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Conserved domains on  [gi|1494789316|ref|XP_026691022|]
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homocysteine S-methyltransferase 1-like [Ciona intestinalis]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK07534 super family cl22882
betaine--homocysteine S-methyltransferase;
6-297 1.99e-100

betaine--homocysteine S-methyltransferase;


The actual alignment was detected with superfamily member PRK09485:

Pssm-ID: 473986 [Multi-domain]  Cd Length: 304  Bit Score: 296.77  E-value: 1.99e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494789316   6 ILDGGLCTDLFINGgfvrAEVNkDPLWSARVLYEKPEEIMKAHLRFIKAGSDVVSTCSYQASVQGYMEHAqVTKEKAEKI 85
Cdd:PRK09485   15 ILDGALATELEARG----CDLN-DSLWSAKVLLENPELIYQVHLDYFRAGADCAITASYQATFQGFAARG-LSEAEAEEL 88
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494789316  86 IGSSVDVAKQAVQESGR-RVLVAGSISPYGAILHDMSEYTGSYidTTSEQQLSDFHKTNIRILASKGVDLFAFETLPSLK 164
Cdd:PRK09485   89 IRRSVELAKEARDEFWAeKPLVAGSVGPYGAYLADGSEYRGDY--GLSEEELQDFHRPRIEALAEAGADLLACETIPNLD 166
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494789316 165 EALVLAEILR-EYPTLKAWVSFSNKNGTHTCYGEPFEEVFKALGNYHQIIAIGLNCCKSETISSFIQLAHGNLAKHqrLI 243
Cdd:PRK09485  167 EAEALVELLKeEFPGVPAWLSFTLRDGTHISDGTPLAEAAALLAASPQVVAVGVNCTAPELVTAAIAALRAVTDKP--LV 244
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1494789316 244 IYPnncaggnvNSSEaplEWLPKVKTW--------LESNLIGW-------IGGCCMTSPFQIGQIKQAV 297
Cdd:PRK09485  245 VYP--------NSGE---VYDAVTKTWhgpaddasLGELAPEWyaagarlIGGCCRTTPEDIAALAAAL 302
 
Name Accession Description Interval E-value
mmuM PRK09485
homocysteine methyltransferase; Provisional
6-297 1.99e-100

homocysteine methyltransferase; Provisional


Pssm-ID: 181899 [Multi-domain]  Cd Length: 304  Bit Score: 296.77  E-value: 1.99e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494789316   6 ILDGGLCTDLFINGgfvrAEVNkDPLWSARVLYEKPEEIMKAHLRFIKAGSDVVSTCSYQASVQGYMEHAqVTKEKAEKI 85
Cdd:PRK09485   15 ILDGALATELEARG----CDLN-DSLWSAKVLLENPELIYQVHLDYFRAGADCAITASYQATFQGFAARG-LSEAEAEEL 88
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494789316  86 IGSSVDVAKQAVQESGR-RVLVAGSISPYGAILHDMSEYTGSYidTTSEQQLSDFHKTNIRILASKGVDLFAFETLPSLK 164
Cdd:PRK09485   89 IRRSVELAKEARDEFWAeKPLVAGSVGPYGAYLADGSEYRGDY--GLSEEELQDFHRPRIEALAEAGADLLACETIPNLD 166
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494789316 165 EALVLAEILR-EYPTLKAWVSFSNKNGTHTCYGEPFEEVFKALGNYHQIIAIGLNCCKSETISSFIQLAHGNLAKHqrLI 243
Cdd:PRK09485  167 EAEALVELLKeEFPGVPAWLSFTLRDGTHISDGTPLAEAAALLAASPQVVAVGVNCTAPELVTAAIAALRAVTDKP--LV 244
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1494789316 244 IYPnncaggnvNSSEaplEWLPKVKTW--------LESNLIGW-------IGGCCMTSPFQIGQIKQAV 297
Cdd:PRK09485  245 VYP--------NSGE---VYDAVTKTWhgpaddasLGELAPEWyaagarlIGGCCRTTPEDIAALAAAL 302
MHT1 COG2040
Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and ...
1-300 2.07e-81

Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism];


Pssm-ID: 441643 [Multi-domain]  Cd Length: 301  Bit Score: 248.19  E-value: 2.07e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494789316   1 MEDIKILDGGLCTDLFINGGFVRaevnkDPLWSARVLYEKPEEIMKAHLRFIKAGSDVVSTCSYQASVQGYMEHAqVTKE 80
Cdd:COG2040    10 MGRILLLDGGMGTELERRGGDLL-----DPLWSAFALLEAPELVRAVHRDYFAAGADVITTNSYQASPDGLAELG-YSAE 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494789316  81 KAEKIIGSSVDVAKQAVQES--GRRVLVAGSISPYGailhdmSEYTGSYidTTSEQQLSDFHKTNIRILASKGVDLFAFE 158
Cdd:COG2040    84 EAERLNRRAVALAREARDEYtpGPPVLVAGSVGPYG------DEYRPDY--GLSAEEAEAYHRPRIEALAEAGVDLLAAE 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494789316 159 TLPSLKEALVLAEILREYPtLKAWVSFSNKNGTHTCYGEPFEEVFKALGNYHQIIAIGLNCCKSETISSFIQLAHGNLAK 238
Cdd:COG2040   156 TIPSLAEAIAIARAAAEAG-KPVWISFTVEDDGRLRSGEPLAEAIAAVDTDPGPAAVGVNCSHPEHFEAALEALAAWTGR 234
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1494789316 239 hqRLIIYPN---------NCAGGNVNSSeaPLEWLPKVKTWLESNL-IgwIGGCCMTSPFQIGQIKQAVMEW 300
Cdd:COG2040   235 --PIGVYANagemsdaelKTWGGLDDGD--PEELAEQAAEWVAAGArI--IGGCCGTGPRHIAAIARALRAA 300
S-methyl_trans pfam02574
Homocysteine S-methyltransferase; This is a family of related homocysteine ...
6-297 5.53e-79

Homocysteine S-methyltransferase; This is a family of related homocysteine S-methyltransferases enzymes: 5-methyltetrahydrofolate--homocysteine S-methyltransferases also known EC:2.1.1.13; Betaine--homocysteine S-methyltransferase (vitamin B12 dependent), EC:2.1.1.5; and Homocysteine S-methyltransferase, EC:2.1.1.10,.


Pssm-ID: 460598 [Multi-domain]  Cd Length: 268  Bit Score: 240.90  E-value: 5.53e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494789316   6 ILDGGLCTDLFINGGFVraevnKDPLWSARVLyEKPEEIMKAHLRFIKAGSDVVSTCSYQASVQGYMEHAQvTKEKAEKI 85
Cdd:pfam02574   2 ILDGGMGTELQRRGLDL-----TEPLWSNELL-TRPEIIREIHRDYLEAGADIIETNTYQASPIKLAEGLE-EEEAVYEL 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494789316  86 IGSSVDVAKQAVQEsgrrVLVAGSISPYGAILHDmseytgSYidTTSEQQLSDFHKTNIRILASKGVDLFAFETLPSLKE 165
Cdd:pfam02574  75 NRAAVRLAREAADE----YFVAGSIGPYGATLSD------GY--GLSFDELVDFHREQLEALLDGGVDLLLFETIPDLLE 142
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494789316 166 ALVLAEILREYPTLKAWVSFSNKNGTHTCYGEPFEEVFKALGNYHQIIAIGLNCCKSETISSFIQLAHGNlaKHQRLIIY 245
Cdd:pfam02574 143 AKAALELLAEEPDLPVWISFTIEDGTRLRSGTTLEAAVAALLHATGPLAVGVNCALPEEMLPLLKELAKD--APTPVSVY 220
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1494789316 246 PNncAGGNVnSSEAPLEWLPKVKTWLESNLiGWIGGCCMTSPFQIGQIKQAV 297
Cdd:pfam02574 221 PN--STGEV-YDLTPEEWAEYAEGWLEAGA-NIIGGCCGTTPEHIRAIAEAL 268
 
Name Accession Description Interval E-value
mmuM PRK09485
homocysteine methyltransferase; Provisional
6-297 1.99e-100

homocysteine methyltransferase; Provisional


Pssm-ID: 181899 [Multi-domain]  Cd Length: 304  Bit Score: 296.77  E-value: 1.99e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494789316   6 ILDGGLCTDLFINGgfvrAEVNkDPLWSARVLYEKPEEIMKAHLRFIKAGSDVVSTCSYQASVQGYMEHAqVTKEKAEKI 85
Cdd:PRK09485   15 ILDGALATELEARG----CDLN-DSLWSAKVLLENPELIYQVHLDYFRAGADCAITASYQATFQGFAARG-LSEAEAEEL 88
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494789316  86 IGSSVDVAKQAVQESGR-RVLVAGSISPYGAILHDMSEYTGSYidTTSEQQLSDFHKTNIRILASKGVDLFAFETLPSLK 164
Cdd:PRK09485   89 IRRSVELAKEARDEFWAeKPLVAGSVGPYGAYLADGSEYRGDY--GLSEEELQDFHRPRIEALAEAGADLLACETIPNLD 166
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494789316 165 EALVLAEILR-EYPTLKAWVSFSNKNGTHTCYGEPFEEVFKALGNYHQIIAIGLNCCKSETISSFIQLAHGNLAKHqrLI 243
Cdd:PRK09485  167 EAEALVELLKeEFPGVPAWLSFTLRDGTHISDGTPLAEAAALLAASPQVVAVGVNCTAPELVTAAIAALRAVTDKP--LV 244
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1494789316 244 IYPnncaggnvNSSEaplEWLPKVKTW--------LESNLIGW-------IGGCCMTSPFQIGQIKQAV 297
Cdd:PRK09485  245 VYP--------NSGE---VYDAVTKTWhgpaddasLGELAPEWyaagarlIGGCCRTTPEDIAALAAAL 302
MHT1 COG2040
Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and ...
1-300 2.07e-81

Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism];


Pssm-ID: 441643 [Multi-domain]  Cd Length: 301  Bit Score: 248.19  E-value: 2.07e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494789316   1 MEDIKILDGGLCTDLFINGGFVRaevnkDPLWSARVLYEKPEEIMKAHLRFIKAGSDVVSTCSYQASVQGYMEHAqVTKE 80
Cdd:COG2040    10 MGRILLLDGGMGTELERRGGDLL-----DPLWSAFALLEAPELVRAVHRDYFAAGADVITTNSYQASPDGLAELG-YSAE 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494789316  81 KAEKIIGSSVDVAKQAVQES--GRRVLVAGSISPYGailhdmSEYTGSYidTTSEQQLSDFHKTNIRILASKGVDLFAFE 158
Cdd:COG2040    84 EAERLNRRAVALAREARDEYtpGPPVLVAGSVGPYG------DEYRPDY--GLSAEEAEAYHRPRIEALAEAGVDLLAAE 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494789316 159 TLPSLKEALVLAEILREYPtLKAWVSFSNKNGTHTCYGEPFEEVFKALGNYHQIIAIGLNCCKSETISSFIQLAHGNLAK 238
Cdd:COG2040   156 TIPSLAEAIAIARAAAEAG-KPVWISFTVEDDGRLRSGEPLAEAIAAVDTDPGPAAVGVNCSHPEHFEAALEALAAWTGR 234
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1494789316 239 hqRLIIYPN---------NCAGGNVNSSeaPLEWLPKVKTWLESNL-IgwIGGCCMTSPFQIGQIKQAVMEW 300
Cdd:COG2040   235 --PIGVYANagemsdaelKTWGGLDDGD--PEELAEQAAEWVAAGArI--IGGCCGTGPRHIAAIARALRAA 300
S-methyl_trans pfam02574
Homocysteine S-methyltransferase; This is a family of related homocysteine ...
6-297 5.53e-79

Homocysteine S-methyltransferase; This is a family of related homocysteine S-methyltransferases enzymes: 5-methyltetrahydrofolate--homocysteine S-methyltransferases also known EC:2.1.1.13; Betaine--homocysteine S-methyltransferase (vitamin B12 dependent), EC:2.1.1.5; and Homocysteine S-methyltransferase, EC:2.1.1.10,.


Pssm-ID: 460598 [Multi-domain]  Cd Length: 268  Bit Score: 240.90  E-value: 5.53e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494789316   6 ILDGGLCTDLFINGGFVraevnKDPLWSARVLyEKPEEIMKAHLRFIKAGSDVVSTCSYQASVQGYMEHAQvTKEKAEKI 85
Cdd:pfam02574   2 ILDGGMGTELQRRGLDL-----TEPLWSNELL-TRPEIIREIHRDYLEAGADIIETNTYQASPIKLAEGLE-EEEAVYEL 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494789316  86 IGSSVDVAKQAVQEsgrrVLVAGSISPYGAILHDmseytgSYidTTSEQQLSDFHKTNIRILASKGVDLFAFETLPSLKE 165
Cdd:pfam02574  75 NRAAVRLAREAADE----YFVAGSIGPYGATLSD------GY--GLSFDELVDFHREQLEALLDGGVDLLLFETIPDLLE 142
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494789316 166 ALVLAEILREYPTLKAWVSFSNKNGTHTCYGEPFEEVFKALGNYHQIIAIGLNCCKSETISSFIQLAHGNlaKHQRLIIY 245
Cdd:pfam02574 143 AKAALELLAEEPDLPVWISFTIEDGTRLRSGTTLEAAVAALLHATGPLAVGVNCALPEEMLPLLKELAKD--APTPVSVY 220
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1494789316 246 PNncAGGNVnSSEAPLEWLPKVKTWLESNLiGWIGGCCMTSPFQIGQIKQAV 297
Cdd:pfam02574 221 PN--STGEV-YDLTPEEWAEYAEGWLEAGA-NIIGGCCGTTPEHIRAIAEAL 268
PLN02489 PLN02489
homocysteine S-methyltransferase
6-299 6.87e-70

homocysteine S-methyltransferase


Pssm-ID: 215269  Cd Length: 335  Bit Score: 219.88  E-value: 6.87e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494789316   6 ILDGGLCTDLFINGgfvrAEVNkDPLWSARVLYEKPEEIMKAHLRFIKAGSDVVSTCSYQASVQGYmEHAQVTKEKAEKI 85
Cdd:PLN02489   24 VIDGGFATELERHG----ADLN-DPLWSAKCLITSPHLIRKVHLDYLEAGADIIITASYQATIQGF-ESRGLSREESETL 97
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494789316  86 IGSSVDVAKQAVQE-----------------SGRRVLVAGSISPYGAILHDMSEYTGSYIDTTSEQQLSDFHKTNIRILA 148
Cdd:PLN02489   98 LRKSVEIACEARDIfwdkcqkgstsrpgrelSYRPILVAASIGSYGAYLADGSEYSGDYGPSVTLEKLKDFHRRRLQVLA 177
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494789316 149 SKGVDLFAFETLPSLKEALVLAEILREYP-TLKAWVSFSNKNGTHTCYGEPFEEVFKALGNYHQIIAIGLNCCKSETISS 227
Cdd:PLN02489  178 EAGPDLIAFETIPNKLEAQAYVELLEEENiKIPAWISFNSKDGVNVVSGDSLLECASIADSCKKVVAVGINCTPPRFIHG 257
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494789316 228 FIQLAHGNLAKhqRLIIYPnncaggnvNSSEaplEWLPKVKTWLESNLIG----------W-------IGGCCMTSPFQI 290
Cdd:PLN02489  258 LILSIRKVTSK--PIVVYP--------NSGE---TYDGEAKEWVESTGVSdedfvsyvnkWrdagaslIGGCCRTTPNTI 324

                  ....*....
gi 1494789316 291 GQIKQAVME 299
Cdd:PLN02489  325 RAISKALSE 333
MetH1 COG0646
Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport ...
2-297 1.27e-24

Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]; Methionine synthase I (cobalamin-dependent), methyltransferase domain is part of the Pathway/BioSystem: Methionine biosynthesis


Pssm-ID: 440411 [Multi-domain]  Cd Length: 809  Bit Score: 103.77  E-value: 1.27e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494789316   2 EDIKILDGGLCT-----DLFInGGFVRAEVNKDpLWSarvlYEKPEEIMKAHLRFIKAGSDVVSTCSYQAS--VQG-Y-M 72
Cdd:COG0646    12 ERILILDGAMGTmlqayGLTE-GDFRGEKGCNE-LLN----LTRPDVIREIHRAYLEAGADIIETNTFGANriKLAdYgL 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494789316  73 EHaqvtkeKAEKIIGSSVDVAKQAVQE-SGRRVLVAGSI-------SPYGAIlhdmseytgsyidttSEQQLSDFHKTNI 144
Cdd:COG0646    86 ED------RVYEINRAAARLAREAADEfSDRPRFVAGSIgptgkllSPLGNI---------------TFDELVEAYREQA 144
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494789316 145 RILASKGVDLFAFETLPSLKEALVLAEILREYPTLKA-----WVSFS-NKNGThTCYGEPFEEVFKALGNYhQIIAIGLN 218
Cdd:COG0646   145 EGLIEGGVDLLLIETIFDTLEAKAAIFAAREAFEELGrdlpvMVSGTfDASGR-TLSGQTPEAFATSLEHL-GPDAIGLN 222
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494789316 219 CC-KSETISSFIQlahgNLAKHQR--LIIYPNncAG------GNVNSSEAPLEWLPKVKTWLESNLIGWIGGCCMTSPFQ 289
Cdd:COG0646   223 CAlGPDEMRPHVE----ELSEVADtpVSAYPN--AGlpnlvgGRTVYDETPEEMAEYAEEFAEAGGVNIVGGCCGTTPEH 296

                  ....*...
gi 1494789316 290 IGQIKQAV 297
Cdd:COG0646   297 IRAIAEAV 304
PRK08645 PRK08645
bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; ...
40-297 2.04e-19

bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed


Pssm-ID: 236321 [Multi-domain]  Cd Length: 612  Bit Score: 88.36  E-value: 2.04e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494789316  40 KPEEIMKAHLRFIKAGSDVVSTCSYQA-----SVQGYmehaqvtKEKAEKIIGSSVDVAKQAVqesGRRVLVAGSISPYG 114
Cdd:PRK08645   41 HPELILRIHREYIEAGADVIQTNTFGAnriklKRYGL-------EDKVKEINRAAVRLAREAA---GDDVYVAGTIGPIG 110
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494789316 115 AILHDMSEYTGSYIDTTSEQqlsdfhktnIRILASKGVDLFAFETLPSLKEALVLAEILREYPTLKAWVSFSNKNGTHTC 194
Cdd:PRK08645  111 GRGPLGDISLEEIRREFREQ---------IDALLEEGVDGLLLETFYDLEELLLALEAAREKTDLPIIAQVAFHEDGVTQ 181
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494789316 195 YGEPFEEVFKALGNYhQIIAIGLNCC--KSETISSFIQLAhgnLAKHQRLIIYPNncAGgnvnsseaplewLPKV---KT 269
Cdd:PRK08645  182 NGTSLEEALKELVAA-GADVVGLNCGlgPYHMLEALERIP---IPENAPLSAYPN--AG------------LPEYvdgRY 243
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1494789316 270 WLESN----------LIG----WIGGCCMTSPFQIGQIKQAV 297
Cdd:PRK08645  244 VYSANpeyfaeyaleFVEqgvrLIGGCCGTTPEHIRAMARAL 285
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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