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Conserved domains on  [gi|1373959613|ref|XP_024357277|]
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uncharacterized protein LOC112273107 isoform X4 [Physcomitrium patens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ClpA super family cl33938
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ...
 117-219 1.24e-04

ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];


The actual alignment was detected with superfamily member COG0542:

Pssm-ID: 440308 [Multi-domain]  Cd Length: 836  Bit Score: 46.61  E-value: 1.24e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373959613  117 RILQLQEEKNSAVLSEDYDEAKRLKGLIDRLKIIGEEIKQLENKKQlaVEDEDYDTAKTCKEEIEKLHVQELLPDRQLAQ 196
Cdd:COG0542    419 RLEQLEIEKEALKKEQDEASFERLAELRDELAELEEELEALKARWE--AEKELIEEIQELKEELEQRYGKIPELEKELAE 496

                           90       100
                   ....*....|....*....|...
gi 1373959613  197 KVDVVSDCGISSEESVDEVHAAE 219
Cdd:COG0542    497 LEEELAELAPLLREEVTEEDIAE 519
 
Name Accession Description Interval E-value
ClpA COG0542
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ...
 117-219 1.24e-04

ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440308 [Multi-domain]  Cd Length: 836  Bit Score: 46.61  E-value: 1.24e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373959613  117 RILQLQEEKNSAVLSEDYDEAKRLKGLIDRLKIIGEEIKQLENKKQlaVEDEDYDTAKTCKEEIEKLHVQELLPDRQLAQ 196
Cdd:COG0542    419 RLEQLEIEKEALKKEQDEASFERLAELRDELAELEEELEALKARWE--AEKELIEEIQELKEELEQRYGKIPELEKELAE 496

                           90       100
                   ....*....|....*....|...
gi 1373959613  197 KVDVVSDCGISSEESVDEVHAAE 219
Cdd:COG0542    497 LEEELAELAPLLREEVTEEDIAE 519
 
Name Accession Description Interval E-value
ClpA COG0542
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ...
 117-219 1.24e-04

ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440308 [Multi-domain]  Cd Length: 836  Bit Score: 46.61  E-value: 1.24e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373959613  117 RILQLQEEKNSAVLSEDYDEAKRLKGLIDRLKIIGEEIKQLENKKQlaVEDEDYDTAKTCKEEIEKLHVQELLPDRQLAQ 196
Cdd:COG0542    419 RLEQLEIEKEALKKEQDEASFERLAELRDELAELEEELEALKARWE--AEKELIEEIQELKEELEQRYGKIPELEKELAE 496

                           90       100
                   ....*....|....*....|...
gi 1373959613  197 KVDVVSDCGISSEESVDEVHAAE 219
Cdd:COG0542    497 LEEELAELAPLLREEVTEEDIAE 519
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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