdd:COG2956    95 AEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLD 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 848 PKDPKVISELfftkGNQLREQNLLDKAFESYKRAVELNPDQAQAWMNMGGIEHIKGSYITARGYYEKALQLVPNSKLLkE 927
Cdd:COG2956   175 PDCARALLLL----AELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLL-L 249

                         250
                  ....*....|....*..
gi 1708953624 928 NLAKLDRLEKRFQEVQE 944
Cdd:COG2956   250 ALADLLERKEGLEAALA 266
 
Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 553-813 1.49e-41

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 153.73  E-value: 1.49e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 553 YNYANFLKDQGRNVEAIYHYKTALKLYPRHASALNNLGTL---TKDVVEAKDYYRRALQLNPQHNRALFNLGNLLKSQGK 629
Cdd:COG2956    12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLyrrRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 630 KEEAVILLRDSIKYGPEFADAYSSLASLLAEQERLKEAEEVYKAGIENCPESSDLHNNYGVFLVDTGAPERAVSHYRQAI 709
Cdd:COG2956    92 LDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKAL 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 710 HLSPAHHVAMVNLGRLHRSLGQNKEAEVWYKRALKVS-RKGEILSPLGALYYNTGRYEEALQVYREAASLQPSNkEIRLA 788
Cdd:COG2956   172 KLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDpDYLPALPRLAELYEKLGDPEEALELLRKALELDPSD-DLLLA 250

                         250       260
                  ....*....|....*....|....*
gi 1708953624 789 LAQVLAMMGRTKEAEKMTNHILNED 813
Cdd:COG2956   251 LADLLERKEGLEAALALLERQLRRH 275
TMTC_DUF1736 pfam08409
Protein O-mannosyl-transferase TMTC, DUF1736; This domain of unknown function is found in ...
 358-431 4.08e-37

Protein O-mannosyl-transferase TMTC, DUF1736; This domain of unknown function is found in O-mannosyl -transferases TMTC1-4, and constitutes a loop between TM7 and TM8 located in the ER lumen that contains a small hydrophobic, but not membrane-embedded helix. This loop is critical for catalysis and binding of ligands, especially the lipid-linked sugar moiety. TMTCs transfers mannosyl residues to the hydroxyl group of serine or threonine residues. The 4 members of the TMTC family are O-mannosyl-transferases acting primarily on the cadherin superfamily; each member has distinct roles in decorating the cadherin domains with O-linked mannose glycans at specific regions. These proteins also act as O-mannosyl-transferase on other proteins such as PDIA3.


Pssm-ID: 462468  Cd Length: 75  Bit Score: 133.42  E-value: 4.08e-37
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1708953624 358 GGSMPMFSEQDNPASFSPYLLTRFLTYSYLLAFNAWLLLAPITLCYDWQVGSIPLIESVWDARNLATVFLVLVM 431
Cdd:pfam08409   1 GGQLPVFSASDNPAAFSPSLLTRTLTYNYLPALNAWLLLFPSWLCFDWSMGSIPLIESLSDPRNLATLAFYGAL 74
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 689-944 5.02e-36

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 137.94  E-value: 5.02e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 689 GVFLVDTGAPERAVSHYRQAIHLSPAHHVAMVNLGRLHRSLGQNKEAEVWYKRALKVS-RKGEILSPLGALYYNTGRYEE 767
Cdd:COG2956    15 GLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDpDRAEALLELAQDYLKAGLLDR 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 768 ALQVYREAASLQPSNKEIRLALAQVLAMMGRTKEAEKMTNHILNEDVECLECYRLLSAIYSKQEHYAKALEAIEKALQLK 847
Cdd:COG2956    95 AEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLD 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 848 PKDPKVISELfftkGNQLREQNLLDKAFESYKRAVELNPDQAQAWMNMGGIEHIKGSYITARGYYEKALQLVPNSKLLkE 927
Cdd:COG2956   175 PDCARALLLL----AELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLL-L 249

                         250
                  ....*....|....*..
gi 1708953624 928 NLAKLDRLEKRFQEVQE 944
Cdd:COG2956   250 ALADLLERKEGLEAALA 266
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 540-931 8.90e-32

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 133.67  E-value: 8.90e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 540 SGVKTLPHNAKVHYNYANFLKDQGRNVEAIYHYKTALKLYPRHASALNNLGTL---TKDVVEAKDYYRRALQLNPQHNRA 616
Cdd:TIGR02917 456 KLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIdiqEGNPDDAIQRFEKVLTIDPKNLRA 535

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 617 LFNLGNLLKSQGKKEEAVILLRDSIKYGPEFADAYSSLASLLAEQERLKEAEEVYKAGIENCPESSDLHNNYGVFLVDTG 696
Cdd:TIGR02917 536 ILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAG 615

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 697 APERAVSHYRQAIHLSPAHHVAMVNLGRLHRSLGQNKEAEVWYKRAL---------------------------KVSRKG 749
Cdd:TIGR02917 616 DLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALelkpdnteaqiglaqlllaakrtesakKIAKSL 695

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 750 EILSP--------LGALYYNTGRYEEALQVYREAASLQPSNKE-IRLALAQVLAmmGRTKEAEKMTNHILNEDVECLECY 820
Cdd:TIGR02917 696 QKQHPkaalgfelEGDLYLRQKDYPAAIQAYRKALKRAPSSQNaIKLHRALLAS--GNTAEAVKTLEAWLKTHPNDAVLR 773

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 821 RLLSAIYSKQEHYAKALEAIEKALQLKPKDPKVISELFFTKGNQLREqnlldKAFESYKRAVELNPDQAQAWMNMGGIEH 900
Cdd:TIGR02917 774 TALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKDP-----RALEYAERALKLAPNIPAILDTLGWLLV 848

                         410       420       430
                  ....*....|....*....|....*....|.
gi 1708953624 901 IKGSYITARGYYEKALQLVPNSKLLKENLAK 931
Cdd:TIGR02917 849 EKGEADRALPLLRKAVNIAPEAAAIRYHLAL 879
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 653-918 3.14e-12

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 68.42  E-value: 3.14e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 653 SLASLLAEQERLKEAEEVYKAGIENCPESSDLHNNYGVFLVDTGAPERAVSHYRQAIHLSPAH-HVAMVNLGRLHrslgQ 731
Cdd:cd24142     5 EKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGgYEKYLYLGQLS----G 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 732 NKEAEVWYKRALkvsrkgEILsplgalyyntgryEEALQVYREAASLQPSN-KEIRLALAQVLAMMGR---T-------- 799
Cdd:cd24142    81 GEEALQYYEKGI------EIL-------------EEELQALQAASAEAEEEaEELKRKLSSALCALAEiymTdlcdepda 141

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 800 -KEAEKMTNHILNEDVECLECYRLLSAIYSKQEHYAKALEAIEKALQL-KPKDPKVISELFFTKGN-------QLR---- 866
Cdd:cd24142   142 eQRCEELITKALELDPTNPEALQTLASLRISQQRPDEAKEALRRSLELwKDLKEEDEEEAEEDEAEeedvpsyEFRisla 221

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1708953624 867 ----EQNLLDKAFESYKRAVELNPDQAQAW-------MNMG--GIEHIKGSYITARGYYEKALQL 918
Cdd:cd24142   222 klliELEMYEEALEVLEQLLDEDDEDVEVWyllgwayYLLGekEQEEAAELLRDARELLEKALKL 286
TPR_19 pfam14559
Tetratricopeptide repeat;
763-826 2.00e-10

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 57.21  E-value: 2.00e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1708953624 763 GRYEEALQVYREAASLQPSNKEIRLALAQVLAMMGRTKEAEKMTNHILNEDVECLECYRLLSAI 826
Cdd:pfam14559   2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLAKL 65
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 561-922 2.04e-09

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 61.64  E-value: 2.04e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624  561 DQGRNVEAIYHYKTALKLYPRHASALNNLG---TLTKDVVEAKDYYRRALQLNPQHNralfnlgNLLKSQGkkeeavilL 637
Cdd:PRK11447   281 DSGQGGKAIPELQQAVRANPKDSEALGALGqaySQQGDRARAVAQFEKALALDPHSS-------NRDKWES--------L 345

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624  638 RDSIKYGPEFADAYSSLasllaEQERLKEAEEVYKAGiencpESSDLHNNYGVFLV--------DTGAPERavsHYRQAI 709
Cdd:PRK11447   346 LKVNRYWLLIQQGDAAL-----KANNLAQAERLYQQA-----RQVDNTDSYAVLGLgdvamarkDYAAAER---YYQQAL 412

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624  710 HLSPAHHVAMVNLGRLHRSlgQNKEAEVWYKRALKVSRKGEILSPLGAL-----------YYNTGRYEEALQVYREAASL 778
Cdd:PRK11447   413 RMDPGNTNAVRGLANLYRQ--QSPEKALAFIASLSASQRRSIDDIERSLqndrlaqqaeaLENQGKWAQAAELQRQRLAL 490

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624  779 QPSNKEIRLALAQVLAMMGRTKEAE----KMTNHILNeDVECLECYRL-LSAiySKQEHYAKA-LEAIEKAlQLKPK--- 849
Cdd:PRK11447   491 DPGSVWLTYRLAQDLRQAGQRSQADalmrRLAQQKPN-DPEQVYAYGLyLSG--SDRDRAALAhLNTLPRA-QWNSNiqe 566

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624  850 -DPKVISELFFTKGNQLREQNLLDKAfESYKRAVELNP-------DQAQAwmnmggiehiKGSYITARGYYEKALQLVPN 921
Cdd:PRK11447   567 lAQRLQSDQVLETANRLRDSGKEAEA-EALLRQQPPSTridltlaDWAQQ----------RGDYAAARAAYQRVLTREPG 635


                   .
gi 1708953624  922 S 922
Cdd:PRK11447   636 N 636
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 833-931 2.52e-09

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 57.37  E-value: 2.52e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 833 YAKALEAIEKALQLKpKDPKVISELFFTKGNQLREQNLLDKAFESYKRAVELNPDQAQAWMNMGGIEHIKGSYITARG-- 910
Cdd:PRK02603   51 YAEALENYEEALKLE-EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGdq 129

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1708953624 911 ------------YYEKALQLVPNSKLLKENLAK 931
Cdd:PRK02603  130 deaealfdkaaeYWKQAIRLAPNNYIEAQNWLK 162
gliding_GltE NF033758
adventurous gliding motility TPR repeat lipoprotein GltE; GltE (also called AglT) is a ...
 603-918 2.56e-07

adventurous gliding motility TPR repeat lipoprotein GltE; GltE (also called AglT) is a tetratricopeptide repeat protein with a lipoprotein signal peptide and a role in A-motility (adventurous gliding motility) in Myxococcus xanthus and other delta-proteobacteria.


Pssm-ID: 468174 [Multi-domain]  Cd Length: 411  Bit Score: 54.06  E-value: 2.56e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 603 YRRALQLNPQHNRALFNLGNLLKSQGKKEEAVILLRDSIKYGPEFADAYSSLASLLAEQERLKEAEEVYKAGIENCPESS 682
Cdd:NF033758   75 FKAALEADPNLAEAEYNLGVLAERQGKTDEAVARYKAALKKKPTLRQASENLAVMAQNAGDVAGAVALYQDVLKRYPDDA 154

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 683 DLHNNYGVFLVDTGAPERAVSHYRQAIHLSPAHHVAMVNLGRLHRSLGQNKEAEVWYKRALKV-SRKGEILSPLGALYYN 761
Cdd:NF033758  155 SSRARLAEIYRQTGDHDKAMELSRAALMRDPQSTTALKVMMRSYLDRKQLAMAKLVALRAVKIdQNDPELHHTVGLILLQ 234

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 762 TGRYEEALQVYREAASLQPSNKEIRLALAQvLAMmgrtkeaekmtnhilnedveclecyrllsaiysKQEHYAKALEAIE 841
Cdd:NF033758  235 EGDKDGARLQFKRALEVRADYVPSHVELAQ-LAL---------------------------------DAEDYPGAEEHLR 280

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1708953624 842 KALQLKPKDPKVISELfftkGNQLREQNLLDKAFESYKRAVELNPDQAQAWMNMGGIEHikgsyiTARGYYEKALQL 918
Cdd:NF033758  281 RILQADGKNAAAHLNL----GVAYKGQGQYDKAMQEYDEAEKLDPELAAIYLNRAIILH------RVKDAPERAVEL 347
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 579-805 1.25e-05

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 49.15  E-value: 1.25e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 579 YPRHASALNNLG---TLTKDVVEAKDYYRRALQ-----LNPQHNRALFNLGNL---LKSQGKKEEAVILLRDSIKY---- 643
Cdd:NF040586  516 HPRTLRAANNLAvslRLLGDYREALELDREVLRrrrrvLGPDHPRTLLSANNLardLRELGRYAEALDLLEEALERyrev 595

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 644 --GPEFAD---AYSSLA-SL-----LAEQERLkeAEEVYKA-----GIENcPESSDLHNNYGVFLVDTGAPERA------ 701
Cdd:NF040586  596 lgGPDHPDtlrAAKSLAvALrragrLEEALEL--AEDTYERyrrrfGPDH-PDTLAAALSLANDLRALGDADEArelare 672

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 702 -VSHYRQAIHLS-PAHHVAMVNLGRLHRSLGQNKEAEVWYKRALkvSRKGEILSP-----------LGALYYNTGRYEEA 768
Cdd:NF040586  673 vLDRYRRVLGEDhPFTLACRNNLAVLLRALGDPEEARELAEAAL--EGLRERLGPdhpytlaaavnLANDLAALGDLDAA 750

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*....
gi 1708953624 769 L--------QVYREAASLQPSNKEIRLA----LAQVLAMMGRTKEAEKM 805
Cdd:NF040586  751 LgeealerlRRLLGEDLRAGPDHPDTLAcaanLALDLRATGRTEEAEEL 799
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 611-821 1.44e-05

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 49.15  E-value: 1.44e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 611 PQHNRALFNLGNLLKSQGKKEEAVIL-------LRDSIKYGPEFADAYSSLASLLAE-------QERLKEAEEVY----K 672
Cdd:NF040586  431 RQTLRLRFHLANALRSLGRYEEARELdedtlerQRRVLGLGEDHPHTLMTAGGLGADlralgrfREALELDEETLerhrR 510

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 673 AGIENCPESSDLHNNYGVFLVDTGAPERA------VSHYRQAIhLSPAHH---VAMVNLGRLHRSLGQNKEA----EVWY 739
Cdd:NF040586  511 VFGEDHPRTLRAANNLAVSLRLLGDYREAleldreVLRRRRRV-LGPDHPrtlLSANNLARDLRELGRYAEAldllEEAL 589

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 740 KRALKVSRKGEILSPLGAL------YYNTGRYEEALQVYREAAS-----LQPSNKE---IRLALAQVLAMMGRTKEAEKM 805
Cdd:NF040586  590 ERYREVLGGPDHPDTLRAAkslavaLRRAGRLEEALELAEDTYEryrrrFGPDHPDtlaAALSLANDLRALGDADEAREL 669

                         250
                  ....*....|....*.
gi 1708953624 806 TNhilnedvECLECYR 821
Cdd:NF040586  670 AR-------EVLDRYR 678
TPR_11 pfam13414
TPR repeat;
862-896 4.40e-05

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 41.30  E-value: 4.40e-05
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1708953624 862 GNQLREQNLLDKAFESYKRAVELNPDQAQAWMNMG 896
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLG 35
Mgr3-like cd24145
Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; ...
 757-927 2.43e-04

Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; Mgr3 (also called mitochondrial genome-required protein 3) is a component of the mitochondrial inner membrane i-AAA protease supercomplex, which degrades misfolded mitochondrial proteins. The supercomplex is composed of Mgr1, Mgr3, and Yme1. Mgr3, together with Mgr1, functions in an adapter complex that targets substrates to the i-AAA protease for degradation.


Pssm-ID: 467945 [Multi-domain]  Cd Length: 307  Bit Score: 44.26  E-value: 2.43e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 757 ALYYNTGR--YEEALQVYREAasLQPSNKE-----------IRLALAQVLAMMGRTKEAEKMTNHILNEdveCLEcyRLL 823
Cdd:cd24145    14 ALYYESDKpdPQKALKYYKEA--LEQADELgmdpfsdevtgIRIKIAEMLEKLGMYKAAYEVLERLYLD---CLR--WTL 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 824 SAIYSKQEHYakaleaIEKALQLKPKdpkvISELffTKGNQLREQNLLDKAfesYKRAVELNPDQAQAWMNMGGIEHIKG 903
Cdd:cd24145    87 KDDESERGHL------IKRDLRISIK----LGEL--NKDSELGKWELRERL---LKKAVEILLKLGELWMSPSEVGAFLE 151

                         170       180
                  ....*....|....*....|....*..
gi 1708953624 904 SYITAR---GYYEKALQLVPNSKLLKE 927
Cdd:cd24145   152 ELATAYdlyGRFCLALPLYMQALSLKG 178
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 755-782 1.61e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 36.66  E-value: 1.61e-03
                           10        20
                   ....*....|....*....|....*...
gi 1708953624  755 LGALYYNTGRYEEALQVYREAASLQPSN 782
Cdd:smart00028   7 LGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 818-850 5.24e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 35.50  E-value: 5.24e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 1708953624  818 ECYRLLSAIYSKQEHYAKALEAIEKALQLKPKD 850
Cdd:smart00028   2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
 
Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 553-813 1.49e-41

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 153.73  E-value: 1.49e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 553 YNYANFLKDQGRNVEAIYHYKTALKLYPRHASALNNLGTL---TKDVVEAKDYYRRALQLNPQHNRALFNLGNLLKSQGK 629
Cdd:COG2956    12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLyrrRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 630 KEEAVILLRDSIKYGPEFADAYSSLASLLAEQERLKEAEEVYKAGIENCPESSDLHNNYGVFLVDTGAPERAVSHYRQAI 709
Cdd:COG2956    92 LDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKAL 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 710 HLSPAHHVAMVNLGRLHRSLGQNKEAEVWYKRALKVS-RKGEILSPLGALYYNTGRYEEALQVYREAASLQPSNkEIRLA 788
Cdd:COG2956   172 KLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDpDYLPALPRLAELYEKLGDPEEALELLRKALELDPSD-DLLLA 250

                         250       260
                  ....*....|....*....|....*
gi 1708953624 789 LAQVLAMMGRTKEAEKMTNHILNED 813
Cdd:COG2956   251 LADLLERKEGLEAALALLERQLRRH 275
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 598-845 8.07e-38

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 142.95  E-value: 8.07e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 598 EAKDYYRRALQLNPQHNRALFNLGNLLKSQGKKEEAVILLRDSIKYGPEFADAYSSLASLLAEQERLKEAEEVYKAGIEN 677
Cdd:COG2956    26 KAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLEL 105

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 678 CPESSDLHNNYGVFLVDTGAPERAVSHYRQAIHLSPAHHVAMVNLGRLHRSLGQNKEAEVWYKRALKVSRK-GEILSPLG 756
Cdd:COG2956   106 DPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDcARALLLLA 185

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 757 ALYYNTGRYEEALQVYREAASLQPSNKEIRLALAQVLAMMGRTKEAEKMTNHILNEDVECLEcYRLLSAIYSKQEHYAKA 836
Cdd:COG2956   186 ELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDL-LLALADLLERKEGLEAA 264


                  ....*....
gi 1708953624 837 LEAIEKALQ 845
Cdd:COG2956   265 LALLERQLR 273
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 537-775 2.05e-37

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 141.79  E-value: 2.05e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 537 LFSSGVKTLPHNAKVHYNYANFLKDQGRNVEAIYHYKTALKLYPRHASALNNLGTL---TKDVVEAKDYYRRALQLNPQH 613
Cdd:COG2956    30 LLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDylkAGLLDRAEELLEKLLELDPDD 109

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 614 NRALFNLGNLLKSQGKKEEAVILLRDSIKYGPEFADAYSSLASLLAEQERLKEAEEVYKAGIENCPESSDLHNNYGVFLV 693
Cdd:COG2956   110 AEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYL 189

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 694 DTGAPERAVSHYRQAIHLSPAHHVAMVNLGRLHRSLGQNKEAEVWYKRALKVSRKGEILSPLGALYYNTGRYEEALQVYR 773
Cdd:COG2956   190 EQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGLEAALALLE 269


                  ..
gi 1708953624 774 EA 775
Cdd:COG2956   270 RQ 271
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
576-813 3.54e-37

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 140.14  E-value: 3.54e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 576 LKLYPRHASALNNLGTL---TKDVVEAKDYYRRALQLNPQHNRALFNLGNLLKSQGKKEEAVILLRDSIKYGPEFADAYS 652
Cdd:COG0457     1 LELDPDDAEAYNNLGLAyrrLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 653 SLASLLAEQERLKEAEEVYKAGIENCPESSDLHNNYGVFLVDTGAPERAVSHYRQAIHLSPAHHVAMVNLGRLHRSLGQN 732
Cdd:COG0457    81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 733 KEAEVWYKRALKVSRKGEILSPLGALYYNTGRYEEALQVYREAASLQPSNKEIRLALAQVLAMMGRTKEAEKMTNHILNE 812
Cdd:COG0457   161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALAL 240


                  .
gi 1708953624 813 D 813
Cdd:COG0457   241 Y 241
TMTC_DUF1736 pfam08409
Protein O-mannosyl-transferase TMTC, DUF1736; This domain of unknown function is found in ...
 358-431 4.08e-37

Protein O-mannosyl-transferase TMTC, DUF1736; This domain of unknown function is found in O-mannosyl -transferases TMTC1-4, and constitutes a loop between TM7 and TM8 located in the ER lumen that contains a small hydrophobic, but not membrane-embedded helix. This loop is critical for catalysis and binding of ligands, especially the lipid-linked sugar moiety. TMTCs transfers mannosyl residues to the hydroxyl group of serine or threonine residues. The 4 members of the TMTC family are O-mannosyl-transferases acting primarily on the cadherin superfamily; each member has distinct roles in decorating the cadherin domains with O-linked mannose glycans at specific regions. These proteins also act as O-mannosyl-transferase on other proteins such as PDIA3.


Pssm-ID: 462468  Cd Length: 75  Bit Score: 133.42  E-value: 4.08e-37
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1708953624 358 GGSMPMFSEQDNPASFSPYLLTRFLTYSYLLAFNAWLLLAPITLCYDWQVGSIPLIESVWDARNLATVFLVLVM 431
Cdd:pfam08409   1 GGQLPVFSASDNPAAFSPSLLTRTLTYNYLPALNAWLLLFPSWLCFDWSMGSIPLIESLSDPRNLATLAFYGAL 74
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 618-885 3.39e-36

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 138.32  E-value: 3.39e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 618 FNLGNLLKSQGKKEEAVILLRDSIKYGPEFADAYSSLASLLAEQERLKEAEEVYKAGIENCPESSDLHNNYGVFLVDTGA 697
Cdd:COG2956    12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 698 PERAVSHYRQAIHLSPAHHVAMVNLGRLHRSLGQNKEAEVWYKRALKVSRK-GEILSPLGALYYNTGRYEEALQVYREAA 776
Cdd:COG2956    92 LDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPEnAHAYCELAELYLEQGDYDEAIEALEKAL 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 777 SLQPSNKEIRLALAQVLAMMGRTKEAEKMTNHILNEDVECLECYRLLSAIYSKQEHYAKALEAIEKALQLKPKDPkvise 856
Cdd:COG2956   172 KLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDD----- 246

                         250       260
                  ....*....|....*....|....*....
gi 1708953624 857 LFFTKGNQLREQNLLDKAFESYKRAVELN 885
Cdd:COG2956   247 LLLALADLLERKEGLEAALALLERQLRRH 275
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 689-944 5.02e-36

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 137.94  E-value: 5.02e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 689 GVFLVDTGAPERAVSHYRQAIHLSPAHHVAMVNLGRLHRSLGQNKEAEVWYKRALKVS-RKGEILSPLGALYYNTGRYEE 767
Cdd:COG2956    15 GLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDpDRAEALLELAQDYLKAGLLDR 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 768 ALQVYREAASLQPSNKEIRLALAQVLAMMGRTKEAEKMTNHILNEDVECLECYRLLSAIYSKQEHYAKALEAIEKALQLK 847
Cdd:COG2956    95 AEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLD 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 848 PKDPKVISELfftkGNQLREQNLLDKAFESYKRAVELNPDQAQAWMNMGGIEHIKGSYITARGYYEKALQLVPNSKLLkE 927
Cdd:COG2956   175 PDCARALLLL----AELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLL-L 249

                         250
                  ....*....|....*..
gi 1708953624 928 NLAKLDRLEKRFQEVQE 944
Cdd:COG2956   250 ALADLLERKEGLEAALA 266
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
546-778 8.79e-36

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 136.29  E-value: 8.79e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 546 PHNAKVHYNYANFLKDQGRNVEAIYHYKTALKLYPRHASALNNLGTL---TKDVVEAKDYYRRALQLNPQHNRALFNLGN 622
Cdd:COG0457     5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAylrLGRYEEALADYEQALELDPDDAEALNNLGL 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 623 LLKSQGKKEEAVILLRDSIKYGPEFADAYSSLASLLAEQERLKEAEEVYKAGIENCPESSDLHNNYGVFLVDTGAPERAV 702
Cdd:COG0457    85 ALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEAL 164

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1708953624 703 SHYRQAIHLSPAHHVAMVNLGRLHRSLGQNKEAEVWYKRALKVSRKGEILSPLGALYYNTGRYEEALQVYREAASL 778
Cdd:COG0457   165 ELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALAL 240
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
607-847 2.76e-35

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 134.75  E-value: 2.76e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 607 LQLNPQHNRALFNLGNLLKSQGKKEEAVILLRDSIKYGPEFADAYSSLASLLAEQERLKEAEEVYKAGIENCPESSDLHN 686
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 687 NYGVFLVDTGAPERAVSHYRQAIHLSPAHHVAMVNLGRLHRSLGQNKEAEVWYKRALKVSRK-GEILSPLGALYYNTGRY 765
Cdd:COG0457    81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDdADALYNLGIALEKLGRY 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 766 EEALQVYREAASLQPSNKEIRLALAQVLAMMGRTKEAEKMTNHILNEDVECLECYRLLSAIYSKQEHYAKALEAIEKALQ 845
Cdd:COG0457   161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALAL 240


                  ..
gi 1708953624 846 LK 847
Cdd:COG0457   241 YQ 242
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 722-944 2.31e-34

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 132.93  E-value: 2.31e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 722 LGRLHRSLGQNKEAEVWYKRALKVSRK-GEILSPLGALYYNTGRYEEALQVYREAASLQPSNKEIRLALAQVLAMMGRTK 800
Cdd:COG2956    14 KGLNYLLNGQPDKAIDLLEEALELDPEtVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLD 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 801 EAEKMTNHILNEDVECLECYRLLSAIYSKQEHYAKALEAIEKALQLKPKDPKVISELfftkGNQLREQNLLDKAFESYKR 880
Cdd:COG2956    94 RAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCEL----AELYLEQGDYDEAIEALEK 169

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1708953624 881 AVELNPDQAQAWMNMGGIEHIKGSYITARGYYEKALQLVPNSKLLKENLAKLDRLEKRFQEVQE 944
Cdd:COG2956   170 ALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALE 233
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 540-931 8.90e-32

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 133.67  E-value: 8.90e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 540 SGVKTLPHNAKVHYNYANFLKDQGRNVEAIYHYKTALKLYPRHASALNNLGTL---TKDVVEAKDYYRRALQLNPQHNRA 616
Cdd:TIGR02917 456 KLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIdiqEGNPDDAIQRFEKVLTIDPKNLRA 535

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 617 LFNLGNLLKSQGKKEEAVILLRDSIKYGPEFADAYSSLASLLAEQERLKEAEEVYKAGIENCPESSDLHNNYGVFLVDTG 696
Cdd:TIGR02917 536 ILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAG 615

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 697 APERAVSHYRQAIHLSPAHHVAMVNLGRLHRSLGQNKEAEVWYKRAL---------------------------KVSRKG 749
Cdd:TIGR02917 616 DLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALelkpdnteaqiglaqlllaakrtesakKIAKSL 695

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 750 EILSP--------LGALYYNTGRYEEALQVYREAASLQPSNKE-IRLALAQVLAmmGRTKEAEKMTNHILNEDVECLECY 820
Cdd:TIGR02917 696 QKQHPkaalgfelEGDLYLRQKDYPAAIQAYRKALKRAPSSQNaIKLHRALLAS--GNTAEAVKTLEAWLKTHPNDAVLR 773

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 821 RLLSAIYSKQEHYAKALEAIEKALQLKPKDPKVISELFFTKGNQLREqnlldKAFESYKRAVELNPDQAQAWMNMGGIEH 900
Cdd:TIGR02917 774 TALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKDP-----RALEYAERALKLAPNIPAILDTLGWLLV 848

                         410       420       430
                  ....*....|....*....|....*....|.
gi 1708953624 901 IKGSYITARGYYEKALQLVPNSKLLKENLAK 931
Cdd:TIGR02917 849 EKGEADRALPLLRKAVNIAPEAAAIRYHLAL 879
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 567-773 6.18e-31

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 130.11  E-value: 6.18e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 567 EAIYHYKTALKLYPRHASALNNLGtltkDVVEAKDYYRRALQLNPQHNRALFNLGNLLKSQGKKEEAVILLRDSIKYGPE 646
Cdd:COG3914    69 AAAAALLLLAALLELAALLLQALG----RYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPD 144

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 647 FADAYSSLASLLAEQERLKEAEEVYKAGIENCPESSDLHNNYGVFLVDTGAPERAVSHYRQAIHLSPAHHVAMVNLGRLH 726
Cdd:COG3914   145 FAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFAL 224

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1708953624 727 RSLGQNKEAEVWYKRALKVSRKGEILSPLGALYYNTGRYEEALQVYR 773
Cdd:COG3914   225 RQACDWEVYDRFEELLAALARGPSELSPFALLYLPDDDPAELLALAR 271
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 535-941 4.34e-29

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 125.20  E-value: 4.34e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 535 ESLFSSGVKTLPHNAKVHYNYANFLKDQGRNVEAIYHYKTALKLYPRHASALNNLGTL---TKDVVEAKDYYRRALQLNP 611
Cdd:TIGR02917 315 YQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAylaLGDFEKAAEYLAKATELDP 394

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 612 QHNRALFNLGNLLKSQGKKEEAVILLRDSIKYGPEFADAYSSLASLLAEQERLKEAEEVYKAGIENCPESSDLHNNYGVF 691
Cdd:TIGR02917 395 ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAI 474

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 692 LVDTGAPERAVSHYRQAIHLSPAHHVAMVNLGRLHRSLGQNKEAEVWYKRALKVSRKG-EILSPLGALYYNTGRYEEALQ 770
Cdd:TIGR02917 475 YLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNlRAILALAGLYLRTGNEEEAVA 554

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 771 VYREAASLQPSNKEIRLALAQVLAMMGRTKeaekmtnhilnedveclecyrllsaiyskqehyaKALEAIEKALQLKPKD 850
Cdd:TIGR02917 555 WLEKAAELNPQEIEPALALAQYYLGKGQLK----------------------------------KALAILNEAADAAPDS 600

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 851 PkvisELFFTKGNQLREQNLLDKAFESYKRAVELNPDQAQAWMNMGGIEHIKGSYITARGYYEKALQLVPNSKLLKENLA 930
Cdd:TIGR02917 601 P----EAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLA 676

                         410
                  ....*....|.
gi 1708953624 931 KLDRLEKRFQE 941
Cdd:TIGR02917 677 QLLLAAKRTES 687
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
755-938 5.64e-29

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 116.26  E-value: 5.64e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 755 LGALYYNTGRYEEALQVYREAASLQPSNKEIRLALAQVLAMMGRTKEAEKMTNHILNEDVECLECYRLLSAIYSKQEHYA 834
Cdd:COG0457    14 LGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYE 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 835 KALEAIEKALQLKPKDPkvisELFFTKGNQLREQNLLDKAFESYKRAVELNPDQAQAWMNMGGIEHIKGSYITARGYYEK 914
Cdd:COG0457    94 EALEDYDKALELDPDDA----EALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEK 169

                         170       180
                  ....*....|....*....|....
gi 1708953624 915 ALQLVPNSKLLKENLAKLDRLEKR 938
Cdd:COG0457   170 LEAAALAALLAAALGEAALALAAA 193
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
675-891 1.90e-28

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 115.10  E-value: 1.90e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 675 IENCPESSDLHNNYGVFLVDTGAPERAVSHYRQAIHLSPAHHVAMVNLGRLHRSLGQNKEAEVWYKRALKV-SRKGEILS 753
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELdPDDAEALN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 754 PLGALYYNTGRYEEALQVYREAASLQPSNKEIRLALAQVLAMMGRTKEAEKMTNHILNEDVECLECYRLLSAIYSKQEHY 833
Cdd:COG0457    81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1708953624 834 AKALEAIEKALQLKPKDPKVISELFFTKGNQLREQNLLDKAFESYKRAVELNPDQAQA 891
Cdd:COG0457   161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAA 218
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 561-922 1.15e-26

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 117.49  E-value: 1.15e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 561 DQGRNVEAIYHYKTALKLYPRHASALNNLGT---LTKDVVEAKDYYRRALQLNPQHNRALFNLGNLLKSQGKKEEAVILL 637
Cdd:TIGR02917 443 RSGQFDKALAAAKKLEKKQPDNASLHNLLGAiylGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRF 522

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 638 RDSIKYGPEFADAYSSLASLLAEQERLKEAEEVYKAGIENCPESSDLHNNYGVFLVDTGAPERAVSHYRQAIHLSPAHHV 717
Cdd:TIGR02917 523 EKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPE 602

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 718 AMVNLGRLHRSLGQNKEAEVWYKRALKV-SRKGEILSPLGALYYNTGRYEEALQVYREAASLQPSNKEIRLALAQVLAMM 796
Cdd:TIGR02917 603 AWLMLGRAQLAAGDLNKAVSSFKKLLALqPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAA 682

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 797 GRTKEAEKMTNHILNEDVECLECYRLLSAIYSKQEHYAKALEAIEKALQLKPKDPKVI---SELFFTKGNQ--------- 864
Cdd:TIGR02917 683 KRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIklhRALLASGNTAeavktleaw 762

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1708953624 865 LRE-----------------QNLLDKAFESYKRAVELNPDQAQAWMNMGGIEHiKGSYITARGYYEKALQLVPNS 922
Cdd:TIGR02917 763 LKThpndavlrtalaelylaQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYL-ELKDPRALEYAERALKLAPNI 836
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 545-809 4.76e-26

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 114.71  E-value: 4.76e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 545 LPHNAKVHYNYANFLKDQGRNVEAIYHYKTALKLYPRHASALNNLGTLTKDVVE---AKDYYRRALQLNPQHNRALFNLG 621
Cdd:COG3914     6 LLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALlalAAGEAAAAAAALLLLAALLELAA 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 622 NLLKSQGKKEEAVILLRDSIKYGPEFADAYSSLASLLAEQERLKEAEEVYKAGIENCPESSDLHNNYGVFLVDTGAPERA 701
Cdd:COG3914    86 LLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEA 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 702 VSHYRQAIHLSPAHHVAMVNLGRLHRSLgqnkeaevwykralkvsrkgeilsplgalyyntGRYEEALQVYREAASLQPS 781
Cdd:COG3914   166 IAALRRALELDPDNAEALNNLGNALQDL---------------------------------GRLEEAIAAYRRALELDPD 212

                         250       260
                  ....*....|....*....|....*...
gi 1708953624 782 NKEIRLALAQVLAMMGRTKEAEKMTNHI 809
Cdd:COG3914   213 NADAHSNLLFALRQACDWEVYDRFEELL 240
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
777-941 6.02e-25

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 104.70  E-value: 6.02e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 777 SLQPSNKEIRLALAQVLAMMGRTKEAEKMTNHILNEDVECLECYRLLSAIYSKQEHYAKALEAIEKALQLKPKDPkvisE 856
Cdd:COG0457     2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDA----E 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 857 LFFTKGNQLREQNLLDKAFESYKRAVELNPDQAQAWMNMGGIEHIKGSYITARGYYEKALQLVPNSKLLKENLAKLDRLE 936
Cdd:COG0457    78 ALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKL 157


                  ....*
gi 1708953624 937 KRFQE 941
Cdd:COG0457   158 GRYEE 162
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 535-710 8.02e-25

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 105.20  E-value: 8.02e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 535 ESLFSSGVKTLPHNAKVHYNYANFLKDQGRNVEAIYHYKTALKLYPRHASALNNLGTL---TKDVVEAKDYYRRALQLNP 611
Cdd:COG2956    96 EELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELyleQGDYDEAIEALEKALKLDP 175

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 612 QHNRALFNLGNLLKSQGKKEEAVILLRDSIKYGPEFADAYSSLASLLAEQERLKEAEEVYKAGIENCPeSSDLHNNYGVF 691
Cdd:COG2956   176 DCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDP-SDDLLLALADL 254

                         170
                  ....*....|....*....
gi 1708953624 692 LVDTGAPERAVSHYRQAIH 710
Cdd:COG2956   255 LERKEGLEAALALLERQLR 273
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 533-938 9.56e-25

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 111.33  E-value: 9.56e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 533 SRESLFSSGVKTLphnakvhynyanflkDQGRNVEAIYHYKTALKLYPRHASALNNLGTL---TKDVVEAKDYYRRALQL 609
Cdd:TIGR02917  21 SPEELIEAAKSYL---------------QKNKYKAAIIQLKNALQKDPNDAEARFLLGKIylaLGDYAAAEKELRKALSL 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 610 NPQHNRALFNLGNLLKSQGK-----------------------------------KEEAVILLRDSIKYGPEFADAYSSL 654
Cdd:TIGR02917  86 GYPKNQVLPLLARAYLLQGKfqqvldelpgktllddegaaellalrglaylglgqLELAQKSYEQALAIDPRSLYAKLGL 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 655 ASLLAEQERLKEAEEVYKAGIENCPESSDLHNNYGVFLVDTGAPERAVSHYRQAIHLSPAHHVAMVNLGRLHRSLGQNKE 734
Cdd:TIGR02917 166 AQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEE 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 735 AEVW---------------YKRALKVSRKGEILSPL--------------------GALYYNTGRYEEALQVYREAASLQ 779
Cdd:TIGR02917 246 AEKHadallkkapnsplahYLKALVDFQKKNYEDARetlqdalksapeylpalllaGASEYQLGNLEQAYQYLNQILKYA 325

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 780 PSNKEIRLALAQVLAMMGRTKEAEKMTNHILNEDVECLECYRLLSAIYSKQEHYAKALEAIEKALQLKPKDPKVISELFF 859
Cdd:TIGR02917 326 PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGI 405

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 860 TK--GNQLRE----------------------------QNLLDKAFESYKRAVELNPDQAQAWMNMGGIEHIKGSYITAR 909
Cdd:TIGR02917 406 SKlsQGDPSEaiadletaaqldpelgradlllilsylrSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAR 485

                         490       500
                  ....*....|....*....|....*....
gi 1708953624 910 GYYEKALQLVPNSKLLKENLAKLDRLEKR 938
Cdd:TIGR02917 486 EAFEKALSIEPDFFPAAANLARIDIQEGN 514
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 535-932 2.18e-24

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 110.17  E-value: 2.18e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 535 ESLFSSGVKTLPHNAKVHYNYANFLKDQGRNVEAIYHYKTALKLYPRHASALNNLGTL---TKDVVEAKDYYRRALQLNP 611
Cdd:TIGR02917 145 QKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLllsLGNIELALAAYRKAIALRP 224

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 612 QHNRALFNLGNLLKSQGKKEEAVILLRDSIKYGPEfadaySSLASLLAEQERLKEAEevYKAGIENCPESSDLHNNY--- 688
Cdd:TIGR02917 225 NNIAVLLALATILIEAGEFEEAEKHADALLKKAPN-----SPLAHYLKALVDFQKKN--YEDARETLQDALKSAPEYlpa 297

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 689 ----GVFLVDTGAPERAVSHYRQAIHLSPAHHVAMVNLGRLHRSLGQNKEAEVWYKRAL-KVSRKGEILSPLGALYYNTG 763
Cdd:TIGR02917 298 lllaGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALgLDPDDPAALSLLGEAYLALG 377

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 764 RYEEALQVYREAASLQPSNKEIRLALAQVLAMMGRTKEAEKMTNHILNEDVECLECYRLLSAIYSKQEHYAKALEAIEKA 843
Cdd:TIGR02917 378 DFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKL 457

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 844 LQLKPKDPkvisELFFTKGNQLREQNLLDKAFESYKRAVELNPDQAQAWMNMGGIEHIKGSYITARGYYEKALQLVPNSK 923
Cdd:TIGR02917 458 EKKQPDNA----SLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNL 533


                  ....*....
gi 1708953624 924 LLKENLAKL 932
Cdd:TIGR02917 534 RAILALAGL 542
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 546-922 2.59e-24

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 109.79  E-value: 2.59e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 546 PHNAKVHYNYANFLKDQGRNVEAIYHYKTALKLYPRHASALNNLGTLT---KDVVEAKDYYRRALQLNPQHNRALFNLGN 622
Cdd:TIGR02917 224 PNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDfqkKNYEDARETLQDALKSAPEYLPALLLAGA 303

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 623 LLKSQGKKEEAVILLRDSIKYGPEFADAYSSLASLLAEQERLKEA----------------------------------- 667
Cdd:TIGR02917 304 SEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAiatlspalgldpddpaalsllgeaylalgdfekaa 383

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 668 EEVYKAGiENCPESSDLHNNYGVFLVDTGAPERAVSHYRQAIHLSPahhvamvNLGRLHRSLG----QNKEAevwyKRAL 743
Cdd:TIGR02917 384 EYLAKAT-ELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDP-------ELGRADLLLIlsylRSGQF----DKAL 451

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 744 KVSRKGEILSP--------LGALYYNTGRYEEALQVYREAASLQPSNKEIRLALAQVLAMMGRTKEAEKMTNHILNEDVE 815
Cdd:TIGR02917 452 AAAKKLEKKQPdnaslhnlLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK 531

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 816 CLECYRLLSAIYSKQEHYAKALEAIEKALQLKPKDpkviSELFFTKGNQLREQNLLDKAFESYKRAVELNPDQAQAWMNM 895
Cdd:TIGR02917 532 NLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQE----IEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLML 607

                         410       420
                  ....*....|....*....|....*..
gi 1708953624 896 GGIEHIKGSYITARGYYEKALQLVPNS 922
Cdd:TIGR02917 608 GRAQLAAGDLNKAVSSFKKLLALQPDS 634
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 718-850 3.57e-23

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 96.03  E-value: 3.57e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 718 AMVNLGRLHRSLGQNKEAEVWYKRALKVSRK-GEILSPLGALYYNTGRYEEALQVYREAASLQPSNKEIRLALAQVLAMM 796
Cdd:COG4783     6 ALYALAQALLLAGDYDEAEALLEKALELDPDnPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKA 85

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1708953624 797 GRTKEAEKMTNHILNEDVECLECYRLLSAIYSKQEHYAKALEAIEKALQLKPKD 850
Cdd:COG4783    86 GDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 612-744 4.81e-23

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 95.64  E-value: 4.81e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 612 QHNRALFNLGNLLKSQGKKEEAVILLRDSIKYGPEFADAYSSLASLLAEQERLKEAEEVYKAGIENCPESSDLHNNYGVF 691
Cdd:COG4783     2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA 81

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1708953624 692 LVDTGAPERAVSHYRQAIHLSPAHHVAMVNLGRLHRSLGQNKEAEVWYKRALK 744
Cdd:COG4783    82 LLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALE 134
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 549-681 6.19e-23

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 95.64  E-value: 6.19e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 549 AKVHYNYANFLKDQGRNVEAIYHYKTALKLYPRHASALNNLGTL---TKDVVEAKDYYRRALQLNPQHNRALFNLGNLLK 625
Cdd:COG4783     4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEIllqLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1708953624 626 SQGKKEEAVILLRDSIKYGPEFADAYSSLASLLAEQERLKEAEEVYKAGIENCPES 681
Cdd:COG4783    84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 648-892 1.20e-22

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 103.92  E-value: 1.20e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 648 ADAYSSLASLLAEQERLKEAEEVYKAGIENCPESSDLHNNYGVFLVDTGAPERAVSHYRQAIHLSPAHHVAMVNLGRLHR 727
Cdd:COG3914    10 AALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQ 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 728 SLGQNKEAEVWYKRALKVS-RKGEILSPLGALYYNTGRYEEALQVYREAASLQPSNKEIRLALAQVLAMMGRTKEAEKMT 806
Cdd:COG3914    90 ALGRYEEALALYRRALALNpDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAAL 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 807 NHILNEDVECLECYRLLSAIYSKQEHYAKALEAIEKALQLKPKDPKVISELFFTKGNQLREQNLldKAFESYKRAVELNP 886
Cdd:COG3914   170 RRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVY--DRFEELLAALARGP 247


                  ....*.
gi 1708953624 887 DQAQAW 892
Cdd:COG3914   248 SELSPF 253
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 562-811 7.32e-22

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 102.08  E-value: 7.32e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 562 QGRNVEAIYHYKTALKLYPRHASALNNLG---TLTKDVVEAKDYYRRALQLNPQHNRALFNLGNLLKSQGKKEEAVILLR 638
Cdd:TIGR02917 614 AGDLNKAVSSFKKLLALQPDSALALLLLAdayAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAK 693

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 639 DSIKYGPEFADAYSSLASLLAEQERLKEAEEVYKAGIENCPESSDLHNNYGVFLVDTGAPE------------------- 699
Cdd:TIGR02917 694 SLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEavktleawlkthpndavlr 773

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 700 --------------RAVSHYRQAIHLSPAHHVAMVNLGRLhrsLGQNK--EAEVWYKRALK-VSRKGEILSPLGALYYNT 762
Cdd:TIGR02917 774 talaelylaqkdydKAIKHYQTVVKKAPDNAVVLNNLAWL---YLELKdpRALEYAERALKlAPNIPAILDTLGWLLVEK 850

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*....
gi 1708953624 763 GRYEEALQVYREAASLQPSNKEIRLALAQVLAMMGRTKEAEKMTNHILN 811
Cdd:TIGR02917 851 GEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLLN 899
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 594-715 4.23e-21

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 90.25  E-value: 4.23e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 594 KDVVEAKDYYRRALQLNPQHNRALFNLGNLLKSQGKKEEAVILLRDSIKYGPEFADAYSSLASLLAEQERLKEAEEVYKA 673
Cdd:COG4783    18 GDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEK 97

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1708953624 674 GIENCPESSDLHNNYGVFLVDTGAPERAVSHYRQAIHLSPAH 715
Cdd:COG4783    98 ALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 755-921 9.49e-21

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 97.76  E-value: 9.49e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 755 LGALYYNTGRYEEALQVYREAASLQPSNKEIRLALAQVLAMMGRTKEAEKMTNHILNEDVECLECYRLLSAIYSKQEHYA 834
Cdd:COG3914    50 ALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLE 129

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 835 KALEAIEKALQLKPKDPkvisELFFTKGNQLREQNLLDKAFESYKRAVELNPDQAQAWMNMGGIEHIKGSYITARGYYEK 914
Cdd:COG3914   130 EALAALRRALALNPDFA----EAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRR 205


                  ....*..
gi 1708953624 915 ALQLVPN 921
Cdd:COG3914   206 ALELDPD 212
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 680-804 6.31e-20

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 86.78  E-value: 6.31e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 680 ESSDLHNNYGVFLVDTGAPERAVSHYRQAIHLSPAHHVAMVNLGRLHRSLGQNKEAEVWYKRALKVSRK-GEILSPLGAL 758
Cdd:COG4783     2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDePEARLNLGLA 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1708953624 759 YYNTGRYEEALQVYREAASLQPSNKEIRLALAQVLAMMGRTKEAEK 804
Cdd:COG4783    82 LLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIA 127
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 755-851 1.70e-19

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 85.44  E-value: 1.70e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 755 LGALYYNTGRYEEALQVYREAASLQPSNKEIRLALAQVLAMMGRTKEAEKMTNHILNEDVECLECYRLLSAIYSKQEHYA 834
Cdd:COG4235    23 LGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYA 102

                          90
                  ....*....|....*..
gi 1708953624 835 KALEAIEKALQLKPKDP 851
Cdd:COG4235   103 EAIAAWQKLLALLPADA 119
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 627-790 2.29e-19

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 88.16  E-value: 2.29e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 627 QGKKEEAVILLRDSIKYGPEFADAYSSLASLLAEQERLKEAEEVYKAGIENCPESSDLHNNYGVFLVDTGAPERAVSHYR 706
Cdd:TIGR02521  44 QGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFE 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 707 QAIhLSPAH-HVAMV--NLGRLHRSLGQNKEAEVWYKRALKVSR-KGEILSPLGALYYNTGRYEEALQVYREAASLQPSN 782
Cdd:TIGR02521 124 QAI-EDPLYpQPARSleNAGLCALKAGDFDKAEKYLTRALQIDPqRPESLLELAELYYLRGQYKDARAYLERYQQTYNQT 202

                         170
                  ....*....|...
gi 1708953624 783 KE-----IRLALA 790
Cdd:TIGR02521 203 AEslwlgIRIARA 215
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 755-922 4.55e-19

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 84.47  E-value: 4.55e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 755 LGALYYNTGRYEEALQVYREAASLQPSNKEIRLALAQVLAMMGRtkeaekmtnhilnedveclecyrllsaiyskqehYA 834
Cdd:COG4783    10 LAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGD----------------------------------LD 55

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 835 KALEAIEKALQLKPKDPkvisELFFTKGNQLREQNLLDKAFESYKRAVELNPDQAQAWMNMGGIEHIKGSYITARGYYEK 914
Cdd:COG4783    56 EAIVLLHEALELDPDEP----EARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEK 131


                  ....*...
gi 1708953624 915 ALQLVPNS 922
Cdd:COG4783   132 ALELDPDD 139
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
810-941 4.87e-19

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 87.75  E-value: 4.87e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 810 LNEDVECLECYRLLSAIYSKQEHYAKALEAIEKALQLKPKDPkvisELFFTKGNQLREQNLLDKAFESYKRAVELNPDQA 889
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDA----EALYNLGLAYLRLGRYEEALADYEQALELDPDDA 76

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1708953624 890 QAWMNMGGIEHIKGSYITARGYYEKALQLVPNSKLLKENLAKLDRLEKRFQE 941
Cdd:COG0457    77 EALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDE 128
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 810-932 5.29e-19

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 83.90  E-value: 5.29e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 810 LNEDVECLECYRLLSAIYSKQEHYAKALEAIEKALQLKPKDPKVISELfftkGNQLREQNLLDKAFESYKRAVELNPDQA 889
Cdd:COG4235    10 LAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDL----AEALLAAGDTEEAEELLERALALDPDNP 85

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1708953624 890 QAWMNMGGIEHIKGSYITARGYYEKALQLVPNS---KLLKENLAKL 932
Cdd:COG4235    86 EALYLLGLAAFQQGDYAEAIAAWQKLLALLPADapaRLLEASIAEA 131
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
545-709 1.63e-17

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 82.66  E-value: 1.63e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 545 LPHNAKVHYNYANFLKDQGRNVEAIYHYKTALKLYPRHASALNNLG---TLTKDVVEAKDYYRRALQLNPQHNRALFNLG 621
Cdd:COG4785    69 LPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGlayLLLGDYDAALEDFDRALELDPDYAYAYLNRG 148

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 622 NLLKSQGKKEEAVILLRDSIKYGPEfaDAYSSLASLLAEQErlKEAEEVYKAGIENCPESSDLHNNygvflvdtgaPERA 701
Cdd:COG4785   149 IALYYLGRYELAIADLEKALELDPN--DPERALWLYLAERK--LDPEKALALLLEDWATAYLLQGD----------TEEA 214


                  ....*...
gi 1708953624 702 VSHYRQAI 709
Cdd:COG4785   215 RELFKLAL 222
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 598-714 3.29e-17

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 78.89  E-value: 3.29e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 598 EAKDYYRRALQLNPQHNRALFNLGNLLKSQGKKEEAVILLRDSIKYGPEFADAYSSLASLLAEQERLKEAEEVYKAGIEN 677
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1708953624 678 CPESSDLHNNYGVFLVDTGAPERAVSHYRQAIHLSPA 714
Cdd:COG4235    81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPA 117
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 700-813 3.32e-17

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 78.89  E-value: 3.32e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 700 RAVSHYRQAIHLSPAHHVAMVNLGRLHRSLGQNKEAEVWYKRALKVS-RKGEILSPLGALYYNTGRYEEALQVYREAASL 778
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDpDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1708953624 779 QPSNKEIRLALAQVLAMMGRTKEAEKMTNHILNED 813
Cdd:COG4235    81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 546-660 3.91e-17

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 78.51  E-value: 3.91e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 546 PHNAKVHYNYANFLKDQGRNVEAIYHYKTALKLYPRHASALNNLGTL---TKDVVEAKDYYRRALQLNPQHNRALFNLGN 622
Cdd:COG4235    14 PNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEAllaAGDTEEAEELLERALALDPDNPEALYLLGL 93

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1708953624 623 LLKSQGKKEEAVILLRDSIKYGPEFADAYsSLASLLAE 660
Cdd:COG4235    94 AAFQQGDYAEAIAAWQKLLALLPADAPAR-LLEASIAE 130
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 738-941 4.77e-17

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 85.82  E-value: 4.77e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 738 WYKRALKVSRKGEILSPLGALYYNTGRYEEALQVYREAASLQPSNKEIRLALAQVLAMMGRTKEAEKMTNHILNEDVECL 817
Cdd:COG3914     4 AALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLEL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 818 ECYRLLsaiysKQEHYAKALEAIEKALQLKPKDPKVISELfftkGNQLREQNLLDKAFESYKRAVELNPDQAQAWMNMGG 897
Cdd:COG3914    84 AALLLQ-----ALGRYEEALALYRRALALNPDNAEALFNL----GNLLLALGRLEEALAALRRALALNPDFAEAYLNLGE 154

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 1708953624 898 IEHIKGSYITARGYYEKALQLVPNSKLLKENLAKLDRLEKRFQE 941
Cdd:COG3914   155 ALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEE 198
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 567-683 2.69e-16

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 76.20  E-value: 2.69e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 567 EAIYHYKTALKLYPRHASALNNLGTL---TKDVVEAKDYYRRALQLNPQHNRALFNLGNLLKSQGKKEEAVILLRDSIKY 643
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAylrLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1708953624 644 GPEFADAYSSLASLLAEQERLKEAEEVYKAGIENCPESSD 683
Cdd:COG4235    81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAP 120
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
594-680 2.72e-16

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 74.82  E-value: 2.72e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 594 KDVVEAKDYYRRALQLNPQHNRALFNLGNLLKSQGKKEEAvILLRDSIKYGPEFADAYSSLASLLAEQERLKEAEEVYKA 673
Cdd:COG3063     6 GDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLER 84


                  ....*..
gi 1708953624 674 GIENCPE 680
Cdd:COG3063    85 ALELDPS 91
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 535-647 5.88e-16

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 75.61  E-value: 5.88e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 535 ESLFSSGVKTLPHNAKVHYNYANFLKDQGRNVEAIYHYKTALKLYPRHASALNNLGTL---TKDVVEAKDYYRRALQLNP 611
Cdd:COG4783    24 EALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAllkAGDYDEALALLEKALKLDP 103

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1708953624 612 QHNRALFNLGNLLKSQGKKEEAVILLRDSIKYGPEF 647
Cdd:COG4783   104 EHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 815-944 1.61e-15

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 74.46  E-value: 1.61e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 815 ECLECYRLLSAIYSKQEHYAKALEAIEKALQLKPKDPkvisELFFTKGNQLREQNLLDKAFESYKRAVELNPDQAQAWMN 894
Cdd:COG4783     2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNP----EAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLN 77

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1708953624 895 MGGIEHIKGSYITARGYYEKALQLVPNSKLLKENLAKLDRLEKRFQEVQE 944
Cdd:COG4783    78 LGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIA 127
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 627-943 4.50e-15

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 80.13  E-value: 4.50e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 627 QGKKEEAVILLRDSIKYGPEFADAYSSLASLLAEQerlkeaeevykagiencpessdlhnnygvflvdtGAPERAVSHYR 706
Cdd:TIGR02917  35 KNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLAL----------------------------------GDYAAAEKELR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 707 QAIHLSPAHHVAMVNLGRLHRSLGQNKEA--EVWYKRALKVSRKGEILSPLGALYYNTGRYEEALQVYREAASLQPSNKE 784
Cdd:TIGR02917  81 KALSLGYPKNQVLPLLARAYLLQGKFQQVldELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLY 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 785 IRLALAQVLAMMGRTKEAEKMTNHILNEDVECLECYRLLSAIYSKQEHYAKALEAIEKALQLKPKDPKV----ISELFFT 860
Cdd:TIGR02917 161 AKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVllalATILIEA 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 861 K---------------------GNQLR-----EQNLLDKAFESYKRAVELNPDQAQAWMNMGGIEHIKGSYITARGYYEK 914
Cdd:TIGR02917 241 GefeeaekhadallkkapnsplAHYLKalvdfQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQ 320

                         330       340
                  ....*....|....*....|....*....
gi 1708953624 915 ALQLVPNSKLLKENLAKLDRLEKRFQEVQ 943
Cdd:TIGR02917 321 ILKYAPNSHQARRLLASIQLRLGRVDEAI 349
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
561-646 6.13e-15

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 70.97  E-value: 6.13e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 561 DQGRNVEAIYHYKTALKLYPRHASALNNLGTL---TKDVVEAKDyYRRALQLNPQHNRALFNLGNLLKSQGKKEEAVILL 637
Cdd:COG3063     4 KLGDLEEAEEYYEKALELDPDNADALNNLGLLlleQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYL 82


                  ....*....
gi 1708953624 638 RDSIKYGPE 646
Cdd:COG3063    83 ERALELDPS 91
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
826-921 6.31e-15

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 70.97  E-value: 6.31e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 826 IYSKQEHYAKALEAIEKALQLKPKDPKVISELfftkGNQLREQNLLDKAfESYKRAVELNPDQAQAWMNMGGIEHIKGSY 905
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNL----GLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAELLLELGDY 75

                          90
                  ....*....|....*.
gi 1708953624 906 ITARGYYEKALQLVPN 921
Cdd:COG3063    76 DEALAYLERALELDPS 91
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 555-679 6.47e-15

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 73.07  E-value: 6.47e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 555 YANFLKDQGRNVEAIYHYKTALKLYPRHASALNNLGtltkDVVEAKDYYRRALQLNPQHNRALFNLGNLLKSQGKKEEAV 634
Cdd:COG5010    33 GANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLG----DFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAK 108

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1708953624 635 ILLRDSIKYGPEFADAYSSLASLLAEQERLKEAEEVYKAGIENCP 679
Cdd:COG5010   109 EYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 601-744 7.13e-15

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 73.07  E-value: 7.13e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 601 DYYRRALQLNPQHNRALFNLGNLLKSQGKKEEAVILLRDSIKYGPEFADAYSSLASLLAEQERLKEAEEVYKAGIENCPE 680
Cdd:COG5010     7 FDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPN 86

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1708953624 681 SSDLHNNYGVFLVDTGAPERAVSHYRQAIHLSPAHHVAMVNLGRLHRSLGQNKEAEVWYKRALK 744
Cdd:COG5010    87 NPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALG 150
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 632-746 8.98e-15

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 71.96  E-value: 8.98e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 632 EAVILLRDSIKYGPEFADAYSSLASLLAEQERLKEAEEVYKAGIENCPESSDLHNNYGVFLVDTGAPERAVSHYRQAIHL 711
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1708953624 712 SPAHHVAMVNLGRLHRSLGQNKEAEVWYKRALKVS 746
Cdd:COG4235    81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
657-748 1.20e-14

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 70.20  E-value: 1.20e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 657 LLAEQERLKEAEEVYKAGIENCPESSDLHNNYGVFLVDTGAPERAVShYRQAIHLSPAHHVAMVNLGRLHRSLGQNKEAE 736
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                          90
                  ....*....|..
gi 1708953624 737 VWYKRALKVSRK 748
Cdd:COG3063    80 AYLERALELDPS 91
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 666-792 1.39e-14

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 71.19  E-value: 1.39e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 666 EAEEVYKAGIENCPESSDLHNNYGVFLVDTGAPERAVSHYRQAIHLSPAHHVAMVNLGRLHRSLGQNKEAEVWYKRALKV 745
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1708953624 746 -SRKGEILSPLGALYYNTGRYEEALQVYREAASLQPSNKEIRLALAQV 792
Cdd:COG4235    81 dPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASI 128
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
564-775 2.11e-14

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 73.41  E-value: 2.11e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 564 RNVEAIYHYKTALKLYPRHASALNNLGTLTK---DVVEAKDYYRRAlQLNPQHNRALFNLGNLLKSQGKKEEAVILLRDS 640
Cdd:COG4785    21 KAAILLAALLFAAVLALAIALADLALALAAAalaAAALAAERIDRA-LALPDLAQLYYERGVAYDSLGDYDLAIADFDQA 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 641 IKYGPEFADAYSSLASLLAEQERLKEAEEVYKAGIENCPESSDLHNNYGVFLVDTGAPERAVSHYRQAIHLSPAHHVAMV 720
Cdd:COG4785   100 LELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERAL 179

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1708953624 721 NLGRLHRSLGQNKEaevwykralkvsrKGEILSPLGALYYNTGRYEEALQVYREA 775
Cdd:COG4785   180 WLYLAERKLDPEKA-------------LALLLEDWATAYLLQGDTEEARELFKLA 221
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 764-920 4.16e-14

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 70.76  E-value: 4.16e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 764 RYEEALQVYREAASLQPSNKEIRLALAQVLAMMGRTKEAEKMTNHILNEDVECLECYRLLSAIYSKQEHYAKALEAIEKA 843
Cdd:COG5010     1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1708953624 844 LQLKPKDPKVISELfftkGNQLREQNLLDKAFESYKRAVELNPDQAQAWMNMGGIEHIKGSYITARGYYEKALQLVP 920
Cdd:COG5010    81 LQLDPNNPELYYNL----ALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
692-781 1.96e-13

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 66.73  E-value: 1.96e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 692 LVDTGAPERAVSHYRQAIHLSPAHHVAMVNLGRLHRSLGQNKEAEVwYKRALKV-SRKGEILSPLGALYYNTGRYEEALQ 770
Cdd:COG3063     2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLdPNNAEALLNLAELLLELGDYDEALA 80

                          90
                  ....*....|.
gi 1708953624 771 VYREAASLQPS 781
Cdd:COG3063    81 YLERALELDPS 91
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 598-713 7.79e-13

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 67.29  E-value: 7.79e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 598 EAKDYYRRALQLNPQHNRALFNLGNLLKSQGKKEEAVILLRDSIKYGPEFADAYSSLASLLAEQERLKEAEEVYKAGIEN 677
Cdd:COG5010    38 KEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALAL 117

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1708953624 678 CPESSDLHNNYGVFLVDTGAPERAVSHYRQAIHLSP 713
Cdd:COG5010   118 SPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 555-932 8.90e-13

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 72.32  E-value: 8.90e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 555 YANFLKDQGRNV-------EAIYHYKTALKL------YPRHASALNNLGTLTKdVVEAKDyyrRALQLNPQHNRALFNLG 621
Cdd:TIGR00990 126 YAAKLKEKGNKAyrnkdfnKAIKLYSKAIECkpdpvyYSNRAACHNALGDWEK-VVEDTT---AALELDPDYSKALNRRA 201

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 622 NLLKSQGKKEEAVILLRDSIKYGpEFADAYSS--LASLLAEQERLKeAEEVYKAGIENCPESSDLHNNYGVFlvdtgAPE 699
Cdd:TIGR00990 202 NAYDGLGKYADALLDLTASCIID-GFRNEQSAqaVERLLKKFAESK-AKEILETKPENLPSVTFVGNYLQSF-----RPK 274

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 700 RAVSHYRQAIHLSPAHHVAMVNLGRLHRslgQNKEAEvWYKRALKVSRKGEILSPLG---ALYYN--------TGRYEEA 768
Cdd:TIGR00990 275 PRPAGLEDSNELDEETGNGQLQLGLKSP---ESKADE-SYEEAARAFEKALDLGKLGekeAIALNlrgtfkclKGKHLEA 350

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 769 LQVYREAASLQPSNKEIRLALAQVLAMMGRTKEAEKMTNHILNEDVECLECYRLLSAIYSKQEHYAKALEAIEKALQLkp 848
Cdd:TIGR00990 351 LADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL-- 428

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 849 kDPKVI------------------SELFFTK---------------GNQLREQNLLDKAFESYKRAVELNPDQAQAWMNM 895
Cdd:TIGR00990 429 -DPDFIfshiqlgvtqykegsiasSMATFRRckknfpeapdvynyyGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNV 507

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....
gi 1708953624 896 G-------GIEHIKGSYITARGYYEKALQLVPNSKLLKENLAKL 932
Cdd:TIGR00990 508 LplinkalALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQL 551
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 835-941 1.40e-12

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 65.41  E-value: 1.40e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 835 KALEAIEKALQLKPKDPkvisELFFTKGNQLREQNLLDKAFESYKRAVELNPDQAQAWMNMGGIEHIKGSYITARGYYEK 914
Cdd:COG4235     1 EAIARLRQALAANPNDA----EGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLER 76

                          90       100
                  ....*....|....*....|....*..
gi 1708953624 915 ALQLVPNSKLLKENLAKLDRLEKRFQE 941
Cdd:COG4235    77 ALALDPDNPEALYLLGLAAFQQGDYAE 103
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 734-848 1.65e-12

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 66.14  E-value: 1.65e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 734 EAEVWYKRALKVSRKGEILSPLGALYYNTGRYEEALQVYREAASLQPSNKEIRLALAQVLAMMGRTKEAEKMTNHILNED 813
Cdd:COG5010    39 EDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALS 118

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1708953624 814 VECLECYRLLSAIYSKQEHYAKALEAIEKALQLKP 848
Cdd:COG5010   119 PDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 653-918 3.14e-12

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 68.42  E-value: 3.14e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 653 SLASLLAEQERLKEAEEVYKAGIENCPESSDLHNNYGVFLVDTGAPERAVSHYRQAIHLSPAH-HVAMVNLGRLHrslgQ 731
Cdd:cd24142     5 EKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGgYEKYLYLGQLS----G 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 732 NKEAEVWYKRALkvsrkgEILsplgalyyntgryEEALQVYREAASLQPSN-KEIRLALAQVLAMMGR---T-------- 799
Cdd:cd24142    81 GEEALQYYEKGI------EIL-------------EEELQALQAASAEAEEEaEELKRKLSSALCALAEiymTdlcdepda 141

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 800 -KEAEKMTNHILNEDVECLECYRLLSAIYSKQEHYAKALEAIEKALQL-KPKDPKVISELFFTKGN-------QLR---- 866
Cdd:cd24142   142 eQRCEELITKALELDPTNPEALQTLASLRISQQRPDEAKEALRRSLELwKDLKEEDEEEAEEDEAEeedvpsyEFRisla 221

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1708953624 867 ----EQNLLDKAFESYKRAVELNPDQAQAW-------MNMG--GIEHIKGSYITARGYYEKALQL 918
Cdd:cd24142   222 klliELEMYEEALEVLEQLLDEDDEDVEVWyllgwayYLLGekEQEEAAELLRDARELLEKALKL 286
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
758-849 6.12e-12

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 62.50  E-value: 6.12e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 758 LYYNTGRYEEALQVYREAASLQPSNKEIRLALAQVLAMMGRTKEAEKMtNHILNEDVECLECYRLLSAIYSKQEHYAKAL 837
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                          90
                  ....*....|..
gi 1708953624 838 EAIEKALQLKPK 849
Cdd:COG3063    80 AYLERALELDPS 91
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 598-868 3.42e-11

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 66.93  E-value: 3.42e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 598 EAKDYYRRALQLNP--QHNRALFNLGNLLKS-QGKKEEAVILLRDSIKYGPEFADAYSSLASLLAEQERLKEAEEVYKAG 674
Cdd:TIGR00990 312 EAARAFEKALDLGKlgEKEAIALNLRGTFKClKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKA 391

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 675 IENCPESSDLHNNYGVFLVDTGAPERAVSHYRQAIHLSPAHHVAMVNLGRLHRSLGQNKEAEVWYKRALK-VSRKGEILS 753
Cdd:TIGR00990 392 LKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKnFPEAPDVYN 471

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 754 PLGALYYNTGRYEEALQVYREAASLQPSNKEIRLALAQVLA---MMGRTK----EAEKMTNHILNEDVECLECYRLLSAI 826
Cdd:TIGR00990 472 YYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINkalALFQWKqdfiEAENLCEKALIIDPECDIAVATMAQL 551

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1708953624 827 YSKQEHYAKALEAIEKALQLKPKDPKVISELFFTKGNQLREQ 868
Cdd:TIGR00990 552 LLQQGDVDEALKLFERAAELARTEGELVQAISYAEATRTQIQ 593
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
623-716 4.26e-11

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 60.18  E-value: 4.26e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 623 LLKSQGKKEEAVILLRDSIKYGPEFADAYSSLASLLAEQERLKEAEEvYKAGIENCPESSDLHNNYGVFLVDTGAPERAV 702
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                          90
                  ....*....|....
gi 1708953624 703 SHYRQAIHLSPAHH 716
Cdd:COG3063    80 AYLERALELDPSAL 93
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
535-611 4.60e-11

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 60.18  E-value: 4.60e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 535 ESLFSSGVKTLPHNAKVHYNYANFLKDQGRNVEAIyHYKTALKLYPRHASALNNLGTL---TKDVVEAKDYYRRALQLNP 611
Cdd:COG3063    12 EEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELlleLGDYDEALAYLERALELDP 90
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
815-921 6.01e-11

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 63.40  E-value: 6.01e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 815 ECLECYRLLSAIYSKQEHYAKALEAIEKALQLKPKDPkvisELFFTKGNQLREQNLLDKAFESYKRAVELNPDQAQAWMN 894
Cdd:COG4785    71 DLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLA----EAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLN 146

                          90       100
                  ....*....|....*....|....*..
gi 1708953624 895 MGGIEHIKGSYITARGYYEKALQLVPN 921
Cdd:COG4785   147 RGIALYYLGRYELAIADLEKALELDPN 173
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 546-790 6.19e-11

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 66.16  E-value: 6.19e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 546 PHNAKVHYNYANFLKDQGRNVEAIYHYKTALKLYPR-------HASALNNLGtltkDVVEAKDYYRRALQLNPQHNRALF 618
Cdd:TIGR00990 328 EKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRvtqsyikRASMNLELG----DPDKAEEDFDKALKLNSEDPDIYY 403

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 619 NLGNLLKSQGKKEEAVILLRDSIKYGPEFADAYSSLASLLAEQERLKEAEEVYKAGIENCPESSDLHNNYGVFLVDTGAP 698
Cdd:TIGR00990 404 HRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKF 483

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 699 ERAVSHYRQAIHLSPAHHVAMVNLGRL---HRSLGQNK----EAEVWYKRALKVSRKGEI-LSPLGALYYNTGRYEEALQ 770
Cdd:TIGR00990 484 DEAIEKFDTAIELEKETKPMYMNVLPLinkALALFQWKqdfiEAENLCEKALIIDPECDIaVATMAQLLLQQGDVDEALK 563

                         250       260
                  ....*....|....*....|
gi 1708953624 771 VYREAASLQPSNKEIRLALA 790
Cdd:TIGR00990 564 LFERAAELARTEGELVQAIS 583
TPR_19 pfam14559
Tetratricopeptide repeat;
763-826 2.00e-10

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 57.21  E-value: 2.00e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1708953624 763 GRYEEALQVYREAASLQPSNKEIRLALAQVLAMMGRTKEAEKMTNHILNEDVECLECYRLLSAI 826
Cdd:pfam14559   2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLAKL 65
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 865-944 2.27e-10

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 59.97  E-value: 2.27e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 865 LREQNLLDKAFESYKRAVELNPDQAQAWMNMGGIEHIKGSYITARGYYEKALQLVPNSKLLKENLAKLDRLEKRFQEVQE 944
Cdd:COG5010    64 YNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKA 143
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
637-917 4.56e-10

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 60.70  E-value: 4.56e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 637 LRDSIKYGPEFADAYSSLASLLAEQERLKEAEEVYKAGIENcPESSDLHNNYGVFLVDTGAPERAVSHYRQAIHLSPAHh 716
Cdd:COG4785    29 LLFAAVLALAIALADLALALAAAALAAAALAAERIDRALAL-PDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDL- 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 717 vamvnlgrlhrslgqnkeAEVWYKRalkvsrkgeilsplGALYYNTGRYEEALQVYREAASLQPSNKEIRLALAQVLAMM 796
Cdd:COG4785   107 ------------------AEAYNNR--------------GLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYL 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 797 GRtkeaekmtnhilnedveclecyrllsaiyskqehYAKALEAIEKALQLKPKDPKVISELFFTKGnqlreqnlldkafe 876
Cdd:COG4785   155 GR----------------------------------YELAIADLEKALELDPNDPERALWLYLAER-------------- 186

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 1708953624 877 sykravELNPDQAQAWMNM--GGIEHIKGSYITARGYYEKALQ 917
Cdd:COG4785   187 ------KLDPEKALALLLEdwATAYLLQGDTEEARELFKLALA 223
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 556-780 8.63e-10

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 61.46  E-value: 8.63e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 556 ANFLKDQGRNVEAIYHYKTALKLYPRHASALN---NLGTLTKDVVEAKDYYRRALQ---LNPQHNRALFNLG--NLLKSQ 627
Cdd:COG3071    92 AELLLDQGQAEQALATLEALRAGAPRHPQVLRlllQAYRQLGDWEELLELLPALRKhkaLSAEEAQALERRAylGLLRQA 171

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 628 GKKEEAVIL----LRDSIKYGPEFADAYsslASLLAEQERLKEAEEVYKAGIENCPeSSDLHNNYGvfLVDTGAPERAVS 703
Cdd:COG3071   172 ARDAEALKAlwkaLPRAERRDPELAAAY---ARALIALGDHDEAERLLREALKRQW-DPRLVRLYG--RLQGGDPAKQLK 245

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1708953624 704 HYRQAIHLSPAHHVAMVNLGRLHRSLGQNKEAEVWYKRALKVSRKGEILSPLGALYYNTGRYEEALQVYREAASLQP 780
Cdd:COG3071   246 RAEKWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALALRPSAEAYAELARLLEQLGDPEEAAEHYRKALALAL 322
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 561-922 2.04e-09

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 61.64  E-value: 2.04e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624  561 DQGRNVEAIYHYKTALKLYPRHASALNNLG---TLTKDVVEAKDYYRRALQLNPQHNralfnlgNLLKSQGkkeeavilL 637
Cdd:PRK11447   281 DSGQGGKAIPELQQAVRANPKDSEALGALGqaySQQGDRARAVAQFEKALALDPHSS-------NRDKWES--------L 345

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624  638 RDSIKYGPEFADAYSSLasllaEQERLKEAEEVYKAGiencpESSDLHNNYGVFLV--------DTGAPERavsHYRQAI 709
Cdd:PRK11447   346 LKVNRYWLLIQQGDAAL-----KANNLAQAERLYQQA-----RQVDNTDSYAVLGLgdvamarkDYAAAER---YYQQAL 412

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624  710 HLSPAHHVAMVNLGRLHRSlgQNKEAEVWYKRALKVSRKGEILSPLGAL-----------YYNTGRYEEALQVYREAASL 778
Cdd:PRK11447   413 RMDPGNTNAVRGLANLYRQ--QSPEKALAFIASLSASQRRSIDDIERSLqndrlaqqaeaLENQGKWAQAAELQRQRLAL 490

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624  779 QPSNKEIRLALAQVLAMMGRTKEAE----KMTNHILNeDVECLECYRL-LSAiySKQEHYAKA-LEAIEKAlQLKPK--- 849
Cdd:PRK11447   491 DPGSVWLTYRLAQDLRQAGQRSQADalmrRLAQQKPN-DPEQVYAYGLyLSG--SDRDRAALAhLNTLPRA-QWNSNiqe 566

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624  850 -DPKVISELFFTKGNQLREQNLLDKAfESYKRAVELNP-------DQAQAwmnmggiehiKGSYITARGYYEKALQLVPN 921
Cdd:PRK11447   567 lAQRLQSDQVLETANRLRDSGKEAEA-EALLRQQPPSTridltlaDWAQQ----------RGDYAAARAAYQRVLTREPG 635


                   .
gi 1708953624  922 S 922
Cdd:PRK11447   636 N 636
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 833-931 2.52e-09

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 57.37  E-value: 2.52e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 833 YAKALEAIEKALQLKpKDPKVISELFFTKGNQLREQNLLDKAFESYKRAVELNPDQAQAWMNMGGIEHIKGSYITARG-- 910
Cdd:PRK02603   51 YAEALENYEEALKLE-EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGdq 129

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1708953624 911 ------------YYEKALQLVPNSKLLKENLAK 931
Cdd:PRK02603  130 deaealfdkaaeYWKQAIRLAPNNYIEAQNWLK 162
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 535-611 3.86e-09

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 56.51  E-value: 3.86e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 535 ESLFSSGVKTLPHNAKVHYNYANFLKDQGRNVEAIYHYKTALKLYPRHASALNNLGTL---TKDVVEAKDYYRRALQLNP 611
Cdd:COG5010    74 LALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALllsLGQDDEAKAALQRALGTSP 153
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 561-657 1.13e-08

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 53.84  E-value: 1.13e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 561 DQGRNVEAIYHYKTALKLYPRH---ASALNNLGTL---TKDVVEAKDYYRRALQLNPQHNR---ALFNLGNLLKSQGKKE 631
Cdd:COG1729     5 KAGDYDEAIAAFKAFLKRYPNSplaPDALYWLGEAyyaLGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLELGDYD 84

                          90       100
                  ....*....|....*....|....*....
gi 1708953624 632 EAVILLRDSIKYGP---EFADAYSSLASL 657
Cdd:COG1729    85 KARATLEELIKKYPdseAAKEARARLARL 113
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 829-935 1.16e-08

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 53.84  E-value: 1.16e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 829 KQEHYAKALEAIEKALQLKPKDPKVISELFFtKGNQLREQNLLDKAFESYKRAVELNPD---QAQAWMNMGGIEHIKGSY 905
Cdd:COG1729     5 KAGDYDEAIAAFKAFLKRYPNSPLAPDALYW-LGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLELGDY 83

                          90       100       110
                  ....*....|....*....|....*....|
gi 1708953624 906 ITARGYYEKALQLVPNSKLLKENLAKLDRL 935
Cdd:COG1729    84 DKARATLEELIKKYPDSEAAKEARARLARL 113
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
865-941 1.38e-08

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 52.87  E-value: 1.38e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1708953624 865 LREQNLLDKAFESYKRAVELNPDQAQAWMNMGGIEHIKGSYITARGYyEKALQLVPNSKLLKENLAKLDRLEKRFQE 941
Cdd:COG3063     2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDYDE 77
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 594-682 2.81e-08

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 52.69  E-value: 2.81e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 594 KDVVEAKDYYRRALQLNPQHN---RALFNLGNLLKSQGKKEEAVILLRDSIKYGPE---FADAYSSLASLLAEQERLKEA 667
Cdd:COG1729     7 GDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLELGDYDKA 86

                          90
                  ....*....|....*
gi 1708953624 668 EEVYKAGIENCPESS 682
Cdd:COG1729    87 RATLEELIKKYPDSE 101
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 595-846 6.21e-08

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 55.33  E-value: 6.21e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 595 DVVEAKDYYRRALQLNPQHNRALFNLGNLLKSQGKKEEAVILLRDSIKYGPE-FADAYSSLASLLAEQERL--------- 664
Cdd:cd24142    15 NFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDgGYEKYLYLGQLSGGEEALqyyekgiei 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 665 --KEAEEVYKAGIENCPESSDLHNNYG--------VFLVDT----GAPERAVSHYRQAIHLSPAHHVAMVNLGRLHRSLG 730
Cdd:cd24142    95 leEELQALQAASAEAEEEAEELKRKLSsalcalaeIYMTDLcdepDAEQRCEELITKALELDPTNPEALQTLASLRISQQ 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 731 QNKEAEVWYKRALkvsrkgEILSPLGAlyyntgRYEEALQVYREAASLQPSnKEIRLALAQVLAMMGRTKEAEKMTNHIL 810
Cdd:cd24142   175 RPDEAKEALRRSL------ELWKDLKE------EDEEEAEEDEAEEEDVPS-YEFRISLAKLLIELEMYEEALEVLEQLL 241

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 1708953624 811 NEDVECLE-------CYRLLS--AIYSKQEHYAKALEAIEKALQL 846
Cdd:cd24142   242 DEDDEDVEvwyllgwAYYLLGekEQEEAAELLRDARELLEKALKL 286
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 567-881 1.46e-07

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 55.47  E-value: 1.46e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624  567 EAIYHYKTALKLYPRHASALNNLGTLT---KDVVEAKDYYRRALQLNPQHNRALFNLGNLLKSQG-KKEEAVI--LLRDS 640
Cdd:PRK11447   369 QAERLYQQARQVDNTDSYAVLGLGDVAmarKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSpEKALAFIasLSASQ 448

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624  641 IKygpEFADAYSSL--------ASLLAEQERLKEAEEVYKAGIENCPESSDLHNNYGVFLVDTGAPERAVSHYRQAIHLS 712
Cdd:PRK11447   449 RR---SIDDIERSLqndrlaqqAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK 525

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624  713 P-------AHHV----------AMVNLGRLHRS---------------------------LGQNKEAEVWYKRALKVSRk 748
Cdd:PRK11447   526 PndpeqvyAYGLylsgsdrdraALAHLNTLPRAqwnsniqelaqrlqsdqvletanrlrdSGKEAEAEALLRQQPPSTR- 604

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624  749 geILSPLGALYYNTGRYEEALQVYREAASLQPSNKEIRLALAQVLAMMGRTKEAEKMTNHILNEDVECLECYRLLSAIYS 828
Cdd:PRK11447   605 --IDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWA 682

                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1708953624  829 KQEHYAKALEAIEK-ALQLKPKDPKVISELFFTKGNQLREQNLL-DKAFESYKRA 881
Cdd:PRK11447   683 ALGDTAAAQRTFNRlIPQAKSQPPSMESALVLRDAARFEAQTGQpQQALETYKDA 737
gliding_GltE NF033758
adventurous gliding motility TPR repeat lipoprotein GltE; GltE (also called AglT) is a ...
 603-918 2.56e-07

adventurous gliding motility TPR repeat lipoprotein GltE; GltE (also called AglT) is a tetratricopeptide repeat protein with a lipoprotein signal peptide and a role in A-motility (adventurous gliding motility) in Myxococcus xanthus and other delta-proteobacteria.


Pssm-ID: 468174 [Multi-domain]  Cd Length: 411  Bit Score: 54.06  E-value: 2.56e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 603 YRRALQLNPQHNRALFNLGNLLKSQGKKEEAVILLRDSIKYGPEFADAYSSLASLLAEQERLKEAEEVYKAGIENCPESS 682
Cdd:NF033758   75 FKAALEADPNLAEAEYNLGVLAERQGKTDEAVARYKAALKKKPTLRQASENLAVMAQNAGDVAGAVALYQDVLKRYPDDA 154

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 683 DLHNNYGVFLVDTGAPERAVSHYRQAIHLSPAHHVAMVNLGRLHRSLGQNKEAEVWYKRALKV-SRKGEILSPLGALYYN 761
Cdd:NF033758  155 SSRARLAEIYRQTGDHDKAMELSRAALMRDPQSTTALKVMMRSYLDRKQLAMAKLVALRAVKIdQNDPELHHTVGLILLQ 234

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 762 TGRYEEALQVYREAASLQPSNKEIRLALAQvLAMmgrtkeaekmtnhilnedveclecyrllsaiysKQEHYAKALEAIE 841
Cdd:NF033758  235 EGDKDGARLQFKRALEVRADYVPSHVELAQ-LAL---------------------------------DAEDYPGAEEHLR 280

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1708953624 842 KALQLKPKDPKVISELfftkGNQLREQNLLDKAFESYKRAVELNPDQAQAWMNMGGIEHikgsyiTARGYYEKALQL 918
Cdd:NF033758  281 RILQADGKNAAAHLNL----GVAYKGQGQYDKAMQEYDEAEKLDPELAAIYLNRAIILH------RVKDAPERAVEL 347
TPR_MalT pfam17874
MalT-like TPR region; This entry contains a series of TPR repeats.
 595-846 2.86e-07

MalT-like TPR region; This entry contains a series of TPR repeats.


Pssm-ID: 436107 [Multi-domain]  Cd Length: 336  Bit Score: 53.47  E-value: 2.86e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 595 DVVEAKDYYRRALQLNP--QHNR---ALFNLGNLLKSQGKKEEAVILLR------DSIKYGPEFADAYSSLASLLAEQER 663
Cdd:pfam17874  16 DAERALELAEQALALLPedDLLArglATFVLGEAYLCLGDLDAALQAMReaealaRRADSPHVTLWALLQQGEILRAQGR 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 664 LKEAEEVYKAGI--------ENCPESSDLHNNYGVFLVDTGAPERAVSHYRQAI----HLSPAHHV-AMVNLGRLHRSLG 730
Cdd:pfam17874  96 LHQALETYQQALqlardhglQHLPLHGFLLVGLADLLYEWNDLEEAEQHAQQGIqlgrQWEPDAAVdAYVLLARIALAQG 175

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 731 QNKEAEVWYKRALKVSRKGEILSPLGA-------LYY----NTGRYEEALQVYREAASLQPSNKEIRL-ALAQVLAMMGR 798
Cdd:pfam17874 176 ELEEALTLLRRAELLARQSFFHVDWLAnaervrvRLWlargDLRAAVRWLRAAEPPSDADNHFLERELrNLARVLLALGR 255

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1708953624 799 TKEAEKMTNHILNE------DVECLECYRLLSAIYSKQEHYAKALEAIEKALQL 846
Cdd:pfam17874 256 FDDALSLLERLQNLaeqlgrVRSLIENLILQALALLALGRPDEALQALLDALSL 309
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
833-922 5.29e-07

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 51.45  E-value: 5.29e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 833 YAKALEAIEKALQLKPKDPKVIsELFFTKGNQLREQNLLDKAFESYKRAVELNPDQAQAWMNMGGIEHIKGSYITARGYY 912
Cdd:COG4785    52 ALAAAALAAERIDRALALPDLA-QLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDF 130

                          90
                  ....*....|
gi 1708953624 913 EKALQLVPNS 922
Cdd:COG4785   131 DRALELDPDY 140
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 873-944 5.92e-07

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 49.62  E-value: 5.92e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1708953624 873 KAFESYKRAVELNPDQAQAWMNMGGIEHIKGSYITARGYYEKALQLVPNSKLLKENLAKLDRLEKRFQEVQE 944
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEE 72
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 858-946 6.31e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 52.04  E-value: 6.31e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 858 FFTKGNQLREQNLLDKAFESYKRAVELNPDQAQAWMNMGGIEHIKGSYITARGYYEKALQLVPNSKLLKENLAK------ 931
Cdd:COG2956    11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQdylkag 90

                          90
                  ....*....|....*.
gi 1708953624 932 -LDRLEKRFQEVQEKD 946
Cdd:COG2956    91 lLDRAEELLEKLLELD 106
TPR_11 pfam13414
TPR repeat;
756-797 1.21e-06

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 45.93  E-value: 1.21e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1708953624 756 GALYYNTGRYEEALQVYREAASLQPSNKEIRLALAQVLAMMG 797
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
TPR COG0790
TPR repeat [General function prediction only];
572-744 1.60e-06

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 50.31  E-value: 1.60e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 572 YKTALKLYPR-----HASALNNLGTL-------TKDVVEAKDYYRRALQLNpqHNRALFNLGNL-LKSQGKK---EEAVI 635
Cdd:COG0790    83 YEKALEWFEKaaeqgDAEAQYNLGLMyeeglgvPQDYAKALEWYEKAAEQG--DADAQYNLGLLyLNGEGVPkdpAKAAE 160

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 636 LLRDSIKYGpeFADAYSSLASLLAEQErlkeaeevykaGIEncpessdlhnnygvflVDtgaPERAVSHYRQAIHLspAH 715
Cdd:COG0790   161 WYRKAAEQG--DADAQYNLGVLYENGR-----------GVP----------------KD---PAKALEWYRKAAEQ--GD 206

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1708953624 716 HVAMVNLGRLH---RSLGQN-KEAEVWYKRALK 744
Cdd:COG0790   207 ADAQYNLGRLYlngEGVEKDlEKALRWLRKAAE 239
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 731-897 1.65e-06

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 49.29  E-value: 1.65e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 731 QNKEAEVWYkralkvsRKGeilspLGAlyYNTGRYEEALQVYREAASLQpSNKEIRlalAQVLAMMGrtkeaekmtnhil 810
Cdd:PRK02603   31 KAKEAFVYY-------RDG-----MSA--QADGEYAEALENYEEALKLE-EDPNDR---SYILYNMG------------- 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 811 nedveclecyrllsAIY-SKQEHyAKALEAIEKALQLKPKDP---KVISELFFTKGNQLREQ-------NLLDKAFESYK 879
Cdd:PRK02603   80 --------------IIYaSNGEH-DKALEYYHQALELNPKQPsalNNIAVIYHKRGEKAEEAgdqdeaeALFDKAAEYWK 144

                         170       180
                  ....*....|....*....|.
gi 1708953624 880 RAVELNPD---QAQAWMNMGG 897
Cdd:PRK02603  145 QAIRLAPNnyiEAQNWLKTTG 165
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 730-843 2.91e-06

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 46.91  E-value: 2.91e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 730 GQNKEAEVWYKRALKV----SRKGEILSPLGALYYNTGRYEEALQVYREAASLQPSNK---EIRLALAQVLAMMGRTKEA 802
Cdd:COG1729     7 GDYDEAIAAFKAFLKRypnsPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPkapDALLKLGLSYLELGDYDKA 86

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1708953624 803 EKMtnhilnedveclecYRLLSAIYSKQEHYAKALEAIEKA 843
Cdd:COG1729    87 RAT--------------LEELIKKYPDSEAAKEARARLARL 113
TPR_15 pfam13429
Tetratricopeptide repeat;
643-803 5.35e-06

Tetratricopeptide repeat;


Pssm-ID: 433199 [Multi-domain]  Cd Length: 279  Bit Score: 49.28  E-value: 5.35e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 643 YGPEFADAYSSLASLLAEQERLKEAEEvykagiencpeSSDLHNNYGVFLVDTGAPERAVSHYRQAIHLSPAHHVAMVNL 722
Cdd:pfam13429 117 YLYERAGDYDRLARLLASLEELPAAEQ-----------SPAFWLARAEYYRQTGEPDAALRDYRRALALAPASTELRAAL 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 723 GRLHRSLGQNKEAE----VWYKRALKVSRkgeILSPLGALYYNTGRYEEALQVYREAASLQPSNKEIRLALAQVLAMMGR 798
Cdd:pfam13429 186 LWFLIDLGRRAELRpalaAWRARAETDAD---LWGPLAAAYLRLGRPRKALPYLRKQAASNRNDPLWLLAYADALEQAGR 262


                  ....*
gi 1708953624 799 TKEAE 803
Cdd:pfam13429 263 ADAAW 267
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 658-744 5.41e-06

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 46.14  E-value: 5.41e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 658 LAEQERLKEAEEVYKAGIENCPESS---DLHNNYGVFLVDTGAPERAVSHYRQAIHLSPAHHV---AMVNLGRLHRSLGQ 731
Cdd:COG1729     3 LLKAGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLELGD 82

                          90
                  ....*....|...
gi 1708953624 732 NKEAEVWYKRALK 744
Cdd:COG1729    83 YDKARATLEELIK 95
pgaA PRK10049
outer membrane protein PgaA; Provisional
 759-870 8.96e-06

outer membrane protein PgaA; Provisional


Pssm-ID: 236644 [Multi-domain]  Cd Length: 765  Bit Score: 49.72  E-value: 8.96e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 759 YYNTGRYEEALQVYREAASLQPSNKEIRLALAQVLAMMGRTKEAEKMTNHILNEDVECLEcYRLLSAIYSKQEHYAKALE 838
Cdd:PRK10049   59 YRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELR 137

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1708953624 839 AIEKALQLKPKDPKVISELFFT-KGNQLREQNL 870
Cdd:PRK10049  138 AMTQALPRAPQTQQYPTEYVQAlRNNRLSAPAL 170
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 579-805 1.25e-05

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 49.15  E-value: 1.25e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 579 YPRHASALNNLG---TLTKDVVEAKDYYRRALQ-----LNPQHNRALFNLGNL---LKSQGKKEEAVILLRDSIKY---- 643
Cdd:NF040586  516 HPRTLRAANNLAvslRLLGDYREALELDREVLRrrrrvLGPDHPRTLLSANNLardLRELGRYAEALDLLEEALERyrev 595

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 644 --GPEFAD---AYSSLA-SL-----LAEQERLkeAEEVYKA-----GIENcPESSDLHNNYGVFLVDTGAPERA------ 701
Cdd:NF040586  596 lgGPDHPDtlrAAKSLAvALrragrLEEALEL--AEDTYERyrrrfGPDH-PDTLAAALSLANDLRALGDADEArelare 672

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 702 -VSHYRQAIHLS-PAHHVAMVNLGRLHRSLGQNKEAEVWYKRALkvSRKGEILSP-----------LGALYYNTGRYEEA 768
Cdd:NF040586  673 vLDRYRRVLGEDhPFTLACRNNLAVLLRALGDPEEARELAEAAL--EGLRERLGPdhpytlaaavnLANDLAALGDLDAA 750

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*....
gi 1708953624 769 L--------QVYREAASLQPSNKEIRLA----LAQVLAMMGRTKEAEKM 805
Cdd:NF040586  751 LgeealerlRRLLGEDLRAGPDHPDTLAcaanLALDLRATGRTEEAEEL 799
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 611-821 1.44e-05

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 49.15  E-value: 1.44e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 611 PQHNRALFNLGNLLKSQGKKEEAVIL-------LRDSIKYGPEFADAYSSLASLLAE-------QERLKEAEEVY----K 672
Cdd:NF040586  431 RQTLRLRFHLANALRSLGRYEEARELdedtlerQRRVLGLGEDHPHTLMTAGGLGADlralgrfREALELDEETLerhrR 510

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 673 AGIENCPESSDLHNNYGVFLVDTGAPERA------VSHYRQAIhLSPAHH---VAMVNLGRLHRSLGQNKEA----EVWY 739
Cdd:NF040586  511 VFGEDHPRTLRAANNLAVSLRLLGDYREAleldreVLRRRRRV-LGPDHPrtlLSANNLARDLRELGRYAEAldllEEAL 589

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 740 KRALKVSRKGEILSPLGAL------YYNTGRYEEALQVYREAAS-----LQPSNKE---IRLALAQVLAMMGRTKEAEKM 805
Cdd:NF040586  590 ERYREVLGGPDHPDTLRAAkslavaLRRAGRLEEALELAEDTYEryrrrFGPDHPDtlaAALSLANDLRALGDADEAREL 669

                         250
                  ....*....|....*.
gi 1708953624 806 TNhilnedvECLECYR 821
Cdd:NF040586  670 AR-------EVLDRYR 678
Ycf37 COG5714
Photosystem I assembly protein Ycf37, contains TPR repeats [Energy production and conversion]; ...
 553-625 1.73e-05

Photosystem I assembly protein Ycf37, contains TPR repeats [Energy production and conversion]; Photosystem I assembly protein Ycf37, contains TPR repeats is part of the Pathway/BioSystem: Photosystem I


Pssm-ID: 444424 [Multi-domain]  Cd Length: 176  Bit Score: 46.09  E-value: 1.73e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1708953624 553 YN---YANFLKDQGRnvEAIYHYKTALKLYPRHASALNNLGTL---TKDVVEAKDYYRRALQLNPQHNRALFNLGNLLK 625
Cdd:COG5714    94 YNalgFAYFAQEQYD--LAIRQYKEALKLKPDYVTALNNLGHAyekKKLTAQALETYEEALKLDPNNKTAKRRAESLRK 170
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 533-640 1.74e-05

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 48.44  E-value: 1.74e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 533 SRESLFSSGVKTLPHNAKVHYNYANFLKDQGRNVEAIYHYKTALKL-------YPRHASALNNLGTLTK---DVVEAKDY 602
Cdd:TIGR00990 451 SSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELeketkpmYMNVLPLINKALALFQwkqDFIEAENL 530

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1708953624 603 YRRALQLNPQHNRALFNLGNLLKSQGKKEEAVILLRDS 640
Cdd:TIGR00990 531 CEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERA 568
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 556-887 2.01e-05

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 48.54  E-value: 2.01e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624  556 ANFLKDQGRNVEAIYHYKtalKLYPRHASALnnlgtltkDVveAKDYYRRALQLNPQHNRAL-----------------F 618
Cdd:PRK11447   119 ARLLATTGRTEEALASYD---KLFNGAPPEL--------DL--AVEYWRLVAKLPAQRPEAInqlqrlnadypgntglrN 185

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624  619 NLGNLLKSQGKKEEAVILLR-----------------DSIKYGP----------EFADAYSS------LASLLAEQERLK 665
Cdd:PRK11447   186 TLALLLFSSGRRDEGFAVLEqmakspagrdaaaqlwyGQIKDMPvsdasvaalqKYLQVFSDgdsvaaARSQLAEQQKQL 265

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624  666 eAEEVYKAGIEncpessdlhnnyGVFLVDTGAPERAVSHYRQAIHLSPAHHVAMVNLGRLHRSLGQNKEAEVWYKRALKV 745
Cdd:PRK11447   266 -ADPAFRARAQ------------GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALAL 332

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624  746 SRKGEILSPLGAL-----YYNT----------GRYEEALQVYREAASLQPSNKEIRLALAQVLAMMGRTKEAEKMTNHIL 810
Cdd:PRK11447   333 DPHSSNRDKWESLlkvnrYWLLiqqgdaalkaNNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQAL 412

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624  811 NEDVECLECYRLLSAIYSKQ-----EHYAKALEA--------IEKALQLkpkdpkvisELFFTKGNQLREQNLLDKAFES 877
Cdd:PRK11447   413 RMDPGNTNAVRGLANLYRQQspekaLAFIASLSAsqrrsiddIERSLQN---------DRLAQQAEALENQGKWAQAAEL 483

                          410
                   ....*....|
gi 1708953624  878 YKRAVELNPD 887
Cdd:PRK11447   484 QRQRLALDPG 493
TPR_MalT pfam17874
MalT-like TPR region; This entry contains a series of TPR repeats.
 687-851 2.10e-05

MalT-like TPR region; This entry contains a series of TPR repeats.


Pssm-ID: 436107 [Multi-domain]  Cd Length: 336  Bit Score: 47.69  E-value: 2.10e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 687 NYGVFLVDTGAPERAVSHYRQAIHLSPAHHV------AMVNLGRLHRSLGQNKEAEVWYKRALKVSRK---------GEI 751
Cdd:pfam17874  45 VLGEAYLCLGDLDAALQAMREAEALARRADSphvtlwALLQQGEILRAQGRLHQALETYQQALQLARDhglqhlplhGFL 124

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 752 LSPLGALYYNTGRYEEALQVYREAASL--QPSNK---EIRLALAQVLAMMGRTKEAEK---------MTNHILNEDVECL 817
Cdd:pfam17874 125 LVGLADLLYEWNDLEEAEQHAQQGIQLgrQWEPDaavDAYVLLARIALAQGELEEALTllrraellaRQSFFHVDWLANA 204

                         170       180       190
                  ....*....|....*....|....*....|....
gi 1708953624 818 ECYRLLsaIYSKQEHYAKALEAIEKALQLKPKDP 851
Cdd:pfam17874 205 ERVRVR--LWLARGDLRAAVRWLRAAEPPSDADN 236
TPR_12 pfam13424
Tetratricopeptide repeat;
751-849 2.87e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 43.14  E-value: 2.87e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 751 ILSPLGALYYNTGRYEEALQVYREAaslqpsnkeirLALAQVLAMmgrtkeaekmtnhilNEDVECLECYRLLSAIYSKQ 830
Cdd:pfam13424   5 ALNNLAAVLRRLGRYDEALELLEKA-----------LEIARRLLG---------------PDHPLTATTLLNLGRLYLEL 58

                          90
                  ....*....|....*....
gi 1708953624 831 EHYAKALEAIEKALQLKPK 849
Cdd:pfam13424  59 GRYEEALELLERALALAEK 77
TPR_12 pfam13424
Tetratricopeptide repeat;
549-612 3.56e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 42.76  E-value: 3.56e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1708953624 549 AKVHYNYANFLKDQGRNVEAIYHYKTALKLY--------PRHASALNNLGTL---TKDVVEAKDYYRRALQLNPQ 612
Cdd:pfam13424   3 ATALNNLAAVLRRLGRYDEALELLEKALEIArrllgpdhPLTATTLLNLGRLyleLGRYEEALELLERALALAEK 77
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 759-891 4.27e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 43.83  E-value: 4.27e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 759 YYNTGRYEEALQVYREAASLQPSNKeirlalaqvlammgRTKEAekmtnhilnedveclecYRLLSAIYSKQEHYAKALE 838
Cdd:COG1729     3 LLKAGDYDEAIAAFKAFLKRYPNSP--------------LAPDA-----------------LYWLGEAYYALGDYDEAAE 51

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1708953624 839 AIEKALQLKPKDPKViSELFFTKGNQLREQNLLDKAFESYKRAVELNPDQAQA 891
Cdd:COG1729    52 AFEKLLKRYPDSPKA-PDALLKLGLSYLELGDYDKARATLEELIKKYPDSEAA 103
TPR_11 pfam13414
TPR repeat;
862-896 4.40e-05

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 41.30  E-value: 4.40e-05
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1708953624 862 GNQLREQNLLDKAFESYKRAVELNPDQAQAWMNMG 896
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLG 35
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 543-680 4.64e-05

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 46.44  E-value: 4.64e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 543 KTLPHNAKVHYNYANFLKDQGRNVEAIYHYKTALKLYPrHASALNNLGTL-TKDVVEAKDYYRRALQLNPQHNRALFNLG 621
Cdd:COG3071   187 RAERRDPELAAAYARALIALGDHDEAERLLREALKRQW-DPRLVRLYGRLqGGDPAKQLKRAEKWLKKHPNDPDLLLALG 265

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1708953624 622 NLLKSQGKKEEAVILLRDSIKYGPEfADAYSSLASLLAEQERLKEAEEVYKAGIENCPE 680
Cdd:COG3071   266 RLCLRNQLWGKAREYLEAALALRPS-AEAYAELARLLEQLGDPEEAAEHYRKALALALG 323
TPR_12 pfam13424
Tetratricopeptide repeat;
646-748 4.92e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 42.37  E-value: 4.92e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 646 EFADAYSSLASLLAEQERLKEAEEVYkagiencpessdlhnnygvflvdtgapERAVSHYRQAihLSPAHH---VAMVNL 722
Cdd:pfam13424   1 DVATALNNLAAVLRRLGRYDEALELL---------------------------EKALEIARRL--LGPDHPltaTTLLNL 51

                          90       100
                  ....*....|....*....|....*.
gi 1708953624 723 GRLHRSLGQNKEAEVWYKRALKVSRK 748
Cdd:pfam13424  52 GRLYLELGRYEEALELLERALALAEK 77
ycf3 CHL00033
photosystem I assembly protein Ycf3
 833-922 7.76e-05

photosystem I assembly protein Ycf3


Pssm-ID: 176974 [Multi-domain]  Cd Length: 168  Bit Score: 44.23  E-value: 7.76e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 833 YAKALEAIEKALQLKpKDPKVISELFFTKGNQLREQNLLDKAFESYKRAVELNPDQAQAWMNMGGIEHIKGSYITARG-- 910
Cdd:CHL00033   51 YAEALQNYYEAMRLE-IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGds 129

                          90       100
                  ....*....|....*....|....
gi 1708953624 911 ------------YYEKALQLVPNS 922
Cdd:CHL00033  130 eiaeawfdqaaeYWKQAIALAPGN 153
TPR_19 pfam14559
Tetratricopeptide repeat;
594-657 9.04e-05

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 41.42  E-value: 9.04e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1708953624 594 KDVVEAKDYYRRALQLNPQHNRALFNLGNLLKSQGKKEEAVILLRDSIKYGPEFADAYSSLASL 657
Cdd:pfam14559   2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLAKL 65
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 618-682 9.60e-05

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 41.17  E-value: 9.60e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1708953624 618 FNLGNLLKSQGKKEEAVILLRDSIKYG---PEFADAYSSLASLLAEQERLKEAEEVYKAGIENCPESS 682
Cdd:pfam13432   1 LALARAALRAGDYDDAAAALEAALARFpesPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
ycf3 CHL00033
photosystem I assembly protein Ycf3
 826-897 1.20e-04

photosystem I assembly protein Ycf3


Pssm-ID: 176974 [Multi-domain]  Cd Length: 168  Bit Score: 43.46  E-value: 1.20e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 826 IYSKQEHYAKALEAIEKALQLKPKDPK------VI----SELFFTKGNQLREQNLLDKAFESYKRAVELNPD---QAQAW 892
Cdd:CHL00033   81 IHTSNGEHTKALEYYFQALERNPFLPQalnnmaVIchyrGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGnyiEAQNW 160


                  ....*
gi 1708953624 893 MNMGG 897
Cdd:CHL00033  161 LKITG 165
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 604-920 1.33e-04

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 45.84  E-value: 1.33e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624  604 RRALQLNPQHNRALFNLGNLLKSQGKKEEAVILLrDSIKYG----PEFADAYSSLASLLAEQE-----RLKEAEEVYkag 674
Cdd:PRK11447   102 RTTMLLSTPEGRQALQQARLLATTGRTEEALASY-DKLFNGappeLDLAVEYWRLVAKLPAQRpeainQLQRLNADY--- 177

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624  675 iencPESSDLHNNYGVFLVDTGAPERAVSHYRQaihlspahhVAMVNLGRlhrslgqNKEAEVWYKRAlkvsrKGEILSP 754
Cdd:PRK11447   178 ----PGNTGLRNTLALLLFSSGRRDEGFAVLEQ---------MAKSPAGR-------DAAAQLWYGQI-----KDMPVSD 232

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624  755 LG--ALYYNTGRYEEALQVyrEAASLQPSNKEIRLA----------LAQVLAmmGRTKEAEKMTNHILNEDVECLECYRL 822
Cdd:PRK11447   233 ASvaALQKYLQVFSDGDSV--AAARSQLAEQQKQLAdpafraraqgLAAVDS--GQGGKAIPELQQAVRANPKDSEALGA 308

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624  823 LSAIYSKQEHYAKALEAIEKALQLKPKDPKvISE-----------LFFTKGNQLREQNLLDKAFESYKRAVELNPDQAQA 891
Cdd:PRK11447   309 LGQAYSQQGDRARAVAQFEKALALDPHSSN-RDKwesllkvnrywLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYA 387

                          330       340
                   ....*....|....*....|....*....
gi 1708953624  892 WMNMGGIEHIKGSYITARGYYEKALQLVP 920
Cdd:PRK11447   388 VLGLGDVAMARKDYAAAERYYQQALRMDP 416
TPR_12 pfam13424
Tetratricopeptide repeat;
583-642 1.55e-04

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 40.83  E-value: 1.55e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1708953624 583 ASALNNLGTL---TKDVVEAKDYYRRALQL-----NPQHN---RALFNLGNLLKSQGKKEEAVILLRDSIK 642
Cdd:pfam13424   3 ATALNNLAAVlrrLGRYDEALELLEKALEIarrllGPDHPltaTTLLNLGRLYLELGRYEEALELLERALA 73
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 571-887 2.18e-04

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 44.52  E-value: 2.18e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 571 HYKTALKLYPRHAS-----ALNNLG-----TLTKDVVEAKDYYRRALQLNPQHNRA-LFNLGNLLKSQGKKEEAVILLRD 639
Cdd:COG3071    31 RYARAEKLLSKAAEhseapLLAYLLaaraaQALGDYERRDEYLAQALELAPEAELAvLLTRAELLLDQGQAEQALATLEA 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 640 SIKYGPEFADAYSSLASLLAEQERLKEAEEVY----KAGIENCPESSDLHNNYGVFLVDTGA--PERAVSHYRQ---AIH 710
Cdd:COG3071   111 LRAGAPRHPQVLRLLLQAYRQLGDWEELLELLpalrKHKALSAEEAQALERRAYLGLLRQAArdAEALKALWKAlprAER 190

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 711 LSPAHHVAMVNlgRLHRsLGQNKEAEVWYKRALKVSRKGEILSPLGALyyNTGRYEEALQVYREAASLQPSNKEIRLALA 790
Cdd:COG3071   191 RDPELAAAYAR--ALIA-LGDHDEAERLLREALKRQWDPRLVRLYGRL--QGGDPAKQLKRAEKWLKKHPNDPDLLLALG 265

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 791 QVlammgrtkeaekmtnhilnedvecleCYRllsaiyskQEHYAKALEAIEKALQLKPkDPKVISELfftkGNQLREQNL 870
Cdd:COG3071   266 RL--------------------------CLR--------NQLWGKAREYLEAALALRP-SAEAYAEL----ARLLEQLGD 306

                         330
                  ....*....|....*..
gi 1708953624 871 LDKAFESYKRAVELNPD 887
Cdd:COG3071   307 PEEAAEHYRKALALALG 323
Mgr3-like cd24145
Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; ...
 757-927 2.43e-04

Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; Mgr3 (also called mitochondrial genome-required protein 3) is a component of the mitochondrial inner membrane i-AAA protease supercomplex, which degrades misfolded mitochondrial proteins. The supercomplex is composed of Mgr1, Mgr3, and Yme1. Mgr3, together with Mgr1, functions in an adapter complex that targets substrates to the i-AAA protease for degradation.


Pssm-ID: 467945 [Multi-domain]  Cd Length: 307  Bit Score: 44.26  E-value: 2.43e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 757 ALYYNTGR--YEEALQVYREAasLQPSNKE-----------IRLALAQVLAMMGRTKEAEKMTNHILNEdveCLEcyRLL 823
Cdd:cd24145    14 ALYYESDKpdPQKALKYYKEA--LEQADELgmdpfsdevtgIRIKIAEMLEKLGMYKAAYEVLERLYLD---CLR--WTL 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 824 SAIYSKQEHYakaleaIEKALQLKPKdpkvISELffTKGNQLREQNLLDKAfesYKRAVELNPDQAQAWMNMGGIEHIKG 903
Cdd:cd24145    87 KDDESERGHL------IKRDLRISIK----LGEL--NKDSELGKWELRERL---LKKAVEILLKLGELWMSPSEVGAFLE 151

                         170       180
                  ....*....|....*....|....*..
gi 1708953624 904 SYITAR---GYYEKALQLVPNSKLLKE 927
Cdd:cd24145   152 ELATAYdlyGRFCLALPLYMQALSLKG 178
TPR_14 pfam13428
Tetratricopeptide repeat;
755-792 2.55e-04

Tetratricopeptide repeat;


Pssm-ID: 463874 [Multi-domain]  Cd Length: 44  Bit Score: 39.33  E-value: 2.55e-04
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1708953624 755 LGALYYNTGRYEEALQVYREAASLQPSNKEIRLALAQV 792
Cdd:pfam13428   7 LARALLALGDPDEALALLERALALDPDDPEAWLALAQL 44
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 696-938 2.87e-04

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 44.13  E-value: 2.87e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 696 GAPERAVSHYRQAIHLSP-AHHVAMVNLGRLHRSLGQNKEAEVWYKRALKVS-RKGEILSPLGALYYNTGRYEEALQVYR 773
Cdd:COG3071    64 GDYERRDEYLAQALELAPeAELAVLLTRAELLLDQGQAEQALATLEALRAGApRHPQVLRLLLQAYRQLGDWEELLELLP 143

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 774 -----------EAASLQ-------------------------PS----NKEIRLALAQVLAMMGRTKEAEKMTNHILNE- 812
Cdd:COG3071   144 alrkhkalsaeEAQALErraylgllrqaardaealkalwkalPRaerrDPELAAAYARALIALGDHDEAERLLREALKRq 223

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 813 -DVECLECYRLLsaiysKQEHYAKALEAIEKALQLKPKDPkvisELFFTKGNQLREQNLLDKAfesykravelnpdqaqa 891
Cdd:COG3071   224 wDPRLVRLYGRL-----QGGDPAKQLKRAEKWLKKHPNDP----DLLLALGRLCLRNQLWGKA----------------- 277

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 1708953624 892 wmnmggiehikgsyitaRGYYEKALQLVPNSKLLKEnLAKLdrLEKR 938
Cdd:COG3071   278 -----------------REYLEAALALRPSAEAYAE-LARL--LEQL 304
PRK12370 PRK12370
HilA/EilA family virulence transcriptional regulator;
867-944 3.87e-04

HilA/EilA family virulence transcriptional regulator;


Pssm-ID: 237080 [Multi-domain]  Cd Length: 553  Bit Score: 44.07  E-value: 3.87e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 867 EQNLLDKAFESYKRAVELNPDQAQAWMNMGGIEHIKGSYITARGYYEKALQLVPNSKLLKE----NLAKLDRLEKRFQEV 942
Cdd:PRK12370  316 KQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYyygwNLFMAGQLEEALQTI 395


                  ..
gi 1708953624 943 QE 944
Cdd:PRK12370  396 NE 397
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
552-673 4.51e-04

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 42.95  E-value: 4.51e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 552 HYNYANFLKDQGRNVEAIYHYKTALK-LYPRHASALNNLG---TLTKDVVEAKDYYRRALQLNPQHNR--ALFNLGNLLK 625
Cdd:COG4700    92 RVRLADALLELGRYDEAIELYEEALTgIFADDPHILLGLAqalFELGRYAEALETLEKLIAKNPDFKSsdAHLLYARALE 171

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1708953624 626 SQGKKEEAVILLRDSIKYGPeFADAYSSLASLLAEQERLKEAEEVYKA 673
Cdd:COG4700   172 ALGDLEAAEAELEALARRYS-GPEARYRYAKFLARQGRTAEAKELLEE 218
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 542-632 4.75e-04

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 41.97  E-value: 4.75e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 542 VKTLPHNAK-----VHYNYANFLKDQGRNVEAIYHYKTALKL----YPRhASALNNLGTL---TKDVVEAKDYYRRALQL 609
Cdd:PRK02603   23 LKILPINKKakeafVYYRDGMSAQADGEYAEALENYEEALKLeedpNDR-SYILYNMGIIyasNGEHDKALEYYHQALEL 101

                          90       100
                  ....*....|....*....|...
gi 1708953624 610 NPQHNRALFNLGNLLKSQGKKEE 632
Cdd:PRK02603  102 NPKQPSALNNIAVIYHKRGEKAE 124
COG3899 COG3899
Predicted ATPase [General function prediction only];
696-846 6.13e-04

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 43.69  E-value: 6.13e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624  696 GAPERAVSHYRQAihlspahhvamvnlGRLHRSLGQNKEAEVWYKRALKVS-------RKGEILSPLGALYYNTGRYEEA 768
Cdd:COG3899    699 GERDRAARLLLRA--------------ARRALARGAYAEALRYLERALELLppdpeeeYRLALLLELAEALYLAGRFEEA 764

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624  769 LQVYREA---------ASLQPSNKEIRLALAQVLAMM--GRTKEAEKMTNHIL------NEDVECLECYRLLSAIYSKQE 831
Cdd:COG3899    765 EALLERAlaaralaalAALRHGNPPASARAYANLGLLllGDYEEAYEFGELALalaerlGDRRLEARALFNLGFILHWLG 844

                          170
                   ....*....|....*
gi 1708953624  832 HYAKALEAIEKALQL 846
Cdd:COG3899    845 PLREALELLREALEA 859
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 818-849 8.89e-04

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 37.50  E-value: 8.89e-04
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1708953624 818 ECYRLLSAIYSKQEHYAKALEAIEKALQLKPK 849
Cdd:pfam07719   2 EALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 755-780 1.04e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 37.50  E-value: 1.04e-03
                          10        20
                  ....*....|....*....|....*.
gi 1708953624 755 LGALYYNTGRYEEALQVYREAASLQP 780
Cdd:pfam07719   7 LGLAYYKLGDYEEALEAYEKALELDP 32
TPR_1 pfam00515
Tetratricopeptide repeat;
755-782 1.12e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 37.40  E-value: 1.12e-03
                          10        20
                  ....*....|....*....|....*...
gi 1708953624 755 LGALYYNTGRYEEALQVYREAASLQPSN 782
Cdd:pfam00515   7 LGNAYFKLGKYDEALEYYEKALELNPNN 34
COG3899 COG3899
Predicted ATPase [General function prediction only];
598-846 1.30e-03

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 42.92  E-value: 1.30e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624  598 EAKDYYRRALQLNP------QHNRALFNLGNLLKSQGKKEEAVILLRDSIKygpefADAYSSLASLlaeqerlkeaeevy 671
Cdd:COG3899    723 EALRYLERALELLPpdpeeeYRLALLLELAEALYLAGRFEEAEALLERALA-----ARALAALAAL-------------- 783

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624  672 KAGieNCPESSDLHNNYGVFLVdtGAPERAVSHYRQAIHLSPAHH------VAMVNLGRLHRSLGQNKEAEVWYKRALKV 745
Cdd:COG3899    784 RHG--NPPASARAYANLGLLLL--GDYEEAYEFGELALALAERLGdrrleaRALFNLGFILHWLGPLREALELLREALEA 859

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624  746 SRKGEILSPLGALYYNTGRYEEALQVYREAASLQPSNKEIRLALAQVLAMMGRTKEAEKMtnHILNEDVECLECYRLLSA 825
Cdd:COG3899    860 GLETGDAALALLALAAAAAAAAAAAALAAAAAAAARLLAAAAAALAAAAAAAALAAAELA--RLAAAAAAAAALALAAAA 937

                          250       260
                   ....*....|....*....|.
gi 1708953624  826 IYSKQEHYAKALEAIEKALQL 846
Cdd:COG3899    938 AAAAAAALAAAAAAAALAAAL 958
FAT pfam02259
FAT domain; The FAT domain is named after FRAP, ATM and TRRAP.
 727-896 1.59e-03

FAT domain; The FAT domain is named after FRAP, ATM and TRRAP.


Pssm-ID: 396714 [Multi-domain]  Cd Length: 342  Bit Score: 41.95  E-value: 1.59e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 727 RSLGQNKEAEVWYKRAlKVSRKGeilsplgalyyntGRYEEALQVYREAASLQPSNK--EIRLALAQVLAMMGRTKEAEK 804
Cdd:pfam02259 141 DVYLGGYHAEMWLKFA-NLARKS-------------GRFSLAEKALLKLLGEDPEEWlpEVVYAYAKYLWPTGEQQEALL 206

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 805 MtnhiLNEDVECLecyrllsaiYSKQEHYAKALEAIEKalQLKPKDPKVISELFFTKG------NQLREQNLLDKAFESY 878
Cdd:pfam02259 207 K----LREFLSCY---------LQKNGELLSGLEVINP--TNLEEFTELLARCYLLKGkwqaalGQNWAEEKSEEILQAY 271

                         170
                  ....*....|....*...
gi 1708953624 879 KRAVELNPDQAQAWMNMG 896
Cdd:pfam02259 272 LLATQFDPSWYKAWHTWA 289
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 755-782 1.61e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 36.66  E-value: 1.61e-03
                           10        20
                   ....*....|....*....|....*...
gi 1708953624  755 LGALYYNTGRYEEALQVYREAASLQPSN 782
Cdd:smart00028   7 LGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR_MalT pfam17874
MalT-like TPR region; This entry contains a series of TPR repeats.
 695-846 2.11e-03

MalT-like TPR region; This entry contains a series of TPR repeats.


Pssm-ID: 436107 [Multi-domain]  Cd Length: 336  Bit Score: 41.53  E-value: 2.11e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 695 TGAPERAVSHYRQAIHLSP--AHHVAMV---NLGRLHRSLGQNKEAEVWYKRALKVSRKGEI-------LSPLGALYYNT 762
Cdd:pfam17874  14 KGDAERALELAEQALALLPedDLLARGLatfVLGEAYLCLGDLDAALQAMREAEALARRADSphvtlwaLLQQGEILRAQ 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 763 GRYEEALQVYREAASLQPSNKEIRL--------ALAQVLAMMGRTKEAE-----------KMTNHILnedvecLECYRLL 823
Cdd:pfam17874  94 GRLHQALETYQQALQLARDHGLQHLplhgfllvGLADLLYEWNDLEEAEqhaqqgiqlgrQWEPDAA------VDAYVLL 167

                         170       180
                  ....*....|....*....|...
gi 1708953624 824 SAIYSKQEHYAKALEAIEKALQL 846
Cdd:pfam17874 168 ARIALAQGELEEALTLLRRAELL 190
TPR_11 pfam13414
TPR repeat;
556-590 2.23e-03

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 36.68  E-value: 2.23e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1708953624 556 ANFLKDQGRNVEAIYHYKTALKLYPRHASALNNLG 590
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLG 35
BTAD smart01043
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. ...
 696-802 2.47e-03

Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats.


Pssm-ID: 198111 [Multi-domain]  Cd Length: 145  Bit Score: 39.21  E-value: 2.47e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624  696 GAPERAVSHYRQAIHLSPAHHVAMVNLGRLHRSlgqnkEAEVWYKRALkvsrkgEILSPLGALYYNTGRYEEALQVYREA 775
Cdd:smart01043  19 ADPEAALALLEAALALYRGPLLADVPDEDWAEA-----ERERLRELRL------EALEALAEALLALGRHEEALALLERL 87

                           90       100
                   ....*....|....*....|....*..
gi 1708953624  776 ASLQPSNKEIRLALAQVLAMMGRTKEA 802
Cdd:smart01043  88 LALDPLRERLHRLLMRALYRAGRRAEA 114
TPR_19 pfam14559
Tetratricopeptide repeat;
696-744 2.51e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 37.18  E-value: 2.51e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1708953624 696 GAPERAVSHYRQAIHLSPAHHVAMVNLGRLHRSLGQNKEAEVWYKRALK 744
Cdd:pfam14559   2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPA 50
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 546-616 2.70e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 38.43  E-value: 2.70e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1708953624 546 PHNAKVHYNYANFLKDQGRNVEAIYHYKTALKLYPRH---ASALNNLGTL---TKDVVEAKDYYRRALQLNPQHNRA 616
Cdd:COG1729    27 PLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSpkaPDALLKLGLSyleLGDYDKARATLEELIKKYPDSEAA 103
PRK10370 PRK10370
formate-dependent nitrite reductase complex subunit NrfG; Provisional
 755-846 2.70e-03

formate-dependent nitrite reductase complex subunit NrfG; Provisional


Pssm-ID: 182415 [Multi-domain]  Cd Length: 198  Bit Score: 40.27  E-value: 2.70e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 755 LGALYYNTGRYEEALQVYREAASLQPSNKEIRLALAQVL---AMMGRTKEAEKMTNHILNEDVECLECYRLLSAIYSKQE 831
Cdd:PRK10370   79 LGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLyyqAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQA 158

                          90
                  ....*....|....*
gi 1708953624 832 HYAKALEAIEKALQL 846
Cdd:PRK10370  159 DYAQAIELWQKVLDL 173
TPR_10 pfam13374
Tetratricopeptide repeat;
718-748 2.71e-03

Tetratricopeptide repeat;


Pssm-ID: 463861 [Multi-domain]  Cd Length: 42  Bit Score: 36.33  E-value: 2.71e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1708953624 718 AMVNLGRLHRSLGQNKEAEVWYKRALKVSRK 748
Cdd:pfam13374   4 SLNNLANALRAQGRYDEAEELLEEALAIRER 34
TPR_1 pfam00515
Tetratricopeptide repeat;
583-613 2.96e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 36.24  E-value: 2.96e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1708953624 583 ASALNNLGTL---TKDVVEAKDYYRRALQLNPQH 613
Cdd:pfam00515   1 AKALYNLGNAyfkLGKYDEALEYYEKALELNPNN 34
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 666-754 3.06e-03

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 39.66  E-value: 3.06e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 666 EAEEVYKAGI---ENCPESSDLHNNYGVFLVDTGAPERAVSHYRQAIHLSPAHHVAMVNLGRLHRSLG-------QNKEA 735
Cdd:PRK02603   53 EALENYEEALkleEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGekaeeagDQDEA 132

                          90
                  ....*....|....*....
gi 1708953624 736 EVWYKRALKVSRKGEILSP 754
Cdd:PRK02603  133 EALFDKAAEYWKQAIRLAP 151
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 549-581 3.16e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 35.96  E-value: 3.16e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1708953624 549 AKVHYNYANFLKDQGRNVEAIYHYKTALKLYPR 581
Cdd:pfam07719   1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
TPR_5 pfam12688
Tetratrico peptide repeat; BH0479 of Bacillus halodurans is a hypothetical protein which ...
 598-667 3.26e-03

Tetratrico peptide repeat; BH0479 of Bacillus halodurans is a hypothetical protein which contains a tetratrico peptide repeat (TPR) structural motif. The TPR motif is often involved in mediating protein-protein interactions. This protein is likely to function as a dimer. The first 48 amino acids are not present in the clone construct. This Pfam entry includes tetratricopeptide-like repeats not detected by the pfam00515, pfam07719, pfam07720 and pfam07221 models.


Pssm-ID: 403783 [Multi-domain]  Cd Length: 119  Bit Score: 38.28  E-value: 3.26e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1708953624 598 EAKDYYRRALQ---LNPQHNRALFNLGNLLKSQGKKEEAVILLRDSIKYGP-EFADAYSSLASL-LAEQERLKEA 667
Cdd:pfam12688  19 RAVPLYRRALAnglDGSRRRQATIQLASSLRNLGEPEDALALLRAEATDPGdELDDALAAFLALcLADLGREREA 93
TPR_17 pfam13431
Tetratricopeptide repeat;
602-634 4.53e-03

Tetratricopeptide repeat;


Pssm-ID: 433201 [Multi-domain]  Cd Length: 34  Bit Score: 35.60  E-value: 4.53e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1708953624 602 YYRRALQLNPQHNRALFNLGNLLKSQGKKEEAV 634
Cdd:pfam13431   1 LYLKALELDPNNADAYYNLAVLLLELGQSETAL 33
COG3899 COG3899
Predicted ATPase [General function prediction only];
696-839 4.60e-03

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 41.00  E-value: 4.60e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624  696 GAPERAVSHYRQAIHLSPAHHVA------MVNLGRLHRSLGQNKEAEVWYKRALKVSRKGEILS------PLGALYYNT- 762
Cdd:COG3899    719 GAYAEALRYLERALELLPPDPEEeyrlalLLELAEALYLAGRFEEAEALLERALAARALAALAAlrhgnpPASARAYANl 798

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624  763 -----GRYEEALQVYREAASL------QPSNKEIRLALAQVLAMMGRTKEAEKMTNHILNEDVECLECYRLLSAIYSKQE 831
Cdd:COG3899    799 gllllGDYEEAYEFGELALALaerlgdRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGDAALALLALAAAAA 878


                   ....*...
gi 1708953624  832 HYAKALEA 839
Cdd:COG3899    879 AAAAAAAL 886
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 818-850 5.24e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 35.50  E-value: 5.24e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 1708953624  818 ECYRLLSAIYSKQEHYAKALEAIEKALQLKPKD 850
Cdd:smart00028   2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR_1 pfam00515
Tetratricopeptide repeat;
818-850 5.72e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 35.09  E-value: 5.72e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1708953624 818 ECYRLLSAIYSKQEHYAKALEAIEKALQLKPKD 850
Cdd:pfam00515   2 KALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 859-922 5.85e-03

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 36.16  E-value: 5.85e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1708953624 859 FTKGNQLREQNLLDKAFESYKRAVELN---PDQAQAWMNMGGIEHIKGSYITARGYYEKALQLVPNS 922
Cdd:pfam13432   1 LALARAALRAGDYDDAAAALEAALARFpesPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGD 67
TPR_1 pfam00515
Tetratricopeptide repeat;
549-582 6.07e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 35.09  E-value: 6.07e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1708953624 549 AKVHYNYANFLKDQGRNVEAIYHYKTALKLYPRH 582
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR-S pfam20308
Tetratricopeptide Repeats-Sensor; This entry represents a sensor domain consisting of 7 TPR ...
 598-722 6.57e-03

Tetratricopeptide Repeats-Sensor; This entry represents a sensor domain consisting of 7 TPR repeats forming a tightly-wound solenoid structure harbouring a deep central pocket. The TPR-S binding pocket is lined with several conserved aromatic and polar residues predicted to bind a NAD+-derived nucleotide in prokaryotic NAD+-derived nucleotide-activated effector conflict systems. It has been acquired at the base of the choanoflagellate-animal lineage as a core component of the ASK signalosome.


Pssm-ID: 466458 [Multi-domain]  Cd Length: 105  Bit Score: 37.25  E-value: 6.57e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 598 EAKDYYRRALQLnPQHNRALFNLGNLL-KSQGKKEEAVILLRDSIKYGPEFADAYSSLASllaeqerlkeaeeVYK-AGI 675
Cdd:pfam20308   4 AAVELLEALLAL-PEDARAQEQLALALaRLPGDRDEALDVLEDLIERLGEDPETLGLLGR-------------IYKrLWL 69

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1708953624 676 ENCPESSDLhnnygvflvdtgapERAVSHYRQAIHLSPAHHvAMVNL 722
Cdd:pfam20308  70 ESAEDREAL--------------DQAIEAYRKAFELDPDDY-PGINA 101
TPR_19 pfam14559
Tetratricopeptide repeat;
730-792 6.65e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 36.02  E-value: 6.65e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1708953624 730 GQNKEAEVWYKRALKVSRK-GEILSPLGALYYNTGRYEEALQVYREAASLQPSNKEIRLALAQV 792
Cdd:pfam14559   2 GDYAEALELLEQALAEDPDnAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLAKL 65
TPR COG0790
TPR repeat [General function prediction only];
548-642 6.96e-03

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 39.14  E-value: 6.96e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 548 NAKVHYNYANFLKDqGRNVEAiyHYKTALKLYPR-----HASALNNLGTL-------TKDVVEAKDYYRRALQLNpqHNR 615
Cdd:COG0790   134 DADAQYNLGLLYLN-GEGVPK--DPAKAAEWYRKaaeqgDADAQYNLGVLyengrgvPKDPAKALEWYRKAAEQG--DAD 208

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1708953624 616 ALFNLGNLLkSQGK-----KEEAVILLRDSIK 642
Cdd:COG0790   209 AQYNLGRLY-LNGEgvekdLEKALRWLRKAAE 239
TPR_11 pfam13414
TPR repeat;
723-763 6.99e-03

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 35.14  E-value: 6.99e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1708953624 723 GRLHRSLGQNKEAEVWYKRALKVSRKG-EILSPLGALYYNTG 763
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNpEAYYNLGLAYYKLG 42
LcrH_SycD TIGR02552
type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in ...
 755-804 7.36e-03

type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role. In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.


Pssm-ID: 274197 [Multi-domain]  Cd Length: 135  Bit Score: 37.66  E-value: 7.36e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1708953624 755 LGALYYNTGRYEEALQVYREAASLQPSNKEIRLALAQVLAMMGRTKEAEK 804
Cdd:TIGR02552  57 LAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALK 106
TPR_MalT pfam17874
MalT-like TPR region; This entry contains a series of TPR repeats.
 749-888 8.10e-03

MalT-like TPR region; This entry contains a series of TPR repeats.


Pssm-ID: 436107 [Multi-domain]  Cd Length: 336  Bit Score: 39.60  E-value: 8.10e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 749 GEILSPLGALYYNTGRYEEALQVYREAASLQPSNKeiRLALAQVLAMMGRTkeaekmtNHILNEDVECLECYRLLSAIYS 828
Cdd:pfam17874   1 GEIAALRAQLAISKGDAERALELAEQALALLPEDD--LLARGLATFVLGEA-------YLCLGDLDAALQAMREAEALAR 71

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 829 KQEHYAKALEAIekaLQLkpkdpkviselfftkGNQLREQNLLDKAFESYKRAVELNPDQ 888
Cdd:pfam17874  72 RADSPHVTLWAL---LQQ---------------GEILRAQGRLHQALETYQQALQLARDH 113
PRK11788 PRK11788
tetratricopeptide repeat protein; Provisional
 698-805 8.17e-03

tetratricopeptide repeat protein; Provisional


Pssm-ID: 236983 [Multi-domain]  Cd Length: 389  Bit Score: 39.79  E-value: 8.17e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1708953624 698 PERAVSHYRQAIHLSPAHHVAMVNLGRLHRSLGQnkeaevwYKRALKVSRK---------GEILSPLGALYYNTGRYEEA 768
Cdd:PRK11788  196 LDAARALLKKALAADPQCVRASILLGDLALAQGD-------YAAAIEALERveeqdpeylSEVLPKLMECYQALGDEAEG 268

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1708953624 769 LQVYREAASLQPSNkEIRLALAQVLAMMGRTKEAEKM 805
Cdd:PRK11788  269 LEFLRRALEEYPGA-DLLLALAQLLEEQEGPEAAQAL 304
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 583-613 8.33e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 34.73  E-value: 8.33e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1708953624  583 ASALNNLGTL---TKDVVEAKDYYRRALQLNPQH 613
Cdd:smart00028   1 AEALYNLGNAylkLGDYDEALEYYEKALELDPNN 34
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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