|
Name |
Accession |
Description |
Interval |
E-value |
| Glyco_transf_41 |
pfam13844 |
Glycosyl transferase family 41; This family of glycosyltransferases includes O-linked ... |
300-846 |
0e+00 |
|
Glycosyl transferase family 41; This family of glycosyltransferases includes O-linked beta-N-acetylglucosamine (O-GlcNAc) transferase, an enzyme which catalyzes the addition of O-GlcNAc to serine and threonine residues. In addition to its function as an O-GlcNAc transferase, human OGT, also appears to proteolytically cleave the epigenetic cell-cycle regulator HCF-1.
Pssm-ID: 404688 Cd Length: 543 Bit Score: 1136.74 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 300 VCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKvhslmkINALHKPAYEHPKDL 379
Cdd:pfam13844 1 VCDWTDYESRMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHDFRKAIAARHANLCLEK------IQILHKPPYKFPKDL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 380 KASSGRLRIGYVSSDFGNHPTSHLMQSIPGMHNPEKFEVFCYALSPDDSTNFRVKVVAEAHHFTDLSQIPCNGKAADRIH 459
Cdd:pfam13844 75 SLSGGRLRIGYVSSDFGNHPTSHLMQSIPGFHDREKVEVFCYALSPDDGTNFRSKIARESEHFVDLSQIPCNGKAADRIH 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 460 QDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGAPFMDYIISDKETSPMEVAEQYSEKLAYMPNTFFIGDHA 539
Cdd:pfam13844 155 ADGIHILVNMNGYTKGARNEIFALRPAPIQVMWLGYPGTSGASFMDYIITDAVTSPLELADQYSEKLAYMPHTFFIGDHR 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 540 NMFPHLKKKAVIDFKSNG-HIFDNRIVLNGIDLKAFLDSLPDVKVIKMKC-DNNQEPTGDTNG-ALSMPVIPMNTAaEAI 616
Cdd:pfam13844 235 QMFPHLKERAIVTDKSDGtKVRDNVAVVNATDLKPLLEKTEVKDKVKEVVvVETTGNSRDSSKvEVVLPVIELPTT-EPI 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 617 INMINQGQIQVTINGFTVSNGLATTQINNKAATGEEMPRTIVVTTRSQYGLPEDSIVYCNFNQLYKIDPPTLQMWANILK 696
Cdd:pfam13844 314 ESMIQSGQIQTSVNGVVVQNGLATTQTNNKAATGEEVPSSIVVTTRQQYGLPDDAIVYCNFNQLYKIDPPTLEMWVNILK 393
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 697 RVPNSVLWLLRFPAVGEPNIQQYAQNMGLPGSRIIFSPVAPKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTM 776
Cdd:pfam13844 394 RVPNSVLWLLRFPAVGEPNILATAQELGIPPGRIVFSNVAPKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTL 473
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 777 PGETLASRVAASQLNCLGCPELIAQSRQEYEDVAVKLGSDMEYLKMVRARVWKQRICSPLFNTKQYTMDL 846
Cdd:pfam13844 474 PGETLASRVAASQLATLGCPELIAKSRQEYEDIAVKLGTDREYLKAIRAKVWKARTTSPLFNVKQYTQDL 543
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
73-857 |
0e+00 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 589.27 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 73 LRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGNVSEAEECYNTALRLCPTHAD 152
Cdd:COG3914 4 AALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLEL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 153 SLNNLanikREQGNIEEAVQLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM 232
Cdd:COG3914 84 AALLL----QALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 233 QDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKK 312
Cdd:COG3914 160 GRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEEL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 313 LvsivaDQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKvhslmkinalHKPAYEHPKDLKASSGRLRIGYVS 392
Cdd:COG3914 240 L-----AALARGPSELSPFALLYLPDDDPAELLALARAWAQLVAAA----------AAPELPPPPNPRDPDRKLRIGYVS 304
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 393 SDFGNHPTSHLMQSIPGMHNPEKFEVFCYALSPDDSTnFRVKVVAEAHHFTDLSQIPcNGKAADRIHQDGIHILVNMNGY 472
Cdd:COG3914 305 ADFRRHAVGYLLEPLLEHHDRSRFEIYAYSTGPDDDA-LTQRLRAAADHWRDIPGLS-DEEAAELIRADGIDILVDLSGH 382
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 473 TKGARNELFALRPAPIQAMWLGYPGTSGAPFMDYIISDKETSPMEVAEQYSEKLAYMPNTFFIGDhanmfPHlkkkavid 552
Cdd:COG3914 383 TAGNRLGVFALRPAPVQVSWLGYPGTTGLPAIDYFIADPYVLPPGAEAYYSEKLVRLPGSYLCYQ-----PN-------- 449
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 553 fksnghifdnrivlngidlkaflDSLPDVkvikmkcdnnqeptgdtngalsmPVIPmntaaeaiinminqgqiqvtingf 632
Cdd:COG3914 450 -----------------------DRAPEV-----------------------APLP------------------------ 459
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 633 tvsnglattqinnkaatgeemprtivvtTRSQYGLPEDSIVYCNFNQLYKIDPPTLQMWANILKRVPNSVLWLLRFP-AV 711
Cdd:COG3914 460 ----------------------------TRADLGLPEGAVVFGSFNNLYKITPEVFALWARILKAVPNSVLLLKGGGlPE 511
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 712 GEPNIQQYAQNMGLPGSRIIFSPVAPKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTMPGETLASRVAASQLN 791
Cdd:COG3914 512 ARERLRAAAAARGVDPDRLIFLPRLPRAEHLARYALADLFLDTFPYNGGTTTLEALWMGVPVVTLAGETFASRVGASLLT 591
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1655265159 792 CLGCPELIAQSRQEYEDVAVKLGSDMEYLKMVRARVWKQRICSPLFNTKQYTMDLERLYLQMWEHH 857
Cdd:COG3914 592 ALGLPELIATSEEEYVALAVALATDPELLAALRAKLRERRQTSPLFDTPRFARDLEAAYRQMWQRW 657
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
14-281 |
7.78e-54 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 188.40 E-value: 7.78e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 14 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAGYLRALSLSPNHAVVHGNLACVY 93
Cdd:COG2956 7 AALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDY 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 94 YEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGNVSEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVQL 173
Cdd:COG2956 87 LKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEA 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 174 YRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAfA 253
Cdd:COG2956 167 LEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS-D 245
|
250 260
....*....|....*....|....*...
gi 1655265159 254 DAHSNLASIHKDSGNIPEAIASYRTALK 281
Cdd:COG2956 246 DLLLALADLLERKEGLEAALALLERQLR 273
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
110-290 |
4.27e-50 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 176.74 E-value: 4.27e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 110 IELQPHFPDAYCNLANALKEKGNVSEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVQLYRKALEVFPEFAAAHS 189
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 190 NLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNI 269
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160
|
170 180
....*....|....*....|.
gi 1655265159 270 PEAIASYRTALKLKPDFPDAY 290
Cdd:COG0457 161 EEALELLEKLEAAALAALLAA 181
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
65-324 |
9.14e-50 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 176.84 E-value: 9.14e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 65 FDRAVAGYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGNVSEAEECYNTAL 144
Cdd:COG2956 24 PDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLL 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 145 RLCPTHADSLNNLANIKREQGNIEEAVQLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN 224
Cdd:COG2956 104 ELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLL 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 225 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDfPDAYCNLAHCLQivcdwt 304
Cdd:COG2956 184 LAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS-DDLLLALADLLE------ 256
|
250 260
....*....|....*....|
gi 1655265159 305 dYDERMKKLVSIVADQLEKN 324
Cdd:COG2956 257 -RKEGLEAALALLERQLRRH 275
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
76-282 |
2.77e-49 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 174.42 E-value: 2.77e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 76 LSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGNVSEAEECYNTALRLCPTHADSLN 155
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 156 NLANIKREQGNIEEAVQLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDV 235
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1655265159 236 QGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL 282
Cdd:COG0457 161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQAL 207
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
42-213 |
2.73e-48 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 171.73 E-value: 2.73e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 42 VTLDPNFLDAYINLGNVLKEARIFDRAVAGYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYC 121
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 122 NLANALKEKGNVSEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVQLYRKALEVFPEFAAAHSNLASVLQQQGKL 201
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160
|
170
....*....|..
gi 1655265159 202 QEALMHYKEAIR 213
Cdd:COG0457 161 EEALELLEKLEA 172
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
8-213 |
6.61e-48 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 170.57 E-value: 6.61e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 8 IETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAGYLRALSLSPNHAVVHG 87
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 88 NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGNVSEAEECYNTALRLCPTHADSLNNLANIKREQGNI 167
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1655265159 168 EEAVQLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 213
Cdd:COG0457 161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQA 206
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
4-249 |
1.54e-47 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 170.68 E-value: 1.54e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 4 YLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAGYLRALSLSPNHA 83
Cdd:COG2956 31 LEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDA 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 84 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGNVSEAEECYNTALRLCPTHADSLNNLANIKRE 163
Cdd:COG2956 111 EALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLE 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 164 QGNIEEAVQLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTfADAYSNMGNTLKEMQDVQGALQCYT 243
Cdd:COG2956 191 QGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS-DDLLLALADLLERKEGLEAALALLE 269
|
....*.
gi 1655265159 244 RAIQIN 249
Cdd:COG2956 270 RQLRRH 275
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
144-298 |
5.66e-46 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 165.18 E-value: 5.66e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 144 LRLCPTHADSLNNLANIKREQGNIEEAVQLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYS 223
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1655265159 224 NMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQ 298
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALE 155
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
93-348 |
7.25e-44 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 160.28 E-value: 7.25e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 93 YYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGNVSEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVQ 172
Cdd:COG2956 18 YLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEE 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 173 LYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF 252
Cdd:COG2956 98 LLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDC 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 253 ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLpsvhph 332
Cdd:COG2956 178 ARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLAL------ 251
|
250
....*....|....*.
gi 1655265159 333 hSMLYPLSHGFRKAIA 348
Cdd:COG2956 252 -ADLLERKEGLEAALA 266
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
1-214 |
8.42e-38 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 141.68 E-value: 8.42e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 1 MACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAGYLRALSLSP 80
Cdd:COG0457 28 IEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDP 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 81 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGNVSEAEECYNTALRLCPTHADSLNNLANI 160
Cdd:COG0457 108 DDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAA 187
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1655265159 161 KREQGNIEEAVQLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 214
Cdd:COG0457 188 LALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALY 241
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
123-294 |
9.58e-33 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 128.31 E-value: 9.58e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 123 LANALKEKGNVSEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVQLYRKALEVFPEFAAAHSNLASVLQQQGKLQ 202
Cdd:COG2956 14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLD 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 203 EALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL 282
Cdd:COG2956 94 RAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKL 173
|
170
....*....|..
gi 1655265159 283 KPDFPDAYCNLA 294
Cdd:COG2956 174 DPDCARALLLLA 185
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
6-289 |
7.59e-31 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 130.59 E-value: 7.59e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 6 KAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAGYLRALSLSPNHAVV 85
Cdd:TIGR02917 388 KATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASL 467
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 86 HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGNVSEAEECYNTALRLCPTHADSLNNLANIKREQG 165
Cdd:TIGR02917 468 HNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTG 547
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 166 NIEEAVQLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRA 245
Cdd:TIGR02917 548 NEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKL 627
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 1655265159 246 IQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDA 289
Cdd:TIGR02917 628 LALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEA 671
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
151-286 |
3.88e-30 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 116.06 E-value: 3.88e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 151 ADSLNNLANIKREQGNIEEAVQLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK 230
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 1655265159 231 EMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF 286
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
89-216 |
1.30e-28 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 111.82 E-value: 1.30e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 89 LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGNVSEAEECYNTALRLCPTHADSLNNLANIKREQGNIE 168
Cdd:COG4783 10 LAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYD 89
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1655265159 169 EAVQLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 216
Cdd:COG4783 90 EALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDP 137
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
118-252 |
6.53e-28 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 109.51 E-value: 6.53e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 118 DAYCNLANALKEKGNVSEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVQLYRKALEVFPEFAAAHSNLASVLQQ 197
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 1655265159 198 QGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF 252
Cdd:COG4783 85 AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
49-184 |
1.59e-27 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 108.36 E-value: 1.59e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 49 LDAYINLGNVLKEARIFDRAVAGYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALK 128
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 1655265159 129 EKGNVSEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVQLYRKALEVFPEF 184
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
1-179 |
8.67e-27 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 110.97 E-value: 8.67e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 1 MACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAGYLRALSLSP 80
Cdd:COG2956 96 EELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDP 175
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 81 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGNVSEAEECYNTALRLCPThADSLNNLANI 160
Cdd:COG2956 176 DCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS-DDLLLALADL 254
|
170
....*....|....*....
gi 1655265159 161 KREQGNIEEAVQLYRKALE 179
Cdd:COG2956 255 LERKEGLEAALALLERQLR 273
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
6-284 |
3.87e-26 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 115.57 E-value: 3.87e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 6 KAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNV-LKEARIfDRAVAGYLRALSLSPNHAV 84
Cdd:TIGR02917 456 KLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIdIQEGNP-DDAIQRFEKVLTIDPKNLR 534
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 85 VHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGNVSEAEECYNTALRLCPTHADSLNNLANIKREQ 164
Cdd:TIGR02917 535 AILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAA 614
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 165 GNIEEAVQLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTR 244
Cdd:TIGR02917 615 GDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKS 694
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 1655265159 245 AIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP 284
Cdd:TIGR02917 695 LQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP 734
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
2-274 |
9.67e-26 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 114.41 E-value: 9.67e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 2 ACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAGYLRALSLSPN 81
Cdd:TIGR02917 622 SSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK 701
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 82 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHfPDAYCNLANALKEKGNVSEAEECYNTALRLCPTHADSLNNLANIK 161
Cdd:TIGR02917 702 AALGFELEGDLYLRQKDYPAAIQAYRKALKRAPS-SQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELY 780
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 162 REQGNIEEAVQLYRKALEVFPEFAAAHSNLASVLQQQgKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQC 241
Cdd:TIGR02917 781 LAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLEL-KDPRALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPL 859
|
250 260 270
....*....|....*....|....*....|...
gi 1655265159 242 YTRAIQINPAFADAHSNLASIHKDSGNIPEAIA 274
Cdd:TIGR02917 860 LRKAVNIAPEAAAIRYHLALALLATGRKAEARK 892
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
37-213 |
2.18e-25 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 105.38 E-value: 2.18e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 37 HFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAGYLRALSLsPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF 116
Cdd:COG4785 28 ALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALAL-PDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 117 PDAYCNLANALKEKGNVSEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVQLYRKALEVFPEFAAAHSNL----- 191
Cdd:COG4785 107 AEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLylaer 186
|
170 180 190
....*....|....*....|....*....|....*..
gi 1655265159 192 ---------------ASVLQQQGKLQEALMHYKEAIR 213
Cdd:COG4785 187 kldpekalallledwATAYLLQGDTEEARELFKLALA 223
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
27-289 |
2.52e-25 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 112.87 E-value: 2.52e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 27 AQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAGYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTY 106
Cdd:TIGR02917 34 QKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDEL 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 107 RRAIEL-QPHFPDAYCNLANALKEKGNVSEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVQLYRKALEVFPEFA 185
Cdd:TIGR02917 114 PGKTLLdDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNV 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 186 AAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKD 265
Cdd:TIGR02917 194 DALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQ 273
|
250 260
....*....|....*....|....
gi 1655265159 266 SGNIPEAIASYRTALKLKPDFPDA 289
Cdd:TIGR02917 274 KKNYEDARETLQDALKSAPEYLPA 297
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
5-289 |
4.12e-25 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 112.10 E-value: 4.12e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 5 LK-AIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAgYLRALSL--SPN 81
Cdd:TIGR02917 45 LKnALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLD-ELPGKTLldDEG 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 82 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGNVSEAEECYNTALRLCPTHADSLNNLANIK 161
Cdd:TIGR02917 124 AAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLL 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 162 REQGNIEEAVQLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTfadaySNMGNTLKEMQDVQ----- 236
Cdd:TIGR02917 204 LSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPN-----SPLAHYLKALVDFQkknye 278
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 1655265159 237 GALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDA 289
Cdd:TIGR02917 279 DARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQA 331
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
102-222 |
5.26e-25 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 100.85 E-value: 5.26e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 102 AIDTYRRAIELQPHFPDAYCNLANALKEKGNVSEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVQLYRKALEVF 181
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 1655265159 182 PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAY 222
Cdd:COG4235 82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPAR 122
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
67-187 |
9.05e-25 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 100.47 E-value: 9.05e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 67 RAVAGYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGNVSEAEECYNTALRL 146
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 1655265159 147 CPTHADSLNNLANIKREQGNIEEAVQLYRKALEVFPEFAAA 187
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPA 121
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
119-322 |
4.26e-24 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 101.53 E-value: 4.26e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 119 AYCNLANALKEKGNVSEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVQLYRKALEVF------PEFAAAHSNLA 192
Cdd:COG4785 1 LYALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIdralalPDLAQLYYERG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 193 SVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEA 272
Cdd:COG4785 81 VAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELA 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1655265159 273 IASYRTALKLKPDFPDAYCNLAHCLQIVcdwtDYDERMKKLVSIVADQLE 322
Cdd:COG4785 161 IADLEKALELDPNDPERALWLYLAERKL----DPEKALALLLEDWATAYL 206
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
7-295 |
4.72e-24 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 108.63 E-value: 4.72e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 7 AIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGnVLK----EARifdRAVAGYLRALSLSPNH 82
Cdd:TIGR02917 355 ALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLG-ISKlsqgDPS---EAIADLETAAQLDPEL 430
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 83 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGNVSEAEECYNTALRLCPTHADSLNNLANIKR 162
Cdd:TIGR02917 431 GRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDI 510
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 163 EQGNIEEAVQLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCY 242
Cdd:TIGR02917 511 QEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAIL 590
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 1655265159 243 TRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAH 295
Cdd:TIGR02917 591 NEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLAD 643
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
15-150 |
7.59e-24 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 97.96 E-value: 7.59e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 15 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAGYLRALSLSPNHAVVHGNLACVYY 94
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 1655265159 95 EQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGNVSEAEECYNTALRLCPTH 150
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
169-290 |
1.42e-23 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 97.00 E-value: 1.42e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 169 EAVQLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI 248
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1655265159 249 NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAY 290
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPAR 122
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
135-262 |
1.81e-23 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 96.61 E-value: 1.81e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 135 EAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVQLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 214
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1655265159 215 SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASI 262
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASI 128
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
1-116 |
6.91e-23 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 95.26 E-value: 6.91e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 1 MACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAGYLRALSLSP 80
Cdd:COG4783 24 EALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDP 103
|
90 100 110
....*....|....*....|....*....|....*.
gi 1655265159 81 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF 116
Cdd:COG4783 104 EHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
34-152 |
1.77e-22 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 93.92 E-value: 1.77e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 34 AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAGYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 113
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81
|
90 100 110
....*....|....*....|....*....|....*....
gi 1655265159 114 PHFPDAYCNLANALKEKGNVSEAEECYNTALRLCPTHAD 152
Cdd:COG4235 82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAP 120
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
185-320 |
1.97e-22 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 94.10 E-value: 1.97e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 185 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHK 264
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 1655265159 265 DSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 320
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
44-182 |
3.49e-22 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 93.87 E-value: 3.49e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 44 LDPNFLDAYINLGNVLKEARIFDRAVAGYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNL 123
Cdd:COG5010 15 LLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNL 94
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 1655265159 124 ANALKEKGNVSEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVQLYRKALEVFP 182
Cdd:COG5010 95 ALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
92-183 |
5.97e-22 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 91.00 E-value: 5.97e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 92 VYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGNVSEAEEcYNTALRLCPTHADSLNNLANIKREQGNIEEAV 171
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|..
gi 1655265159 172 QLYRKALEVFPE 183
Cdd:COG3063 80 AYLERALELDPS 91
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
65-216 |
6.80e-22 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 93.10 E-value: 6.80e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 65 FDRAVAGYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGNVSEAEECYNTAL 144
Cdd:COG5010 2 RALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQAL 81
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1655265159 145 RLCPTHADSLNNLANIKREQGNIEEAVQLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 216
Cdd:COG5010 82 QLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
12-289 |
8.55e-22 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 101.70 E-value: 8.55e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 12 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAGYLRALSLSPNHAVVHGNLAC 91
Cdd:TIGR02917 122 EGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGD 201
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 92 VYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGNVSEAEECYNTALRLCPTH-----------------ADSL 154
Cdd:TIGR02917 202 LLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSplahylkalvdfqkknyEDAR 281
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 155 NNLANIKR-----------------EQGNIEEAVQLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 217
Cdd:TIGR02917 282 ETLQDALKsapeylpalllagaseyQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPD 361
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1655265159 218 FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDA 289
Cdd:TIGR02917 362 DPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRA 433
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
12-179 |
1.48e-21 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 94.21 E-value: 1.48e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 12 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAGYLRALSLSPNHAVVHGNLAC 91
Cdd:COG4785 70 PDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGI 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 92 VYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLanalkekgNVSEAEECYNTALRLCPTHADSLNNLanikreQGNIEEAV 171
Cdd:COG4785 150 ALYYLGRYELAIADLEKALELDPNDPERALWL--------YLAERKLDPEKALALLLEDWATAYLL------QGDTEEAR 215
|
....*...
gi 1655265159 172 QLYRKALE 179
Cdd:COG4785 216 ELFKLALA 223
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
160-251 |
2.57e-20 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 86.38 E-value: 2.57e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 160 IKREQGNIEEAVQLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMhYKEAIRISPTFADAYSNMGNTLKEMQDVQGAL 239
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|..
gi 1655265159 240 QCYTRAIQINPA 251
Cdd:COG3063 80 AYLERALELDPS 91
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
6-379 |
2.75e-20 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 96.69 E-value: 2.75e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 6 KAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAvAGYLRALSLS-PNHAV 84
Cdd:TIGR02917 184 EVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEA-EKHADALLKKaPNSPL 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 85 VHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGNVSEAEECYNTALRLCPTHADSLNNLANIKREQ 164
Cdd:TIGR02917 263 AHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRL 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 165 GNIEEAVQLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTR 244
Cdd:TIGR02917 343 GRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLET 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 245 AIQINPAFADA----------------------------------HSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAY 290
Cdd:TIGR02917 423 AAQLDPELGRAdlllilsylrsgqfdkalaaakklekkqpdnaslHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAA 502
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 291 CNLAhclqivcdwtDYDERMKKLvSIVADQLEKnrLPSVHPHH-SMLYPLShgfrkAIAERHGNlcldkvhSLMKINALH 369
Cdd:TIGR02917 503 ANLA----------RIDIQEGNP-DDAIQRFEK--VLTIDPKNlRAILALA-----GLYLRTGN-------EEEAVAWLE 557
|
410
....*....|
gi 1655265159 370 KPAYEHPKDL 379
Cdd:TIGR02917 558 KAAELNPQEI 567
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
101-250 |
3.44e-20 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 88.09 E-value: 3.44e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 101 LAIDTYRRAIELQPHFPDAYCNLANALKEKGNVSEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVQLYRKALEV 180
Cdd:COG5010 4 LEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL 83
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 181 FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINP 250
Cdd:COG5010 84 DPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
59-281 |
6.80e-20 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 89.20 E-value: 6.80e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 59 LKEARIFDRAVAGYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD---AYCNLANALKEKGNVSE 135
Cdd:COG4785 12 LALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDlaqLYYERGVAYDSLGDYDL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 136 AEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVQLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 215
Cdd:COG4785 92 AIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELD 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1655265159 216 PTFADAYSNMGNTLKEmQDVQGALQCYTRAIQINpafadahsnlasiHKDSGNIPEAIASYRTALK 281
Cdd:COG4785 172 PNDPERALWLYLAERK-LDPEKALALLLEDWATA-------------YLLQGDTEEARELFKLALA 223
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
168-284 |
1.03e-19 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 86.94 E-value: 1.03e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 168 EEAVQLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQ 247
Cdd:COG5010 37 TKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALA 116
|
90 100 110
....*....|....*....|....*....|....*..
gi 1655265159 248 INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP 284
Cdd:COG5010 117 LSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
194-285 |
1.54e-19 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 84.07 E-value: 1.54e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 194 VLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQcYTRAIQINPAFADAHSNLASIHKDSGNIPEAI 273
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|..
gi 1655265159 274 ASYRTALKLKPD 285
Cdd:COG3063 80 AYLERALELDPS 91
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1-120 |
2.40e-19 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 84.67 E-value: 2.40e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 1 MACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAGYLRALSLSP 80
Cdd:COG4235 3 IARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDP 82
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1655265159 81 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAY 120
Cdd:COG4235 83 DNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPAR 122
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
24-114 |
9.32e-19 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 81.76 E-value: 9.32e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 24 VFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAgYLRALSLSPNHAVVHGNLACVYYEQGLIDLAI 103
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|.
gi 1655265159 104 DTYRRAIELQP 114
Cdd:COG3063 80 AYLERALELDP 90
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
24-114 |
4.11e-18 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 82.32 E-value: 4.11e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 24 VFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAGYLRALSLSPNHAVVHGNLACVYYEQGLIDLAI 103
Cdd:COG5010 63 LYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAK 142
|
90
....*....|.
gi 1655265159 104 DTYRRAIELQP 114
Cdd:COG5010 143 AALQRALGTSP 153
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
203-294 |
5.20e-17 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 78.12 E-value: 5.20e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 203 EALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL 282
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90
....*....|..
gi 1655265159 283 KPDFPDAYCNLA 294
Cdd:COG4235 81 DPDNPEALYLLG 92
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
90-318 |
6.85e-17 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 85.52 E-value: 6.85e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 90 ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGNVSEAEECYNTALRLCPTHADSLNNLANIKREQGNIEE 169
Cdd:TIGR02917 29 AKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQ 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 170 AV-QLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI 248
Cdd:TIGR02917 109 VLdELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTA 188
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 249 NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAhclQIVCDWTDYDERMKKLVSIVA 318
Cdd:TIGR02917 189 DPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALA---TILIEAGEFEEAEKHADALLK 255
|
|
| gliding_GltE |
NF033758 |
adventurous gliding motility TPR repeat lipoprotein GltE; GltE (also called AglT) is a ... |
38-336 |
7.90e-17 |
|
adventurous gliding motility TPR repeat lipoprotein GltE; GltE (also called AglT) is a tetratricopeptide repeat protein with a lipoprotein signal peptide and a role in A-motility (adventurous gliding motility) in Myxococcus xanthus and other delta-proteobacteria.
Pssm-ID: 468174 [Multi-domain] Cd Length: 411 Bit Score: 83.72 E-value: 7.90e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 38 FEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAGYLRALSLSPnhavvhgnlacvyyeqglidlaidTYRRAIElqphfp 117
Cdd:NF033758 75 FKAALEADPNLAEAEYNLGVLAERQGKTDEAVARYKAALKKKP------------------------TLRQASE------ 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 118 daycNLANALKEKGNVSEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVQLYRKALEVFPEFAAA---------- 187
Cdd:NF033758 125 ----NLAVMAQNAGDVAGAVALYQDVLKRYPDDASSRARLAEIYRQTGDHDKAMELSRAALMRDPQSTTAlkvmmrsyld 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 188 ------------------------HSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYT 243
Cdd:NF033758 201 rkqlamaklvalravkidqndpelHHTVGLILLQEGDKDGARLQFKRALEVRADYVPSHVELAQLALDAEDYPGAEEHLR 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 244 RAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD-ERMKKLVSIVADQLE 322
Cdd:NF033758 281 RILQADGKNAAAHLNLGVAYKGQGQYDKAMQEYDEAEKLDPELAAIYLNRAIILHRVKDAPERAvELYKKYIAMAGGEVA 360
|
330
....*....|....
gi 1655265159 323 knrLPSVHPHHSML 336
Cdd:NF033758 361 ---LNAEAPVFGLL 371
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
118-289 |
2.79e-16 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 78.92 E-value: 2.79e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 118 DAYCNLANALKEKGNVSEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVQLYRKALEVFPEFAAAHSNLASVLQQ 197
Cdd:TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQ 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 198 QGKLQEALMHYKEAIRiSPTF---ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIA 274
Cdd:TIGR02521 112 QGKYEQAMQQFEQAIE-DPLYpqpARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARA 190
|
170
....*....|....*
gi 1655265159 275 SYRTALKLKPDFPDA 289
Cdd:TIGR02521 191 YLERYQQTYNQTAES 205
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
163-295 |
2.63e-15 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 76.22 E-value: 2.63e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 163 EQGNIEEAVQLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCY 242
Cdd:TIGR02521 43 EQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQF 122
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 1655265159 243 TRAIQIN--PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAH 295
Cdd:TIGR02521 123 EQAIEDPlyPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAE 177
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
172-297 |
5.61e-15 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 73.07 E-value: 5.61e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 172 QLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA 251
Cdd:COG5010 7 FDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPN 86
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1655265159 252 FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCL 297
Cdd:COG5010 87 NPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALL 132
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
4-145 |
9.03e-15 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 74.57 E-value: 9.03e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 4 YLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAGYLRALSLSPNHA 83
Cdd:COG4785 96 FDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDP 175
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1655265159 84 VVHGNLACVYYEQGlIDLAIDTYRRAIelqphfpdaycnlANALKEKGNVSEAEECYNTALR 145
Cdd:COG4785 176 ERALWLYLAERKLD-PEKALALLLEDW-------------ATAYLLQGDTEEARELFKLALA 223
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
38-311 |
4.82e-14 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 76.18 E-value: 4.82e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 38 FEKAVTLDPNFLDAYINLGNVLKEARI---FDRAVAGYLRALS---LSPNHAVVH---GNLACVY--YEQGLIDLaidty 106
Cdd:TIGR00990 280 LEDSNELDEETGNGQLQLGLKSPESKAdesYEEAARAFEKALDlgkLGEKEAIALnlrGTFKCLKgkHLEALADL----- 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 107 RRAIELQPHFPDAYCNLANALKEKGNVSEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVQLYRKALEVFPEFAA 186
Cdd:TIGR00990 355 SKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIF 434
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 187 AHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDS 266
Cdd:TIGR00990 435 SHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKA 514
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 1655265159 267 -------GNIPEAIASYRTALKLKPDFPDAYCNLAhclQIVCDWTDYDERMK 311
Cdd:TIGR00990 515 lalfqwkQDFIEAENLCEKALIIDPECDIAVATMA---QLLLQQGDVDEALK 563
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
93-309 |
4.91e-14 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 73.82 E-value: 4.91e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 93 YYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGNVSEAEECYNTALRLCPTH-ADSLNNLANIkrEQGniEEAV 171
Cdd:cd24142 10 LLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGgYEKYLYLGQL--SGG--EEAL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 172 QLYRKALEVfpefaaahsnLASVLQQQGKLQEALMHYKEAIRisPTFADAYSNMGntlkE--MQDV-------QGALQCY 242
Cdd:cd24142 86 QYYEKGIEI----------LEEELQALQAASAEAEEEAEELK--RKLSSALCALA----EiyMTDLcdepdaeQRCEELI 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1655265159 243 TRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL-KPDFPDAYCNLAHCLQIVCDWTDYDER 309
Cdd:cd24142 150 TKALELDPTNPEALQTLASLRISQQRPDEAKEALRRSLELwKDLKEEDEEEAEEDEAEEEDVPSYEFR 217
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
2-80 |
6.25e-14 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 70.37 E-value: 6.25e-14
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1655265159 2 ACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAGYLRALSLSP 80
Cdd:COG5010 75 ALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| C39_PA2778_fam |
NF033920 |
PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family ... |
117-216 |
1.13e-13 |
|
PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family cysteine peptidases, a group that includes many processing enzyme for peptide natural products such as lantibiotics and other bacteriocins. This family, more specifically, includes PA2778 as found in Pseudomonas aeruginosa. All members of the defining seed alignment are encoded in the vicinity of a homolog of PA2779 (see HMM NF033919). Note that the C-terminal region consists largely of tetratricopeptide repeats (TPR), so classification using this HMM must be based on comparing the top domain score to the second gathering threshold (GA2).
Pssm-ID: 468245 [Multi-domain] Cd Length: 255 Bit Score: 71.81 E-value: 1.13e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 117 PDAYCNLANALKEKGNVSEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVQLYRKALEVFPEFAAAHSNLASVLQ 196
Cdd:NF033920 156 PLAYLRAAQDLEQTGQPEAALAAYQTATKRWPDSWLAYFGLGNAAYAAGDYAAAAAAFRQAVERHPDSAAAWNNLAYALA 235
|
90 100
....*....|....*....|
gi 1655265159 197 QQGKLQEALMHYKEAIRISP 216
Cdd:NF033920 236 AQGCTAQARAAAECALALAP 255
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
231-322 |
2.36e-13 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 66.35 E-value: 2.36e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 231 EMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIAsYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERM 310
Cdd:COG3063 4 KLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYL 82
|
90
....*....|..
gi 1655265159 311 KKLVSIVADQLE 322
Cdd:COG3063 83 ERALELDPSALR 94
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
1-81 |
4.71e-13 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 65.58 E-value: 4.71e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 1 MACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHhFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAGYLRALSLSP 80
Cdd:COG3063 12 EEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDP 90
|
.
gi 1655265159 81 N 81
Cdd:COG3063 91 S 91
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
151-214 |
9.10e-13 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 64.33 E-value: 9.10e-13
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1655265159 151 ADSLNNLANIKREQGNIEEAVQLYRKALEVF--------PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 214
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEIArrllgpdhPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
27-181 |
1.04e-11 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 66.88 E-value: 1.04e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 27 AQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAGYLRALSLSPNHAVV--------HGNLACV-YYEQG 97
Cdd:cd24142 12 DQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGYEkylylgqlSGGEEALqYYEKG 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 98 ----------LIDLAIDTYRRAIELQPHFPDAYCNLA-----------NAlkEkgnvSEAEECYNTALRLCPTHADSLNN 156
Cdd:cd24142 92 ieileeelqaLQAASAEAEEEAEELKRKLSSALCALAeiymtdlcdepDA--E----QRCEELITKALELDPTNPEALQT 165
|
170 180
....*....|....*....|....*
gi 1655265159 157 LANIKREQGNIEEAVQLYRKALEVF 181
Cdd:cd24142 166 LASLRISQQRPDEAKEALRRSLELW 190
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
152-344 |
1.15e-11 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 66.50 E-value: 1.15e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 152 DSLNNLANIKREQGNIEEAVQLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGntlk 230
Cdd:cd24142 1 DELLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDgGYEKYLYLG---- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 231 emQDVQG--ALQCYTRAIQI--------NPAFADAHSNLASIHKDsgnIPEAIAS----YRT------------------ 278
Cdd:cd24142 77 --QLSGGeeALQYYEKGIEIleeelqalQAASAEAEEEAEELKRK---LSSALCAlaeiYMTdlcdepdaeqrceelitk 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1655265159 279 ALKLKPDFPDAYCNLAHcLQIV-CDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHGFR 344
Cdd:cd24142 152 ALELDPTNPEALQTLAS-LRISqQRPDEAKEALRRSLELWKDLKEEDEEEAEEDEAEEEDVPSYEFR 217
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
93-187 |
2.35e-11 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 61.55 E-value: 2.35e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 93 YYEQGLIDLAIDTYRRAIELQP---HFPDAYCNLANALKEKGNVSEAEECYNTALRLCPTH---ADSLNNLANIKREQGN 166
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLKRYPnspLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSpkaPDALLKLGLSYLELGD 82
|
90 100
....*....|....*....|.
gi 1655265159 167 IEEAVQLYRKALEVFPEFAAA 187
Cdd:COG1729 83 YDKARATLEELIKKYPDSEAA 103
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
9-217 |
5.33e-11 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 66.16 E-value: 5.33e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 9 ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAGYLRALSLSPNHAVVHGN 88
Cdd:TIGR00990 325 KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYH 404
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 89 LACVYYEQGLIDLAIDTYRRAIELQPHF----------------------------------PDAYCNLANALKEKGNVS 134
Cdd:TIGR00990 405 RAQLHFIKGEFAQAGKDYQKSIDLDPDFifshiqlgvtqykegsiassmatfrrckknfpeaPDVYNYYGELLLDQNKFD 484
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 135 EAEECYNTALRL-------CPTHADSLNNLANIKREQGNIEEAVQLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 207
Cdd:TIGR00990 485 EAIEKFDTAIELeketkpmYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKL 564
|
250
....*....|
gi 1655265159 208 YKEAIRISPT 217
Cdd:TIGR00990 565 FERAAELART 574
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
119-183 |
6.30e-11 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 58.94 E-value: 6.30e-11
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1655265159 119 AYCNLANALKEKGNVSEAEECYNTALRLC-----PTH---ADSLNNLANIKREQGNIEEAVQLYRKALEVFPE 183
Cdd:pfam13424 5 ALNNLAAVLRRLGRYDEALELLEKALEIArrllgPDHpltATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
126-216 |
1.52e-09 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 56.15 E-value: 1.52e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 126 ALKEKGNVSEAEECYNTALRLCPTH---ADSLNNLANIKREQGNIEEAVQLYRKALEVFPE---FAAAHSNLASVLQQQG 199
Cdd:COG1729 2 ALLKAGDYDEAIAAFKAFLKRYPNSplaPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLELG 81
|
90
....*....|....*..
gi 1655265159 200 KLQEALMHYKEAIRISP 216
Cdd:COG1729 82 DYDKARATLEELIKKYP 98
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
163-247 |
2.39e-09 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 55.77 E-value: 2.39e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 163 EQGNIEEAVQLYRKALEVFP--EFAA-AHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSNMGNTLKEMQDVQ 236
Cdd:COG1729 5 KAGDYDEAIAAFKAFLKRYPnsPLAPdALYWLGEAYYALGDYDEAAEAFEKLLKRypdSPKAPDALLKLGLSYLELGDYD 84
|
90
....*....|.
gi 1655265159 237 GALQCYTRAIQ 247
Cdd:COG1729 85 KARATLEELIK 95
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
238-297 |
2.76e-09 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 56.17 E-value: 2.76e-09
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 238 ALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCL 297
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEAL 61
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
183-251 |
3.33e-09 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 54.32 E-value: 3.33e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1655265159 183 EFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--------SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA 251
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
65-151 |
5.63e-09 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 54.61 E-value: 5.63e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 65 FDRAVAGYLRALSLSPNHAV---VHGNLACVYYEQGLIDLAIDTYRRAIELQP---HFPDAYCNLANALKEKGNVSEAEE 138
Cdd:COG1729 9 YDEAIAAFKAFLKRYPNSPLapdALYWLGEAYYALGDYDEAAEAFEKLLKRYPdspKAPDALLKLGLSYLELGDYDKARA 88
|
90
....*....|...
gi 1655265159 139 CYNTALRLCPTHA 151
Cdd:COG1729 89 TLEELIKKYPDSE 101
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
92-131 |
9.96e-09 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 51.70 E-value: 9.96e-09
10 20 30 40
....*....|....*....|....*....|....*....|
gi 1655265159 92 VYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKG 131
Cdd:pfam13414 3 AYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
|
|
| C39_PA2778_fam |
NF033920 |
PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family ... |
90-182 |
2.83e-08 |
|
PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family cysteine peptidases, a group that includes many processing enzyme for peptide natural products such as lantibiotics and other bacteriocins. This family, more specifically, includes PA2778 as found in Pseudomonas aeruginosa. All members of the defining seed alignment are encoded in the vicinity of a homolog of PA2779 (see HMM NF033919). Note that the C-terminal region consists largely of tetratricopeptide repeats (TPR), so classification using this HMM must be based on comparing the top domain score to the second gathering threshold (GA2).
Pssm-ID: 468245 [Multi-domain] Cd Length: 255 Bit Score: 55.63 E-value: 2.83e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 90 ACVYYEQ-GLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGNVSEAEECYNTALRLCPTHADSLNNLANIKREQGNIE 168
Cdd:NF033920 162 AAQDLEQtGQPEAALAAYQTATKRWPDSWLAYFGLGNAAYAAGDYAAAAAAFRQAVERHPDSAAAWNNLAYALAAQGCTA 241
|
90
....*....|....
gi 1655265159 169 EAVQLYRKALEVFP 182
Cdd:NF033920 242 QARAAAECALALAP 255
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
158-199 |
3.89e-08 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 50.16 E-value: 3.89e-08
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 1655265159 158 ANIKREQGNIEEAVQLYRKALEVFPEFAAAHSNLASVLQQQG 199
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
27-286 |
4.63e-08 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 57.02 E-value: 4.63e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 27 AQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAGYLRALSLSP-NHAVVHGnLACVYYEQG-------L 98
Cdd:PRK11447 363 KANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPgNTNAVRG-LANLYRQQSpekalafI 441
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 99 IDL------AIDTYRRAIELqphfpDAYCNLANALKEKGNVSEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVQ 172
Cdd:PRK11447 442 ASLsasqrrSIDDIERSLQN-----DRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADA 516
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 173 LYRKALEVFP-------------------EFAAAHSN-------------------------LASVLQQQGKLQEA--LM 206
Cdd:PRK11447 517 LMRRLAQQKPndpeqvyayglylsgsdrdRAALAHLNtlpraqwnsniqelaqrlqsdqvleTANRLRDSGKEAEAeaLL 596
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 207 HYKEA-IRISPTFADAYSNMGntlkemqDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAiasyRTALKLKPD 285
Cdd:PRK11447 597 RQQPPsTRIDLTLADWAQQRG-------DYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAA----RAQLAKLPA 665
|
.
gi 1655265159 286 F 286
Cdd:PRK11447 666 T 666
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
45-205 |
4.74e-08 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 56.85 E-value: 4.74e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 45 DPNFLDAYINLGNVLKEARIFDRAVA------GYLRALSLSPNHAVVHG---NLA-----CVYYEQGLiDLAIDTYRRAI 110
Cdd:NF040586 558 HPRTLLSANNLARDLRELGRYAEALDlleealERYREVLGGPDHPDTLRaakSLAvalrrAGRLEEAL-ELAEDTYERYR 636
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 111 ELQ-PHFPD---AYCNLANALKEKGNVSEA----EECYNT-ALRLCPTHADSL---NNLANIKREQGNIEEAVQLYRKAL 178
Cdd:NF040586 637 RRFgPDHPDtlaAALSLANDLRALGDADEArelaREVLDRyRRVLGEDHPFTLacrNNLAVLLRALGDPEEARELAEAAL 716
|
170 180 190
....*....|....*....|....*....|....*..
gi 1655265159 179 EVFPE----------FAAAhsNLASVLQQQGKLQEAL 205
Cdd:NF040586 717 EGLRErlgpdhpytlAAAV--NLANDLAALGDLDAAL 751
|
|
| TPR_MalT |
pfam17874 |
MalT-like TPR region; This entry contains a series of TPR repeats. |
27-205 |
6.38e-08 |
|
MalT-like TPR region; This entry contains a series of TPR repeats.
Pssm-ID: 436107 [Multi-domain] Cd Length: 336 Bit Score: 55.39 E-value: 6.38e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 27 AQGEIWLAIHHFEKAVTLDP--NFLD---AYINLG--NVLKEARifDRAVAGYLRALSLSPNHAVVHGN------LACVY 93
Cdd:pfam17874 13 SKGDAERALELAEQALALLPedDLLArglATFVLGeaYLCLGDL--DAALQAMREAEALARRADSPHVTlwallqQGEIL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 94 YEQGLIDLAIDTYRRAIELQP-----HFP---DAYCNLANALKEKGNVSEAEECYNTALRLC---PTHA--DSLNNLANI 160
Cdd:pfam17874 91 RAQGRLHQALETYQQALQLARdhglqHLPlhgFLLVGLADLLYEWNDLEEAEQHAQQGIQLGrqwEPDAavDAYVLLARI 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1655265159 161 KREQGNIEEAVQLYRKALEV---FPEFAAAHSNLASV----LQQQGKLQEAL 205
Cdd:pfam17874 171 ALAQGELEEALTLLRRAELLarqSFFHVDWLANAERVrvrlWLARGDLRAAV 222
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
156-216 |
9.84e-08 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 49.64 E-value: 9.84e-08
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1655265159 156 NLANIKREQGNIEEAVQLYRKALEVF---PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 216
Cdd:pfam13432 2 ALARAALRAGDYDDAAAALEAALARFpesPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAP 65
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
197-289 |
1.70e-07 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 50.38 E-value: 1.70e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 197 QQGKLQEALMHYKEAIRI---SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA---FADAHSNLASIHKDSGNIP 270
Cdd:COG1729 5 KAGDYDEAIAAFKAFLKRypnSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLELGDYD 84
|
90
....*....|....*....
gi 1655265159 271 EAIASYRTALKLKPDFPDA 289
Cdd:COG1729 85 KARATLEELIKKYPDSEAA 103
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
197-233 |
2.01e-07 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 47.85 E-value: 2.01e-07
10 20 30
....*....|....*....|....*....|....*..
gi 1655265159 197 QQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 233
Cdd:pfam13414 6 EQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
262-295 |
2.22e-07 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 47.85 E-value: 2.22e-07
10 20 30
....*....|....*....|....*....|....
gi 1655265159 262 IHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAH 295
Cdd:pfam13414 3 AYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGL 36
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
102-221 |
4.05e-07 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 54.09 E-value: 4.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 102 AIDTYRRAIELQPHFPDA------YCNLANALKEKGNVSEAEECYNTALRL-------------CPTHADSLNNLANIKR 162
Cdd:COG3899 724 ALRYLERALELLPPDPEEeyrlalLLELAEALYLAGRFEEAEALLERALAAralaalaalrhgnPPASARAYANLGLLLL 803
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1655265159 163 eqGNIEEAVQLYRKALEVFPEF------AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADA 221
Cdd:COG3899 804 --GDYEEAYEFGELALALAERLgdrrleARALFNLGFILHWLGPLREALELLREALEAGLETGDA 866
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
122-182 |
4.95e-07 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 47.72 E-value: 4.95e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1655265159 122 NLANALKEKGNVSEAEECYNTALRL---CPTHADSLNNLANIKREQGNIEEAVQLYRKALEVFP 182
Cdd:pfam13432 2 ALARAALRAGDYDDAAAALEAALARfpeSPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAP 65
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
117-150 |
8.82e-07 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 45.87 E-value: 8.82e-07
10 20 30
....*....|....*....|....*....|....
gi 1655265159 117 PDAYCNLANALKEKGNVSEAEECYNTALRLCPTH 150
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
131-230 |
1.50e-06 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 49.29 E-value: 1.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 131 GNVSEAEECYNTALRLCPTHAD---SLNNLANIKREQGNIEEAVQLYRKALEVFPEFAAAHSNLASVL-------QQQGK 200
Cdd:PRK02603 49 GEYAEALENYEEALKLEEDPNDrsyILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYhkrgekaEEAGD 128
|
90 100 110
....*....|....*....|....*....|....*..
gi 1655265159 201 LQEALMHY-------KEAIRISPtfaDAYSNMGNTLK 230
Cdd:PRK02603 129 QDEAEALFdkaaeywKQAIRLAP---NNYIEAQNWLK 162
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
117-150 |
1.77e-06 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 45.13 E-value: 1.77e-06
10 20 30
....*....|....*....|....*....|....
gi 1655265159 117 PDAYCNLANALKEKGNVSEAEECYNTALRLCPTH 150
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
162-289 |
2.16e-06 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 51.78 E-value: 2.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 162 REQGNIEEAVQLYRKALEVFPEF------AAAHSNLASVLQQQGKLQEALMHYKEAIRI-------------SPTFADAY 222
Cdd:COG3899 716 LARGAYAEALRYLERALELLPPDpeeeyrLALLLELAEALYLAGRFEEAEALLERALAAralaalaalrhgnPPASARAY 795
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1655265159 223 SNMGNTLkeMQDVQGALQCYTRAIQINPAF------ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDA 289
Cdd:COG3899 796 ANLGLLL--LGDYEEAYEFGELALALAERLgdrrleARALFNLGFILHWLGPLREALELLREALEAGLETGDA 866
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
151-184 |
2.86e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 44.33 E-value: 2.86e-06
10 20 30
....*....|....*....|....*....|....
gi 1655265159 151 ADSLNNLANIKREQGNIEEAVQLYRKALEVFPEF 184
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
61-332 |
3.01e-06 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 51.07 E-value: 3.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 61 EARIFDRAV-AGYLRALSlsPNHA---VVHGNLACVY-----YEQGLiDLAIDTYRRAIELQPhfPD------AYCNLAN 125
Cdd:NF040586 496 EALELDEETlERHRRVFG--EDHPrtlRAANNLAVSLrllgdYREAL-ELDREVLRRRRRVLG--PDhprtllSANNLAR 570
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 126 ALKEKGNVSEA----EECYNTALRLC--PTHADSLN---NLANIKREQGNIEEAVQL----YRKALEVF----PEFAAAH 188
Cdd:NF040586 571 DLRELGRYAEAldllEEALERYREVLggPDHPDTLRaakSLAVALRRAGRLEEALELaedtYERYRRRFgpdhPDTLAAA 650
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 189 SNLASVLQQQGKLQEALMHYKEAIRISP---------TFAdAYSNMGNTLKEMQDVQGALQCYTRAI-QINPAFADAH-- 256
Cdd:NF040586 651 LSLANDLRALGDADEARELAREVLDRYRrvlgedhpfTLA-CRNNLAVLLRALGDPEEARELAEAALeGLRERLGPDHpy 729
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 257 -----SNLASIHKDSGNIPEAIAS---------YRTALKLKPDFPD---AYCNLAHCLQIvcdwTDYDERMKKLVSIVAD 319
Cdd:NF040586 730 tlaaaVNLANDLAALGDLDAALGEealerlrrlLGEDLRAGPDHPDtlaCAANLALDLRA----TGRTEEAEELRADTLA 805
|
330
....*....|...
gi 1655265159 320 QLEKnRLPSVHPH 332
Cdd:NF040586 806 RLRR-VLGPDHPD 817
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
219-250 |
3.73e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 44.33 E-value: 3.73e-06
10 20 30
....*....|....*....|....*....|..
gi 1655265159 219 ADAYSNMGNTLKEMQDVQGALQCYTRAIQINP 250
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNP 32
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
226-267 |
4.01e-06 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 44.38 E-value: 4.01e-06
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 1655265159 226 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSG 267
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
151-184 |
4.08e-06 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 43.97 E-value: 4.08e-06
10 20 30
....*....|....*....|....*....|....
gi 1655265159 151 ADSLNNLANIKREQGNIEEAVQLYRKALEVFPEF 184
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
34-288 |
5.34e-06 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 50.47 E-value: 5.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 34 AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAGYLRALSLSPNH-----------------AVVHGNLAcvyYEQ 96
Cdd:PRK11447 288 AIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSsnrdkwesllkvnrywlLIQQGDAA---LKA 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 97 GLIDLAIDTYRRAIELQPHfpDAYC--NLANALKEKGNVSEAEECYNTALRLCPTHADSLNNLANIKREQGnieeavqly 174
Cdd:PRK11447 365 NNLAQAERLYQQARQVDNT--DSYAvlGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQS--------- 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 175 rkalevfPEFAAAHSNLASVLQQQ--GKLQEALMHykeairisptfaDAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF 252
Cdd:PRK11447 434 -------PEKALAFIASLSASQRRsiDDIERSLQN------------DRLAQQAEALENQGKWAQAAELQRQRLALDPGS 494
|
250 260 270
....*....|....*....|....*....|....*.
gi 1655265159 253 ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPD 288
Cdd:PRK11447 495 VWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPE 530
|
|
| SNAP |
cd15832 |
Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family; Members of the ... |
100-254 |
5.68e-06 |
|
Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family; Members of the soluble NSF attachment protein (SNAP) family are involved in intracellular membrane trafficking, including vesicular transport between the endoplasmic reticulum and Golgi apparatus. Higher eukaryotes contain three isoforms of SNAPs: alpha, beta, and gamma. Alpha-SNAP is universally present in eukaryotes and acts as an adaptor protein between SNARE (integral membrane SNAP receptor) and NSF for recruitment to the 20S complex. Beta-SNAP is brain-specific and shares high sequence identity (about 85%) with alpha-SNAP. Gamma-SNAP is weakly related (about 20-25% identity) to the two other isoforms, and is ubiquitous. It may help regulate the activity of the 20S complex. The X-ray structures of vertebrate gamma-SNAP and yeast Sec17, a SNAP family member, show similar all-helical structures consisting of an N-terminal extended twisted sheet of four Tetratricopeptide repeat (TPR)-like helical hairpins and a C-terminal helical bundle.
Pssm-ID: 276937 [Multi-domain] Cd Length: 278 Bit Score: 49.11 E-value: 5.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 100 DLAIDTYRRAIELQ-----PHfpDA---YCNLANALKeKGNVSEAEECYNTALRL------CPTHADSLNNLANI-KREQ 164
Cdd:cd15832 49 EEAGDAFLKAAECQlkldsKH--DAanaYVEAAKCYK-KVDPQEAVNCLEKAIEIytemgrFRQAAKHLKEIAELyENEL 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 165 GNIEEAVQLYRKALEVFP-EFAAAHSN-----LASVLQQQGKLQEALMHYKEAIRISptfadaysnMGNTL-----KE-- 231
Cdd:cd15832 126 GDLDKAIEAYEQAADYYEgEGANSLANkcylkVADLAAQLEDYDKAIEIYEQVARSS---------LENNLlkysaKDyf 196
|
170 180 190
....*....|....*....|....*....|..
gi 1655265159 232 ---------MQDVQGALQCYTRAIQINPAFAD 254
Cdd:cd15832 197 lkaglchlaAGDVVAAQRALEKYAELDPSFAG 228
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
15-48 |
6.64e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 43.56 E-value: 6.64e-06
10 20 30
....*....|....*....|....*....|....
gi 1655265159 15 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF 48
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
67-260 |
7.70e-06 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 49.86 E-value: 7.70e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 67 RAVAGYLRALSLSPNHA-----VVHGNLAcvyyeqGLIDLAIDTYRRAielqphfpdaycnlANALKEKGNVSEAEECYN 141
Cdd:COG3899 670 RRIARALEARGPEPLEErlfelAHHLNRA------GERDRAARLLLRA--------------ARRALARGAYAEALRYLE 729
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 142 TALRLCP------THADSLNNLANIKREQGNIEEAVQLYRKALEV-------------FPEFAAAHSNLASVLqqQGKLQ 202
Cdd:COG3899 730 RALELLPpdpeeeYRLALLLELAEALYLAGRFEEAEALLERALAAralaalaalrhgnPPASARAYANLGLLL--LGDYE 807
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1655265159 203 EALMHYKEAIRISPTF------ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLA 260
Cdd:COG3899 808 EAYEFGELALALAERLgdrrleARALFNLGFILHWLGPLREALELLREALEAGLETGDAALALL 871
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
151-180 |
7.81e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 43.64 E-value: 7.81e-06
10 20 30
....*....|....*....|....*....|
gi 1655265159 151 ADSLNNLANIKREQGNIEEAVQLYRKALEV 180
Cdd:pfam13374 2 ASSLNNLANALRAQGRYDEAEELLEEALAI 31
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
4-105 |
9.27e-06 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 49.70 E-value: 9.27e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 4 YLKAIETQPNFAVAWSNLGCVFnAQGEIWLAIHHFEKAVTL---DPNFLDAYinlGNVLKEARIFDRAVAGYLRALSLSP 80
Cdd:TIGR02917 793 YQTVVKKAPDNAVVLNNLAWLY-LELKDPRALEYAERALKLapnIPAILDTL---GWLLVEKGEADRALPLLRKAVNIAP 868
|
90 100
....*....|....*....|....*
gi 1655265159 81 NHAVVHGNLACVYYEQGLIDLAIDT 105
Cdd:TIGR02917 869 EAAAIRYHLALALLATGRKAEARKE 893
|
|
| PRK11788 |
PRK11788 |
tetratricopeptide repeat protein; Provisional |
34-250 |
9.62e-06 |
|
tetratricopeptide repeat protein; Provisional
Pssm-ID: 236983 [Multi-domain] Cd Length: 389 Bit Score: 49.04 E-value: 9.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 34 AIHHFEKAVTLDPNFLDAYINLGN-------------------------------VLKE-------ARIFDRAVAGYLRa 75
Cdd:PRK11788 54 AIDLFIEMLKVDPETVELHLALGNlfrrrgevdrairihqnllsrpdltreqrllALQElgqdylkAGLLDRAEELFLQ- 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 76 LSLSPNHAVVhgnlAcvyyEQGLIDL---------AIDTYRRAIELQP--------HFpdaYCNLANALKEKGNVSEAEE 138
Cdd:PRK11788 133 LVDEGDFAEG----A----LQQLLEIyqqekdwqkAIDVAERLEKLGGdslrveiaHF---YCELAQQALARGDLDAARA 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 139 CYNTALRLCPTHADSLNNLANIKREQGNIEEAVQLYRKALEVFPEFAA-AHSNLASVLQQQGKLQEALMHYKEAIRISPt 217
Cdd:PRK11788 202 LLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSeVLPKLMECYQALGDEAEGLEFLRRALEEYP- 280
|
250 260 270
....*....|....*....|....*....|...
gi 1655265159 218 FADAYSNMGNTLKEMQDVQGALQCYTRAIQINP 250
Cdd:PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLRRHP 313
|
|
| C39_PA2778_fam |
NF033920 |
PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family ... |
34-148 |
9.92e-06 |
|
PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family cysteine peptidases, a group that includes many processing enzyme for peptide natural products such as lantibiotics and other bacteriocins. This family, more specifically, includes PA2778 as found in Pseudomonas aeruginosa. All members of the defining seed alignment are encoded in the vicinity of a homolog of PA2779 (see HMM NF033919). Note that the C-terminal region consists largely of tetratricopeptide repeats (TPR), so classification using this HMM must be based on comparing the top domain score to the second gathering threshold (GA2).
Pssm-ID: 468245 [Multi-domain] Cd Length: 255 Bit Score: 47.93 E-value: 9.92e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 34 AIHHFEKAVTLDPNFLDAYINLGNvlkearifdravagylralslspnhavvhgnlacVYYEQGLIDLAIDTYRRAIELQ 113
Cdd:NF033920 175 ALAAYQTATKRWPDSWLAYFGLGN----------------------------------AAYAAGDYAAAAAAFRQAVERH 220
|
90 100 110
....*....|....*....|....*....|....*
gi 1655265159 114 PHFPDAYCNLANALKEKGNVSEAEECYNTALRLCP 148
Cdd:NF033920 221 PDSAAAWNNLAYALAAQGCTAQARAAAECALALAP 255
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
185-218 |
1.16e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 42.79 E-value: 1.16e-05
10 20 30
....*....|....*....|....*....|....
gi 1655265159 185 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 218
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
88-151 |
1.18e-05 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 43.86 E-value: 1.18e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1655265159 88 NLACVYYEQGLIDLAIDTYRRAIELQPHFPD---AYCNLANALKEKGNVSEAEECYNTALRLCPTHA 151
Cdd:pfam13432 2 ALARAALRAGDYDDAAAALEAALARFPESPDaaaALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
83-116 |
1.27e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 42.79 E-value: 1.27e-05
10 20 30
....*....|....*....|....*....|....
gi 1655265159 83 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF 116
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
6-114 |
1.31e-05 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 47.33 E-value: 1.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 6 KAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN----------FL-------------------------- 49
Cdd:TIGR02521 56 KALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNngdvlnnygtFLcqqgkyeqamqqfeqaiedplypqpa 135
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1655265159 50 DAYINLGNVLKEARIFDRAVAGYLRALSLSPNHAVVHGNLACVYYEQGLI---DLAIDTYRRAIELQP 114
Cdd:TIGR02521 136 RSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYkdaRAYLERYQQTYNQTA 203
|
|
| SNAP |
pfam14938 |
Soluble NSF attachment protein, SNAP; The soluble NSF attachment protein (SNAP) proteins are ... |
118-276 |
1.54e-05 |
|
Soluble NSF attachment protein, SNAP; The soluble NSF attachment protein (SNAP) proteins are involved in vesicular transport between the endoplasmic reticulum and Golgi apparatus. They act as adaptors between SNARE (integral membrane SNAP receptor) proteins and NSF (N-ethylmaleimide-sensitive factor). They are structurally similar to TPR repeats.
Pssm-ID: 405606 [Multi-domain] Cd Length: 273 Bit Score: 47.56 E-value: 1.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 118 DAYCNLANALKEKGNVSEAEECYNTALRlCPTHADSLNNLAN--------IKReqGNIEEAVQLYRKALEVFpefaaahs 189
Cdd:pfam14938 28 DLYIQAANAYKLAKNWEEAGEAFEKAAE-CQLKLGSKDEAANayveaakcYKK--VDPEEAVRALEKAIEIY-------- 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 190 nlasvlQQQGKLQEALMHYKEAirisptfADAYSNmgntlkEMQDVQGALQCYTRA---IQINPAFADAHSNL---ASIH 263
Cdd:pfam14938 97 ------TEMGRFRRAAKHKKEI-------AELYEQ------ELGDLEKAIEAYEQAadwYEGEGASALANKCYlkvADLS 157
|
170
....*....|...
gi 1655265159 264 KDSGNIPEAIASY 276
Cdd:pfam14938 158 AELEDYPKAIEIY 170
|
|
| PRK09782 |
PRK09782 |
bacteriophage N4 receptor, outer membrane subunit; Provisional |
233-326 |
1.61e-05 |
|
bacteriophage N4 receptor, outer membrane subunit; Provisional
Pssm-ID: 236624 [Multi-domain] Cd Length: 987 Bit Score: 48.76 E-value: 1.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 233 QDVQGALQCYTRAIQINPAfADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLqivCDWTDYDERMKK 312
Cdd:PRK09782 590 GQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYAL---WDSGDIAQSREM 665
|
90
....*....|....
gi 1655265159 313 LVSIVADQLEKNRL 326
Cdd:PRK09782 666 LERAHKGLPDDPAL 679
|
|
| SNAP |
cd15832 |
Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family; Members of the ... |
118-248 |
1.73e-05 |
|
Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family; Members of the soluble NSF attachment protein (SNAP) family are involved in intracellular membrane trafficking, including vesicular transport between the endoplasmic reticulum and Golgi apparatus. Higher eukaryotes contain three isoforms of SNAPs: alpha, beta, and gamma. Alpha-SNAP is universally present in eukaryotes and acts as an adaptor protein between SNARE (integral membrane SNAP receptor) and NSF for recruitment to the 20S complex. Beta-SNAP is brain-specific and shares high sequence identity (about 85%) with alpha-SNAP. Gamma-SNAP is weakly related (about 20-25% identity) to the two other isoforms, and is ubiquitous. It may help regulate the activity of the 20S complex. The X-ray structures of vertebrate gamma-SNAP and yeast Sec17, a SNAP family member, show similar all-helical structures consisting of an N-terminal extended twisted sheet of four Tetratricopeptide repeat (TPR)-like helical hairpins and a C-terminal helical bundle.
Pssm-ID: 276937 [Multi-domain] Cd Length: 278 Bit Score: 47.57 E-value: 1.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 118 DAYCNLANALKEKGNVSEAEECYNTAlRLCPTHADSLNNLAN--------IKReqGNIEEAVQLYRKALEVFPE---F-- 184
Cdd:cd15832 33 ELYEKAANAFKLAKNWEEAGDAFLKA-AECQLKLDSKHDAANayveaakcYKK--VDPQEAVNCLEKAIEIYTEmgrFrq 109
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1655265159 185 -AAAHSNLASVLQQQ-GKLQEALMHYKEAirisptfADAYSNMG-----NTLKE-MQDVQGALQCYTRAIQI 248
Cdd:cd15832 110 aAKHLKEIAELYENElGDLDKAIEAYEQA-------ADYYEGEGanslaNKCYLkVADLAAQLEDYDKAIEI 174
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
117-149 |
1.74e-05 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 42.12 E-value: 1.74e-05
10 20 30
....*....|....*....|....*....|...
gi 1655265159 117 PDAYCNLANALKEKGNVSEAEECYNTALRLCPT 149
Cdd:pfam07719 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
51-112 |
1.74e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 43.53 E-value: 1.74e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 51 AYINLGNVLKEARIFDRAVAGYLRALSL--------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 112
Cdd:pfam13424 5 ALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
|
|
| TPR_MalT |
pfam17874 |
MalT-like TPR region; This entry contains a series of TPR repeats. |
164-272 |
1.92e-05 |
|
MalT-like TPR region; This entry contains a series of TPR repeats.
Pssm-ID: 436107 [Multi-domain] Cd Length: 336 Bit Score: 47.69 E-value: 1.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 164 QGNIEEAVQLYRKALEvfpeFAAAHSN----------LASVLQQQGKLQEALMHYKEAIR--------ISPTFADAYSNM 225
Cdd:pfam17874 53 LGDLDAALQAMREAEA----LARRADSphvtlwallqQGEILRAQGRLHQALETYQQALQlardhglqHLPLHGFLLVGL 128
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 1655265159 226 GNTLKEMQDVQGALQCYTRAIQI-----NPAFADAHSNLASIHKDSGNIPEA 272
Cdd:pfam17874 129 ADLLYEWNDLEEAEQHAQQGIQLgrqwePDAAVDAYVLLARIALAQGELEEA 180
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
83-116 |
2.00e-05 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 42.05 E-value: 2.00e-05
10 20 30
....*....|....*....|....*....|....
gi 1655265159 83 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF 116
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
15-48 |
2.08e-05 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 42.05 E-value: 2.08e-05
10 20 30
....*....|....*....|....*....|....
gi 1655265159 15 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF 48
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
185-218 |
2.45e-05 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 41.66 E-value: 2.45e-05
10 20 30
....*....|....*....|....*....|....
gi 1655265159 185 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 218
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| TPR_17 |
pfam13431 |
Tetratricopeptide repeat; |
139-172 |
2.48e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 433201 [Multi-domain] Cd Length: 34 Bit Score: 41.76 E-value: 2.48e-05
10 20 30
....*....|....*....|....*....|....
gi 1655265159 139 CYNTALRLCPTHADSLNNLANIKREQGNIEEAVQ 172
Cdd:pfam13431 1 LYLKALELDPNNADAYYNLAVLLLELGQSETALQ 34
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
219-252 |
2.60e-05 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 41.66 E-value: 2.60e-05
10 20 30
....*....|....*....|....*....|....
gi 1655265159 219 ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF 252
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| TPR |
COG0790 |
TPR repeat [General function prediction only]; |
50-213 |
2.72e-05 |
|
TPR repeat [General function prediction only];
Pssm-ID: 440553 [Multi-domain] Cd Length: 241 Bit Score: 46.46 E-value: 2.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 50 DAYINLGNVLKEARI----FDRAVAGYLRALSLspNHAVVHGNLAcVYYEQGL-----IDLAIDTYRRAIELQphFPDAY 120
Cdd:COG0790 64 EAQYNLGLMYAEGRGvpkdYEKALEWFEKAAEQ--GDAEAQYNLG-LMYEEGLgvpqdYAKALEWYEKAAEQG--DADAQ 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 121 CNLANALKE----KGNVSEAEECYNTALRLcpTHADSLNNLANIKRE----QGNIEEAVQLYRKALEVfpEFAAAHSNLA 192
Cdd:COG0790 139 YNLGLLYLNgegvPKDPAKAAEWYRKAAEQ--GDADAQYNLGVLYENgrgvPKDPAKALEWYRKAAEQ--GDADAQYNLG 214
|
170 180
....*....|....*....|....*.
gi 1655265159 193 sVLQQQGK-----LQEALMHYKEAIR 213
Cdd:COG0790 215 -RLYLNGEgvekdLEKALRWLRKAAE 239
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
28-119 |
3.09e-05 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 43.83 E-value: 3.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 28 QGEIWLAIHHFEKAVTLDPN---FLDAYINLGNVLKEARIFDRAVAGYLRALSLSPNHAVVHG---NLACVYYEQGLIDL 101
Cdd:COG1729 6 AGDYDEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDallKLGLSYLELGDYDK 85
|
90
....*....|....*...
gi 1655265159 102 AIDTYRRAIELQPHFPDA 119
Cdd:COG1729 86 ARATLEELIKKYPDSEAA 103
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
253-286 |
3.89e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 41.25 E-value: 3.89e-05
10 20 30
....*....|....*....|....*....|....
gi 1655265159 253 ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF 286
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| Mgr3-like |
cd24145 |
Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; ... |
88-215 |
4.06e-05 |
|
Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; Mgr3 (also called mitochondrial genome-required protein 3) is a component of the mitochondrial inner membrane i-AAA protease supercomplex, which degrades misfolded mitochondrial proteins. The supercomplex is composed of Mgr1, Mgr3, and Yme1. Mgr3, together with Mgr1, functions in an adapter complex that targets substrates to the i-AAA protease for degradation.
Pssm-ID: 467945 [Multi-domain] Cd Length: 307 Bit Score: 46.57 E-value: 4.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 88 NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKgnvSEAEECYNTALRLCPTHADSLNNLANIKREQGNI 167
Cdd:cd24145 152 ELATAYDLYGRFCLALPLYMQALSLKGQILLSQANCHSLVLMN---NEAAELALHALRKPLSSTLIEASRLPQKSRDQLL 228
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1655265159 168 EEAVQLYRKALEVF---------PE----FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 215
Cdd:cd24145 229 EAALKWAQKALDVAksikpkdrdPEcdqaCALALYNLGVIAEMLGNLDEARKLYKEAISLA 289
|
|
| TPR_17 |
pfam13431 |
Tetratricopeptide repeat; |
105-138 |
5.08e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 433201 [Multi-domain] Cd Length: 34 Bit Score: 40.99 E-value: 5.08e-05
10 20 30
....*....|....*....|....*....|....
gi 1655265159 105 TYRRAIELQPHFPDAYCNLANALKEKGNVSEAEE 138
Cdd:pfam13431 1 LYLKALELDPNNADAYYNLAVLLLELGQSETALQ 34
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
74-148 |
5.66e-05 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 46.06 E-value: 5.66e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1655265159 74 RALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHfPDAYCNLANALKEKGNVSEAEECYNTALRLCP 148
Cdd:COG3071 249 KWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALALRPS-AEAYAELARLLEQLGDPEEAAEHYRKALALAL 322
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
117-247 |
5.91e-05 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 46.06 E-value: 5.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 117 PDAYCNLANALKEKGNVSEAEECYNTALRLCPtHADSLNNLANIkrEQGNIEEAVQLYRKALEVFPEFAAAHSNLASVLQ 196
Cdd:COG3071 193 PELAAAYARALIALGDHDEAERLLREALKRQW-DPRLVRLYGRL--QGGDPAKQLKRAEKWLKKHPNDPDLLLALGRLCL 269
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 1655265159 197 QQGKLQEALMHYKEAIRISPTfADAYSNMGNTLKEMQDVQGALQCYTRAIQ 247
Cdd:COG3071 270 RNQLWGKAREYLEAALALRPS-AEAYAELARLLEQLGDPEEAAEHYRKALA 319
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
164-204 |
6.05e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 41.80 E-value: 6.05e-05
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 1655265159 164 QGNIEEAVQLYRKALEVFPEFAAAHSNLASVLQQQGKLQEA 204
Cdd:pfam14559 1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEA 41
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
27-285 |
6.57e-05 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 46.06 E-value: 6.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 27 AQGEIWLAIHHFEKAVTLDPNFLDAYinlgnVLKEARI------FDRAVAGYLRALSLSPNHAVVhgnlacvyyeqglID 100
Cdd:COG3071 62 ALGDYERRDEYLAQALELAPEAELAV-----LLTRAELlldqgqAEQALATLEALRAGAPRHPQV-------------LR 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 101 LAIDTYRRAIElqphfPDAYCNLANALKEKGNVSEAE------ECYNTALRLCPTHADSLNNL----------------- 157
Cdd:COG3071 124 LLLQAYRQLGD-----WEELLELLPALRKHKALSAEEaqalerRAYLGLLRQAARDAEALKALwkalpraerrdpelaaa 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 158 -ANIKREQGNIEEAVQLYRKALEVFPefaaaHSNLASVLQQ--QGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 234
Cdd:COG3071 199 yARALIALGDHDEAERLLREALKRQW-----DPRLVRLYGRlqGGDPAKQLKRAEKWLKKHPNDPDLLLALGRLCLRNQL 273
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1655265159 235 VQGALQCYTRAIQINPAfADAHSNLASIHKDSGNIPEAIASYRTALKLKPD 285
Cdd:COG3071 274 WGKAREYLEAALALRPS-AEAYAELARLLEQLGDPEEAAEHYRKALALALG 323
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
124-165 |
6.65e-05 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 40.92 E-value: 6.65e-05
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 1655265159 124 ANALKEKGNVSEAEECYNTALRLCPTHADSLNNLANIKREQG 165
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
253-286 |
7.37e-05 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 40.51 E-value: 7.37e-05
10 20 30
....*....|....*....|....*....|....
gi 1655265159 253 ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF 286
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
34-211 |
9.40e-05 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 46.39 E-value: 9.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 34 AIHHFEKAVTLDP------NFLDAYINLGNVLKEARIFDRAVAGYLRALslspnHAVVHGNLACvyyeqglidlaidtyr 107
Cdd:COG3899 724 ALRYLERALELLPpdpeeeYRLALLLELAEALYLAGRFEEAEALLERAL-----AARALAALAA---------------- 782
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 108 RAIELQPHFPDAYCNLANALkeKGNVSEAEECYNTALRLCPTH------ADSLNNLANIKREQGNIEEAVQLYRKALEVF 181
Cdd:COG3899 783 LRHGNPPASARAYANLGLLL--LGDYEEAYEFGELALALAERLgdrrleARALFNLGFILHWLGPLREALELLREALEAG 860
|
170 180 190
....*....|....*....|....*....|
gi 1655265159 182 PEFAAAHSNLASVLQQQGKLQEALMHYKEA 211
Cdd:COG3899 861 LETGDAALALLALAAAAAAAAAAAALAAAA 890
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
198-262 |
9.98e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 41.03 E-value: 9.98e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1655265159 198 QGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASI 262
Cdd:pfam14559 1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLAKL 65
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
68-148 |
1.02e-04 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 43.89 E-value: 1.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 68 AVAGYLRALSLSPN---HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLA-------NALKEKGNVSEAE 137
Cdd:PRK02603 54 ALENYEEALKLEEDpndRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAviyhkrgEKAEEAGDQDEAE 133
|
90
....*....|....*...
gi 1655265159 138 ECYNT-------ALRLCP 148
Cdd:PRK02603 134 ALFDKaaeywkqAIRLAP 151
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
151-183 |
1.26e-04 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 39.81 E-value: 1.26e-04
10 20 30
....*....|....*....|....*....|...
gi 1655265159 151 ADSLNNLANIKREQGNIEEAVQLYRKALEVFPE 183
Cdd:pfam07719 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
4-179 |
1.34e-04 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 44.49 E-value: 1.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 4 YLKAIETQPNFAVAWSNLGCVFNAQGEIWLAihhfEKAVTLDPNFlDAYINLGNVLKEARIFDRAVAGYLRALSLSPNH- 82
Cdd:COG4700 49 VLPELRNSRDARRVQRAARNALDPGRELREL----EKALEFADTV-QNRVRLADALLELGRYDEAIELYEEALTGIFADd 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 83 -AVVHGnLACVYYEQGLIDLAIDTYRRAIELQPHF--PDAYCNLANALKEKGNVSEAEECYNTALRLCPtHADSLNNLAN 159
Cdd:COG4700 124 pHILLG-LAQALFELGRYAEALETLEKLIAKNPDFksSDAHLLYARALEALGDLEAAEAELEALARRYS-GPEARYRYAK 201
|
170 180
....*....|....*....|
gi 1655265159 160 IKREQGNIEEAVQLYRKALE 179
Cdd:COG4700 202 FLARQGRTAEAKELLEEILD 221
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
192-353 |
1.54e-04 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 45.46 E-value: 1.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 192 ASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASI--------- 262
Cdd:TIGR02917 29 AKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAyllqgkfqq 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 263 --------------------------HKDSGNIPEAIASYRTALKLKPDFPDAYCNLAhclQIVCDWTDYDERMKklvsI 316
Cdd:TIGR02917 109 vldelpgktllddegaaellalrglaYLGLGQLELAQKSYEQALAIDPRSLYAKLGLA---QLALAENRFDEARA----L 181
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1655265159 317 VADQLEKNrlPSVHPHHSML--YPLSHG--------FRKAIAERHGN 353
Cdd:TIGR02917 182 IDEVLTAD--PGNVDALLLKgdLLLSLGnielalaaYRKAIALRPNN 226
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
262-297 |
1.74e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 41.31 E-value: 1.74e-04
10 20 30
....*....|....*....|....*....|....*.
gi 1655265159 262 IHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCL 297
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLL 36
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
102-217 |
1.97e-04 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 45.46 E-value: 1.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 102 AIDTYRRAIELQPHFPDAYCNLANALKEKGNVSEAEEcyntALRLCPTHA-DSLN---NLANIKREQGNIEEAVQLYR-- 175
Cdd:PRK11447 622 ARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARA----QLAKLPATAnDSLNtqrRVALAWAALGDTAAAQRTFNrl 697
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 1655265159 176 ----KALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI---RISPT 217
Cdd:PRK11447 698 ipqaKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMvasGITPT 746
|
|
| BTAD |
smart01043 |
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. ... |
165-282 |
1.98e-04 |
|
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats.
Pssm-ID: 198111 [Multi-domain] Cd Length: 145 Bit Score: 42.29 E-value: 1.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 165 GNIEEAVQLYRKAL-----EVFPEFAAAhsnlASVLQQQGKLQEALMHYKEAIrisptfADAYSNMGntlkemqDVQGAL 239
Cdd:smart01043 19 ADPEAALALLEAALalyrgPLLADVPDE----DWAEAERERLRELRLEALEAL------AEALLALG-------RHEEAL 81
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 1655265159 240 QCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL 282
Cdd:smart01043 82 ALLERLLALDPLRERLHRLLMRALYRAGRRAEALRAYRRLRRL 124
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
253-285 |
3.05e-04 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 38.66 E-value: 3.05e-04
10 20 30
....*....|....*....|....*....|...
gi 1655265159 253 ADAHSNLASIHKDSGNIPEAIASYRTALKLKPD 285
Cdd:pfam07719 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
219-250 |
3.90e-04 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 38.27 E-value: 3.90e-04
10 20 30
....*....|....*....|....*....|..
gi 1655265159 219 ADAYSNMGNTLKEMQDVQGALQCYTRAIQINP 250
Cdd:pfam07719 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDP 32
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
224-285 |
3.99e-04 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 39.63 E-value: 3.99e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1655265159 224 NMGNTLKEMQDVQGALQCYTRAIQIN---PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD 285
Cdd:pfam13432 2 ALARAALRAGDYDDAAAALEAALARFpesPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPG 66
|
|
| TPR_8 |
pfam13181 |
Tetratricopeptide repeat; |
151-183 |
4.61e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 404131 [Multi-domain] Cd Length: 33 Bit Score: 38.15 E-value: 4.61e-04
10 20 30
....*....|....*....|....*....|...
gi 1655265159 151 ADSLNNLANIKREQGNIEEAVQLYRKALEVFPE 183
Cdd:pfam13181 1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
|
|
| TPR_17 |
pfam13431 |
Tetratricopeptide repeat; |
173-205 |
5.21e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 433201 [Multi-domain] Cd Length: 34 Bit Score: 38.29 E-value: 5.21e-04
10 20 30
....*....|....*....|....*....|...
gi 1655265159 173 LYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL 205
Cdd:pfam13431 1 LYLKALELDPNNADAYYNLAVLLLELGQSETAL 33
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
234-290 |
5.63e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 39.10 E-value: 5.63e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 1655265159 234 DVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAY 290
Cdd:pfam14559 3 DYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYA 59
|
|
| PRK11788 |
PRK11788 |
tetratricopeptide repeat protein; Provisional |
65-188 |
6.20e-04 |
|
tetratricopeptide repeat protein; Provisional
Pssm-ID: 236983 [Multi-domain] Cd Length: 389 Bit Score: 43.26 E-value: 6.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 65 FDRAVAGYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGNVSEAEECYNTA 143
Cdd:PRK11788 196 LDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPeYLSEVLPKLMECYQALGDEAEGLEFLRRA 275
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 1655265159 144 LRLCPThADSLNNLANIKREQGNIEEAVQLYRKALEVFPEFAAAH 188
Cdd:PRK11788 276 LEEYPG-ADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFH 319
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
151-281 |
6.30e-04 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 42.56 E-value: 6.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 151 ADSLNN---LANIKREQGNIEEAVQLYRKALE-VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF--ADAYSN 224
Cdd:COG4700 86 ADTVQNrvrLADALLELGRYDEAIELYEEALTgIFADDPHILLGLAQALFELGRYAEALETLEKLIAKNPDFksSDAHLL 165
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1655265159 225 MGNTLKEMQDVQGALQCYTRAIQINPaFADAHSNLASIHKDSGNIPEAIASYRTALK 281
Cdd:COG4700 166 YARALEALGDLEAAEAELEALARRYS-GPEARYRYAKFLARQGRTAEAKELLEEILD 221
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
88-215 |
6.54e-04 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 42.18 E-value: 6.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 88 NLACVYYEQGLIDLAIDTYRRAIE-LQPHFPDAYCNLANALKEKGNVSEAEECYNTALRLCPTHADS----LnnLANIKR 162
Cdd:COG4700 94 RLADALLELGRYDEAIELYEEALTgIFADDPHILLGLAQALFELGRYAEALETLEKLIAKNPDFKSSdahlL--YARALE 171
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1655265159 163 EQGNIEEAVQLYRKALEVFPeFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 215
Cdd:COG4700 172 ALGDLEAAEAELEALARRYS-GPEARYRYAKFLARQGRTAEAKELLEEILDEA 223
|
|
| TPR_14 |
pfam13428 |
Tetratricopeptide repeat; |
157-194 |
8.18e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 463874 [Multi-domain] Cd Length: 44 Bit Score: 37.79 E-value: 8.18e-04
10 20 30
....*....|....*....|....*....|....*...
gi 1655265159 157 LANIKREQGNIEEAVQLYRKALEVFPEFAAAHSNLASV 194
Cdd:pfam13428 7 LARALLALGDPDEALALLERALALDPDDPEAWLALAQL 44
|
|
| TPR_7 |
pfam13176 |
Tetratricopeptide repeat; |
153-180 |
8.23e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 433012 [Multi-domain] Cd Length: 36 Bit Score: 37.52 E-value: 8.23e-04
10 20
....*....|....*....|....*...
gi 1655265159 153 SLNNLANIKREQGNIEEAVQLYRKALEV 180
Cdd:pfam13176 1 ALLNLGRIYRKLGDYDEAISLYEQALAL 28
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
131-192 |
8.34e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 38.33 E-value: 8.34e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1655265159 131 GNVSEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVQLYRKALEVFPEFAAAHSNLA 192
Cdd:pfam14559 2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLA 63
|
|
| TPR_8 |
pfam13181 |
Tetratricopeptide repeat; |
118-148 |
8.47e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 404131 [Multi-domain] Cd Length: 33 Bit Score: 37.38 E-value: 8.47e-04
10 20 30
....*....|....*....|....*....|.
gi 1655265159 118 DAYCNLANALKEKGNVSEAEECYNTALRLCP 148
Cdd:pfam13181 2 EAYYNLGLIYLKLGDYEEAKEYYEKALELDP 32
|
|
| TPR_17 |
pfam13431 |
Tetratricopeptide repeat; |
207-240 |
8.53e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 433201 [Multi-domain] Cd Length: 34 Bit Score: 37.52 E-value: 8.53e-04
10 20 30
....*....|....*....|....*....|....
gi 1655265159 207 HYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQ 240
Cdd:pfam13431 1 LYLKALELDPNNADAYYNLAVLLLELGQSETALQ 34
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
2-113 |
9.28e-04 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 41.92 E-value: 9.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 2 ACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAGYLRALSLSPN 81
Cdd:COG0457 131 EAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKK 210
|
90 100 110
....*....|....*....|....*....|..
gi 1655265159 82 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 113
Cdd:COG0457 211 LAILTLAALAELLLLALALLLALRLAALALYQ 242
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
4-50 |
9.41e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 39.38 E-value: 9.41e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 1655265159 4 YLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLD 50
Cdd:COG3063 48 LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPSALR 94
|
|
| YfgM |
COG2976 |
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal ... |
157-251 |
1.02e-03 |
|
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal transduction mechanisms];
Pssm-ID: 442215 [Multi-domain] Cd Length: 207 Bit Score: 41.38 E-value: 1.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 157 LANIKREQGNIEEAVQLYRKALE--VFPEFAA-AHSNLASVLQQQGKLQEALMHYKEAirISPTFADAYSN-MGNTLKEM 232
Cdd:COG2976 96 LAKAAVDAGDLDKAAAQLQWVLDnaKDPALKAlARLRLARVLLAQKKYDEALATLDAV--KPEAFAALYAElRGDILLAQ 173
|
90
....*....|....*....
gi 1655265159 233 QDVQGALQCYTRAIQINPA 251
Cdd:COG2976 174 GDKAEARAAYQKALAALPE 192
|
|
| SNAP |
cd15832 |
Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family; Members of the ... |
166-279 |
1.31e-03 |
|
Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family; Members of the soluble NSF attachment protein (SNAP) family are involved in intracellular membrane trafficking, including vesicular transport between the endoplasmic reticulum and Golgi apparatus. Higher eukaryotes contain three isoforms of SNAPs: alpha, beta, and gamma. Alpha-SNAP is universally present in eukaryotes and acts as an adaptor protein between SNARE (integral membrane SNAP receptor) and NSF for recruitment to the 20S complex. Beta-SNAP is brain-specific and shares high sequence identity (about 85%) with alpha-SNAP. Gamma-SNAP is weakly related (about 20-25% identity) to the two other isoforms, and is ubiquitous. It may help regulate the activity of the 20S complex. The X-ray structures of vertebrate gamma-SNAP and yeast Sec17, a SNAP family member, show similar all-helical structures consisting of an N-terminal extended twisted sheet of four Tetratricopeptide repeat (TPR)-like helical hairpins and a C-terminal helical bundle.
Pssm-ID: 276937 [Multi-domain] Cd Length: 278 Bit Score: 41.80 E-value: 1.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 166 NIEEAVQLYRKAlevfpefaAAHSNLASVLQQQGK--LQEALMHYK-----EAirisptfADAYSNMGNTLKEMqDVQGA 238
Cdd:cd15832 27 KYEEAAELYEKA--------ANAFKLAKNWEEAGDafLKAAECQLKldskhDA-------ANAYVEAAKCYKKV-DPQEA 90
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 1655265159 239 LQCYTRAIQI-------NPAfADAHSNLASIH-KDSGNIPEAIASYRTA 279
Cdd:cd15832 91 VNCLEKAIEIytemgrfRQA-AKHLKEIAELYeNELGDLDKAIEAYEQA 138
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
54-114 |
1.38e-03 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 38.09 E-value: 1.38e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1655265159 54 NLGNVLKEARIFDRAVAGYLRAL---SLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP 114
Cdd:pfam13432 2 ALARAALRAGDYDDAAAALEAALarfPESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAP 65
|
|
| ApoLp-III_like |
cd13769 |
Apolipophorin-III and similar insect proteins; Exchangeable apolipoproteins play vital roles ... |
111-238 |
1.54e-03 |
|
Apolipophorin-III and similar insect proteins; Exchangeable apolipoproteins play vital roles in the transport of lipids and lipoprotein metabolism. Apolipophorin III (apoLp-III) assists in the loading of diacylglycerol, generated from triacylglycerol stores in the fat body through the action of adipokinetic hormone, into lipophorin, the hemolymph lipoprotein. ApoLp-III increases the lipid carrying capacity of lipophorin by covering the expanding hydrophobic surface resulting from diacylglycerol uptake. It plays a critical role in the transport of lipids during insect flight, and may also play a role in defense mechanisms and innate immunity.
Pssm-ID: 259842 [Multi-domain] Cd Length: 158 Bit Score: 40.00 E-value: 1.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 111 ELQPHFPDAYCNLANALKEKGNVSEAEEcyntALRLCPTHADSL-NNLAN--------IKREQGNIEEAVQLYRKAL-EV 180
Cdd:cd13769 5 ELIQKAQEAINNLAQQVQKQLGLQNPEE----VVNTLKEQSDNFaNNLQEvssslkeeAKKKQGEVEEAWNEFKTKLsET 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1655265159 181 FPEFAAAHSNLASVLQQQGKLQEAL-MHYKE----AIRISPTFADAYSNMGNTLKEMQD--VQGA 238
Cdd:cd13769 81 VPELRKSLPVEEKAQELQAKLQSGLqTLVTEsqklAKAISENSQKAQEELQKATKQAYDiaVEAA 145
|
|
| TPR_17 |
pfam13431 |
Tetratricopeptide repeat; |
3-35 |
1.80e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 433201 [Multi-domain] Cd Length: 34 Bit Score: 36.75 E-value: 1.80e-03
10 20 30
....*....|....*....|....*....|...
gi 1655265159 3 CYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAI 35
Cdd:pfam13431 1 LYLKALELDPNNADAYYNLAVLLLELGQSETAL 33
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
185-217 |
1.86e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 36.35 E-value: 1.86e-03
10 20 30
....*....|....*....|....*....|...
gi 1655265159 185 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 217
Cdd:pfam07719 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
22-61 |
2.00e-03 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 36.68 E-value: 2.00e-03
10 20 30 40
....*....|....*....|....*....|....*....|
gi 1655265159 22 GCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKE 61
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYK 40
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
231-298 |
2.21e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 38.82 E-value: 2.21e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1655265159 231 EMQDVQGALQCYTRAIQINPA---FADAHSNLASIHKDSGNIPEAIASYRTALKLKPD---FPDAYCNLAHCLQ 298
Cdd:COG1729 5 KAGDYDEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYL 78
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
96-160 |
2.64e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 37.18 E-value: 2.64e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1655265159 96 QGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGNVSEAEECYNTALRLCPTHADSLNNLANI 160
Cdd:pfam14559 1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLAKL 65
|
|
| ST7 |
cd11557 |
Suppression of tumorigenicity 7; ST7 is a metazoan protein that behaves as a tumor suppressor ... |
103-250 |
2.72e-03 |
|
Suppression of tumorigenicity 7; ST7 is a metazoan protein that behaves as a tumor suppressor in human cancer cells. It appears to localize to the cytoplasm and plasma membrane, and may mediate tumor suppression by regulating genes that are involved in oncogenic pathways and/or maintain cellular structure. It has been suggested that the suppression of tumorigenicity is associated with a function in mediating the remodeling of the extracellular matrix. However, somatic mutations of ST7 have not been observed as being commonly associated with molecular pathogenesis in various human neoplasias.
Pssm-ID: 211407 [Multi-domain] Cd Length: 458 Bit Score: 41.22 E-value: 2.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 103 IDTYRRAIELQPHFPDAYCNLANalKEKGNVSEAEECYNTALRLCPT---------HADS---------LNNLANIK--- 161
Cdd:cd11557 142 IKAAHEALELNPECATALILLAE--EEAQTILEAEKLLKQALKAAEAnyrksqqlqHQDPqheavhrrdTNVLVYIKrrl 219
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 162 ----REQGNIEEAVQLYRKALEVFPEFAAA--HSNLASVL---QQQGKLQEALMHYKEA-----IRISPTFA-------- 219
Cdd:cd11557 220 amcaRKLGRLKEAVKMMRDLMKEFPLLSVLniHENLIEALlelQAYADVQAVLAKYDDIslpksATICYTAAllkarava 299
|
170 180 190
....*....|....*....|....*....|....*.
gi 1655265159 220 -----DAYSNMGNTLKEMQdvqgALQCYTRAIQINP 250
Cdd:cd11557 300 dkfspEVASRRGLSTAEMN----AVEAIHRAVEFNP 331
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
27-131 |
2.81e-03 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 39.66 E-value: 2.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 27 AQGEIWLAIHHFEKAVTLDPNFLD-AYI--NLGNVLKEARIFDRAVAGYLRALSLSPNHAVVHGNLACVYYEQG------ 97
Cdd:PRK02603 47 ADGEYAEALENYEEALKLEEDPNDrSYIlyNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGekaeea 126
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1655265159 98 --------LIDLAIDTYRRAIELqphFPDAYCNLANALKEKG 131
Cdd:PRK02603 127 gdqdeaeaLFDKAAEYWKQAIRL---APNNYIEAQNWLKTTG 165
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
56-97 |
2.97e-03 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 36.30 E-value: 2.97e-03
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 1655265159 56 GNVLKEARIFDRAVAGYLRALSLSPNHAVVHGNLACVYYEQG 97
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
|
|
| TPR_7 |
pfam13176 |
Tetratricopeptide repeat; |
255-290 |
3.43e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 433012 [Multi-domain] Cd Length: 36 Bit Score: 35.98 E-value: 3.43e-03
10 20 30
....*....|....*....|....*....|....*.
gi 1655265159 255 AHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAY 290
Cdd:pfam13176 1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDRE 36
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
83-115 |
3.71e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 35.58 E-value: 3.71e-03
10 20 30
....*....|....*....|....*....|...
gi 1655265159 83 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH 115
Cdd:pfam07719 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
238-290 |
4.22e-03 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 40.54 E-value: 4.22e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 1655265159 238 ALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAY 290
Cdd:PLN03088 21 AVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAY 73
|
|
| TPR_MalT |
pfam17874 |
MalT-like TPR region; This entry contains a series of TPR repeats. |
164-247 |
4.74e-03 |
|
MalT-like TPR region; This entry contains a series of TPR repeats.
Pssm-ID: 436107 [Multi-domain] Cd Length: 336 Bit Score: 39.99 E-value: 4.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655265159 164 QGNIEEAVQLYRKAL-----EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRisptFADAYSNMGNT------LKEM 232
Cdd:pfam17874 14 KGDAERALELAEQALallpeDDLLARGLATFVLGEAYLCLGDLDAALQAMREAEA----LARRADSPHVTlwallqQGEI 89
|
90
....*....|....*....
gi 1655265159 233 QDVQG----ALQCYTRAIQ 247
Cdd:pfam17874 90 LRAQGrlhqALETYQQALQ 108
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
185-214 |
5.00e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 35.56 E-value: 5.00e-03
10 20 30
....*....|....*....|....*....|
gi 1655265159 185 AAAHSNLASVLQQQGKLQEALMHYKEAIRI 214
Cdd:pfam13374 2 ASSLNNLANALRAQGRYDEAEELLEEALAI 31
|
|
| TPR_8 |
pfam13181 |
Tetratricopeptide repeat; |
253-285 |
5.77e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 404131 [Multi-domain] Cd Length: 33 Bit Score: 35.07 E-value: 5.77e-03
10 20 30
....*....|....*....|....*....|...
gi 1655265159 253 ADAHSNLASIHKDSGNIPEAIASYRTALKLKPD 285
Cdd:pfam13181 1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
|
|
| TPR_17 |
pfam13431 |
Tetratricopeptide repeat; |
241-274 |
8.36e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 433201 [Multi-domain] Cd Length: 34 Bit Score: 34.83 E-value: 8.36e-03
10 20 30
....*....|....*....|....*....|....
gi 1655265159 241 CYTRAIQINPAFADAHSNLASIHKDSGNIPEAIA 274
Cdd:pfam13431 1 LYLKALELDPNNADAYYNLAVLLLELGQSETALQ 34
|
|
| |
