|
Name |
Accession |
Description |
Interval |
E-value |
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
513-768 |
7.15e-33 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 127.82 E-value: 7.15e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 513 VHVNQRNAKLYNNVGHALENEGGYEEALLYFQEAVRIQTDDIGAHINVGRTLNNLKRYAEAEQAYVKAkalfpqakpgvs 592
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQA------------ 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 593 yhARIAPNHLNVFINLANLIAKnQTRLEEADHLYRQAISMRSDYVQAYINRGDILMKLNRTAQAQEVYEQALLYDSENAD 672
Cdd:COG0457 69 --LELDPDDAEALNNLGLALQA-LGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDAD 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 673 IYYNLGVVFLEQGKSQQAQVYFNKAIELYPEHEQALLNSAILLQELGGEEARKVSRSRLYKVLAKDDHNEKVYFNLGMLA 752
Cdd:COG0457 146 ALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLL 225
|
250
....*....|....*.
gi 1510352377 753 MDESSFEEAEQFFKRA 768
Cdd:COG0457 226 ALALLLALRLAALALY 241
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
536-806 |
2.12e-30 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 121.37 E-value: 2.12e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 536 YEEALLYFQEAVRIQTDDIGAHINVGRTLNNLKRYAEAEQAYVKAKALFPQakpgvsyhariapnHLNVFINLANLIAKN 615
Cdd:COG2956 24 PDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPD--------------RAEALLELAQDYLKA 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 616 QtRLEEADHLYRQAISMRSDYVQAYINRGDILMKLNRTAQAQEVYEQALLYDSENADIYYNLGVVFLEQGKSQQAQVYFN 695
Cdd:COG2956 90 G-LLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALE 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 696 KAIELYPEHEQALLNSAILLQELGG-EEARKVsrsrLYKVLAKDDHNEKVYFNLGMLAMDESSFEEAEQFFKRAIHLKSD 774
Cdd:COG2956 169 KALKLDPDCARALLLLAELYLEQGDyEEAIAA----LERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS 244
|
250 260 270
....*....|....*....|....*....|..
gi 1510352377 775 fRSALFNLALLLADTKRPLDAVPFLNQLIRHH 806
Cdd:COG2956 245 -DDLLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
610-869 |
8.14e-30 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 119.83 E-value: 8.14e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 610 NLIAKNQtrLEEADHLYRQAISMRSDYVQAYINRGDILMKLNRTAQAQEVYEQALLYDSENADIYYNLGVVFLEQGKSQQ 689
Cdd:COG2956 17 NYLLNGQ--PDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDR 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 690 AQVYFNKAIELYPEHEQALLNSAILLQELG-GEEARKVSRsrlyKVLAKDDHNEKVYFNLGMLAMDESSFEEAEQFFKRA 768
Cdd:COG2956 95 AEELLEKLLELDPDDAEALRLLAEIYEQEGdWEKAIEVLE----RLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKA 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 769 IHLKSDFRSALFNLALLLADTKRPLDAVPFLNQLIRHHASHVKGLILLGDIYInHMKDLDAAEKCYRSILHYEPQNTQGL 848
Cdd:COG2956 171 LKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYE-KLGDPEEALELLRKALELDPSDDLLL 249
|
250 260
....*....|....*....|.
gi 1510352377 849 hNLCVVFVERKRLAKAAACLQ 869
Cdd:COG2956 250 -ALADLLERKEGLEAALALLE 269
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
508-770 |
1.43e-28 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 115.98 E-value: 1.43e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 508 LFMSGVHVNQRNAKLYNNVGHALENEGGYEEALLYFQEAVRIQTDDIGAHINVGRTLNNLKRYAEAEQAYVKAkalfpqa 587
Cdd:COG2956 30 LLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKL------- 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 588 kpgvsyhARIAPNHLNVFINLANLIAKNQtRLEEADHLYRQAISMRSDYVQAYINRGDILMKLNRTAQAQEVYEQALLYD 667
Cdd:COG2956 103 -------LELDPDDAEALRLLAEIYEQEG-DWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLD 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 668 SENADIYYNLGVVFLEQGKSQQAQVYFNKAIELYPEHEQALLNSAILLQELG-GEEARKVsrsrLYKVLAKdDHNEKVYF 746
Cdd:COG2956 175 PDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGdPEEALEL----LRKALEL-DPSDDLLL 249
|
250 260
....*....|....*....|....
gi 1510352377 747 NLGMLAMDESSFEEAEQFFKRAIH 770
Cdd:COG2956 250 ALADLLERKEGLEAALALLERQLR 273
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
640-879 |
9.83e-28 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 113.67 E-value: 9.83e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 640 YINRGDILMKLNRTAQAQEVYEQALLYDSENADIYYNLGVVFLEQGKSQQAQVYFNKAIELYPEHEQALLNSAILLQELG 719
Cdd:COG2956 11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAG 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 720 -GEEARKVsrsrLYKVLAKDDHNEKVYFNLGMLAMDESSFEEAEQFFKRAIHLKSDFRSALFNLALLLADTKRPLDAVPF 798
Cdd:COG2956 91 lLDRAEEL----LEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEA 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 799 LNQLIRHHASHVKGLILLGDIYINHmKDLDAAEKCYRSILHYEPQNTQGLHNLCVVFVERKRLAKAAACLQYAQRLAPAE 878
Cdd:COG2956 167 LEKALKLDPDCARALLLLAELYLEQ-GDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSD 245
|
.
gi 1510352377 879 D 879
Cdd:COG2956 246 D 246
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
485-877 |
1.53e-26 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 117.11 E-value: 1.53e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 485 GVLLLSHALKTHQRNR------DWRTEYSlfmsgvhvnqRNAKLYNNVGHALENEGGYEEALLYFQEAVRIQTDDIGAhi 558
Cdd:TIGR02917 434 DLLLILSYLRSGQFDKalaaakKLEKKQP----------DNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPA-- 501
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 559 nvgrtLNNLKRYAEAEQAYVKAKALFpqakpgvSYHARIAPNHLNVFINLANLIAKnQTRLEEADHLYRQAISMRSDYVQ 638
Cdd:TIGR02917 502 -----AANLARIDIQEGNPDDAIQRF-------EKVLTIDPKNLRAILALAGLYLR-TGNEEEAVAWLEKAAELNPQEIE 568
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 639 AYINRGDILMKLNRTAQAQEVYEQALLYDSENADIYYNLGVVFLEQGKSQQAQVYFNKAIELYPEHEQALLNSA------ 712
Cdd:TIGR02917 569 PALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLAdayavm 648
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 713 ------------------------ILLQELGGEEARKVSRSRLYKVLAKDDHNEKVYFNL-GMLAMDESSFEEAEQFFKR 767
Cdd:TIGR02917 649 knyakaitslkralelkpdnteaqIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELeGDLYLRQKDYPAAIQAYRK 728
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 768 AIHLKSDFRSALFNLALLLAdTKRPLDAVPFLNQLIRHHASHVKGLILLGDIYINHmKDLDAAEKCYRSILHYEPQNTQG 847
Cdd:TIGR02917 729 ALKRAPSSQNAIKLHRALLA-SGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQ-KDYDKAIKHYQTVVKKAPDNAVV 806
|
410 420 430
....*....|....*....|....*....|...
gi 1510352377 848 LHNLCVVFVERKRlAKAaacLQYAQR---LAPA 877
Cdd:TIGR02917 807 LNNLAWLYLELKD-PRA---LEYAERalkLAPN 835
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
519-717 |
1.90e-24 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 109.70 E-value: 1.90e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 519 NAKLYNNVGHALENEGGYEEALLYFQEAVRIQTDDIGAHINVGRTLNNLKRYAEAEQAYvkAKALfpqakpgvsyhaRIA 598
Cdd:COG3914 77 LAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAAL--RRAL------------ALN 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 599 PNHLNVFINLANLIAKNQtRLEEADHLYRQAISMRSDYVQAYINRGDILMKLNRTAQAQEVYEQALLYDSENADIYYNLG 678
Cdd:COG3914 143 PDFAEAYLNLGEALRRLG-RLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLL 221
|
170 180 190
....*....|....*....|....*....|....*....
gi 1510352377 679 VVFLEQGKSQQAQvYFNKAIELYPEHEQALLNSAILLQE 717
Cdd:COG3914 222 FALRQACDWEVYD-RFEELLAALARGPSELSPFALLYLP 259
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
537-774 |
1.07e-23 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 107.00 E-value: 1.07e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 537 EEALLYFQEAVRIQTDDIGAHINVGRTLNNLKRYAEAEQAYVKAKALFPQAKPGVSYHARIAPNHLNvfinLANLIAKNQ 616
Cdd:COG3914 16 ALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLE----LAALLLQAL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 617 TRLEEADHLYRQAISMRSDYVQAYINRGDILMKLNRTAQAQEVYEQALLYDSENADIYYNLGVVFLEQGKSQQAQVYFNK 696
Cdd:COG3914 92 GRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRR 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1510352377 697 AIELYPEHEQALLNSAILLQELG-GEEARKVSRsrlyKVLAKDDHNEKVYFNLGMLAMDESSFEEAEQFFKRAIHLKSD 774
Cdd:COG3914 172 ALELDPDNAEALNNLGNALQDLGrLEEAIAAYR----RALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARG 246
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
519-909 |
9.78e-23 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 104.78 E-value: 9.78e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 519 NAKLYNNVGHALENEGGYEEALLYFQEAVRIQTDDIGAHINVGRTLNNLKRYAEAEQ---------------AYVKAKAL 583
Cdd:TIGR02917 192 NVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKhadallkkapnsplaHYLKALVD 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 584 FPQ-----AKPGVSYHARIAPNHLNVFInLANLIAKNQTRLEEADHLYRQAISMRSDYVQAYINRGDILMKLNRTAQAQE 658
Cdd:TIGR02917 272 FQKknyedARETLQDALKSAPEYLPALL-LAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIA 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 659 VYEQALLYDSENADIYYNLGVVFLEQGKSQQAQVYFNKAIELYPE-----------------HEQAL--------LNS-- 711
Cdd:TIGR02917 351 TLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPEnaaartqlgisklsqgdPSEAIadletaaqLDPel 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 712 -----AILLQELGGEEARKVsRSRLYKVLAKDDHNEKVYFNLGMLAMDESSFEEAEQFFKRAIHLKSDFRSALFNLALLL 786
Cdd:TIGR02917 431 gradlLLILSYLRSGQFDKA-LAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARID 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 787 ADTKRPLDAVPFLNQLIRHHASHVKGLILLGDIYINHMKDLDAA---EKCYRSilhyEPQNTQGLHNLCVVFVERKRLAK 863
Cdd:TIGR02917 510 IQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVawlEKAAEL----NPQEIEPALALAQYYLGKGQLKK 585
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 1510352377 864 AAACLQYAQRLAPAE----DYIGRhLQIVHSRLQKI----NKLPESAPERQLAY 909
Cdd:TIGR02917 586 ALAILNEAADAAPDSpeawLMLGR-AQLAAGDLNKAvssfKKLLALQPDSALAL 638
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
611-726 |
5.52e-20 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 87.17 E-value: 5.52e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 611 LIAKNQTRLEEADHLYRQAISMRSDYVQAYINRGDILMKLNRTAQAQEVYEQALLYDSENADIYYNLGVVFLEQGKSQQA 690
Cdd:COG4783 12 QALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEA 91
|
90 100 110
....*....|....*....|....*....|....*..
gi 1510352377 691 QVYFNKAIELYPEHEQALLNSAILLQELG-GEEARKV 726
Cdd:COG4783 92 LALLEKALKLDPEHPEAYLRLARAYRALGrPDEAIAA 128
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
674-898 |
1.08e-19 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 90.17 E-value: 1.08e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 674 YYNLGVVFLEQGKSQQAQVYFNKAIELYPEHEQALLNSAILLQELGG-EEARKVsrsrLYKVLAKDDHNEKVYFNLGMLA 752
Cdd:COG2956 11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEyDRAIRI----HQKLLERDPDRAEALLELAQDY 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 753 MDESSFEEAEQFFKRAIHLKSDFRSALFNLALLLADTKRPLDAVPFLNQLIRHHASHVKGLILLGDIYINHmKDLDAAEK 832
Cdd:COG2956 87 LKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQ-GDYDEAIE 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1510352377 833 CYRSILHYEPQNTQGLHNLCVVFVERKRLAKAAACLQYAQRLAPAEDYIGRHLQIVHSRLQKINKL 898
Cdd:COG2956 166 ALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEA 231
|
|
| TMTC_DUF1736 |
pfam08409 |
Protein O-mannosyl-transferase TMTC, DUF1736; This domain of unknown function is found in ... |
329-402 |
1.43e-19 |
|
Protein O-mannosyl-transferase TMTC, DUF1736; This domain of unknown function is found in O-mannosyl -transferases TMTC1-4, and constitutes a loop between TM7 and TM8 located in the ER lumen that contains a small hydrophobic, but not membrane-embedded helix. This loop is critical for catalysis and binding of ligands, especially the lipid-linked sugar moiety. TMTCs transfers mannosyl residues to the hydroxyl group of serine or threonine residues. The 4 members of the TMTC family are O-mannosyl-transferases acting primarily on the cadherin superfamily; each member has distinct roles in decorating the cadherin domains with O-linked mannose glycans at specific regions. These proteins also act as O-mannosyl-transferase on other proteins such as PDIA3.
Pssm-ID: 462468 Cd Length: 75 Bit Score: 83.73 E-value: 1.43e-19
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1510352377 329 GSQLPIFTRFDNPASAADTP-ERQLTYGYLIYLNCWLLLCPSLLCCDWTMGTVPLLEGFSDARNVTTLCTFLALG 402
Cdd:pfam08409 1 GGQLPVFSASDNPAAFSPSLlTRTLTYNYLPALNAWLLLFPSWLCFDWSMGSIPLIESLSDPRNLATLAFYGALA 75
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
551-704 |
1.98e-19 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 85.63 E-value: 1.98e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 551 TDDIGAHINVGRTLNNLKRYAEAEQAYVKAkalfpqakpgvsyhARIAPNHLNVFINLANlIAKNQTRLEEADHLYRQAI 630
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKA--------------LELDPDNPEAFALLGE-ILLQLGDLDEAIVLLHEAL 65
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1510352377 631 SMRSDYVQAYINRGDILMKLNRTAQAQEVYEQALLYDSENADIYYNLGVVFLEQGKSQQAQVYFNKAIELYPEH 704
Cdd:COG4783 66 ELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
637-775 |
2.52e-19 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 85.24 E-value: 2.52e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 637 VQAYINRGDILMKLNRTAQAQEVYEQALLYDSENADIYYNLGVVFLEQGKSQQAQVYFNKAIELYPEHEQALLNSAILLQ 716
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 717 ELGG-EEARKVSRsrlyKVLAKDDHNEKVYFNLGMLAMDESSFEEAEQFFKRAIHLKSDF 775
Cdd:COG4783 84 KAGDyDEALALLE----KALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
626-719 |
9.30e-19 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 83.13 E-value: 9.30e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 626 YRQAISMRSDYVQAYINRGDILMKLNRTAQAQEVYEQALLYDSENADIYYNLGVVFLEQGKSQQAQVYFNKAIELYPEHE 705
Cdd:COG4235 6 LRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNP 85
|
90
....*....|....
gi 1510352377 706 QALLNSAILLQELG 719
Cdd:COG4235 86 EALYLLGLAAFQQG 99
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
507-731 |
2.28e-18 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 86.32 E-value: 2.28e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 507 SLFMSGVHVNQRNAKLYNNVGHALENEGGYEEALLYFQEAVRIQTDDIGAHINVGRTLNNLKRYAEAEQAyvkakalfpq 586
Cdd:COG2956 97 ELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEA---------- 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 587 akpgvsyhariapnhlnvfinlanliaknqtrleeadhlYRQAISMRSDYVQAYINRGDILMKLNRTAQAQEVYEQALLY 666
Cdd:COG2956 167 ---------------------------------------LEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQ 207
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1510352377 667 DSENADIYYNLGVVFLEQGKSQQAQVYFNKAIELYPEHEQALLNSAILLQELGGEEARKVSRSRL 731
Cdd:COG2956 208 DPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGLEAALALLERQL 272
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
666-913 |
2.35e-18 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 85.44 E-value: 2.35e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 666 YDSENADIYYNLGVVFLEQGKSQQAQVYFNKAIELYPEHEQALLNSAILLQELGgeearkvsrsrlykvlakddhnekvy 745
Cdd:COG0457 3 LDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLG-------------------------- 56
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 746 fnlgmlamdesSFEEAEQFFKRAIHLKSDFRSALFNLALLLADTKRPLDAVPFLNQLIRHHASHVKGLILLGDIYINhMK 825
Cdd:COG0457 57 -----------RYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLE-LG 124
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 826 DLDAAEKCYRSILHYEPQNTQGLHNLCVVFVERKRLAKAAACLQYAQRLAPAEDYIGRHLQIVHSRLQKINKLPESAPER 905
Cdd:COG0457 125 RYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALE 204
|
....*...
gi 1510352377 906 QLAYEDYD 913
Cdd:COG0457 205 QALRKKLA 212
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
594-713 |
1.72e-17 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 79.66 E-value: 1.72e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 594 HARIAPNHLNVFINLANLIAKNQtRLEEADHLYRQAISMRSDYVQAYINRGDILMKLNRTAQAQEVYEQALLYDSENADI 673
Cdd:COG4235 9 ALAANPNDAEGWLLLGRAYLRLG-RYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEA 87
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 1510352377 674 YYNLGVVFLEQGKSQQAQVYFNKAIELYPE-HEQALLNSAI 713
Cdd:COG4235 88 LYLLGLAAFQQGDYAEAIAAWQKLLALLPAdAPARLLEASI 128
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
618-703 |
2.60e-16 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 74.82 E-value: 2.60e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 618 RLEEADHLYRQAISMRSDYVQAYINRGDILMKLNRTAQAQEvYEQALLYDSENADIYYNLGVVFLEQGKSQQAQVYFNKA 697
Cdd:COG3063 7 DLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERA 85
|
....*.
gi 1510352377 698 IELYPE 703
Cdd:COG3063 86 LELDPS 91
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
532-876 |
3.50e-16 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 83.59 E-value: 3.50e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 532 NEGGYEEALLYFQEAVRIQTDDIGAHINVGRTLNNLKRYAEAEQAYVKAKALFPQAKPGVSYHARIapnhlnvfinlANL 611
Cdd:TIGR02917 34 QKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARA-----------YLL 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 612 IAKNQTRLEEADHLYRQAismRSDYVQAYINRGDILMKLNRTAQAQEVYEQALLYDSENADIYYNLGVVFLEQGKSQQAQ 691
Cdd:TIGR02917 103 QGKFQQVLDELPGKTLLD---DEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEAR 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 692 VYFNKAIELYPEHEQALLNSAILLQELGG-EEARKVSRsrlyKVLAKDDHNEKVYFNLGMLAMDESSFEEAE-------Q 763
Cdd:TIGR02917 180 ALIDEVLTADPGNVDALLLKGDLLLSLGNiELALAAYR----KAIALRPNNIAVLLALATILIEAGEFEEAEkhadallK 255
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 764 FFKR---AIHLKS--DFRSalfnlallladtKRPLDAVPFLNQLIRHHASHVKGLILLGDIYInHMKDLDAAEKCYRSIL 838
Cdd:TIGR02917 256 KAPNsplAHYLKAlvDFQK------------KNYEDARETLQDALKSAPEYLPALLLAGASEY-QLGNLEQAYQYLNQIL 322
|
330 340 350
....*....|....*....|....*....|....*...
gi 1510352377 839 HYEPQNTQGLHNLCVVFVERKRLAKAAACLQYAQRLAP 876
Cdd:TIGR02917 323 KYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDP 360
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
567-702 |
5.08e-16 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 76.15 E-value: 5.08e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 567 LKRYAEAEQAYVKAKALFPQAKPGVSYHARIAPNHLNVFINLANLIAKNQTRLEEADHLYRQAISMRSDYVQAYINRGDI 646
Cdd:COG5010 18 TKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALL 97
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 1510352377 647 LMKLNRTAQAQEVYEQALLYDSENADIYYNLGVVFLEQGKSQQAQVYFNKAIELYP 702
Cdd:COG5010 98 YSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
576-769 |
6.03e-16 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 78.03 E-value: 6.03e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 576 AYVKAKALFPQAKPGVSYHARIAPNHLNVFINLANLIAKNQTRLEEADHLYRQAISMRS---------DYVQAYINRGDI 646
Cdd:COG4785 3 ALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAEridralalpDLAQLYYERGVA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 647 LMKLNRTAQAQEVYEQALLYDSENADIYYNLGVVFLEQGKSQQAQVYFNKAIELYPEHEQALLNSAILLQELG-GEEARK 725
Cdd:COG4785 83 YDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGrYELAIA 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 726 ------------VSRSRLYKVLAKDDHNEKVYFNL----GMLAMDESSFEEAEQFFKRAI 769
Cdd:COG4785 163 dlekaleldpndPERALWLYLAERKLDPEKALALLledwATAYLLQGDTEEARELFKLAL 222
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
655-771 |
8.63e-16 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 74.66 E-value: 8.63e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 655 QAQEVYEQALLYDSENADIYYNLGVVFLEQGKSQQAQVYFNKAIELYPEHEQALLNSAILLQELGG-EEARKVsrsrLYK 733
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDtEEAEEL----LER 76
|
90 100 110
....*....|....*....|....*....|....*...
gi 1510352377 734 VLAKDDHNEKVYFNLGMLAMDESSFEEAEQFFKRAIHL 771
Cdd:COG4235 77 ALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLAL 114
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
654-851 |
3.46e-14 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 76.57 E-value: 3.46e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 654 AQAQEVYEQALLYDSENADIYYNLGVVFLEQGKSQQAQ--VYFNKAIELYPEHEQALLNS-------AILLQELG-GEEA 723
Cdd:COG3914 18 LAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAaaALLALAAGEAAAAAAALLLLaallelaALLLQALGrYEEA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 724 RKVSRsrlyKVLAKDDHNEKVYFNLGMLAMDESSFEEAEQFFKRAIHLKSDFRSALFNLALLLADTKRPLDAVPFLNQLI 803
Cdd:COG3914 98 LALYR----RALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRAL 173
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1510352377 804 RHHASHVKGLILLGDIYInHMKDLDAAEKCYRSILHYEPQNTQGLHNL 851
Cdd:COG3914 174 ELDPDNAEALNNLGNALQ-DLGRLEEAIAAYRRALELDPDNADAHSNL 220
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
618-731 |
3.64e-14 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 71.14 E-value: 3.64e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 618 RLEEADHLYRQAISMRSDYVQAYINRGDILMKLNRTAQAQEVYEQALLYDSENADIYYNLGVVFLEQGKSQQAQVYFNKA 697
Cdd:COG5010 35 NNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKA 114
|
90 100 110
....*....|....*....|....*....|....*
gi 1510352377 698 IELYPEHEQALLNSAILLQELG-GEEARKVSRSRL 731
Cdd:COG5010 115 LALSPDNPNAYSNLAALLLSLGqDDEAKAALQRAL 149
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
552-774 |
3.46e-13 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 73.48 E-value: 3.46e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 552 DDIGAHINVGRTLNNL-KRYAE--AEQAYVKAKALFPQA--KPGVSYHARIAPNHLNVFINLANliaKNQTRLEEadhlY 626
Cdd:TIGR00990 282 DSNELDEETGNGQLQLgLKSPEskADESYEEAARAFEKAldLGKLGEKEAIALNLRGTFKCLKG---KHLEALAD----L 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 627 RQAISMRSDYVQAYINRGDILMKLNRTAQAQEVYEQALLYDSENADIYYNLGVVFLEQGKSQQAQVYFNKAIELYPEHEQ 706
Cdd:TIGR00990 355 SKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIF 434
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1510352377 707 ALLNSAILLQELGGEEARKVSRSRLYKvlaKDDHNEKVYFNLGMLAMDESSFEEAEQFFKRAIHLKSD 774
Cdd:TIGR00990 435 SHIQLGVTQYKEGSIASSMATFRRCKK---NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKE 499
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
646-726 |
5.17e-13 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 65.58 E-value: 5.17e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 646 ILMKLNRTAQAQEVYEQALLYDSENADIYYNLGVVFLEQGKSQQAQVyFNKAIELYPEHEQALLNSAILLQELG-GEEAR 724
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGdYDEAL 79
|
..
gi 1510352377 725 KV 726
Cdd:COG3063 80 AY 81
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
494-636 |
2.15e-12 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 65.21 E-value: 2.15e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 494 KTHQRNRDWRTEYSLFMSGVHVNQRNAKLYNNVGHALENEGGYEEALLYFQEAVRIQTDDIGAHINVGRTLNNLKRYAEA 573
Cdd:COG4783 12 QALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEA 91
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1510352377 574 EQAYVKAkalfpqakpgvsyhARIAPNHLNVFINLANLIAKNQtRLEEADHLYRQAISMRSDY 636
Cdd:COG4783 92 LALLEKA--------------LKLDPEHPEAYLRLARAYRALG-RPDEAIAALEKALELDPDD 139
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
668-809 |
3.65e-12 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 64.83 E-value: 3.65e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 668 SENADIYYNLGVVFLEQGKSQQAQVYFNKAIELYPEHEQALLNSAILLQELG-GEEARKVsrsrLYKVLAKDDHNEKVYF 746
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGdLDEAIVL----LHEALELDPDEPEARL 76
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1510352377 747 NLGMLAMDESSFEEAEQFFKRAIHLKSDFRSALFNLALLLADTKRPLDAVPFLNQLIRHHASH 809
Cdd:COG4783 77 NLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
515-586 |
2.50e-10 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 64.24 E-value: 2.50e-10
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1510352377 515 VNQRNAKLYNNVGHALENEGGYEEALLYFQEAVRIQTDDIGAHINVGRTLNNLKRYAEAEQAYVKAKALFPQ 586
Cdd:COG3914 141 LNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPD 212
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
618-771 |
5.15e-10 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 58.82 E-value: 5.15e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 618 RLEEADHLYRQAISMRSDYVQAYINRGDILMKLNRTAQAQEVYEQALLYDSENADIYYNLGVVFLEQGKSQQAQVYFNKA 697
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1510352377 698 IELYPEHEQALLNSAILLQELGG-EEARKVsrsrLYKVLAKDDHNEKVYFNLGMLAMDESSFEEAEQFFKRAIHL 771
Cdd:COG5010 81 LQLDPNNPELYYNLALLYSRSGDkDEAKEY----YEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGT 151
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
693-919 |
5.64e-10 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 63.09 E-value: 5.64e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 693 YFNKAIELYPEHEQALLNSAILLQELGGEEARKVSRSRLYKVLAKDDHNEKVYFNLGMLAMDESSFEEAEQFFKRAIHLk 772
Cdd:COG3914 2 AAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAAL- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 773 sdfrsaLFNLALLLADTKRPLDAVPFLNQLIRHHASHVKGLILLGDIYiNHMKDLDAAEKCYRSILHYEPQNTQGLHNLC 852
Cdd:COG3914 81 ------LELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLL-LALGRLEEALAALRRALALNPDFAEAYLNLG 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1510352377 853 VVFVERKRLAKAAACLQYAQRLAPAEDYIGRHLQIVhsrLQKINKLPESAPERQLAYEdYDPHEFKL 919
Cdd:COG3914 154 EALRRLGRLEEAIAALRRALELDPDNAEALNNLGNA---LQDLGRLEEAIAAYRRALE-LDPDNADA 216
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
520-667 |
1.63e-09 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 57.66 E-value: 1.63e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 520 AKLYNNVGHALENEGGYEEALLYFQEAVRIQTDDIGAHINVGRTLNNLKRYAEAEQAYVKAKALfpqakpgvsyhariAP 599
Cdd:COG5010 20 LRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL--------------DP 85
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1510352377 600 NHLNVFINLANLIAKNQtRLEEADHLYRQAISMRSDYVQAYINRGDILMKLNRTAQAQEVYEQALLYD 667
Cdd:COG5010 86 NNPELYYNLALLYSRSG-DKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
663-915 |
2.74e-09 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 61.25 E-value: 2.74e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 663 ALLYDSENADIYYNLGVVFLEQGKSQQAQVYFNKAIELYPEHEQALL----------------------------NSAIL 714
Cdd:TIGR02917 48 ALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPllarayllqgkfqqvldelpgktllddeGAAEL 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 715 LQELGGEEARK----VSRSRLYKVLAKDDHNEKVYFNLGMLAMDESSFEEAEQFFKRAIHLKSDFRSALFNLALLLADTK 790
Cdd:TIGR02917 128 LALRGLAYLGLgqleLAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLG 207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 791 RPLDAVPFLNQLIRHHASHVKGLILLGDIYInHMKDLDAAEKCYRSILHYEPQNTQGLHNLCVVFVERKRLAKAAACLQY 870
Cdd:TIGR02917 208 NIELALAAYRKAIALRPNNIAVLLALATILI-EAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQD 286
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 1510352377 871 AQRLAPaEDYIGRHLQ-IVHSRLQKInklpESAPERQLAYEDYDPH 915
Cdd:TIGR02917 287 ALKSAP-EYLPALLLAgASEYQLGNL----EQAYQYLNQILKYAPN 327
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
644-685 |
8.37e-09 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 52.09 E-value: 8.37e-09
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 1510352377 644 GDILMKLNRTAQAQEVYEQALLYDSENADIYYNLGVVFLEQG 685
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
744-878 |
1.04e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 54.81 E-value: 1.04e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 744 VYFNLGMLAMDESSFEEAEQFFKRAIHLKSDFRSALFNLALLLADTKRPLDAVPFLNQLIRHHASHVKGLILLGDIYINh 823
Cdd:COG4783 6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK- 84
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 1510352377 824 MKDLDAAEKCYRSILHYEPQNTQGLHNLCVVFVERKRLAKAAACLQYAQRLAPAE 878
Cdd:COG4783 85 AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
459-587 |
1.26e-08 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 54.97 E-value: 1.26e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 459 LLVAYGFEQLQRRWCLKWRIVGQVALGVLLLSHALKTHQRNRDWRTEYSLFMSGVHVNQRNAKLYNNVGHALENEGGYEE 538
Cdd:COG5010 27 YEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDE 106
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 1510352377 539 ALLYFQEAVRIQTDDIGAHINVGRTLNNLKRYAEAEQAYVKAKALFPQA 587
Cdd:COG5010 107 AKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSPLK 155
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
516-699 |
1.49e-08 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 56.08 E-value: 1.49e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 516 NQRNAKLYNNVGHALENEGGYEEALLYFQEAVRIQTDDIGAHINVGRTLNNLKRYAEAEQAyvkakalfpqakpgvsyha 595
Cdd:COG4785 69 LPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALED------------------- 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 596 riapnhlnvfinlanliaknqtrleeadhlYRQAISMRSDYVQAYINRGDILMKLNRTAQAQEVYEQALLYDSENADIYY 675
Cdd:COG4785 130 ------------------------------FDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERAL 179
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1510352377 676 NLGV--------------------VFLEQGKSQQAQVYFNKAIE 699
Cdd:COG4785 180 WLYLaerkldpekalallledwatAYLLQGDTEEARELFKLALA 223
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
645-737 |
3.35e-08 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 52.69 E-value: 3.35e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 645 DILMKLNRTAQAQEVYEQAL-LY--DSENADIYYNLGVVFLEQGKSQQAQVYFNKAIELYPEHE---QALLNSAILLQEL 718
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLkRYpnSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPkapDALLKLGLSYLEL 80
|
90 100
....*....|....*....|
gi 1510352377 719 G-GEEARKVsrsrLYKVLAK 737
Cdd:COG1729 81 GdYDKARAT----LEELIKK 96
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
506-737 |
4.13e-08 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 56.92 E-value: 4.13e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 506 YSLFMSGVHVNQRNAKLYNNVGHALENEGGYEEALLYFQEAVRIQTDDIGAHINVGRTLNNLKRYAEAEQAYVKAKALFP 585
Cdd:TIGR00990 385 EEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP 464
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 586 QAKPGVSYHARiapnhlnvfinlanlIAKNQTRLEEADHLYRQAISMRSDYVQAYINRGDILMK---LNRTAQ----AQE 658
Cdd:TIGR00990 465 EAPDVYNYYGE---------------LLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKalaLFQWKQdfieAEN 529
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 659 VYEQALLYDSENADIYYNLGVVFLEQGKSQQAQVYFNKAIELYPEHEQallnsaiLLQELGGEEARKVS---RSRlYKVL 735
Cdd:TIGR00990 530 LCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE-------LVQAISYAEATRTQiqvQED-YPVL 601
|
..
gi 1510352377 736 AK 737
Cdd:TIGR00990 602 AS 603
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
529-664 |
4.73e-08 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 51.32 E-value: 4.73e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 529 ALENEGGYEEALLYFQEAVRIQTDDIGAHINVGRTLNNLKRYAEAEQayvkakalfpqakpgvsyhariapnhlnvfinl 608
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA--------------------------------- 47
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 1510352377 609 anliaknqtrleeadhlYRQAISMRSDYVQAYINRGDILMKLNRTAQAQEVYEQAL 664
Cdd:COG3063 48 -----------------LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERAL 86
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
536-774 |
5.48e-08 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 57.02 E-value: 5.48e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 536 YEEALLYFQEAVRIQTDDIGAHINVGRTLNNLKRYAEAEQAYVKAKALFPQAKPGVSYHARIApnhlnvfinLAnliakn 615
Cdd:TIGR02917 651 YAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLY---------LR------ 715
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 616 QTRLEEADHLYRQAISmRSDYVQAYINRGDILMKLNRTAQAQEVYEQALLYDSENADIYYNLGVVFLEQGKSQQAQVYFN 695
Cdd:TIGR02917 716 QKDYPAAIQAYRKALK-RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQ 794
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1510352377 696 KAIELYPEHEQALLNSAILLQELGGEEARKVSRsRLYKvLAKDDHNekVYFNLGMLAMDESSFEEAEQFFKRAIHLKSD 774
Cdd:TIGR02917 795 TVVKKAPDNAVVLNNLAWLYLELKDPRALEYAE-RALK-LAPNIPA--ILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
618-707 |
6.00e-08 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 51.92 E-value: 6.00e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 618 RLEEADHLYRQAISM--RSDYV-QAYINRGDILMKLNRTAQAQEVYEQALLYDSEN---ADIYYNLGVVFLEQGKSQQAQ 691
Cdd:COG1729 8 DYDEAIAAFKAFLKRypNSPLApDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSpkaPDALLKLGLSYLELGDYDKAR 87
|
90
....*....|....*.
gi 1510352377 692 VYFNKAIELYPEHEQA 707
Cdd:COG1729 88 ATLEELIKKYPDSEAA 103
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
790-894 |
1.20e-07 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 51.73 E-value: 1.20e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 790 KRPLDAVPFLNQLIRHHASHVKGLILLGDIYInHMKDLDAAEKCYRSILHYEPQNTQGLHNLCVVFVERKRLAKAAACLQ 869
Cdd:COG4783 18 GDYDEAEALLEKALELDPDNPEAFALLGEILL-QLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLE 96
|
90 100
....*....|....*....|....*
gi 1510352377 870 YAQRLAPAEDYIGRHLQIVHSRLQK 894
Cdd:COG4783 97 KALKLDPEHPEAYLRLARAYRALGR 121
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
639-703 |
1.26e-07 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 49.69 E-value: 1.26e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1510352377 639 AYINRGDILMKLNRTAQAQEVYEQAL-----LYDSEN---ADIYYNLGVVFLEQGKSQQAQVYFNKAIELYPE 703
Cdd:pfam13424 5 ALNNLAAVLRRLGRYDEALELLEKALeiarrLLGPDHpltATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
516-643 |
1.38e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 51.16 E-value: 1.38e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 516 NQRNAKLYNNVGHALENEGGYEEALLYFQEAVRIQTDDIGAHINVGRTLNNLKRYAEAEQAYvkAKALfpqakpgvsyha 595
Cdd:COG4235 13 NPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELL--ERAL------------ 78
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1510352377 596 RIAPNHLNVFINLAnLIAKNQTRLEEADHLYRQAISMRSD-----YVQAYINR 643
Cdd:COG4235 79 ALDPDNPEALYLLG-LAAFQQGDYAEAIAAWQKLLALLPAdaparLLEASIAE 130
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
730-879 |
2.01e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 50.77 E-value: 2.01e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 730 RLYKVLAKDDHNEKVYFNLGMLAMDESSFEEAEQFFKRAIHLKSDfrsalfnlallladtkrpldavpflnqlirhhasH 809
Cdd:COG4235 5 RLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPD----------------------------------N 50
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 810 VKGLILLGDIYInHMKDLDAAEKCYRSILHYEPQNTQGLHNLCVVFVERKRLAKAAACLQYAQRLAPAED 879
Cdd:COG4235 51 ADALLDLAEALL-AAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADA 119
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
605-771 |
4.15e-07 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 50.83 E-value: 4.15e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 605 FINLANLIAK----NQtRLEEADHLYRQAISMRSDyvqayinrGDIlmklnrtAQAQEVYEQALLYDSENAD---IYYNL 677
Cdd:PRK02603 15 FTVMADLILKilpiNK-KAKEAFVYYRDGMSAQAD--------GEY-------AEALENYEEALKLEEDPNDrsyILYNM 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 678 GVVFLEQGKSQQAQVYFNKAIELYPEHEQALLNSAILLQELGgeeaRKvsrsrlykvlAKDDHNEkvyfnlgmlamDESS 757
Cdd:PRK02603 79 GIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRG----EK----------AEEAGDQ-----------DEAE 133
|
170
....*....|....*.
gi 1510352377 758 --FEEAEQFFKRAIHL 771
Cdd:PRK02603 134 alFDKAAEYWKQAIRL 149
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
496-587 |
5.26e-07 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 48.63 E-value: 5.26e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 496 HQRNRDWRTEYSLFMSGVHVNQRNAKLYNNVGHALENEGGYEEALLyFQEAVRIQTDDIGAHINVGRTLNNLKRYAEAEQ 575
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|..
gi 1510352377 576 AYVKAKALFPQA 587
Cdd:COG3063 81 YLERALELDPSA 92
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
520-586 |
6.44e-07 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 47.77 E-value: 6.44e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1510352377 520 AKLYNNVGHALENEGGYEEALLYFQEAVRIQTDDIGA-HINVGRTLNNL-------KRYAEAEQAYVKAKALFPQ 586
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPdHPLTATTLLNLgrlylelGRYEEALELLERALALAEK 77
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
671-704 |
7.62e-07 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 46.26 E-value: 7.62e-07
10 20 30
....*....|....*....|....*....|....
gi 1510352377 671 ADIYYNLGVVFLEQGKSQQAQVYFNKAIELYPEH 704
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
527-695 |
5.48e-06 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 50.47 E-value: 5.48e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 527 GHALENEGGYEEALLYFQEAVRIQTDDIGAHINVGRTLNNLKRYAEAEQAYVKAKALFPQAKPGVSYHARIAPNHLNVFI 606
Cdd:PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 607 NLAN--LIAKNqtrLEEADHLYRQAISMRSDYVQAYINRGDILMKLNRTAQAQEVYEQALLYDSENADIYYnlGVVFLEQ 684
Cdd:PRK11447 356 QQGDaaLKANN---LAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVR--GLANLYR 430
|
170
....*....|..
gi 1510352377 685 GKS-QQAQVYFN 695
Cdd:PRK11447 431 QQSpEKALAFIA 442
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
671-704 |
7.21e-06 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 43.59 E-value: 7.21e-06
10 20 30
....*....|....*....|....*....|....
gi 1510352377 671 ADIYYNLGVVFLEQGKSQQAQVYFNKAIELYPEH 704
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
638-723 |
1.03e-05 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 48.39 E-value: 1.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 638 QAYINRGDILMKLNRTAQAQEVYEQALLYDSENADIYYNLGVVFLEQGKSQQAQVYFNKAIELYPEHE-QALLNsaiLLQ 716
Cdd:cd24142 1 DELLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGyEKYLY---LGQ 77
|
....*..
gi 1510352377 717 ELGGEEA 723
Cdd:cd24142 78 LSGGEEA 84
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
642-705 |
1.89e-05 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 43.48 E-value: 1.89e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1510352377 642 NRGDILMKLNRTAQAQEVYEQALLYDS---ENADIYYNLGVVFLEQGKSQQAQVYFNKAIELYPEHE 705
Cdd:pfam13432 2 ALARAALRAGDYDDAAAALEAALARFPespDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
536-768 |
2.63e-05 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 47.24 E-value: 2.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 536 YEEALLYFQEAVRIQTDDIGAhinvgrtlnnLKRYAEAeqaYV------KAKALFPQAkpgvsyhARIAPNHLNV-FINL 608
Cdd:cd24142 16 FELALKFLQRALELEPNNVEA----------LELLGEI---LLelgdveEAREVLLRA-------IELDPDGGYEkYLYL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 609 ANLIAKnqtrlEEADHLYRQAISM----------------------RSDYVQAYINRGDILMklnrT---------AQAQ 657
Cdd:cd24142 76 GQLSGG-----EEALQYYEKGIEIleeelqalqaasaeaeeeaeelKRKLSSALCALAEIYM----TdlcdepdaeQRCE 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 658 EVYEQALLYDSENADIYYNLGVVFLEQGKSQQAQVYFNKAIEL----YPEHE----------------QALLNSAILLQE 717
Cdd:cd24142 147 ELITKALELDPTNPEALQTLASLRISQQRPDEAKEALRRSLELwkdlKEEDEeeaeedeaeeedvpsyEFRISLAKLLIE 226
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 1510352377 718 LGG-EEARKVSRSrlykVLAKDDHNEKVYFNLGMLA--MDESSFEEAEQFFKRA 768
Cdd:cd24142 227 LEMyEEALEVLEQ----LLDEDDEDVEVWYLLGWAYylLGEKEQEEAAELLRDA 276
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
608-775 |
2.92e-05 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 46.45 E-value: 2.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 608 LANLIAKNQTRLEEADHLYRQAISMRSDYVQAYINRGDI----LMKLNRTAQAQEVYEQALLYDSENADIYYNLGVVFLE 683
Cdd:COG4785 6 LALLLALALAAAAASKAAILLAALLFAAVLALAIALADLalalAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDS 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 684 QGKSQQAQVYFNKAIELYPEHEQAllnsaillqelggeearkvsrsrlykvlakddhnekvYFNLGMLAMDESSFEEAEQ 763
Cdd:COG4785 86 LGDYDLAIADFDQALELDPDLAEA-------------------------------------YNNRGLAYLLLGDYDAALE 128
|
170
....*....|..
gi 1510352377 764 FFKRAIHLKSDF 775
Cdd:COG4785 129 DFDRALELDPDY 140
|
|
| gliding_GltE |
NF033758 |
adventurous gliding motility TPR repeat lipoprotein GltE; GltE (also called AglT) is a ... |
660-912 |
3.75e-05 |
|
adventurous gliding motility TPR repeat lipoprotein GltE; GltE (also called AglT) is a tetratricopeptide repeat protein with a lipoprotein signal peptide and a role in A-motility (adventurous gliding motility) in Myxococcus xanthus and other delta-proteobacteria.
Pssm-ID: 468174 [Multi-domain] Cd Length: 411 Bit Score: 47.12 E-value: 3.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 660 YEQALLYDSENADIYYNLGVVFLEQGKSQQAQVYFNKAIELYPEHEQALLNSAILLQElGGEEARKV------------- 726
Cdd:NF033758 75 FKAALEADPNLAEAEYNLGVLAERQGKTDEAVARYKAALKKKPTLRQASENLAVMAQN-AGDVAGAValyqdvlkrypdd 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 727 --SRSRL------------------------------YKV------------LAK---------DDHNEKVYFNLGMLAM 753
Cdd:NF033758 154 asSRARLaeiyrqtgdhdkamelsraalmrdpqsttaLKVmmrsyldrkqlaMAKlvalravkiDQNDPELHHTVGLILL 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 754 DESSFEEAEQFFKRAIHLKSDFrsalfnlallladtkrpldaVPflnqlirhhaSHVkgliLLGDIYINhMKDLDAAEKC 833
Cdd:NF033758 234 QEGDKDGARLQFKRALEVRADY--------------------VP----------SHV----ELAQLALD-AEDYPGAEEH 278
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 834 YRSILHYEPQNTQGLHNLCVVFVERKRLAKAAACLQYAQRLAP--AEDYIGRHLqIVHSrlqkiNKlpeSAPERQLA-YE 910
Cdd:NF033758 279 LRRILQADGKNAAAHLNLGVAYKGQGQYDKAMQEYDEAEKLDPelAAIYLNRAI-ILHR-----VK---DAPERAVElYK 349
|
..
gi 1510352377 911 DY 912
Cdd:NF033758 350 KY 351
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
824-897 |
5.14e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 44.57 E-value: 5.14e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1510352377 824 MKDLDAAEKCYRSILHYEPQNTQGLHNLCVVFVERKRLAKAAACLQYAQRLAPAEDYIGRHLQIVHSRLQKINK 897
Cdd:COG5010 67 LGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDE 140
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
795-915 |
8.63e-05 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 45.49 E-value: 8.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 795 AVPFLNQLIRHHASHVKGLILLGDIYINhMKDLDAAEKCYRSILHYEPQNTQGLHNLCVVFVERKRLAKAAACLQYAQRL 874
Cdd:COG2956 27 AIDLLEEALELDPETVEAHLALGNLYRR-RGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLEL 105
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 1510352377 875 APAEDYIGRHLQIVHSRLQKINKLPESApERQLAYEDYDPH 915
Cdd:COG2956 106 DPDDAEALRLLAEIYEQEGDWEKAIEVL-ERLLKLGPENAH 145
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
790-877 |
9.00e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 42.08 E-value: 9.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 790 KRPLDAVPFLNQLIRHHASHVKGLILLGDIYINhMKDLDAAEKcYRSILHYEPQNTQGLHNLCVVFVERKRLAKAAACLQ 869
Cdd:COG3063 6 GDLEEAEEYYEKALELDPDNADALNNLGLLLLE-QGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLE 83
|
....*...
gi 1510352377 870 YAQRLAPA 877
Cdd:COG3063 84 RALELDPS 91
|
|
| PRK11788 |
PRK11788 |
tetratricopeptide repeat protein; Provisional |
613-733 |
9.29e-05 |
|
tetratricopeptide repeat protein; Provisional
Pssm-ID: 236983 [Multi-domain] Cd Length: 389 Bit Score: 45.96 E-value: 9.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 613 AKNQTRLEEADHLYRQAISMRSDYVQAYINRGDILMKLNRTAQA----QEVYEQALLYDSENADIYYNlgvVFLEQGKSQ 688
Cdd:PRK11788 190 ALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAiealERVEEQDPEYLSEVLPKLME---CYQALGDEA 266
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 1510352377 689 QAQVYFNKAIELYPEHEQALLNSAILLQELGGEEARKVSRSRLYK 733
Cdd:PRK11788 267 EGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRR 311
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
651-707 |
1.03e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 41.03 E-value: 1.03e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 1510352377 651 NRTAQAQEVYEQALLYDSENADIYYNLGVVFLEQGKSQQAQVYFNKAIELYPEHEQA 707
Cdd:pfam14559 2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRY 58
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
529-690 |
1.34e-04 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 45.84 E-value: 1.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 529 ALEnEGGYEEALLYFQEAVRIQTDDIGAHINVGRTLNNLKRYAEAEQAYVKAKALFPQAKPGVSYHARI----APNHLNV 604
Cdd:PRK11447 361 ALK-ANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLyrqqSPEKALA 439
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 605 FINlaNLIAKNQTRLEEadhLYRqaiSMRSDYVQAyinRGDILMKLNRTAQAQEVYEQALLYDSENADIYYNLGVVFLEQ 684
Cdd:PRK11447 440 FIA--SLSASQRRSIDD---IER---SLQNDRLAQ---QAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQA 508
|
....*.
gi 1510352377 685 GKSQQA 690
Cdd:PRK11447 509 GQRSQA 514
|
|
| TPR_8 |
pfam13181 |
Tetratricopeptide repeat; |
671-703 |
1.80e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 404131 [Multi-domain] Cd Length: 33 Bit Score: 39.30 E-value: 1.80e-04
10 20 30
....*....|....*....|....*....|...
gi 1510352377 671 ADIYYNLGVVFLEQGKSQQAQVYFNKAIELYPE 703
Cdd:pfam13181 1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
|
|
| TPR_17 |
pfam13431 |
Tetratricopeptide repeat; |
660-691 |
2.01e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 433201 [Multi-domain] Cd Length: 34 Bit Score: 39.45 E-value: 2.01e-04
10 20 30
....*....|....*....|....*....|..
gi 1510352377 660 YEQALLYDSENADIYYNLGVVFLEQGKSQQAQ 691
Cdd:pfam13431 2 YLKALELDPNNADAYYNLAVLLLELGQSETAL 33
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
766-876 |
2.02e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 42.64 E-value: 2.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 766 KRAIHLKSDFRSALFNLALLLADTKRPLDAVPFLNQLIRHHASHVKGLILLGDIYInHMKDLDAAEKCYRSILHYEPQNT 845
Cdd:COG5010 44 AAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYS-RSGDKDEAKEYYEKALALSPDNP 122
|
90 100 110
....*....|....*....|....*....|.
gi 1510352377 846 QGLHNLCVVFVERKRLAKAAACLQYAQRLAP 876
Cdd:COG5010 123 NAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
632-770 |
2.65e-04 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 43.72 E-value: 2.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 632 MRSDYVQAYINRGDILMKLNRTAQAQEVYEQAL--LYdSENADIYYNLGVVFLEQGKSQQAQVYFNKAIELYPEH--EQA 707
Cdd:COG4700 84 EFADTVQNRVRLADALLELGRYDEAIELYEEALtgIF-ADDPHILLGLAQALFELGRYAEALETLEKLIAKNPDFksSDA 162
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1510352377 708 LLNSAILLQELGG-EEARKVsrsrlYKVLAKDDHNEKVYFNLGMLAMDESSFEEAEQFFKRAIH 770
Cdd:COG4700 163 HLLYARALEALGDlEAAEAE-----LEALARRYSGPEARYRYAKFLARQGRTAEAKELLEEILD 221
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
671-703 |
3.15e-04 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 38.66 E-value: 3.15e-04
10 20 30
....*....|....*....|....*....|...
gi 1510352377 671 ADIYYNLGVVFLEQGKSQQAQVYFNKAIELYPE 703
Cdd:pfam07719 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| ycf3 |
CHL00033 |
photosystem I assembly protein Ycf3 |
654-771 |
4.36e-04 |
|
photosystem I assembly protein Ycf3
Pssm-ID: 176974 [Multi-domain] Cd Length: 168 Bit Score: 41.92 E-value: 4.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 654 AQAQEVYEQALLYDSENAD---IYYNLGVVFLEQGKSQQAQVYFNKAIELYPEHEQALLNSAILLQELGGEEARKvsrsr 730
Cdd:CHL00033 52 AEALQNYYEAMRLEIDPYDrsyILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQ----- 126
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 1510352377 731 lykvlakddhnekvyfnlGMLAMDESSFEEAEQFFKRAIHL 771
Cdd:CHL00033 127 ------------------GDSEIAEAWFDQAAEYWKQAIAL 149
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
823-897 |
5.02e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 40.15 E-value: 5.02e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1510352377 823 HMKDLDAAEKCYRSILHYEPQNTQGLHNLCVVFVERKRLAKAAAcLQYAQRLAPAEDYIGRHLQIVHSRLQKINK 897
Cdd:COG3063 4 KLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDE 77
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
824-881 |
6.47e-04 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 40.95 E-value: 6.47e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 1510352377 824 MKDLDAAEKCYRSILHYEPQNTQGLHNLCVVFVERKRLAKAAACLQYAQRLAPAEDYI 881
Cdd:COG4783 17 AGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEA 74
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
605-728 |
6.51e-04 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 43.00 E-value: 6.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 605 FINLANlIAKNQTRLEEADHLYRQAISMRSDYVQAYINRGDILMKLNRTAQAQEVYEQAL-LYDSENADIYYNLGVvfLE 683
Cdd:cd24142 3 LLEKAE-ELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIeLDPDGGYEKYLYLGQ--LS 79
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 1510352377 684 QGKsqQAQVYFNKAIELYPEHEQALLNSAILLQELGGEEARKVSR 728
Cdd:cd24142 80 GGE--EALQYYEKGIEILEEELQALQAASAEAEEEAEELKRKLSS 122
|
|
| TPR_8 |
pfam13181 |
Tetratricopeptide repeat; |
637-669 |
1.40e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 404131 [Multi-domain] Cd Length: 33 Bit Score: 36.99 E-value: 1.40e-03
10 20 30
....*....|....*....|....*....|...
gi 1510352377 637 VQAYINRGDILMKLNRTAQAQEVYEQALLYDSE 669
Cdd:pfam13181 1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
611-774 |
1.48e-03 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 42.38 E-value: 1.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 611 LIAKNQTRLeeADHLYRQaismRSdyvqayinRGDILMKLNRTAQAQEVYEQALLYDSENADIYYNLGVVFLEQGKSQQA 690
Cdd:PRK11447 257 QLAEQQKQL--ADPAFRA----RA--------QGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARA 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 691 QVYFNKAIELYPEHE-----QALLNSA---ILLQElgGEEARKVSR----SRLY-KVLAKDDHNEKVYFNLGMLAMDESS 757
Cdd:PRK11447 323 VAQFEKALALDPHSSnrdkwESLLKVNrywLLIQQ--GDAALKANNlaqaERLYqQARQVDNTDSYAVLGLGDVAMARKD 400
|
170
....*....|....*..
gi 1510352377 758 FEEAEQFFKRAIHLKSD 774
Cdd:PRK11447 401 YAAAERYYQQALRMDPG 417
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
527-598 |
1.98e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 38.82 E-value: 1.98e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1510352377 527 GHALENEGGYEEALLYFQEAVRIQTDDI---GAHINVGRTLNNLKRYAEAEQAYVKAKALFPQakpgvSYHARIA 598
Cdd:COG1729 37 GEAYYALGDYDEAAEAFEKLLKRYPDSPkapDALLKLGLSYLELGDYDKARATLEELIKKYPD-----SEAAKEA 106
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
618-674 |
2.33e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 37.18 E-value: 2.33e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 1510352377 618 RLEEADHLYRQAISMRSDYVQAYINRGDILMKLNRTAQAQEVYEQALLYDSENADIY 674
Cdd:pfam14559 3 DYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYA 59
|
|
| SNAP |
cd15832 |
Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family; Members of the ... |
568-701 |
3.70e-03 |
|
Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family; Members of the soluble NSF attachment protein (SNAP) family are involved in intracellular membrane trafficking, including vesicular transport between the endoplasmic reticulum and Golgi apparatus. Higher eukaryotes contain three isoforms of SNAPs: alpha, beta, and gamma. Alpha-SNAP is universally present in eukaryotes and acts as an adaptor protein between SNARE (integral membrane SNAP receptor) and NSF for recruitment to the 20S complex. Beta-SNAP is brain-specific and shares high sequence identity (about 85%) with alpha-SNAP. Gamma-SNAP is weakly related (about 20-25% identity) to the two other isoforms, and is ubiquitous. It may help regulate the activity of the 20S complex. The X-ray structures of vertebrate gamma-SNAP and yeast Sec17, a SNAP family member, show similar all-helical structures consisting of an N-terminal extended twisted sheet of four Tetratricopeptide repeat (TPR)-like helical hairpins and a C-terminal helical bundle.
Pssm-ID: 276937 [Multi-domain] Cd Length: 278 Bit Score: 40.26 E-value: 3.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 568 KRYAEAEQAYVKAKALfpQAKPGVSYHARiapnhlNVFINLANLIAKNQTrlEEADHLYRQAISMrsdyvqaYINRGdil 647
Cdd:cd15832 46 KNWEEAGDAFLKAAEC--QLKLDSKHDAA------NAYVEAAKCYKKVDP--QEAVNCLEKAIEI-------YTEMG--- 105
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1510352377 648 mKLNRTAQAQ----EVYEQALLyDSENADIYYNL-GVVF-LEQGKSQQAQVY------------FNKAIELY 701
Cdd:cd15832 106 -RFRQAAKHLkeiaELYENELG-DLDKAIEAYEQaADYYeGEGANSLANKCYlkvadlaaqledYDKAIEIY 175
|
|
| PRK11189 |
PRK11189 |
lipoprotein NlpI; Provisional |
648-715 |
4.39e-03 |
|
lipoprotein NlpI; Provisional
Pssm-ID: 236875 [Multi-domain] Cd Length: 296 Bit Score: 40.26 E-value: 4.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 648 MKLNRTAQAQEVYEQALLYDS-------------------ENADIYYNLGVVFLEQGKSQQAQVYFNKAIELYPEHEQAL 708
Cdd:PRK11189 56 RDLTDEERAQLHYERGVLYDSlglralarndfsqalalrpDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAY 135
|
....*..
gi 1510352377 709 LNSAILL 715
Cdd:PRK11189 136 LNRGIAL 142
|
|
| TPR_6 |
pfam13174 |
Tetratricopeptide repeat; |
672-704 |
6.19e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 463800 [Multi-domain] Cd Length: 33 Bit Score: 35.14 E-value: 6.19e-03
10 20 30
....*....|....*....|....*....|...
gi 1510352377 672 DIYYNLGVVFLEQGKSQQAQVYFNKAIELYPEH 704
Cdd:pfam13174 1 DALLKLALAYLELGDTDEAKEALERLIKKYPDS 33
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
743-775 |
7.56e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 35.09 E-value: 7.56e-03
10 20 30
....*....|....*....|....*....|...
gi 1510352377 743 KVYFNLGMLAMDESSFEEAEQFFKRAIHLKSDF 775
Cdd:pfam00515 2 KALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
527-587 |
8.53e-03 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 35.77 E-value: 8.53e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1510352377 527 GHALENEGGYEEALLYFQEAVRIQT---DDIGAHINVGRTLNNLKRYAEAEQAYVKAKALFPQA 587
Cdd:pfam13432 4 ARAALRAGDYDDAAAALEAALARFPespDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGD 67
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
556-633 |
8.86e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 36.21 E-value: 8.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510352377 556 AHINVGRTLNNLKRYAEAEQAYVKAKALFpQAKPGvsyhariaPNHLNVFINLANL--IAKNQTRLEEADHLYRQAISMR 633
Cdd:pfam13424 5 ALNNLAAVLRRLGRYDEALELLEKALEIA-RRLLG--------PDHPLTATTLLNLgrLYLELGRYEEALELLERALALA 75
|
|
| |
