|
Name |
Accession |
Description |
Interval |
E-value |
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
156-392 |
1.06e-15 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 77.08 E-value: 1.06e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 156 NYERAKACFEKALEGDHENPEFSTGYAISAYRLDGFKLATKGYRQfsllplrqAVSLNPDNGYLKVLLALKLQDNGQEAE 235
Cdd:COG2956 23 QPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQK--------LLERDPDRAEALLELAQDYLKAGLLDR 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 236 GEKYLEEALANMSSQTYVFRYAAKFYRRKGSVDKALELLKKALQETPTSVLLHHQIGLCYKAQmiqikeatkgqprgqnr 315
Cdd:COG2956 95 AEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQ----------------- 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 316 ekidKMIRLAIFHFESAVENKPTFEVAHLDLARMYIEAGNHRKAEETFQKLLCMKP---VVEETMQDIHLQYARFQEFQK 392
Cdd:COG2956 158 ----GDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPdylPALPRLAELYEKLGDPEEALE 233
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
222-469 |
2.61e-15 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 75.92 E-value: 2.61e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 222 LLALKLQDNGQEAEGEKYLEEALANMSSQTYVFRYAAKFYRRKGSVDKALELLKKALQETPTSVLLHHQIGLCYKAQmiq 301
Cdd:COG2956 13 FKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKA--- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 302 ikeatkgqprgqnrEKIDKmirlAIFHFESAVENKPTFEVAHLDLARMYIEAGNHRKAEETFQKLLCMKPVVEEtmqdIH 381
Cdd:COG2956 90 --------------GLLDR----AEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAH----AY 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 382 LQYARfQEFQKKSEINAIIHYLKAIKIEQTS----------FIRDKSINSLKKLVLKKLQRNALDLESLSLLGFVYKLKG 451
Cdd:COG2956 148 CELAE-LYLEQGDYDEAIEALEKALKLDPDCarallllaelYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLG 226
|
250
....*....|....*...
gi 1622966419 452 NMNEALEYYERALRLAAD 469
Cdd:COG2956 227 DPEEALELLRKALELDPS 244
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
51-466 |
2.85e-14 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 75.51 E-value: 2.85e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 51 NVGIHNLLAYVKHLKGQNEEALKSLKEAEDLmQKEHANQASVRSLVTWSnfawvyyhMGRLAEAQAYLDKVenICKKPSN 130
Cdd:TIGR02917 192 NVDALLLKGDLLLSLGNIELALAAYRKAIAL-RPNNIAVLLALATILIE--------AGEFEEAEKHADAL--LKKAPNS 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 131 PFRYRMEcpeidceegwALLKCGGKNYERAKACFEKALEGDHENPEFSTGYAISAYRLDGFKLAtkgyRQFsllpLRQAV 210
Cdd:TIGR02917 261 PLAHYLK----------ALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQA----YQY----LNQIL 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 211 SLNPDNGYLKVLLALKLQDNGQEAEGEKYLEEALANMSSQTYVFRYAAKFYRRKGSVDKALELLKKALQETPTSVLLHHQ 290
Cdd:TIGR02917 323 KYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQ 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 291 IGLCYKAQmiqikeatkGQPRGqnrekidkmirlAIFHFESAVENKPTFEVAHLDLARMYIEAGNHRKAEETFQKLLCM- 369
Cdd:TIGR02917 403 LGISKLSQ---------GDPSE------------AIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKq 461
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 370 --KPVVEETMQDIHLqyarfqefQKKSEINAIIHYLKAIKIEQTSF----------IRDKSINSLKKLVLKKLQRNALDL 437
Cdd:TIGR02917 462 pdNASLHNLLGAIYL--------GKGDLAKAREAFEKALSIEPDFFpaaanlaridIQEGNPDDAIQRFEKVLTIDPKNL 533
|
410 420
....*....|....*....|....*....
gi 1622966419 438 ESLSLLGFVYKLKGNMNEALEYYERALRL 466
Cdd:TIGR02917 534 RAILALAGLYLRTGNEEEAVAWLEKAAEL 562
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
105-477 |
1.44e-12 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 70.11 E-value: 1.44e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 105 YYHMGRLAEAQAYLDKVENIckKPSNPFRYRMEcpeidceegwALLKCGGKNYERAKACFEKALEGDHENPEFSTGYAIS 184
Cdd:TIGR02917 373 YLALGDFEKAAEYLAKATEL--DPENAAARTQL----------GISKLSQGDPSEAIADLETAAQLDPELGRADLLLILS 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 185 AYRLDGFKLAtkgyrqfsLLPLRQAVSLNPDNGYLKVLLALKLQDNGQEAEGEKYLEEAL----ANMSSQTYVFRYAAKf 260
Cdd:TIGR02917 441 YLRSGQFDKA--------LAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALsiepDFFPAAANLARIDIQ- 511
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 261 yrrKGSVDKALELLKKALQETPTSVLLHHQIGLCYKAQ------MIQIKEATKGQPRGQNREKI-------DKMIRLAIF 327
Cdd:TIGR02917 512 ---EGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTgneeeaVAWLEKAAELNPQEIEPALAlaqyylgKGQLKKALA 588
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 328 HFESAVENKPTFEVAHLDLARMYIEAGNHRKAEETFQKLLCMKPVVEEtmqdIHLQYARFQEFQKKSEiNAIIHYLKAIK 407
Cdd:TIGR02917 589 ILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSAL----ALLLLADAYAVMKNYA-KAITSLKRALE 663
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 408 IE---------QTSF-IRDKSINSLKKLVLKKLQRNALDLESLSLLGFVYKLKGNMNEALEYYERALRLAADFENSVRQG 477
Cdd:TIGR02917 664 LKpdnteaqigLAQLlLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLH 743
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
210-469 |
1.64e-12 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 67.34 E-value: 1.64e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 210 VSLNPDNGYLKVLLALKLQDNGQEAEGEKYLEEALANMSSQTYVFRYAAKFYRRKGSVDKALELLKKALQETPTSVLLHH 289
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 290 QIGLCYKAQmiqikeatkgqprGQNREkidkmirlAIFHFESAVENKPTFEVAHLDLARMYIEAGNHRKAEETFQKLLCM 369
Cdd:COG0457 81 NLGLALQAL-------------GRYEE--------ALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALEL 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 370 KPVVEETMQDIHLQYARFQEFQKkseinAIIHYLKAIKIEQTSFIRDKSINSLKKLVLKKLQRNALDLESLSLLGFVYKL 449
Cdd:COG0457 140 DPDDADALYNLGIALEKLGRYEE-----ALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAIL 214
|
250 260
....*....|....*....|
gi 1622966419 450 KGNMNEALEYYERALRLAAD 469
Cdd:COG0457 215 TLAALAELLLLALALLLALR 234
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
51-287 |
2.10e-12 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 67.45 E-value: 2.10e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 51 NVGIHNLLAYVKHLKGQNEEALKSLKEAEDLMQKEHANQAsvrslvtwsNFAWVYYHMGRLAEAQAYLDKVENICKKPSN 130
Cdd:COG2956 41 TVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALL---------ELAQDYLKAGLLDRAEELLEKLLELDPDDAE 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 131 PFRYRMECPEIDceegwallkcggKNYERAKACFEKALEGDHENPEFSTGYAISAYRLDGFKLATKGYRQfsllplrqAV 210
Cdd:COG2956 112 ALRLLAEIYEQE------------GDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEK--------AL 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1622966419 211 SLNPDNGYLKVLLALKLQDNGQEAEGEKYLEEALANMSSQTYVFRYAAKFYRRKGSVDKALELLKKALQETPTSVLL 287
Cdd:COG2956 172 KLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLL 248
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
147-414 |
2.13e-12 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 69.25 E-value: 2.13e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 147 WALLKCGGKNYERAKACFEKALEGDHENPEFSTGYAISAYRLD-GFKLATKGYRQFSLLPLRQAVSLNPDNGYLKVLLAL 225
Cdd:COG3914 7 LALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAaLAEAAAAALLALAAGEAAAAAAALLLLAALLELAAL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 226 KLQDNGQEAEGEKYLEEALANMSSQTYVFRYAAKFYRRKGSVDKALELLKKALQETPTSVLLHHQIGLCYKAQMiQIKEA 305
Cdd:COG3914 87 LLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLG-RLEEA 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 306 TKgqprgqnrekidkmirlaifHFESAVENKPTFEVAHLDLARMYIEAGNHRKAEETFQKLLCMKPVVEETMQDIHLQYA 385
Cdd:COG3914 166 IA--------------------ALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALR 225
|
250 260
....*....|....*....|....*....
gi 1622966419 386 RFQEFQKKSEINAIIHYLKAIKIEQTSFI 414
Cdd:COG3914 226 QACDWEVYDRFEELLAALARGPSELSPFA 254
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
256-470 |
7.00e-12 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 65.91 E-value: 7.00e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 256 YAAKFYRRKGSVDKALELLKKALQETPTSVLLHHQIGLCYkaqmiqikeatkgqprgQNREKIDKMIRLaifhFESAVEN 335
Cdd:COG2956 13 FKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLY-----------------RRRGEYDRAIRI----HQKLLER 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 336 KPTFEVAHLDLARMYIEAGNHRKAEETFQKLLCMKPVVEEtmqdIHLQYARFQEFQKKSEiNAIIHYLKAIKIEQTSFir 415
Cdd:COG2956 72 DPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAE----ALRLLAEIYEQEGDWE-KAIEVLERLLKLGPENA-- 144
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1622966419 416 dksinslkklvlkklqrnaldlESLSLLGFVYKLKGNMNEALEYYERALRLAADF 470
Cdd:COG2956 145 ----------------------HAYCELAELYLEQGDYDEAIEALEKALKLDPDC 177
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
223-371 |
9.97e-11 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 59.44 E-value: 9.97e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 223 LALKLQDNGQEAEGEKYLEEALANMSSQTYVFRYAAKFYRRKGSVDKALELLKKALQETPTSVLLHHQIGLCYKAQmiqi 302
Cdd:COG4783 10 LAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKA---- 85
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1622966419 303 keatkgqprGQNREkidkmirlAIFHFESAVENKPTFEVAHLDLARMYIEAGNHRKAEETFQKLLCMKP 371
Cdd:COG4783 86 ---------GDYDE--------ALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDP 137
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
64-367 |
1.63e-10 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 61.67 E-value: 1.63e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 64 LKGQNEEALKSLKEaedlmqkehANQASVRSLVTWSNFAWVYYHMGRLAEAQAYLDKVEnickkpsnpfryrmecpEIDC 143
Cdd:COG2956 20 LNGQPDKAIDLLEE---------ALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLL-----------------ERDP 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 144 EEGWALLKCGG-----KNYERAKACFEKALEGDHENPEfstgyaisAYRLDGFKLATKGYRQFSLLPLRQAVSLNPDNGY 218
Cdd:COG2956 74 DRAEALLELAQdylkaGLLDRAEELLEKLLELDPDDAE--------ALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAH 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 219 LKVLLALKLQDNGQEAEGEKYLEEALANMSSQTYVFRYAAKFYRRKGSVDKALELLKKALQETPTSVLLHHQIGLCYKAQ 298
Cdd:COG2956 146 AYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKL 225
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1622966419 299 miqikeatkgqprGQNREkidkmirlAIFHFESAVENKPTfEVAHLDLARMYIEAGNHRKAEETFQKLL 367
Cdd:COG2956 226 -------------GDPEE--------ALELLRKALELDPS-DDLLLALADLLERKEGLEAALALLERQL 272
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
146-298 |
2.57e-10 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 60.79 E-value: 2.57e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 146 GWALLKCGgkNYERAKACFEKALEGDHENPEFSTGYAISAYRLDGFKLATKGYRQfsllplrqAVSLNPDNGYLKVLLAL 225
Cdd:COG0457 15 GLAYRRLG--RYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQ--------ALELDPDDAEALNNLGL 84
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1622966419 226 KLQDNGQEAEGEKYLEEALANMSSQTYVFRYAAKFYRRKGSVDKALELLKKALQETPTSVLLHHQIGLCYKAQ 298
Cdd:COG0457 85 ALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKL 157
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
140-291 |
3.31e-10 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 62.32 E-value: 3.31e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 140 EIDCEEGWALLKCGgkNYERAKACFEKALEGDHENPEfstgyaisAYRLDGFKLATKGYRQFSLLPLRQAVSLNPDNGYL 219
Cdd:COG3914 79 ALLELAALLLQALG--RYEEALALYRRALALNPDNAE--------ALFNLGNLLLALGRLEEALAALRRALALNPDFAEA 148
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1622966419 220 KVLLALKLQDNGQEAEGEKYLEEALANMSSQTYVFRYAAKFYRRKGSVDKALELLKKALQETPTSVLLHHQI 291
Cdd:COG3914 149 YLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNL 220
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
51-245 |
4.74e-10 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 60.02 E-value: 4.74e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 51 NVGIHNLLAYVKHLKGQNEEALKSLKEAEDLMQKEHanqasvrslVTWSNFAWVYYHMGRLAEAQAYLDKVENIckkpsN 130
Cdd:COG0457 7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDA---------EALYNLGLAYLRLGRYEEALADYEQALEL-----D 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 131 PfryrmECPEIDCEEGWALLKCGgkNYERAKACFEKALEGDHENPEFSTGYAISAYRLDGFKLAtkgyrqfsLLPLRQAV 210
Cdd:COG0457 73 P-----DDAEALNNLGLALQALG--RYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEA--------IEAYERAL 137
|
170 180 190
....*....|....*....|....*....|....*
gi 1622966419 211 SLNPDNGYLKVLLALKLQDNGQEAEGEKYLEEALA 245
Cdd:COG0457 138 ELDPDDADALYNLGIALEKLGRYEEALELLEKLEA 172
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
269-471 |
1.40e-09 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 60.39 E-value: 1.40e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 269 KALELLKKALQETPTSVLLHHQIGLCYKAQMIQIKEATKGQPRGQNREKIDKmIRLAIFHFESAVENKPTFEVAHLDLAR 348
Cdd:COG3914 42 GLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGR-YEEALALYRRALALNPDNAEALFNLGN 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 349 MYIEAGNHRKAEETFQKLLCMKPvveeTMQDIHLQYARFQEFQKKSEiNAIIHYLKAIKIeqtsfirdksinslkklvlk 428
Cdd:COG3914 121 LLLALGRLEEALAALRRALALNP----DFAEAYLNLGEALRRLGRLE-EAIAALRRALEL-------------------- 175
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1622966419 429 klqrNALDLESLSLLGFVYKLKGNMNEALEYYERALRLAADFE 471
Cdd:COG3914 176 ----DPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNA 214
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
261-476 |
2.43e-09 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 57.71 E-value: 2.43e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 261 YRRKGSVDKALELLKKALQETPTSVLLHHQIGLCYKAQmiqikeatkgqprGQNREkidkmirlAIFHFESAVENKPTFE 340
Cdd:COG0457 18 YRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRL-------------GRYEE--------ALADYEQALELDPDDA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 341 VAHLDLARMYIEAGNHRKAEETFQKLLCMKPVVEETMQDIHLQYARFQEFQKkseinAIIHYLKAIKIEQTsfirdksin 420
Cdd:COG0457 77 EALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDE-----AIEAYERALELDPD--------- 142
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1622966419 421 slkklvlkklqrnalDLESLSLLGFVYKLKGNMNEALEYYERALRLAADFENSVRQ 476
Cdd:COG0457 143 ---------------DADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAAL 183
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
63-470 |
3.18e-09 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 59.33 E-value: 3.18e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 63 HLK-GQNEEALKSLKEaedlMQKEHANQASvrslvTWSNFAWVYYHMGRLAEAQAYLDKVENIckKPSNPFRyRMECPEI 141
Cdd:TIGR02917 441 YLRsGQFDKALAAAKK----LEKKQPDNAS-----LHNLLGAIYLGKGDLAKAREAFEKALSI--EPDFFPA-AANLARI 508
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 142 DCEEGwallkcggkNYERAKACFEKALEGDHENPEFSTGYAisayrldGFKLATkGYRQFSLLPLRQAVSLNPDNGYLKV 221
Cdd:TIGR02917 509 DIQEG---------NPDDAIQRFEKVLTIDPKNLRAILALA-------GLYLRT-GNEEEAVAWLEKAAELNPQEIEPAL 571
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 222 LLALKLQDNGQEAEGEKYLEEALANMSSQTYVFRYAAKFYRRKGSVDKALELLKKALQETPTSVLLHhqiglcykaqmiq 301
Cdd:TIGR02917 572 ALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALAL------------- 638
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 302 iKEATKGQPRGQNREKidkmirlAIFHFESAVENKPTFEVAHLDLARMYIEAGNHRKAEETFQKLLCMKP---VVEETMQ 378
Cdd:TIGR02917 639 -LLLADAYAVMKNYAK-------AITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPkaaLGFELEG 710
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 379 DIHLQYARFQEfqkkseinAIIHYLKAIKIEQTSFI---------RDKSINSLKKLVLKKLQRNALDLESLSLLGFVYKL 449
Cdd:TIGR02917 711 DLYLRQKDYPA--------AIQAYRKALKRAPSSQNaiklhrallASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLA 782
|
410 420
....*....|....*....|.
gi 1622966419 450 KGNMNEALEYYERALRLAADF 470
Cdd:TIGR02917 783 QKDYDKAIKHYQTVVKKAPDN 803
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
206-298 |
5.16e-09 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 54.81 E-value: 5.16e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 206 LRQAVSLNPDNGYLKVLLALKLQDNGQEAEGEKYLEEALANMSSQTYVFRYAAKFYRRKGSVDKALELLKKALQETPTSV 285
Cdd:COG4783 27 LEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHP 106
|
90
....*....|...
gi 1622966419 286 LLHHQIGLCYKAQ 298
Cdd:COG4783 107 EAYLRLARAYRAL 119
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
51-280 |
1.15e-08 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 56.28 E-value: 1.15e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 51 NVGIHNLLAYVKHLKGQNEEALKSLKEaedLMQKEHANQASVRSLVTwsnfawVYYHMGRLAEAQAYLDKVENIckKPSN 130
Cdd:COG2956 75 RAEALLELAQDYLKAGLLDRAEELLEK---LLELDPDDAEALRLLAE------IYEQEGDWEKAIEVLERLLKL--GPEN 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 131 PFRYrmecpeidCEEGWALLKCGgkNYERAKACFEKALEGDHENPEFSTGYAISAYRLDGFKLATKGYRQfsllplrqAV 210
Cdd:COG2956 144 AHAY--------CELAELYLEQG--DYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALER--------AL 205
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 211 SLNPDNGYLKVLLALKLQDNGQEAEGEKYLEEALANMSSQTYVFRYaAKFYRRKGSVDKALELLKKALQE 280
Cdd:COG2956 206 EQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLAL-ADLLERKEGLEAALALLERQLRR 274
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
325-467 |
1.95e-08 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 52.70 E-value: 1.95e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 325 AIFHFESAVENKPTFEVAHLDLARMYIEAGNHRKAEETFQKLLCMKPvveeTMQDIHLQYARFQEFQKKSEiNAIIHYLK 404
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDP----DNADALLDLAEALLAAGDTE-EAEELLER 76
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1622966419 405 AIKIeqtsfirdksinslkklvlkklqrNALDLESLSLLGFVYKLKGNMNEALEYYERALRLA 467
Cdd:COG4235 77 ALAL------------------------DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
159-284 |
5.97e-08 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 51.55 E-value: 5.97e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 159 RAKACFEKALEGDHENPEFSTGYAISAYRLDGFKLATKGYRQfsllplrqAVSLNPDNGYLKVLLALKLQDNGQEAEGEK 238
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEK--------ALRLDPDNADALLDLAEALLAAGDTEEAEE 72
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1622966419 239 YLEEALANMSSQTYVFRYAAKFYRRKGSVDKALELLKKALQETPTS 284
Cdd:COG4235 73 LLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPAD 118
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
146-245 |
2.94e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 49.23 E-value: 2.94e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 146 GWALLKCGgkNYERAKACFEKALEGDHENPEFSTGYAISAYRLDGFKLATKgyrqfsllPLRQAVSLNPDNGYLKVLLAL 225
Cdd:COG4235 24 GRAYLRLG--RYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEE--------LLERALALDPDNPEALYLLGL 93
|
90 100
....*....|....*....|
gi 1622966419 226 KLQDNGQEAEGEKYLEEALA 245
Cdd:COG4235 94 AAFQQGDYAEAIAAWQKLLA 113
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
14-276 |
3.20e-07 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 52.69 E-value: 3.20e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 14 LEQLRCHFTWELFIEDDEMPDLENRVLDQIEFLDtkynvgihnLLAYVKHLKGQNEEALKSLkeaedlmqkEHANQASVR 93
Cdd:COG3914 49 AALAEAAAAALLALAAGEAAAAAAALLLLAALLE---------LAALLLQALGRYEEALALY---------RRALALNPD 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 94 SLVTWSNFAWVYYHMGRLAEAQAYLDKVENIckKPSNpfryrmecPEIDCEEGWALLKCGgkNYERAKACFEKALEGDHE 173
Cdd:COG3914 111 NAEALFNLGNLLLALGRLEEALAALRRALAL--NPDF--------AEAYLNLGEALRRLG--RLEEAIAALRRALELDPD 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 174 NPEfstgyaisAYRLDGFKLATKGYRQFSLLPLRQAVSLNPDNGYLKVLLALKLQDNGqEAEGEKYLEEALANMSSQTYV 253
Cdd:COG3914 179 NAE--------ALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQAC-DWEVYDRFEELLAALARGPSE 249
|
250 260
....*....|....*....|...
gi 1622966419 254 FRYAAKFYRRKGSVDKALELLKK 276
Cdd:COG3914 250 LSPFALLYLPDDDPAELLALARA 272
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
58-216 |
3.51e-07 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 49.42 E-value: 3.51e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 58 LAYVKHLKGQNEEALKSLKEAEDLmqkehanqaSVRSLVTWSNFAWVYYHMGRLAEAQAYLDKVenICKKPSNPfryrme 137
Cdd:COG4783 10 LAQALLLAGDYDEAEALLEKALEL---------DPDNPEAFALLGEILLQLGDLDEAIVLLHEA--LELDPDEP------ 72
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1622966419 138 cpEIDCEEGWALLKCGgkNYERAKACFEKALEGDHENPEFSTGYAISAYRLDGFKLATKGYrqfsllplRQAVSLNPDN 216
Cdd:COG4783 73 --EARLNLGLALLKAG--DYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAAL--------EKALELDPDD 139
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
198-372 |
4.06e-07 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 49.57 E-value: 4.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 198 YRQFSLLPLRQAVSLNPDNGYLKVLLALKLQDNGQEAEGEKYLEEALANMSSQTYVFRYAAKFYRRKGSVDKALELLKKA 277
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 278 LQETPTSVLLHHQIGLCYKAQmiqikeatkgqprGQNREkidkmirlAIFHFESAVENKPTFEVAHLDLARMYIEAGNHR 357
Cdd:COG5010 81 LQLDPNNPELYYNLALLYSRS-------------GDKDE--------AKEYYEKALALSPDNPNAYSNLAALLLSLGQDD 139
|
170
....*....|....*
gi 1622966419 358 KAEETFQKLLCMKPV 372
Cdd:COG5010 140 EAKAALQRALGTSPL 154
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
333-470 |
1.04e-06 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 50.01 E-value: 1.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 333 VENKPTFEVAHLDLARMYIEAGNHRKAEETFQKLLCMKPVVEETMQDIHLQYARFQEFQKkseinAIIHYLKAIKIeqts 412
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEE-----ALADYEQALEL---- 71
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 1622966419 413 firdksinslkklvlkklqrNALDLESLSLLGFVYKLKGNMNEALEYYERALRLAADF 470
Cdd:COG0457 72 --------------------DPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDD 109
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
155-246 |
1.69e-06 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 46.32 E-value: 1.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 155 KNYERAKACFEKALEGDHENPEFSTGYAISAYRLDGFKLAtkgyrqfslLPLRQAVSLNPDNGYLKVLLALKLQDNGQEA 234
Cdd:COG3063 6 GDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEA---------IALEKALKLDPNNAEALLNLAELLLELGDYD 76
|
90
....*....|..
gi 1622966419 235 EGEKYLEEALAN 246
Cdd:COG3063 77 EALAYLERALEL 88
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
54-127 |
2.43e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 45.07 E-value: 2.43e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1622966419 54 IHNLLAYVKHLKGQNEEALKSLKEAEDLMQKEHANQaSVRSLVTWSNFAWVYYHMGRLAEAQAYLDKVENICKK 127
Cdd:pfam13424 5 ALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPD-HPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
261-371 |
2.52e-06 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 45.55 E-value: 2.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 261 YRRKGSVDKALELLKKALQETPTSVLLHHQIGLCYKAQmiqikeatkgqprgqnrEKIDKMIRlaifhFESAVENKPTFE 340
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQ-----------------GRYDEAIA-----LEKALKLDPNNA 59
|
90 100 110
....*....|....*....|....*....|.
gi 1622966419 341 VAHLDLARMYIEAGNHRKAEETFQKLLCMKP 371
Cdd:COG3063 60 EALLNLAELLLELGDYDEALAYLERALELDP 90
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
206-298 |
3.21e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 46.54 E-value: 3.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 206 LRQAVSLNPDNGYLKVLLALKLQDNGQEAEGEKYLEEALANMSSQTYVFRYAAKFYRRKGSVDKALELLKKALQETPTSV 285
Cdd:COG4235 6 LRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNP 85
|
90
....*....|...
gi 1622966419 286 LLHHQIGLCYKAQ 298
Cdd:COG4235 86 EALYLLGLAAFQQ 98
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
248-409 |
4.75e-06 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 45.95 E-value: 4.75e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 248 SSQTYVFRYAAKFYRRKGSVDKALELLKKALQETPTSVLLHHQIGLCYKAQmiqikeatkgqprGQNREkidkmirlAIF 327
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQL-------------GDLDE--------AIV 59
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 328 HFESAVENKPTFEVAHLDLARMYIEAGNHRKAEETFQKLLCMKPvveeTMQDIHLQYARFQEFQKKSEiNAIIHYLKAIK 407
Cdd:COG4783 60 LLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDP----EHPEAYLRLARAYRALGRPD-EAIAALEKALE 134
|
..
gi 1622966419 408 IE 409
Cdd:COG4783 135 LD 136
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
155-246 |
1.90e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 44.95 E-value: 1.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 155 KNYERAKACFEKALEGDHENPEFSTGYAISAYRLDGFKLAtkgyrqfsLLPLRQAVSLNPDNGYLKVLLALKLQDNGQEA 234
Cdd:COG5010 68 GDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEA--------KEYYEKALALSPDNPNAYSNLAALLLSLGQDD 139
|
90
....*....|..
gi 1622966419 235 EGEKYLEEALAN 246
Cdd:COG5010 140 EAKAALQRALGT 151
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
206-282 |
1.96e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 43.24 E-value: 1.96e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1622966419 206 LRQAVSLNPDNGYLKVLLALKLQDNGQEAEGEKYlEEALANMSSQTYVFRYAAKFYRRKGSVDKALELLKKALQETP 282
Cdd:COG3063 15 YEKALELDPDNADALNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDP 90
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
140-306 |
4.07e-05 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 46.13 E-value: 4.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 140 EIDCEEGWALLKCG--------GKNYERAKACFEKALEGDHENPefstgYAISAYRLDGFKLATKGYRQFSLLPLRQAVS 211
Cdd:TIGR00990 285 ELDEETGNGQLQLGlkspeskaDESYEEAARAFEKALDLGKLGE-----KEAIALNLRGTFKCLKGKHLEALADLSKSIE 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 212 LNPDNGYLKVLLALKLQDNGQEAEGEKYLEEALANMSSQTYVFRYAAKFYRRKGSVDKALELLKKALQETPTSVLLHHQI 291
Cdd:TIGR00990 360 LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQL 439
|
170
....*....|....*.
gi 1622966419 292 G-LCYKAQMIQIKEAT 306
Cdd:TIGR00990 440 GvTQYKEGSIASSMAT 455
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
325-470 |
7.89e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 42.49 E-value: 7.89e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 325 AIFHFESAVENKPTFEVAHLDLARMYIEAGNHRKAEETFQKLLCMKPvvEETmqDIHLQYARFQEFQKKSEiNAIIHYLK 404
Cdd:COG4783 23 AEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDP--DEP--EARLNLGLALLKAGDYD-EALALLEK 97
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1622966419 405 AIKieqtsfirdksinslkklvlkklqRNALDLESLSLLGFVYKLKGNMNEALEYYERALRLAADF 470
Cdd:COG4783 98 ALK------------------------LDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
51-174 |
7.97e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 42.49 E-value: 7.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 51 NVGIHNLLAYVKHLKGQNEEALKSLKEAEDLMQKEHAnqasvrslvTWSNFAWVYYHMGRLAEAQAYLDKVENIckKPSN 130
Cdd:COG4783 37 NPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPE---------ARLNLGLALLKAGDYDEALALLEKALKL--DPEH 105
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 1622966419 131 PFRYRMecpeidceegWALLKCGGKNYERAKACFEKALEGDHEN 174
Cdd:COG4783 106 PEAYLR----------LARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
51-242 |
1.46e-04 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 43.46 E-value: 1.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 51 NVGIHNLLAYVKHLKGQNEEALKSLKEAEDLMQKEHAnqasvrslvTWSNFAWVYYHMGRLAEAQAYLDKVenICKKPSN 130
Cdd:COG0457 75 DAEALNNLGLALQALGRYEEALEDYDKALELDPDDAE---------ALYNLGLALLELGRYDEAIEAYERA--LELDPDD 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 131 PFRYRmecpeidcEEGWALLKCGgkNYERAKACFEKALEGDHENPEFSTGYAISAYRLDGFKLATKGYRQFSLLPLRQAV 210
Cdd:COG0457 144 ADALY--------NLGIALEKLG--RYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAI 213
|
170 180 190
....*....|....*....|....*....|..
gi 1622966419 211 SLNPDNGYLKVLLALKLQDNGQEAEGEKYLEE 242
Cdd:COG0457 214 LTLAALAELLLLALALLLALRLAALALYQYRA 245
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
57-245 |
1.52e-04 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 44.30 E-value: 1.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 57 LLAYVKHLKGQNEEALKSLKEAEDlMQKEHANQASVRSLVtwsnfAWVYYHMGRLAEA-QAYLDKVEnicKKPSNPfryr 135
Cdd:TIGR02917 738 NAIKLHRALLASGNTAEAVKTLEA-WLKTHPNDAVLRTAL-----AELYLAQKDYDKAiKHYQTVVK---KAPDNA---- 804
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 136 mecpEIDCEEGWALLKcgGKNyERAKACFEKALEGDHENPEFSTGYaisayrldGFKLATKGYRQFSLLPLRQAVSLNPD 215
Cdd:TIGR02917 805 ----VVLNNLAWLYLE--LKD-PRALEYAERALKLAPNIPAILDTL--------GWLLVEKGEADRALPLLRKAVNIAPE 869
|
170 180 190
....*....|....*....|....*....|
gi 1622966419 216 NGYLKVLLALKLQDNGQEAEGEKYLEEALA 245
Cdd:TIGR02917 870 AAAIRYHLALALLATGRKAEARKELDKLLN 899
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
98-216 |
2.64e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 40.76 E-value: 2.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 98 WSNFAWVYYHMGRLAEAQAYLDKVENIckKPSNPFRYRmecpeidceeGWALLKCGGKNYERAKACFEKALEGDHENPEF 177
Cdd:COG4235 20 WLLLGRAYLRLGRYDEALAAYEKALRL--DPDNADALL----------DLAEALLAAGDTEEAEELLERALALDPDNPEA 87
|
90 100 110
....*....|....*....|....*....|....*....
gi 1622966419 178 STGYAISAYRLDGFKLATKGYrqfsllplRQAVSLNPDN 216
Cdd:COG4235 88 LYLLGLAAFQQGDYAEAIAAW--------QKLLALLPAD 118
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
69-200 |
4.15e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 40.71 E-value: 4.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 69 EEALKSLKEAEDLMQKEHANQASVRSLVTWSNFAWVYYHMGRLAEAQAYLDKVENIckKPSNpfryrmecPEIDCEEGWA 148
Cdd:COG5010 28 EAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL--DPNN--------PELYYNLALL 97
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 1622966419 149 LLKCGgkNYERAKACFEKALEGDHENPEFSTGYAISAYRLDGFKLATKGYRQ 200
Cdd:COG5010 98 YSRSG--DKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQR 147
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
32-268 |
7.67e-04 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 42.38 E-value: 7.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 32 MPDLENRVLDQIEFLDTKY--NVGIHNLLAYVKHLKGQNEEALKSLKE-AEDLMQKEHANQ----------ASVRSLVTW 98
Cdd:PRK11447 159 LPAQRPEAINQLQRLNADYpgNTGLRNTLALLLFSSGRRDEGFAVLEQmAKSPAGRDAAAQlwygqikdmpVSDASVAAL 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 99 SNFAWVyYHMGRLAE-AQAYLDKVENICKKPSnpFRYRMecpeidceEGWALLKCGGKNyeRAKACFEKALEGDHENPEf 177
Cdd:PRK11447 239 QKYLQV-FSDGDSVAaARSQLAEQQKQLADPA--FRARA--------QGLAAVDSGQGG--KAIPELQQAVRANPKDSE- 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 178 stgyAISAYrldGFKLATKGYRQFSLLPLRQAVSLNPD-------NGYLKV---LLALKlqdngqeaEGEKYLEealANM 247
Cdd:PRK11447 305 ----ALGAL---GQAYSQQGDRARAVAQFEKALALDPHssnrdkwESLLKVnryWLLIQ--------QGDAALK---ANN 366
|
250 260
....*....|....*....|.
gi 1622966419 248 SSQtyvfryAAKFYRRKGSVD 268
Cdd:PRK11447 367 LAQ------AERLYQQARQVD 381
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
438-470 |
8.23e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 36.63 E-value: 8.23e-04
10 20 30
....*....|....*....|....*....|...
gi 1622966419 438 ESLSLLGFVYKLKGNMNEALEYYERALRLAADF 470
Cdd:pfam00515 2 KALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
153-470 |
1.08e-03 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 41.61 E-value: 1.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 153 GGKNYERAKACFEKALEGDHENPEFSTGYA--------------------------ISAYRLDGFKLATKGYRQFSLLPL 206
Cdd:TIGR02917 137 GLGQLELAQKSYEQALAIDPRSLYAKLGLAqlalaenrfdearalidevltadpgnVDALLLKGDLLLSLGNIELALAAY 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 207 RQAVSLNPDNGYLKVLLALKLQDNGQEAEGEKYLEEALANMSSQTYVFRYAAKFYRRKGSVDKALELLKKALQETP---T 283
Cdd:TIGR02917 217 RKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPeylP 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 284 SVLL----HHQIGLCYKAQMiQIKEATKGQPRGQNREKIDKMIRL-------AIFHFESAVENKPTfEVAHLDLARM-YI 351
Cdd:TIGR02917 297 ALLLagasEYQLGNLEQAYQ-YLNQILKYAPNSHQARRLLASIQLrlgrvdeAIATLSPALGLDPD-DPAALSLLGEaYL 374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 352 EAGNHRKAEETFQKLLCMKPvveeTMQDIHLQYARFQEFQKKSEiNAIIHYLKAIKIEQT----------SFIRDKSINS 421
Cdd:TIGR02917 375 ALGDFEKAAEYLAKATELDP----ENAAARTQLGISKLSQGDPS-EAIADLETAAQLDPElgradlllilSYLRSGQFDK 449
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 1622966419 422 LKKLVLKKLQRNALDLESLSLLGFVYKLKGNMNEALEYYERALRLAADF 470
Cdd:TIGR02917 450 ALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDF 498
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
438-470 |
1.40e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 36.27 E-value: 1.40e-03
10 20 30
....*....|....*....|....*....|...
gi 1622966419 438 ESLSLLGFVYKLKGNMNEALEYYERALRLAADF 470
Cdd:smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
54-367 |
1.75e-03 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 40.84 E-value: 1.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 54 IHNLLAYVKHLKGQNEEALKSLKEAedLMQKEHANQASVRslvtwsnFAWVYYHMGRLAEAQAYLDKVENicKKPSNPFR 133
Cdd:TIGR02917 637 ALLLLADAYAVMKNYAKAITSLKRA--LELKPDNTEAQIG-------LAQLLLAAKRTESAKKIAKSLQK--QHPKAALG 705
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 134 YRMEcpeidceeGWALLKcgGKNYERAKACFEKALEgdhenpefSTGYAISAYRLDGFKLATkGYRQFSLLPLRQAVSLN 213
Cdd:TIGR02917 706 FELE--------GDLYLR--QKDYPAAIQAYRKALK--------RAPSSQNAIKLHRALLAS-GNTAEAVKTLEAWLKTH 766
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 214 PDNGYLKVLLALKLQDNGQEAEGEKYLEEALANMSSQTYVFRYAAKFYRrKGSVDKALELLKKALQETPTSvllhHQIGL 293
Cdd:TIGR02917 767 PNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYL-ELKDPRALEYAERALKLAPNI----PAILD 841
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1622966419 294 CYKAQMIQIKEATKgqprgqnrekidkmirlAIFHFESAVENKPTFEVAHLDLARMYIEAGNHRKAEETFQKLL 367
Cdd:TIGR02917 842 TLGWLLVEKGEADR-----------------ALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
342-470 |
2.35e-03 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 38.25 E-value: 2.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 342 AHLDLARMYIEAGNHRKAEETFQKLLCMKPvveeTMQDIHLQYARFQEFQKKSEiNAIIHYLKAIKIEQTsfirdksins 421
Cdd:COG4783 6 ALYALAQALLLAGDYDEAEALLEKALELDP----DNPEAFALLGEILLQLGDLD-EAIVLLHEALELDPD---------- 70
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 1622966419 422 lkklvlkklqrnalDLESLSLLGFVYKLKGNMNEALEYYERALRLAADF 470
Cdd:COG4783 71 --------------EPEARLNLGLALLKAGDYDEALALLEKALKLDPEH 105
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
325-367 |
2.72e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 36.41 E-value: 2.72e-03
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 1622966419 325 AIFHFESAVENKPTFEVAHLDLARMYIEAGNHRKAEETFQKLL 367
Cdd:pfam14559 7 ALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALP 49
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
181-298 |
4.58e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 38.02 E-value: 4.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 181 YAISAYRLDGFKLATKGYRQFSLLPLRQAVSLNPDNGYLKVLLALKLQDNGQEAEGEKYLEEALANMSSQTYVFRYAAKF 260
Cdd:COG5010 18 TKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALL 97
|
90 100 110
....*....|....*....|....*....|....*...
gi 1622966419 261 YRRKGSVDKALELLKKALQETPTSVLLHHQIGLCYKAQ 298
Cdd:COG5010 98 YSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSL 135
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
206-465 |
4.88e-03 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 38.36 E-value: 4.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 206 LRQAVSLNPDNGYLKVLLALKLQDNGQEAEGEKYLEEALANM-SSQTYVFRYAAkfYRRKGSVDKALELLKKALQETPTS 284
Cdd:COG4785 29 LLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPdLAQLYYERGVA--YDSLGDYDLAIADFDQALELDPDL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 285 VLLHHQIGLCYKAQmiqikeatkgqprGQNREkidkmirlAIFHFESAVENKPTFEVAHLDLARMYIEAGNHRKAEETFQ 364
Cdd:COG4785 107 AEAYNNRGLAYLLL-------------GDYDA--------ALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLE 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 365 KllcmkpvveetmqdihlqyarFQEFQKKSEINAIIHYLKAIKIEQTSfirdksinslkklvlkklqrnALDLEsLSLLG 444
Cdd:COG4785 166 K---------------------ALELDPNDPERALWLYLAERKLDPEK---------------------ALALL-LEDWA 202
|
250 260
....*....|....*....|.
gi 1622966419 445 FVYKLKGNMNEALEYYERALR 465
Cdd:COG4785 203 TAYLLQGDTEEARELFKLALA 223
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
30-171 |
6.62e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 37.25 E-value: 6.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 30 DEMPDLENRVLDQIEFLDTKYNVGIHNLLAYVKHLKGQNEEALKSLKEAEDLMQKEHAnqasvrslvTWSNFAWVYYHMG 109
Cdd:COG5010 32 AGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPE---------LYYNLALLYSRSG 102
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1622966419 110 RLAEAQAYLDKVENIckKPSNpfryrmecPEIDCEEGWALLKCGgkNYERAKACFEKALEGD 171
Cdd:COG5010 103 DKDEAKEYYEKALAL--SPDN--------PNAYSNLAALLLSLG--QDDEAKAALQRALGTS 152
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
261-367 |
7.95e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 36.12 E-value: 7.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622966419 261 YRRKGSVDKALELLKKALQETPTSVLL---HHQIGLCYKAQmiqikeatkgqprGQNREkidkmirlAIFHFESAVENKP 337
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLKRYPNSPLApdaLYWLGEAYYAL-------------GDYDE--------AAEAFEKLLKRYP 61
|
90 100 110
....*....|....*....|....*....|...
gi 1622966419 338 TFEV---AHLDLARMYIEAGNHRKAEETFQKLL 367
Cdd:COG1729 62 DSPKapdALLKLGLSYLELGDYDKARATLEELI 94
|
|
| |
