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Conserved domains on  [gi|1379647032|ref|XP_024642257|]
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protein FAR1-RELATED SEQUENCE 5-like [Medicago truncatula]

Protein Classification

FHY3/FAR1 family protein( domain architecture ID 1001808)

FHY3/FAR1 family protein similar to FAR-RED ELONGATED HYPOCOTYL 3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) which are transcription factors that play multiple roles in a wide range of cellular processes and are crucial for plant growth and development, and to transposases of the Mutator-like element (MULE)

Gene Ontology:  GO:0003677
PubMed:  15591448

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
FHY3 super family cl31971
Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
 1-333 5.35e-31

Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional


The actual alignment was detected with superfamily member PLN03097:

Pssm-ID: 178645 [Multi-domain]  Cd Length: 846  Bit Score: 123.57  E-value: 5.35e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379647032   1 MANECSGFHKVGFVKKDLYNQVGKQRkQLYFDVSDA---VKYLKDLSLKDPLMFVTHTLDKDKRLERLFWSDGESQMNYE 77
Cdd:PLN03097  205 MARQFAEYKNVVGLKNDSKSSFDKGR-NLGLEAGDTkilLDFFTQMQNMNSNFFYAVDLGEDQRLKNLFWVDAKSRHDYG 283

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379647032  78 IFGDVIAFDVTYRKNKYNCPFVIFSSVNHHNHMIVFGAGIVTRETKETYVWLLEQFLSAMKGKHLLSVITDGDLAMRNAI 157
Cdd:PLN03097  284 NFSDVVSFDTTYVRNKYKMPLALFVGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAMGGQAPKVIITDQDKAMKSVI 363

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379647032 158 KK---NA-------------SSNIEIPV-----VMSYLKKCMLGDLEISAFEELWVEMVEKFGLQDNSWINEMcltyFRF 216
Cdd:PLN03097  364 SEvfpNAhhcfflwhilgkvSENLGQVIkqhenFMAKFEKCIYRSWTEEEFGKRWWKILDRFELKEDEWMQSL----YED 439

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379647032 217 RKiesDFHSNYGQLVLQTGLQSIERSAA-----------KLFTKEIFFMFRSVLKKalliritECQEMATSGSLYWDSQS 285
Cdd:PLN03097  440 RK---QWVPTYMRDAFLAGMSTVQRSESinaffdkyvhkKTTVQEFVKQYETILQD-------RYEEEAKADSDTWNKQP 509

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*....
gi 1379647032 286 AARYSGIVKmcKVVAGL-VYEDLDEYQhfVESLGAELRRLKIKNKVDTT 333
Cdd:PLN03097  510 ALKSPSPLE--KSVSGVyTHAVFKKFQ--VEVLGAVACHPKMESQDETS 554
 
Name Accession Description Interval E-value
FHY3 PLN03097
Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
 1-333 5.35e-31

Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional


Pssm-ID: 178645 [Multi-domain]  Cd Length: 846  Bit Score: 123.57  E-value: 5.35e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379647032   1 MANECSGFHKVGFVKKDLYNQVGKQRkQLYFDVSDA---VKYLKDLSLKDPLMFVTHTLDKDKRLERLFWSDGESQMNYE 77
Cdd:PLN03097  205 MARQFAEYKNVVGLKNDSKSSFDKGR-NLGLEAGDTkilLDFFTQMQNMNSNFFYAVDLGEDQRLKNLFWVDAKSRHDYG 283

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379647032  78 IFGDVIAFDVTYRKNKYNCPFVIFSSVNHHNHMIVFGAGIVTRETKETYVWLLEQFLSAMKGKHLLSVITDGDLAMRNAI 157
Cdd:PLN03097  284 NFSDVVSFDTTYVRNKYKMPLALFVGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAMGGQAPKVIITDQDKAMKSVI 363

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379647032 158 KK---NA-------------SSNIEIPV-----VMSYLKKCMLGDLEISAFEELWVEMVEKFGLQDNSWINEMcltyFRF 216
Cdd:PLN03097  364 SEvfpNAhhcfflwhilgkvSENLGQVIkqhenFMAKFEKCIYRSWTEEEFGKRWWKILDRFELKEDEWMQSL----YED 439

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379647032 217 RKiesDFHSNYGQLVLQTGLQSIERSAA-----------KLFTKEIFFMFRSVLKKalliritECQEMATSGSLYWDSQS 285
Cdd:PLN03097  440 RK---QWVPTYMRDAFLAGMSTVQRSESinaffdkyvhkKTTVQEFVKQYETILQD-------RYEEEAKADSDTWNKQP 509

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*....
gi 1379647032 286 AARYSGIVKmcKVVAGL-VYEDLDEYQhfVESLGAELRRLKIKNKVDTT 333
Cdd:PLN03097  510 ALKSPSPLE--KSVSGVyTHAVFKKFQ--VEVLGAVACHPKMESQDETS 554
MULE pfam10551
MULE transposase domain; This domain was identified by Babu and colleagues.
 82-158 6.07e-17

MULE transposase domain; This domain was identified by Babu and colleagues.


Pssm-ID: 463145 [Multi-domain]  Cd Length: 98  Bit Score: 74.99  E-value: 6.07e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379647032  82 VIAFDVTYRKNKYNCPFVIFSSVNHHNHMIVFGAGIVTRETKETYVWLLEQ---FLSAMKGKHLLSVITDGDLAMRNAIK 158
Cdd:pfam10551   1 VLLIDGTYKTNKYKMPLFTAVGVDHHGQSFPIAFGLVSNETEESFTWLFDQliaFRECMSGLSPQVIITDRDKALKNAIN 80
 
Name Accession Description Interval E-value
FHY3 PLN03097
Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
 1-333 5.35e-31

Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional


Pssm-ID: 178645 [Multi-domain]  Cd Length: 846  Bit Score: 123.57  E-value: 5.35e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379647032   1 MANECSGFHKVGFVKKDLYNQVGKQRkQLYFDVSDA---VKYLKDLSLKDPLMFVTHTLDKDKRLERLFWSDGESQMNYE 77
Cdd:PLN03097  205 MARQFAEYKNVVGLKNDSKSSFDKGR-NLGLEAGDTkilLDFFTQMQNMNSNFFYAVDLGEDQRLKNLFWVDAKSRHDYG 283

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379647032  78 IFGDVIAFDVTYRKNKYNCPFVIFSSVNHHNHMIVFGAGIVTRETKETYVWLLEQFLSAMKGKHLLSVITDGDLAMRNAI 157
Cdd:PLN03097  284 NFSDVVSFDTTYVRNKYKMPLALFVGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAMGGQAPKVIITDQDKAMKSVI 363

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379647032 158 KK---NA-------------SSNIEIPV-----VMSYLKKCMLGDLEISAFEELWVEMVEKFGLQDNSWINEMcltyFRF 216
Cdd:PLN03097  364 SEvfpNAhhcfflwhilgkvSENLGQVIkqhenFMAKFEKCIYRSWTEEEFGKRWWKILDRFELKEDEWMQSL----YED 439

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379647032 217 RKiesDFHSNYGQLVLQTGLQSIERSAA-----------KLFTKEIFFMFRSVLKKalliritECQEMATSGSLYWDSQS 285
Cdd:PLN03097  440 RK---QWVPTYMRDAFLAGMSTVQRSESinaffdkyvhkKTTVQEFVKQYETILQD-------RYEEEAKADSDTWNKQP 509

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*....
gi 1379647032 286 AARYSGIVKmcKVVAGL-VYEDLDEYQhfVESLGAELRRLKIKNKVDTT 333
Cdd:PLN03097  510 ALKSPSPLE--KSVSGVyTHAVFKKFQ--VEVLGAVACHPKMESQDETS 554
MULE pfam10551
MULE transposase domain; This domain was identified by Babu and colleagues.
 82-158 6.07e-17

MULE transposase domain; This domain was identified by Babu and colleagues.


Pssm-ID: 463145 [Multi-domain]  Cd Length: 98  Bit Score: 74.99  E-value: 6.07e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379647032  82 VIAFDVTYRKNKYNCPFVIFSSVNHHNHMIVFGAGIVTRETKETYVWLLEQ---FLSAMKGKHLLSVITDGDLAMRNAIK 158
Cdd:pfam10551   1 VLLIDGTYKTNKYKMPLFTAVGVDHHGQSFPIAFGLVSNETEESFTWLFDQliaFRECMSGLSPQVIITDRDKALKNAIN 80
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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