NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1387278134|ref|XP_024850865|]
View 

paralemmin-1 isoform X2 [Bos taurus]

Protein Classification

Paralemmin domain-containing protein( domain architecture ID 10505538)

Paralemmin domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
Paralemmin pfam03285
Paralemmin;
19-350 3.79e-110

Paralemmin;


:

Pssm-ID: 460875  Cd Length: 301  Bit Score: 324.78  E-value: 3.79e-110
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387278134  19 AEKRRRQAEIENRRRQLEDDRRQLQHLKSKALRERWLLEGTPSSASEGDEDMRRQMQEDEQKARHLEESISRLEQEIEEL 98
Cdd:pfam03285   1 AEKRKRQTEIENKRRQLEDDRRQLQHLKSKALRERWLLEGPPSSASEEDEARRRQEEEDEQKKKLLEEIIRRLEEEIELL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387278134  99 ENTDALPTAtargsvaapspapgpalrpapedqraeavpnsqqtpvgtpkeKQISNTPLRtvdgstmmkaamysvEITVE 178
Cdd:pfam03285  81 EEESSISAK------------------------------------------KENLAEKLL---------------EITVE 103
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387278134 179 KDKVTGETRVLSSTTVLPRELLPQGIKVYEDETKVVHAM---DGTAENGIHPLSSSEVDELIHKADEVTLNEAGSVVGAV 255
Cdd:pfam03285 104 KDKVTGETRVLSSTTLLPDDVQPQGVKVYDDETKVVHEVsggDGTEENGVHPLSSSEVEELIHKADEVTLGEGGSTAAPE 183
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387278134 256 ET----RGPSEEAVRTTPSRR------------EITGVQAQPGEATSGPPGIQPGQEPPVTMIFMGYQNVEDEAETQKVL 319
Cdd:pfam03285 184 VRgtadGGDVSPKEEMTPKRAklemvhkprkdhEITGVEAQPGETTSEPPGAAASAEPPVTMIFMGYQNVEDEEETKKVL 263
                         330       340       350
                  ....*....|....*....|....*....|....*...
gi 1387278134 320 GLQDTITAELVVIEDAAEPKEPA-------PPNGSAAE 350
Cdd:pfam03285 264 GLETTIKAELVVIEDDEEKLREKtvtddstIPNGAAAE 301
 
Name Accession Description Interval E-value
Paralemmin pfam03285
Paralemmin;
19-350 3.79e-110

Paralemmin;


Pssm-ID: 460875  Cd Length: 301  Bit Score: 324.78  E-value: 3.79e-110
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387278134  19 AEKRRRQAEIENRRRQLEDDRRQLQHLKSKALRERWLLEGTPSSASEGDEDMRRQMQEDEQKARHLEESISRLEQEIEEL 98
Cdd:pfam03285   1 AEKRKRQTEIENKRRQLEDDRRQLQHLKSKALRERWLLEGPPSSASEEDEARRRQEEEDEQKKKLLEEIIRRLEEEIELL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387278134  99 ENTDALPTAtargsvaapspapgpalrpapedqraeavpnsqqtpvgtpkeKQISNTPLRtvdgstmmkaamysvEITVE 178
Cdd:pfam03285  81 EEESSISAK------------------------------------------KENLAEKLL---------------EITVE 103
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387278134 179 KDKVTGETRVLSSTTVLPRELLPQGIKVYEDETKVVHAM---DGTAENGIHPLSSSEVDELIHKADEVTLNEAGSVVGAV 255
Cdd:pfam03285 104 KDKVTGETRVLSSTTLLPDDVQPQGVKVYDDETKVVHEVsggDGTEENGVHPLSSSEVEELIHKADEVTLGEGGSTAAPE 183
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387278134 256 ET----RGPSEEAVRTTPSRR------------EITGVQAQPGEATSGPPGIQPGQEPPVTMIFMGYQNVEDEAETQKVL 319
Cdd:pfam03285 184 VRgtadGGDVSPKEEMTPKRAklemvhkprkdhEITGVEAQPGETTSEPPGAAASAEPPVTMIFMGYQNVEDEEETKKVL 263
                         330       340       350
                  ....*....|....*....|....*....|....*...
gi 1387278134 320 GLQDTITAELVVIEDAAEPKEPA-------PPNGSAAE 350
Cdd:pfam03285 264 GLETTIKAELVVIEDDEEKLREKtvtddstIPNGAAAE 301
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
12-112 1.69e-05

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 46.30  E-value: 1.69e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387278134  12 QERLQAIAEKRRRQAEIENRRRQLEDDRRQLQHLKSKALRERWLLEGTPSSASEGDEDMRRQMQEDEQKARHLEESISRL 91
Cdd:COG4942   146 PARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEEL 225
                          90       100
                  ....*....|....*....|.
gi 1387278134  92 EQEIEELENTDALPTATARGS 112
Cdd:COG4942   226 EALIARLEAEAAAAAERTPAA 246
DDRRRQL_YjdP NF041443
DDRRRQL repeat protein YjdP; Members of this family average 108 amino acids in length, with a ...
22-80 2.57e-04

DDRRRQL repeat protein YjdP; Members of this family average 108 amino acids in length, with a signal peptide and with a highly charged C-terminal region of typically five tandem 7-mer repeats approximated by DDRRRQL. The family is named for founding member YjdP from Escherichia coli K-12.


Pssm-ID: 469333 [Multi-domain]  Cd Length: 102  Bit Score: 39.97  E-value: 2.57e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1387278134  22 RRRQaeIENRRRQLEDDRRQLQHlkskalRERWLlegtpssasegDEDmRRQMQEDEQK 80
Cdd:NF041443   63 RRRQ--YDDRRRQLEDRRRQLDD------RQRQL-----------DQE-RRQLEDEERR 101
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
9-101 3.73e-03

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 39.67  E-value: 3.73e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387278134    9 PSQQERLQAIAEKRRRQAEIENRRRQLEDDRRQLQHLKS--KALRER-WLLEGTPSSASEGDEDMRRQMQEDEQKARHLE 85
Cdd:TIGR02169  403 ELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEekEDKALEiKKQEWKLEQLAADLSKYEQELYDLKEEYDRVE 482
                           90
                   ....*....|....*.
gi 1387278134   86 ESISRLEQEIEELENT 101
Cdd:TIGR02169  483 KELSKLQRELAEAEAQ 498
PRK12704 PRK12704
phosphodiesterase; Provisional
12-100 8.43e-03

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 38.22  E-value: 8.43e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387278134  12 QERLQAIAEKRRRQA--EIENRRRQLEDD----RRQLQHLKSKaLRERwllEGTPSSASEGDEDMRRQMQEDEQKARHLE 85
Cdd:PRK12704   48 KKEAEAIKKEALLEAkeEIHKLRNEFEKElrerRNELQKLEKR-LLQK---EENLDRKLELLEKREEELEKKEKELEQKQ 123
                          90
                  ....*....|....*
gi 1387278134  86 ESISRLEQEIEELEN 100
Cdd:PRK12704  124 QELEKKEEELEELIE 138
 
Name Accession Description Interval E-value
Paralemmin pfam03285
Paralemmin;
19-350 3.79e-110

Paralemmin;


Pssm-ID: 460875  Cd Length: 301  Bit Score: 324.78  E-value: 3.79e-110
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387278134  19 AEKRRRQAEIENRRRQLEDDRRQLQHLKSKALRERWLLEGTPSSASEGDEDMRRQMQEDEQKARHLEESISRLEQEIEEL 98
Cdd:pfam03285   1 AEKRKRQTEIENKRRQLEDDRRQLQHLKSKALRERWLLEGPPSSASEEDEARRRQEEEDEQKKKLLEEIIRRLEEEIELL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387278134  99 ENTDALPTAtargsvaapspapgpalrpapedqraeavpnsqqtpvgtpkeKQISNTPLRtvdgstmmkaamysvEITVE 178
Cdd:pfam03285  81 EEESSISAK------------------------------------------KENLAEKLL---------------EITVE 103
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387278134 179 KDKVTGETRVLSSTTVLPRELLPQGIKVYEDETKVVHAM---DGTAENGIHPLSSSEVDELIHKADEVTLNEAGSVVGAV 255
Cdd:pfam03285 104 KDKVTGETRVLSSTTLLPDDVQPQGVKVYDDETKVVHEVsggDGTEENGVHPLSSSEVEELIHKADEVTLGEGGSTAAPE 183
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387278134 256 ET----RGPSEEAVRTTPSRR------------EITGVQAQPGEATSGPPGIQPGQEPPVTMIFMGYQNVEDEAETQKVL 319
Cdd:pfam03285 184 VRgtadGGDVSPKEEMTPKRAklemvhkprkdhEITGVEAQPGETTSEPPGAAASAEPPVTMIFMGYQNVEDEEETKKVL 263
                         330       340       350
                  ....*....|....*....|....*....|....*...
gi 1387278134 320 GLQDTITAELVVIEDAAEPKEPA-------PPNGSAAE 350
Cdd:pfam03285 264 GLETTIKAELVVIEDDEEKLREKtvtddstIPNGAAAE 301
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
12-112 1.69e-05

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 46.30  E-value: 1.69e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387278134  12 QERLQAIAEKRRRQAEIENRRRQLEDDRRQLQHLKSKALRERWLLEGTPSSASEGDEDMRRQMQEDEQKARHLEESISRL 91
Cdd:COG4942   146 PARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEEL 225
                          90       100
                  ....*....|....*....|.
gi 1387278134  92 EQEIEELENTDALPTATARGS 112
Cdd:COG4942   226 EALIARLEAEAAAAAERTPAA 246
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
12-101 5.38e-05

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 45.14  E-value: 5.38e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387278134  12 QERLQAIAEKRRRQAEIENRRRQLEDDRRQLQHLKSKALRERWllegtpSSASEGDEDMRRQMQEDEQKARHLEESISRL 91
Cdd:COG4717   152 EERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEEL------QDLAEELEELQQRLAELEEELEEAQEELEEL 225
                          90
                  ....*....|
gi 1387278134  92 EQEIEELENT 101
Cdd:COG4717   226 EEELEQLENE 235
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
13-110 2.47e-04

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 43.22  E-value: 2.47e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387278134  13 ERLQAIAEKRRRQAEIENRRRQLEDDRRQLqhlksKALRERWLLEGTPSSASEGDEDMRRQMQEDEQKARHLEESISRLE 92
Cdd:COG4717   385 EELRAALEQAEEYQELKEELEELEEQLEEL-----LGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELE 459
                          90
                  ....*....|....*...
gi 1387278134  93 QEIEELENTDALPTATAR 110
Cdd:COG4717   460 AELEQLEEDGELAELLQE 477
DDRRRQL_YjdP NF041443
DDRRRQL repeat protein YjdP; Members of this family average 108 amino acids in length, with a ...
22-80 2.57e-04

DDRRRQL repeat protein YjdP; Members of this family average 108 amino acids in length, with a signal peptide and with a highly charged C-terminal region of typically five tandem 7-mer repeats approximated by DDRRRQL. The family is named for founding member YjdP from Escherichia coli K-12.


Pssm-ID: 469333 [Multi-domain]  Cd Length: 102  Bit Score: 39.97  E-value: 2.57e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1387278134  22 RRRQaeIENRRRQLEDDRRQLQHlkskalRERWLlegtpssasegDEDmRRQMQEDEQK 80
Cdd:NF041443   63 RRRQ--YDDRRRQLEDRRRQLDD------RQRQL-----------DQE-RRQLEDEERR 101
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
12-100 3.59e-04

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 42.45  E-value: 3.59e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387278134  12 QERLQAIAEKRRRQAEIENRRRQLEDDRRQLQhlksKALRErwLLEGTPSSASEGDEDMRRQMQEDEQKARHLEESISRL 91
Cdd:COG4717   145 PERLEELEERLEELRELEEELEELEAELAELQ----EELEE--LLEQLSLATEEELQDLAEELEELQQRLAELEEELEEA 218

                  ....*....
gi 1387278134  92 EQEIEELEN 100
Cdd:COG4717   219 QEELEELEE 227
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
12-85 9.31e-04

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 41.26  E-value: 9.31e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1387278134  12 QERLQAIAE-KRRRQAEIENRRRQLEDDRRQLQHLKSKALRERWLLEgtpssASEGDEDMRRQMQEDEQKARHLE 85
Cdd:pfam17380 523 EERQKAIYEeERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLE-----AMEREREMMRQIVESEKARAEYE 592
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
11-104 1.04e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 41.46  E-value: 1.04e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387278134  11 QQERLQAIAEKRRRQAEIENRRRQLEDDRRQLQHLKSKALRerwllegtpssASEGDEDMRRQMQEDEQKARHLEESISR 90
Cdd:COG1196   252 EAELEELEAELAELEAELEELRLELEELELELEEAQAEEYE-----------LLAELARLEQDIARLEERRRELEERLEE 320
                          90
                  ....*....|....
gi 1387278134  91 LEQEIEELENTDAL 104
Cdd:COG1196   321 LEEELAELEEELEE 334
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
12-106 1.39e-03

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 40.91  E-value: 1.39e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387278134  12 QERLQAIAEKRRRQAEIENRRRQLEDDRRQLQHLKS--------KALRERwlLEGTPSSASEGDEDMRrQMQEDEQKARH 83
Cdd:COG4717    91 AELQEELEELEEELEELEAELEELREELEKLEKLLQllplyqelEALEAE--LAELPERLEELEERLE-ELRELEEELEE 167
                          90       100
                  ....*....|....*....|...
gi 1387278134  84 LEESISRLEQEIEELENTDALPT 106
Cdd:COG4717   168 LEAELAELQEELEELLEQLSLAT 190
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
11-99 1.55e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 40.69  E-value: 1.55e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387278134  11 QQERLQAIAEKRRRQAEIENRRRQLEDDRRQLQHLKSKALRERWLLEgtpsSASEGDEDMRRQMQEDEQKARHLEESISR 90
Cdd:COG1196   238 EAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELE----EAQAEEYELLAELARLEQDIARLEERRRE 313

                  ....*....
gi 1387278134  91 LEQEIEELE 99
Cdd:COG1196   314 LEERLEELE 322
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
11-99 2.80e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 39.92  E-value: 2.80e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387278134  11 QQERLQAIAEKRRRQAEIENRRRQLEDDRRQLQHLKSKALRERWLLEGTPSSASEGDEDMRRQMQEDEQKARhleesISR 90
Cdd:COG1196   697 EALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERE-----LER 771

                  ....*....
gi 1387278134  91 LEQEIEELE 99
Cdd:COG1196   772 LEREIEALG 780
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
9-101 3.73e-03

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 39.67  E-value: 3.73e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387278134    9 PSQQERLQAIAEKRRRQAEIENRRRQLEDDRRQLQHLKS--KALRER-WLLEGTPSSASEGDEDMRRQMQEDEQKARHLE 85
Cdd:TIGR02169  403 ELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEekEDKALEiKKQEWKLEQLAADLSKYEQELYDLKEEYDRVE 482
                           90
                   ....*....|....*.
gi 1387278134   86 ESISRLEQEIEELENT 101
Cdd:TIGR02169  483 KELSKLQRELAEAEAQ 498
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
10-99 7.46e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 38.50  E-value: 7.46e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387278134   10 SQQERLQAIAEKRRRQAEIENRRRQLEDDRRQLQHLKS--KALRERWL-LEGTPSSASEGDEDMRRQMQEDEQKARHLEE 86
Cdd:TIGR02168  773 AEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAelTLLNEEAAnLRERLESLERRIAATERRLEDLEEQIEELSE 852
                           90
                   ....*....|...
gi 1387278134   87 SISRLEQEIEELE 99
Cdd:TIGR02168  853 DIESLAAEIEELE 865
PRK12704 PRK12704
phosphodiesterase; Provisional
12-100 8.43e-03

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 38.22  E-value: 8.43e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387278134  12 QERLQAIAEKRRRQA--EIENRRRQLEDD----RRQLQHLKSKaLRERwllEGTPSSASEGDEDMRRQMQEDEQKARHLE 85
Cdd:PRK12704   48 KKEAEAIKKEALLEAkeEIHKLRNEFEKElrerRNELQKLEKR-LLQK---EENLDRKLELLEKREEELEKKEKELEQKQ 123
                          90
                  ....*....|....*
gi 1387278134  86 ESISRLEQEIEELEN 100
Cdd:PRK12704  124 QELEKKEEELEELIE 138
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
3-100 9.63e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 37.82  E-value: 9.63e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387278134   3 VLVAETPSQQErlqAIAEKRRRQAEIENRRRQLEDDRRQLQHLKSKALRERWLLEGTPSSAsegdedmRRQMQEDEQKAR 82
Cdd:COG4942    10 LLALAAAAQAD---AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAAL-------ARRIRALEQELA 79
                          90
                  ....*....|....*...
gi 1387278134  83 HLEESISRLEQEIEELEN 100
Cdd:COG4942    80 ALEAELAELEKEIAELRA 97
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH