|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
686-1233 |
3.41e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 78.83 E-value: 3.41e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 686 QRHENETHTLEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQVKLEEEKTHLQEKLRLQHEME-LKARLTQA 764
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIArLEERRREL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 765 QASFEREREGLQSsawteekvrgLTQELEQFHQEQLTSLVEKHTLEKEELRKELLEKHQRELQEGREKMETECNRRTSQI 844
Cdd:COG1196 315 EERLEELEEELAE----------LEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEEL 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 845 EAQfQSDCQKVTERCESALQSLEGRyRQELKDLQEQQREEKSQWEFEKDELTQECAEAQELLKETLKREKTTSLVLTQER 924
Cdd:COG1196 385 AEE-LLEALRAAAELAAQLEELEEA-EEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALL 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 925 EMLEKTYKEhLNSMVVERQQLLQDLEDLRNVSETQQSLLSDQILELKSSHKRELREREEVLCQAGASEQLASQRLERLEM 1004
Cdd:COG1196 463 ELLAELLEE-AALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALE 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1005 EHDQERqeMMSKLLAMENIHKATCETADRERAEMSTEISRLQSKIKEMQQATSPLSMLQSGCQVIGEEEVEGDGALSLLQ 1084
Cdd:COG1196 542 AALAAA--LQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLG 619
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1085 Q---GEQLLEENGDVLLSLQRAHEQAVKENVKMATEISRLQQRLQKLEPGLVMSSCLDEP--------ATEFFGNTAEQT 1153
Cdd:COG1196 620 DtllGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAeleelaerLAEEELELEEAL 699
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1154 EQFLQQNRTKQVEGVTRRHVLSDLEDDEVRDLGSTGTSSVQRQEVKIEESEASVEGFSELENSEETRTESWELKNQISQL 1233
Cdd:COG1196 700 LAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
403-1052 |
6.02e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 74.59 E-value: 6.02e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 403 LERVDQVVREKEK----LRSDLDKAEKLKSLMASEVD-DHHAAIERRNEYNLRKldEEYKERIAALKNELRKEREQiLQQ 477
Cdd:COG1196 188 LERLEDILGELERqlepLERQAEKAERYRELKEELKElEAELLLLKLRELEAEL--EELEAELEELEAELEELEAE-LAE 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 478 AGKQRLELEQEIEKAKTEENYIRDRLALSLKENSRLENELLENAEKLAEYENltnklqrnlenvlaekfgdldpssaeff 557
Cdd:COG1196 265 LEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEE---------------------------- 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 558 lQEERLTQMRNEYERQCRVLQDQVDELQSELEEYRAQGRVLRLPLKNSPSEEVEAnsggiepehglgSEECNPLNMSIEA 637
Cdd:COG1196 317 -RLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEA------------EAELAEAEEELEE 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 638 ELVIEQMKEQHhrdicclRLELEDKVRHYEKQLDetvvsckkAQENMKQRHENETHTLEKQISDLKNEIAELQGQAAVLK 717
Cdd:COG1196 384 LAEELLEALRA-------AAELAAQLEELEEAEE--------ALLERLERLEEELEELEEALAELEEEEEEEEEALEEAA 448
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 718 EAHHEATCRHEEEKKQLQVKLEEEKTHLQEKLRLQHEMELKARLTQAQASFEREREGLqSSAWTEEKVRGLTQELEQFHQ 797
Cdd:COG1196 449 EEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGF-LEGVKAALLLAGLRGLAGAVA 527
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 798 EQLTSLVEKHTLEKEELRKELLEKHQRELQEGREKMETECNRRTSQIEAqFQSDCQKVTERCESALQSLEGRYRQELKDL 877
Cdd:COG1196 528 VLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATF-LPLDKIRARAALAAALARGAIGAAVDLVAS 606
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 878 QEQQREEKSQWEFEKDELTQECAEAQELLKETLKREKTTSLVLTQEREMLEKTYKEHLNSMVVERQQLLQDLEDLRNVSE 957
Cdd:COG1196 607 DLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAE 686
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 958 TQQSLLSDQILELKSshKRELREREEVLCQAGASEQLASQRLERLEMEHDQERQEMMSKLLAMENIHKATCETADRERAE 1037
Cdd:COG1196 687 RLAEEELELEEALLA--EEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEE 764
|
650
....*....|....*
gi 1370465130 1038 MSTEISRLQSKIKEM 1052
Cdd:COG1196 765 LERELERLEREIEAL 779
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
561-1130 |
1.03e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 73.82 E-value: 1.03e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 561 ERLTQMRNEYERQCRVLQDQVD------ELQSELEEYRAQGRVLRLplknspsEEVEANSGGIEPEHGLGSEECNPLNMS 634
Cdd:COG1196 189 ERLEDILGELERQLEPLERQAEkaeryrELKEELKELEAELLLLKL-------RELEAELEELEAELEELEAELEELEAE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 635 I-EAELVIEQMKEQHHRdiccLRLELEDKVRHYEKQLDEtvvscKKAQENMKQRHENETHTLEKQISDLKNEIAELQGQA 713
Cdd:COG1196 262 LaELEAELEELRLELEE----LELELEEAQAEEYELLAE-----LARLEQDIARLEERRRELEERLEELEEELAELEEEL 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 714 AVLKEAHHEATCRHEEEKKQLQVKLEEEKTHLQEKLRLQHEM-----ELKARLTQAQASFEREREGLQSSAWTEEKVRGL 788
Cdd:COG1196 333 EELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELaeaeeELEELAEELLEALRAAAELAAQLEELEEAEEAL 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 789 TQELEQFHQEQLTslvEKHTLEKEELRKELLEKHQRELQEGREKMETECNRRTSQIEAQFQSDCQKVTERCESALQSLEG 868
Cdd:COG1196 413 LERLERLEEELEE---LEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEA 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 869 RYRQELKDLQEQQREEKSQWEFEKDELTQEC---------------------------------------AEAQELLKET 909
Cdd:COG1196 490 AARLLLLLEAEADYEGFLEGVKAALLLAGLRglagavavligveaayeaaleaalaaalqnivveddevaAAAIEYLKAA 569
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 910 lKREKTTSLVLTQEREMLEKTYKEHLNSMVVERQQLLQDLEDLRNVSETQQSLLSDQILElkSSHKRELREREEVLCQAG 989
Cdd:COG1196 570 -KAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLV--AARLEAALRRAVTLAGRL 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 990 ASEQLASQRLERLEMEHDQERQEMMSKLLAMENIHKATCETADRERAEMSTEISRLQSKIKEMQQATSPLSMLQsgcqvI 1069
Cdd:COG1196 647 REVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEE-----L 721
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1370465130 1070 GEEEVEGDGALSLLQQGEQLLEENGDVLLSLQRAHEQAVKENvKMATEISRLQQRLQKLEP 1130
Cdd:COG1196 722 EEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLE-ELERELERLEREIEALGP 781
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
437-855 |
1.98e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 73.17 E-value: 1.98e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 437 HHAAIERRNEYnlrkldEEYKERIAALKNELRkEREQILQQAGKQRLELEQEIEKAKTEENYIRDRLALSLKENSRLENE 516
Cdd:TIGR02168 669 NSSILERRREI------EELEEKIEELEEKIA-ELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAE 741
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 517 lLENAEKLAEYENLTNKLQRNLENVLAEKFGDLDPSSAEFFLQEERLTQMRNEYERQCRVLQDQVDELQSELEEYRAQGR 596
Cdd:TIGR02168 742 -VEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAA 820
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 597 VLRLPLKNSPSEEVEAnsggiepehglgseecnplnmSIEAElVIEQMKEQHHRDICCLRLELEDKVRHYEKQLDETvvs 676
Cdd:TIGR02168 821 NLRERLESLERRIAAT---------------------ERRLE-DLEEQIEELSEDIESLAAEIEELEELIEELESEL--- 875
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 677 ckKAQENMKQRHENETHTLEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQvKLEEEKTHLQEKLRLQHEME 756
Cdd:TIGR02168 876 --EALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLE-GLEVRIDNLQERLSEEYSLT 952
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 757 LkarltQAQASFEREREGLQSSAwtEEKVRGLTQELEQFHQEQLTSLVEkhtLEKEELRKELLEKHQRELQEGREKME-- 834
Cdd:TIGR02168 953 L-----EEAEALENKIEDDEEEA--RRRLKRLENKIKELGPVNLAAIEE---YEELKERYDFLTAQKEDLTEAKETLEea 1022
|
410 420 430
....*....|....*....|....*....|
gi 1370465130 835 -TECNRRTS--------QIEAQFQSDCQKV 855
Cdd:TIGR02168 1023 iEEIDREARerfkdtfdQVNENFQRVFPKL 1052
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
731-1365 |
1.56e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 69.97 E-value: 1.56e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 731 KKQLQvKLEEEKTHLQEKLRLQHEMELKarltQAQASFEREREGLQSSAWTEEKVRGLTQELEQF--HQEQLTSLVEKHT 808
Cdd:COG1196 199 ERQLE-PLERQAEKAERYRELKEELKEL----EAELLLLKLRELEAELEELEAELEELEAELEELeaELAELEAELEELR 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 809 LEKEELRKELLEKHQRELQEGREKmetecnrrtsqieaqfqsdcqkvtERCESALQSLEGRyRQELKDLQEQQREEKSQW 888
Cdd:COG1196 274 LELEELELELEEAQAEEYELLAEL------------------------ARLEQDIARLEER-RRELEERLEELEEELAEL 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 889 EFEKDELTQECAEAQELLKETLKREKTTSLVLTQEREMLEKtykehLNSMVVERQQLLQDLEDLRNVSETQQSLLSDQIL 968
Cdd:COG1196 329 EEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLE-----AEAELAEAEEELEELAEELLEALRAAAELAAQLE 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 969 ELKSSHKRELREREEVLcQAGASEQLASQRLERLEMEHDQERQEMMSKLLAMENIHKATCETADRERAEMSTEISRLQSK 1048
Cdd:COG1196 404 ELEEAEEALLERLERLE-EELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAEL 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1049 IKEMQQATSPLSMLQsgcQVIGEEEVEGDGALSLLQQGEQ-LLEENGDVLLSLQRAHEQAVKE--NVKMATEISRLQQRL 1125
Cdd:COG1196 483 LEELAEAAARLLLLL---EAEADYEGFLEGVKAALLLAGLrGLAGAVAVLIGVEAAYEAALEAalAAALQNIVVEDDEVA 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1126 QKLEPGLVMSsclDEPATEFFGNTAEQTEQFLQQNRTKQVEGVTRRHVLSDLEDDEVRDLGSTGTSSVQRQEVKIEESEA 1205
Cdd:COG1196 560 AAAIEYLKAA---KAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAAL 636
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1206 SVEgfSELENSEETRTESWELKNQISQLQEQlmmlcadcdRASEKKQDLLFDVSVLKKKLKMLERipeaspKYKLLYEDV 1285
Cdd:COG1196 637 RRA--VTLAGRLREVTLEGEGGSAGGSLTGG---------SRRELLAALLEAEAELEELAERLAE------EELELEEAL 699
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1286 SRENDCLQEELRMMETRYDEALENNKELTAEVFRLQDELKKMEEVTETFLSLEKSYDEVKIENEGLNVLVLRLQGKIEKL 1365
Cdd:COG1196 700 LAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
726-1667 |
2.50e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 69.32 E-value: 2.50e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 726 RHEEEKKQLQVKLEEEKTHLQeklrlqhemelkaRLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQFhqeQLTSLVe 805
Cdd:TIGR02168 169 KYKERRKETERKLERTRENLD-------------RLEDILNELERQLKSLERQAEKAERYKELKAELREL---ELALLV- 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 806 khtlekeeLRKELLEKHQRELQEGREKMETECNRRTSQIEAqfqsdCQKVTERCESALQSLEGRYRQELKDLQEQQREek 885
Cdd:TIGR02168 232 --------LRLEELREELEELQEELKEAEEELEELTAELQE-----LEEKLEELRLEVSELEEEIEELQKELYALANE-- 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 886 sqwefeKDELTQECAEAQELLKETLKREKTTSLVLTQEREMLEKtYKEHLNSMVVERQQLLQDLEDLRN----------V 955
Cdd:TIGR02168 297 ------ISRLEQQKQILRERLANLERQLEELEAQLEELESKLDE-LAEELAELEEKLEELKEELESLEAeleeleaeleE 369
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 956 SETQQSLLSDQILELKSshkrELREREEVLCQAGASEQLASQRLERLEMEHDQERQEMMSKLLAMenihkatcetadrER 1035
Cdd:TIGR02168 370 LESRLEELEEQLETLRS----KVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKL-------------EE 432
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1036 AEMSTEISRLQSKIKEMQQATSPLSMLQSGCQVIGEEEVEGDGALSLLQQGEQLLEENGDVLLSLQRAHE---QAVKENV 1112
Cdd:TIGR02168 433 AELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEgfsEGVKALL 512
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1113 KMATEISRLQQRLQKL---EPG------LVMSSCLDEPATEFFgNTAEQTEQFLQQNRTKQVegvtrrhvlSDLEDDEVR 1183
Cdd:TIGR02168 513 KNQSGLSGILGVLSELisvDEGyeaaieAALGGRLQAVVVENL-NAAKKAIAFLKQNELGRV---------TFLPLDSIK 582
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1184 DLGSTGTSsvqrqevkiEESEASVEGFSELENSEETRTEswELKNQISQLQEQLMMlCADCDRASEkkqdllfdvsvLKK 1263
Cdd:TIGR02168 583 GTEIQGND---------REILKNIEGFLGVAKDLVKFDP--KLRKALSYLLGGVLV-VDDLDNALE-----------LAK 639
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1264 KLKMLERI-----PEASPKYKLLYEDVSRENDCL--QEELRMMETRYDEALENNKELTAEVFRLQDELKKMEEVTETfls 1336
Cdd:TIGR02168 640 KLRPGYRIvtldgDLVRPGGVITGGSAKTNSSILerRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQ--- 716
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1337 LEKSYDEVKIENEGLNVLVLRLQGKIEKLQESVVQRcdcclwEASLENLEIEPDGNILQLNQTLEEcvprvrsvhhvIEE 1416
Cdd:TIGR02168 717 LRKELEELSRQISALRKDLARLEAEVEQLEERIAQL------SKELTELEAEIEELEERLEEAEEE-----------LAE 779
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1417 CKQENQYLEgntqllekvkaheiawlhGTIQTHQERprvqnqvILEENTTLLGFQDKHFQHQATIAELELEKTKLQELTR 1496
Cdd:TIGR02168 780 AEAEIEELE------------------AQIEQLKEE-------LKALREALDELRAELTLLNEEAANLRERLESLERRIA 834
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1497 KLKERVTILVKQKDVLShgEKEEELKAMMHDLQITCSEMQQKVELLRYESEKLQQENSILRNEITTLNEEDSISNLKLGT 1576
Cdd:TIGR02168 835 ATERRLEDLEEQIEELS--EDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSE 912
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1577 LNGSQEEMWQKTETVKQENAAVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQN-QEKLQELNQRLTEMlcqkekep 1655
Cdd:TIGR02168 913 LRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEaRRRLKRLENKIKEL-------- 984
|
970
....*....|....*
gi 1370465130 1656 GN---SALEEREQEK 1667
Cdd:TIGR02168 985 GPvnlAAIEEYEELK 999
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
374-953 |
4.21e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 68.42 E-value: 4.21e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 374 LALENELLVTKNSIHQAALASFKAEIRHLLERVDQVVREKEKLRSDLDKAEKLKSLMASEVDDHHAAIERRN--EYNLRK 451
Cdd:COG1196 216 RELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQaeEYELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 452 LDEEYKERIAALKnELRKEREQILQQAGKQRLELEQEIEKAKTEENYIRDRLALSLKENSRLENELLENAEKLAEYENLT 531
Cdd:COG1196 296 ELARLEQDIARLE-ERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAEL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 532 NKLQRNLENVLAEKFGDLDpssaefflQEERLTQMRNEYERQCRVLQDQVDELQSELEEYRAQGRVLRLPLKNSPSEEVE 611
Cdd:COG1196 375 AEAEEELEELAEELLEALR--------AAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEE 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 612 ANSGgiepEHGLGSEECNPLNMSIEAELVIEQMKEQHHRdiccLRLELEDKVRHYEKQLdetvvsckkaQENMKQRHENE 691
Cdd:COG1196 447 AAEE----EAELEEEEEALLELLAELLEEAALLEAALAE----LLEELAEAAARLLLLL----------EAEADYEGFLE 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 692 THTLEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQVKLEEEKTHLQEKLRLQhemeLKARLTQAQASFERE 771
Cdd:COG1196 509 GVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAA----KAGRATFLPLDKIRA 584
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 772 REGLQSSAWTEEKVRG-------LTQELEQFHQEQLTSLVEKHTLEKEELRKELLEKHQRELQEGREKMETEcNRRTSQI 844
Cdd:COG1196 585 RAALAAALARGAIGAAvdlvasdLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGG-SAGGSLT 663
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 845 EAQFQSDCQKVTERCESALQSLEGRYRQELKDLQEQQREEksqwefEKDELTQECAEAQELLKETLKREKTTSLVLTQER 924
Cdd:COG1196 664 GGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEE------EEERELAEAEEERLEEELEEEALEEQLEAEREEL 737
|
570 580
....*....|....*....|....*....
gi 1370465130 925 EMLEKTYKEHLNSMVVERQQLLQDLEDLR 953
Cdd:COG1196 738 LEELLEEEELLEEEALEELPEPPDLEELE 766
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
434-1270 |
5.62e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.08 E-value: 5.62e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 434 VDDHHAAIERrneyNLRKLDEEYK--ERIAALKNELRKEREQIL----QQAGKQRLELEQEIEKAKTEENYIRDRLALSL 507
Cdd:TIGR02168 191 LEDILNELER----QLKSLERQAEkaERYKELKAELRELELALLvlrlEELREELEELQEELKEAEEELEELTAELQELE 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 508 KENSRLENELLENAEKLAEYE---NLTNKLQRNLEN---VLAEKFGDLDPSSAEFFLQEERLTQMRNEYERQCRVLQDQV 581
Cdd:TIGR02168 267 EKLEELRLEVSELEEEIEELQkelYALANEISRLEQqkqILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKL 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 582 DELQSELEEYRAQgrvlrlpLKNSPSEEVEANSGGIEPEHGLGSEEcnplnmsiEAELVIEQMKEQHHRDICCLRLELED 661
Cdd:TIGR02168 347 EELKEELESLEAE-------LEELEAELEELESRLEELEEQLETLR--------SKVAQLELQIASLNNEIERLEARLER 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 662 KVRHYEKQLDETvvsckkaQENMKQRHENETHTLEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQVKLEEE 741
Cdd:TIGR02168 412 LEDRRERLQQEI-------EELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAEREL 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 742 KTHLQEKLRLQHEMELKARLTQAQASFERERE---GLQSSAWTEEKVR-GLTQELEQFHQEQLTSLVEKhTLEKEELRKE 817
Cdd:TIGR02168 485 AQLQARLDSLERLQENLEGFSEGVKALLKNQSglsGILGVLSELISVDeGYEAAIEAALGGRLQAVVVE-NLNAAKKAIA 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 818 LLEKHQR--------ELQEGREKMETECNRRTSQ-IEAQFQSDCQKVTERCESALQSLEGRYRqelkdlqeqqreeksqw 888
Cdd:TIGR02168 564 FLKQNELgrvtflplDSIKGTEIQGNDREILKNIeGFLGVAKDLVKFDPKLRKALSYLLGGVL----------------- 626
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 889 efekdeLTQECAEAQELLKETLKREkttsLVLTQEREMLEKTY-----KEHLNSMVVERQQLLQDLEDLRNVSETQQSLL 963
Cdd:TIGR02168 627 ------VVDDLDNALELAKKLRPGY----RIVTLDGDLVRPGGvitggSAKTNSSILERRREIEELEEKIEELEEKIAEL 696
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 964 SDQILELKSshkrELREREEVLCQAGASEQLASQRLERLEMEHDQERQEMMSKLLAMENIHKATCEtADRERAEMSTEIS 1043
Cdd:TIGR02168 697 EKALAELRK----ELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTE-LEAEIEELEERLE 771
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1044 RLQSKIKE----MQQATSPLSMLQSGCQVIGEEEVEGDGALSLLQQGEQLLEEngdVLLSLQRAHEQAVKENVKMATEIS 1119
Cdd:TIGR02168 772 EAEEELAEaeaeIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRE---RLESLERRIAATERRLEDLEEQIE 848
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1120 RLQQRLQKLEPGLvmsscldEPATEFFGNTAEQTEQFLQQNRTKQVEGVTRRHVLSDLEDDevrdlgstgtssVQRQEVK 1199
Cdd:TIGR02168 849 ELSEDIESLAAEI-------EELEELIEELESELEALLNERASLEEALALLRSELEELSEE------------LRELESK 909
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1370465130 1200 IEESEASVEGFSELENSEETRTEswELKNQISQLQEQLMMLCAD-CDRASEKKQDLLFDVSVLKKKLKMLER 1270
Cdd:TIGR02168 910 RSELRRELEELREKLAQLELRLE--GLEVRIDNLQERLSEEYSLtLEEAEALENKIEDDEEEARRRLKRLEN 979
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
384-1130 |
9.91e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.84 E-value: 9.91e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 384 KNSIHQAALASFKAEIRHLLERVDQVVREKEKLRSDLDKAEKLKSLMASEVDDHHAAI-ERRNEYN-LRKLDEEYKERIA 461
Cdd:TIGR02168 219 KAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVsELEEEIEeLQKELYALANEIS 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 462 ALKNELRKEREQiLQQAGKQRLELEQEIEKAKTEenyiRDRLALSLKENSRLENELLENAEKLAEYENLTNKLQRNLENV 541
Cdd:TIGR02168 299 RLEQQKQILRER-LANLERQLEELEAQLEELESK----LDELAEELAELEEKLEELKEELESLEAELEELEAELEELESR 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 542 LAEKFGDLDPSSAEFFLQEERLTQMRNEYERqcrvLQDQVDELQSELEEYRAQGRVLRLPLKNSPSEEVEANSGGIEPEh 621
Cdd:TIGR02168 374 LEELEEQLETLRSKVAQLELQIASLNNEIER----LEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEE- 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 622 glgseecnpLNMSIEAELVIEQMKEQHHRDICCLRLELeDKVRHYEKQLDETVVSCKKAQENMKQRHENETHTLEKQ--- 698
Cdd:TIGR02168 449 ---------LEELQEELERLEEALEELREELEEAEQAL-DAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQsgl 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 699 ------ISDL------------------------KNEIAELQGQAAVLKEAHHEAT-----------------CRHEEEK 731
Cdd:TIGR02168 519 sgilgvLSELisvdegyeaaieaalggrlqavvvENLNAAKKAIAFLKQNELGRVTflpldsikgteiqgndrEILKNIE 598
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 732 KQLQVKLEEEKTH-------------------LQEKLRLQHEMELKARLTQAQASFEReREGLQS--SAWTEEKVRGLTQ 790
Cdd:TIGR02168 599 GFLGVAKDLVKFDpklrkalsyllggvlvvddLDNALELAKKLRPGYRIVTLDGDLVR-PGGVITggSAKTNSSILERRR 677
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 791 ELeqfhqEQLTSLVEKHTLEKEELRKEL--LEKHQRELQEGREKMETECNRRTSQIEAQfqsdcQKVTERCESALQSLEG 868
Cdd:TIGR02168 678 EI-----EELEEKIEELEEKIAELEKALaeLRKELEELEEELEQLRKELEELSRQISAL-----RKDLARLEAEVEQLEE 747
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 869 RYRQELKDLQEQQREEKSQWEfEKDELTQECAEAQELLKETLKREKTTSLVLTQEREMLEKTYKEhLNSMVVERQQLLQD 948
Cdd:TIGR02168 748 RIAQLSKELTELEAEIEELEE-RLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAE-LTLLNEEAANLRER 825
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 949 LEDLRNvsetQQSLLSDQILELKSSHKRELREREEvlcqagASEQLASQR--LERLEMEHDQERQEMMSKLLAMENIHKA 1026
Cdd:TIGR02168 826 LESLER----RIAATERRLEDLEEQIEELSEDIES------LAAEIEELEelIEELESELEALLNERASLEEALALLRSE 895
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1027 TcETADRERAEMSTEISRLQSKIKEMQQATSPLSMLQSGCQVigeeevegdgalSLLQQGEQLLEENGDVLLSLQRAHEQ 1106
Cdd:TIGR02168 896 L-EELSEELRELESKRSELRRELEELREKLAQLELRLEGLEV------------RIDNLQERLSEEYSLTLEEAEALENK 962
|
810 820
....*....|....*....|....
gi 1370465130 1107 AVKENVKMATEISRLQQRLQKLEP 1130
Cdd:TIGR02168 963 IEDDEEEARRRLKRLENKIKELGP 986
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
431-1016 |
1.29e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 60.54 E-value: 1.29e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 431 ASEVDDHHAAIERRNEYNLRKLdEEYKERIAALKNELRKEREQILQQAGKQRLELEQEIEKAKTEE------NYIRDRLA 504
Cdd:PTZ00121 1175 AKKAEAARKAEEVRKAEELRKA-EDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAeeakkaEEERNNEE 1253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 505 LSLKENSRLENELLENAEKLAEYENLTNKLQRNLENVLAEKFGDLDP-SSAEFFLQEERLTQMRNEYERQCRVLQDQVDE 583
Cdd:PTZ00121 1254 IRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEkKKADEAKKKAEEAKKADEAKKKAEEAKKKADA 1333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 584 LQSELEEYRAQGRVLRLPLKNSpSEEVEANSGGIEPEHGLGSEEcnplnmSIEAELVIEQMKEQHHRDicclrlELEDKV 663
Cdd:PTZ00121 1334 AKKKAEEAKKAAEAAKAEAEAA-ADEAEAAEEKAEAAEKKKEEA------KKKADAAKKKAEEKKKAD------EAKKKA 1400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 664 RHYEKQLDETvvscKKAQENMKQRHENETHTLEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQVKLEEEKT 743
Cdd:PTZ00121 1401 EEDKKKADEL----KKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAK 1476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 744 HLQEKLRLQHEMELKARLTQAQAsfererEGLQSSAWTEEKVRGLTQELEQFHQEQLTSLVEKHtlEKEELRKELLEKHQ 823
Cdd:PTZ00121 1477 KKAEEAKKADEAKKKAEEAKKKA------DEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAK--KADEAKKAEEKKKA 1548
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 824 RELQEGREKMETECNRRTSQIEAQfQSDCQKVTERCESALQSLEGRYRQELKDLQEQQREEKSQWEFEKDELTQecaeAQ 903
Cdd:PTZ00121 1549 DELKKAEELKKAEEKKKAEEAKKA-EEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIK----AE 1623
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 904 ELLKETLKREKTTSLVLTQEREM--LEKTYKEHLNSMVVERQQLLQDLEDLRNVSETQQSLLSDQILELKSSHKRELRER 981
Cdd:PTZ00121 1624 ELKKAEEEKKKVEQLKKKEAEEKkkAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKK 1703
|
570 580 590
....*....|....*....|....*....|....*
gi 1370465130 982 EEVLCQAGASEQLASQRLERLEMEHDQERQEMMSK 1016
Cdd:PTZ00121 1704 AEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKE 1738
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1462-2125 |
1.41e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.46 E-value: 1.41e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1462 EENTTLLGFQDKHFQHQATIAELELEKTKLQELTRKLKERVTILVKQKDVLShgEKEEELKAMMHDLQITCSEMQQKVEL 1541
Cdd:TIGR02168 257 ELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILR--ERLANLERQLEELEAQLEELESKLDE 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1542 LRYESEKLQQENSILRNEITTLNEEDSISNLKLGTLNGSQEEMWQKTETVKQENAAVQKMVENLKKQISELKIKNQQLDL 1621
Cdd:TIGR02168 335 LAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLED 414
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1622 ENTELSQKNSQNQEKLQELNQRLTEMLCQkEKEPGNSALEEREQEKFNLKEELERCKVQSSTLVSSLEAELSEVKIQTHI 1701
Cdd:TIGR02168 415 RRERLQQEIEELLKKLEEAELKELQAELE-ELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDS 493
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1702 VQ--QENHLLKDELEKMKQLHRcPDLSDFQQKISSVLSYNEKLLKEKE-ALSEELNSCVD------KLAKSSLLEHRI-- 1770
Cdd:TIGR02168 494 LErlQENLEGFSEGVKALLKNQ-SGLSGILGVLSELISVDEGYEAAIEaALGGRLQAVVVenlnaaKKAIAFLKQNELgr 572
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1771 ATMKQEQKSWEHQSASLKSQLVASQEKVQ----NLEDTVQNVNLQMSRMKSDLRVTQQEKEALKQEVMSLHKQ-LQNAGG 1845
Cdd:TIGR02168 573 VTFLPLDSIKGTEIQGNDREILKNIEGFLgvakDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGYrIVTLDG 652
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1846 KSWAPEIATHPSGLHNQQKRLSWDKldhlmneEQQLLWQENERLQTMVQNTKAELTHSREKVRQLESNLLPKHQKHLNPS 1925
Cdd:TIGR02168 653 DLVRPGGVITGGSAKTNSSILERRR-------EIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELS 725
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1926 GTMNPTEQEKLSLKRECDQFQKEQSPANRKVS----QMNSLEQELETIHLENEGLKKKQVKLDEQLMEMQHLRSTATPSP 2001
Cdd:TIGR02168 726 RQISALRKDLARLEAEVEQLEERIAQLSKELTeleaEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREAL 805
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 2002 SPHAWDLQLL------QQQACPMVPREQFLQLQRQLLQAERI--NQHLQEELENRTSETNTPQGNQEQLVTVMEERMIEV 2073
Cdd:TIGR02168 806 DELRAELTLLneeaanLRERLESLERRIAATERRLEDLEEQIeeLSEDIESLAAEIEELEELIEELESELEALLNERASL 885
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|..
gi 1370465130 2074 EQKLKLVKRLLQEKVNQLKEQLCKNTKADAMVKDLYVENAQLLKALEVTEQR 2125
Cdd:TIGR02168 886 EEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVR 937
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1476-1847 |
1.52e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 60.03 E-value: 1.52e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1476 QHQATIAELELEKTKLQELTRKLKE---RVTILVKQKDVLSHGEKEEELKAMMHDLQITCSEMQQKVELLryesEKLQQE 1552
Cdd:TIGR04523 268 QLSEKQKELEQNNKKIKELEKQLNQlksEISDLNNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKII----SQLNEQ 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1553 NSILRNEITTLNEEDSisnlklgTLNGSQEEMWQKTETVKQENAAVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQ 1632
Cdd:TIGR04523 344 ISQLKKELTNSESENS-------EKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKK 416
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1633 NQEKLQELNQRLTEMLCQKEKEPGN-SALEEREQEKFNLKEELERCKVQSSTLVSSLEAELSEVKIQTHIVQQENHLLKD 1711
Cdd:TIGR04523 417 LQQEKELLEKEIERLKETIIKNNSEiKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEK 496
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1712 ELEKMKQLHRCPD--LSDFQQKISSVLSYNEKLLKEKEALSEELNSCVDKLAK------SSLLE-------HRIATMKQE 1776
Cdd:TIGR04523 497 ELKKLNEEKKELEekVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKddfelkKENLEkeideknKEIEELKQT 576
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1777 QKS--------------WEHQSASLKSQLVASQEKVQNLEDTVQNVNLQMSRMKSDLRVTQQEKEALKQEVMSLHKQLQN 1842
Cdd:TIGR04523 577 QKSlkkkqeekqelidqKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKE 656
|
....*
gi 1370465130 1843 AGGKS 1847
Cdd:TIGR04523 657 IRNKW 661
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
389-985 |
2.13e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 59.70 E-value: 2.13e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 389 QAALASFKAEIRHLLERVDQVVREKEKLRSDLDKAEKLKSLMASEVDDHHAAIERRNEyNLRKLDEEYKERIAALkNELR 468
Cdd:TIGR02169 293 KEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERK-RRDKLTEEYAELKEEL-EDLR 370
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 469 KEREQILQQAGKQRLEL---EQEIEKAKTEENYIRDRLALSLKENSRLENELLENAEKLAEYENLTNKLQRNLENV---L 542
Cdd:TIGR02169 371 AELEEVDKEFAETRDELkdyREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKaleI 450
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 543 AEKFGDLDPSSAEFFLQEERLTQMRNEYERqcrvLQDQVDELQSELEEYRAQGRVL--RLPLKNSPSEEVEANSGGI--- 617
Cdd:TIGR02169 451 KKQEWKLEQLAADLSKYEQELYDLKEEYDR----VEKELSKLQRELAEAEAQARASeeRVRGGRAVEEVLKASIQGVhgt 526
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 618 -------EPEHGLGSEEC--NPL-NMSIEAELV----IEQMKE---------------QHHRDICCLRL----------- 657
Cdd:TIGR02169 527 vaqlgsvGERYATAIEVAagNRLnNVVVEDDAVakeaIELLKRrkagratflplnkmrDERRDLSILSEdgvigfavdlv 606
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 658 ELEDKVRHYEKQ-LDETVV-----------------------------------------SCKKAQENMKQRHENETHTL 695
Cdd:TIGR02169 607 EFDPKYEPAFKYvFGDTLVvedieaarrlmgkyrmvtlegelfeksgamtggsraprggiLFSRSEPAELQRLRERLEGL 686
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 696 EKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQV------KLEEEKTHLQEKLR-LQHEME--------LKAR 760
Cdd:TIGR02169 687 KRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQleqeeeKLKERLEELEEDLSsLEQEIEnvkselkeLEAR 766
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 761 LTQAQASFEREREGLQS-------SAWteEKVRGLTQELEQFHQEQLTSLVE-KHTLEKEELRKELLEKHQRELQEGREK 832
Cdd:TIGR02169 767 IEELEEDLHKLEEALNDlearlshSRI--PEIQAELSKLEEEVSRIEARLREiEQKLNRLTLEKEYLEKEIQELQEQRID 844
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 833 METECNRRTSQIEA--QFQSDCQKVTERCESALQSLEGRyrqeLKDLQEQQREEKSQWEFEKDELtQECAEAQELLKETL 910
Cdd:TIGR02169 845 LKEQIKSIEKEIENlnGKKEELEEELEELEAALRDLESR----LGDLKKERDELEAQLRELERKI-EELEAQIEKKRKRL 919
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 911 KREKTTSLVLTQEREMLEKTYK------------EHLNSMVVERQQLLQDLEDLRNVSETQQSLLSDQILELKSSHKREL 978
Cdd:TIGR02169 920 SELKAKLEALEEELSEIEDPKGedeeipeeelslEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLE 999
|
....*..
gi 1370465130 979 REREEVL 985
Cdd:TIGR02169 1000 EERKAIL 1006
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
645-1367 |
3.89e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.91 E-value: 3.89e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 645 KEQHHRDICCLRL-ELEDKVRHYEKQLDETVVSCKKAQENMKqrhenethTLEKQISDLKNEIAELQGQAAVLKEAHHEA 723
Cdd:TIGR02168 222 LRELELALLVLRLeELREELEELQEELKEAEEELEELTAELQ--------ELEEKLEELRLEVSELEEEIEELQKELYAL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 724 tcrheeekKQLQVKLEEEKTHLQEKLRlqhemelkaRLTQAQASFEREREGLQSSAW-TEEKVRGLTQELEQFhQEQLTS 802
Cdd:TIGR02168 294 --------ANEISRLEQQKQILRERLA---------NLERQLEELEAQLEELESKLDeLAEELAELEEKLEEL-KEELES 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 803 LVEKhtLEKEELRKELLEKHQRELQEGREKMETECNRRTSQIE---AQFQSDCQKVtERCESALQSLEGRYRQELKDLQE 879
Cdd:TIGR02168 356 LEAE--LEELEAELEELESRLEELEEQLETLRSKVAQLELQIAslnNEIERLEARL-ERLEDRRERLQQEIEELLKKLEE 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 880 QQREEKSQWEFEKDELTQECAEAQELLKETLKREKTTSLVLTQEREMLEKTYKEH---LNSMVVERQQLLQDLEDLRNV- 955
Cdd:TIGR02168 433 AELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLqarLDSLERLQENLEGFSEGVKALl 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 956 -SETQQSLLSDQILELKSSHKRELREREEVLcqAGASEQLASQRLE--RLEMEHDQERQEMMSKLLAMENIHKATCETAD 1032
Cdd:TIGR02168 513 kNQSGLSGILGVLSELISVDEGYEAAIEAAL--GGRLQAVVVENLNaaKKAIAFLKQNELGRVTFLPLDSIKGTEIQGND 590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1033 RERAE-MSTEISRLQSKIKEMQQATSPLSMLQSGCQVIgEEEVEGDGALSLLQQGEQLLEENGDVLL---SLQRAHEQAV 1108
Cdd:TIGR02168 591 REILKnIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVV-DDLDNALELAKKLRPGYRIVTLDGDLVRpggVITGGSAKTN 669
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1109 KENVKMATEISRLQQRLQKLEpglvmsscldepateffgNTAEQTEQFLQQNRTKQVEGVTRRHVLSDLEDDEVRDLgst 1188
Cdd:TIGR02168 670 SSILERRREIEELEEKIEELE------------------EKIAELEKALAELRKELEELEEELEQLRKELEELSRQI--- 728
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1189 gtsSVQRQEVKIEESEASvegfSELENSEETRTESWELKNQISQLQEQLMMLCADCDRASEKKQDLLFDVSVLKKKLKML 1268
Cdd:TIGR02168 729 ---SALRKDLARLEAEVE----QLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKAL 801
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1269 -ERIPEASPKYKLL---YEDVSRENDCLQEELRMMETRYDEALENNKELTAEVFRLQDELKKMEEVTETFLS-LEKSYDE 1343
Cdd:TIGR02168 802 rEALDELRAELTLLneeAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESeLEALLNE 881
|
730 740
....*....|....*....|....
gi 1370465130 1344 VKIENEGLNVLVLRLQGKIEKLQE 1367
Cdd:TIGR02168 882 RASLEEALALLRSELEELSEELRE 905
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1031-1842 |
4.34e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.91 E-value: 4.34e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1031 ADRERAEMSTEISRLQSKIKEMQQATSPLSMLQSGCQVIGEEevegdgalslLQQGEQLLEENGDVLLSLQRAHEQAVKE 1110
Cdd:TIGR02168 220 AELRELELALLVLRLEELREELEELQEELKEAEEELEELTAE----------LQELEEKLEELRLEVSELEEEIEELQKE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1111 NVKMATEISRLQQRLQKLEPGLvmsscldepatEFFGNTAEQTEQFLQQNRTKQVEGVTRrhvLSDLEDDEVRDLGSTgT 1190
Cdd:TIGR02168 290 LYALANEISRLEQQKQILRERL-----------ANLERQLEELEAQLEELESKLDELAEE---LAELEEKLEELKEEL-E 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1191 SSVQRQEVKIEESEASVEGFSEL-ENSEETRTESWELKNQISQLQEQLMMLCADCDRASEKKQDLLFDVSVLKKKLKM-- 1267
Cdd:TIGR02168 355 SLEAELEELEAELEELESRLEELeEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEae 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1268 LERIPEASPKYKLLYEDVSRENDCLQEELRMMETRYDEALENNKELTAEVFRLQDELKKMEEVTETFLSLEKSYDEVKIE 1347
Cdd:TIGR02168 435 LKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKN 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1348 NEGLNVLVLRLQGKIEKLQEsvvqrcdcclWEASLENLEIEPDGNILqlnqtleecvprvrsvhhvieeCKQENQYLEGn 1427
Cdd:TIGR02168 515 QSGLSGILGVLSELISVDEG----------YEAAIEAALGGRLQAVV----------------------VENLNAAKKA- 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1428 TQLLEKVKAHEIAWLHGTIQTHQErPRVQNQVILEENTTLLGFQDKHFQhqatiAELELEK---------------TKLQ 1492
Cdd:TIGR02168 562 IAFLKQNELGRVTFLPLDSIKGTE-IQGNDREILKNIEGFLGVAKDLVK-----FDPKLRKalsyllggvlvvddlDNAL 635
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1493 ELTRKLKERVTILVKQKDVLSHG---------------EKEEELKammhDLQITCSEMQQKVELLRYESEKLQQENSILR 1557
Cdd:TIGR02168 636 ELAKKLRPGYRIVTLDGDLVRPGgvitggsaktnssilERRREIE----ELEEKIEELEEKIAELEKALAELRKELEELE 711
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1558 NEITTLNEEDSISNLKLGTLNGSQEEMWQKTETVKQENAAVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQNQEKL 1637
Cdd:TIGR02168 712 EELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQI 791
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1638 QELNQRLTEmlcqkekepGNSALEEREQEKFNLKEELErckvQSSTLVSSLEAELSEVKIQTHIVQQENHLLKDELEKMK 1717
Cdd:TIGR02168 792 EQLKEELKA---------LREALDELRAELTLLNEEAA----NLRERLESLERRIAATERRLEDLEEQIEELSEDIESLA 858
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1718 QLHRcpDLSDFQQKISSVLsynEKLLKEKEALSEELNSCVDKLAKsslLEHRIATMKQEQKSWEHQSASLKSQLVASQEK 1797
Cdd:TIGR02168 859 AEIE--ELEELIEELESEL---EALLNERASLEEALALLRSELEE---LSEELRELESKRSELRRELEELREKLAQLELR 930
|
810 820 830 840
....*....|....*....|....*....|....*....|....*
gi 1370465130 1798 VQNLEDTVQNVNlqmSRMKSDLRVTQQEKEALKQEVMSLHKQLQN 1842
Cdd:TIGR02168 931 LEGLEVRIDNLQ---ERLSEEYSLTLEEAEALENKIEDDEEEARR 972
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1195-1847 |
7.54e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 57.82 E-value: 7.54e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1195 RQEVKIEESEASVEGFSELENSeeTRTESWELKNQISQLQEQL-----MMLCadcdraseKKQDLLFDVSVLKKKLKMLE 1269
Cdd:pfam15921 268 RIEQLISEHEVEITGLTEKASS--ARSQANSIQSQLEIIQEQArnqnsMYMR--------QLSDLESTVSQLRSELREAK 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1270 RipeaspkyklLYEDVSREndcLQEELRMMETRYDEALENNKELTAEVFRLQDELKKMeevtetFLSLEKSYDEVKIENE 1349
Cdd:pfam15921 338 R----------MYEDKIEE---LEKQLVLANSELTEARTERDQFSQESGNLDDQLQKL------LADLHKREKELSLEKE 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1350 GLNVLVLRLQGK---IEKLQESVVQR-CDCCLWEASLENLEIEPDGNilqlnqtLEECVPRVRSVHHVIEECKQENQYLE 1425
Cdd:pfam15921 399 QNKRLWDRDTGNsitIDHLRRELDDRnMEVQRLEALLKAMKSECQGQ-------MERQMAAIQGKNESLEKVSSLTAQLE 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1426 GNTQLLEKVkAHEIAWLHGTIQTHQerprvqnQVILEENTTLlgfQDKHFQHQATIAELElektklqeltrKLKERVTIL 1505
Cdd:pfam15921 472 STKEMLRKV-VEELTAKKMTLESSE-------RTVSDLTASL---QEKERAIEATNAEIT-----------KLRSRVDLK 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1506 VKQkdvLSHGEKEEElkaMMHDLQITCsemqqkvELLRYESEKLQQENSILRNEITTLNEEDSISNLKLGTLNGSQEEMW 1585
Cdd:pfam15921 530 LQE---LQHLKNEGD---HLRNVQTEC-------EALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLE 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1586 QKTETVKQENAAVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQNQEKLQELNQRLTEML--CQKEKEPGNSALEER 1663
Cdd:pfam15921 597 KEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLneVKTSRNELNSLSEDY 676
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1664 EQEKFNLKEELERCKVQSSTLVSSLEAELSEVKIQTHIVQQ----ENHLLKDELEKMKQL-HRCPDLSDFQQKISSVLSY 1738
Cdd:pfam15921 677 EVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSmegsDGHAMKVAMGMQKQItAKRGQIDALQSKIQFLEEA 756
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1739 NEKLLKEKEALSEELNScvdklaksslLEHRIATMKQEQKSWEHQSASLKSQLVASQEKVQNLEDTVQNVNLQMSRMKSD 1818
Cdd:pfam15921 757 MTNANKEKHFLKEEKNK----------LSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQDI 826
|
650 660
....*....|....*....|....*....
gi 1370465130 1819 LRVTQQEKEALKQEVMSLHKQLQNAGGKS 1847
Cdd:pfam15921 827 IQRQEQESVRLKLQHTLDVKELQGPGYTS 855
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
404-1001 |
1.15e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 57.46 E-value: 1.15e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 404 ERVDQVVREKEKLRSDLDKAEKLKSlmasEVDDHHAAIERRNEYNLRKLDEEYKEriaalKNELRKEREQILQQAG--KQ 481
Cdd:PTZ00121 1342 KKAAEAAKAEAEAAADEAEAAEEKA----EAAEKKKEEAKKKADAAKKKAEEKKK-----ADEAKKKAEEDKKKADelKK 1412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 482 RLELEQEIEKAKTEENYIRDRLALSLK-ENSRLENELLENAEKLAEYENLTNKLQRnlenvlAEKFGDLDPSSAEfflqe 560
Cdd:PTZ00121 1413 AAAAKKKADEAKKKAEEKKKADEAKKKaEEAKKADEAKKKAEEAKKAEEAKKKAEE------AKKADEAKKKAEE----- 1481
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 561 erlTQMRNEYERQCRVLQDQVDELQSElEEYRAQGRVLRLPLKNSPSEEVEANSGGIEPEHGLGSEECNPLNMSIEAElv 640
Cdd:PTZ00121 1482 ---AKKADEAKKKAEEAKKKADEAKKA-AEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAE-- 1555
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 641 iEQMKEQHHRDICCLRLELEDKVRHYEKQLDETVVSCKKAQENMKQRHENETHTLE--KQISDLKNEIAELQGQAAVLKE 718
Cdd:PTZ00121 1556 -ELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEeaKKAEEAKIKAEELKKAEEEKKK 1634
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 719 AHHEATCRHEEEKKQLQVKLEEEKTHLQEKLRLQHEMELKARLTQAQASFEREREGLQSSAWTEEKVRGLtqeleqfhqE 798
Cdd:PTZ00121 1635 VEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKA---------E 1705
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 799 QLTSLVEKHTLEKEELRKellEKHQRELQEGREKMETECNRRTSQIEAQFQSDCQKVTERCESALQSLEGRYRQELKDLQ 878
Cdd:PTZ00121 1706 ELKKKEAEEKKKAEELKK---AEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIE 1782
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 879 EQQREEKSQWEFEKDELTQECAEAQELLKETlkrEKTTSLVLTQEREMLEKTYKEHL---NSMVVERQQLLQDLEDLRNV 955
Cdd:PTZ00121 1783 EELDEEDEKRRMEVDKKIKDIFDNFANIIEG---GKEGNLVINDSKEMEDSAIKEVAdskNMQLEEADAFEKHKFNKNNE 1859
|
570 580 590 600
....*....|....*....|....*....|....*....|....*.
gi 1370465130 956 SETQQSLLSDQilelkSSHKRELREREEVLCQAGASEQLASQRLER 1001
Cdd:PTZ00121 1860 NGEDGNKEADF-----NKEKDLKEDDEEEIEEADEIEKIDKDDIER 1900
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
636-973 |
2.10e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 56.61 E-value: 2.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 636 EAELVIEQMKEQHHRdiccLRLELEDKVRhYEKQLDETVVSCKKAQENMKQRHENETHTLEKQISDLKNEIAELQGQAAV 715
Cdd:TIGR02169 188 RLDLIIDEKRQQLER----LRREREKAER-YQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISE 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 716 LKEAHHEATCRHEEEKKQLQVKLEEEKTHLQEKLrlqHEMELK-ARLTQAQASFEREREGLQS-SAWTEEKVRGLTQELE 793
Cdd:TIGR02169 263 LEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKI---GELEAEiASLERSIAEKERELEDAEErLAKLEAEIDKLLAEIE 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 794 QFHQEQLTSLVEKHTLEKE-ELRKELLEKHQRELQEgrekmETECNRRTSQIEAQFQSDCQKVTERCESaLQSLEGRYRQ 872
Cdd:TIGR02169 340 ELEREIEEERKRRDKLTEEyAELKEELEDLRAELEE-----VDKEFAETRDELKDYREKLEKLKREINE-LKRELDRLQE 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 873 ELKDLQEQQREEKSQWEFEKDELTQECAEAQELLKETLKRE---KTTSLVLTQEREMLEKTYKEH--LNSMVVERQQLLQ 947
Cdd:TIGR02169 414 ELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEwklEQLAADLSKYEQELYDLKEEYdrVEKELSKLQRELA 493
|
330 340
....*....|....*....|....*.
gi 1370465130 948 DLEDLRNVSETQQSLLSDQILELKSS 973
Cdd:TIGR02169 494 EAEAQARASEERVRGGRAVEEVLKAS 519
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
726-1025 |
2.91e-07 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 55.90 E-value: 2.91e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 726 RHEEEKKQLQVKLEEEKTHLQEKLRLQHEMELKARLTQAQASFEREREGLQSSAWTEEKVRgltqELEQFHQEQLTSLVE 805
Cdd:pfam17380 300 RLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRQEERKR----ELERIRQEEIAMEIS 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 806 KhTLEKEELRKELLEKHQR---ELQEGREK--METECNRRTSQIEAQFQSDCQKVTERCESALQSLEGRYRQELKDLQEQ 880
Cdd:pfam17380 376 R-MRELERLQMERQQKNERvrqELEAARKVkiLEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLE 454
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 881 QREEKSQWEfekdELTQECAEAQELLKETLKREKTTSLVLTQEREMLEKTYKEHLNSMVVE---RQQLLQDLEDLRN-VS 956
Cdd:pfam17380 455 EQERQQQVE----RLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEerkRKLLEKEMEERQKaIY 530
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1370465130 957 ETQQSllsdQILELKSSHKRELREREEVlcqagaSEQLASQRLERLEMEHDQERQEMMSKLLAMENIHK 1025
Cdd:pfam17380 531 EEERR----REAEEERRKQQEMEERRRI------QEQMRKATEERSRLEAMEREREMMRQIVESEKARA 589
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
390-1130 |
3.98e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.46 E-value: 3.98e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 390 AALASFKAEIRHLLERVDQVVREKEKLRSDLDkaEKLKSLMASEVDDHHAaiERRNEYNLRKLDEEYKERIAAlKNELRK 469
Cdd:TIGR02169 163 AGVAEFDRKKEKALEELEEVEENIERLDLIID--EKRQQLERLRREREKA--ERYQALLKEKREYEGYELLKE-KEALER 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 470 EREQILqqagKQRLELEQEIEKAKTEENYIRDRLA--------LSLKENSRLENELLENAEKLAEYENLTNKLQRNLEnV 541
Cdd:TIGR02169 238 QKEAIE----RQLASLEEELEKLTEEISELEKRLEeieqlleeLNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIA-E 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 542 LAEKFGDLDPSSAEFFLQEERLTQMRNEYERQCRVLQDQVDELQSELEEYRAQGRVLRLPLknspsEEVEANSGGIEPEH 621
Cdd:TIGR02169 313 KERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAEL-----EEVDKEFAETRDEL 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 622 --------GLGsEECNPLNMSIEAELVIEQMKEQHHRDICCLRLELEDKVRHYEKQLDETVVSCKKAQENMKQ------- 686
Cdd:TIGR02169 388 kdyrekleKLK-REINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQlaadlsk 466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 687 ------RHENETHTLEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQ--VKLEEEKTHLQEKLRLQHEMELK 758
Cdd:TIGR02169 467 yeqelyDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQgvHGTVAQLGSVGERYATAIEVAAG 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 759 ARLTQ---------------------AQASF----EREREGLQSSAWTEEKVRGLTQELEQFHQE---------QLTSLV 804
Cdd:TIGR02169 547 NRLNNvvveddavakeaiellkrrkaGRATFlplnKMRDERRDLSILSEDGVIGFAVDLVEFDPKyepafkyvfGDTLVV 626
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 805 EKHTLEKEELRK--------ELLEK-----------------------HQRELQEGREKMETECNRRTSQIEAQFQ---- 849
Cdd:TIGR02169 627 EDIEAARRLMGKyrmvtlegELFEKsgamtggsraprggilfsrsepaELQRLRERLEGLKRELSSLQSELRRIENrlde 706
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 850 -----SDCQKVTERCESALQSLEGRyrqelkdlQEQQREEKSQWEFEKDELTQECAEAQELLKETLKREKTTSLVLTQER 924
Cdd:TIGR02169 707 lsqelSDASRKIGEIEKEIEQLEQE--------EEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLE 778
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 925 EMLEKTYKEHLNSMVVERQQLLQDLEDLRnvsETQQSLLSDQILELKSSHKRELREREEVLCQAGASEQLASQRLERLEM 1004
Cdd:TIGR02169 779 EALNDLEARLSHSRIPEIQAELSKLEEEV---SRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKE 855
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1005 EHDQERQemMSKLLAMENIHKATCETADRERAEMSTEISRLQSKIKEMQQAtsplsmlqsgcqvIGEEEVEGDGA---LS 1081
Cdd:TIGR02169 856 IENLNGK--KEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERK-------------IEELEAQIEKKrkrLS 920
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|..
gi 1370465130 1082 LLQQGEQLLEENGDVLLSLQRAHEQAVKENV---KMATEISRLQQRLQKLEP 1130
Cdd:TIGR02169 921 ELKAKLEALEEELSEIEDPKGEDEEIPEEELsleDVQAELQRVEEEIRALEP 972
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
520-1125 |
4.18e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 55.51 E-value: 4.18e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 520 NAEKLAEYENLTNKLQRNLENVLAEKFGDLDPS----SAEFFLQEERLTQMRNEYERQCRVL----QDQVDELQSElEEY 591
Cdd:pfam15921 200 SGKKIYEHDSMSTMHFRSLGSAISKILRELDTEisylKGRIFPVEDQLEALKSESQNKIELLlqqhQDRIEQLISE-HEV 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 592 RAQGRVLRLPLKNSPSEEVEANSGGIEPEhglgSEECNPLNMSIEAELviEQMKEQHHRDICCLRLELEDKVRHYEKQL- 670
Cdd:pfam15921 279 EITGLTEKASSARSQANSIQSQLEIIQEQ----ARNQNSMYMRQLSDL--ESTVSQLRSELREAKRMYEDKIEELEKQLv 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 671 --DETVVSCKKAQENMKQRHENETHTLEKQISDLKNEIAEL-----QGQAAVLKEAHHEATCRHeeekkqLQVKLEEEKT 743
Cdd:pfam15921 353 laNSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELslekeQNKRLWDRDTGNSITIDH------LRRELDDRNM 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 744 HLQeklRLqhEMELKARLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQfhqeqltslvekhtlekeelRKELLEKHQ 823
Cdd:pfam15921 427 EVQ---RL--EALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLES--------------------TKEMLRKVV 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 824 RELQEgrEKMETECNRRT-SQIEAQFQSDcQKVTERCESALQSLEGRYRQELKDLQEQQREEksqwefekDELTQECAEA 902
Cdd:pfam15921 482 EELTA--KKMTLESSERTvSDLTASLQEK-ERAIEATNAEITKLRSRVDLKLQELQHLKNEG--------DHLRNVQTEC 550
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 903 QELLKETLKREKTTSlVLTQEREMLEKTYKEH---LNSMVVERQQLLQDLEDlRNVSETQQSLLSDQilelKSSHKRELR 979
Cdd:pfam15921 551 EALKLQMAEKDKVIE-ILRQQIENMTQLVGQHgrtAGAMQVEKAQLEKEIND-RRLELQEFKILKDK----KDAKIRELE 624
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 980 ER------EEVLCQAGASEQLASQRleRLEMEHDQERQEMMSKLLAMENIHKATcETADRERAEMSTEISRLQSKIKeMQ 1053
Cdd:pfam15921 625 ARvsdlelEKVKLVNAGSERLRAVK--DIKQERDQLLNEVKTSRNELNSLSEDY-EVLKRNFRNKSEEMETTTNKLK-MQ 700
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1370465130 1054 QATSPLSMLQSGCQVIGEEEVEGDGALSLLQQGEQLLEENG--DVLLS----LQRAHEQAVKENVKMATEISRLQQRL 1125
Cdd:pfam15921 701 LKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGqiDALQSkiqfLEEAMTNANKEKHFLKEEKNKLSQEL 778
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
400-983 |
8.41e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 54.54 E-value: 8.41e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 400 RHLLERVDQVVREKEKLRSDLDKAEKLKSLMAS-----EVDDHHAAIERRNEyNLRKLDEEY---KERIAALKNELRKER 471
Cdd:COG4913 251 IELLEPIRELAERYAAARERLAELEYLRAALRLwfaqrRLELLEAELEELRA-ELARLEAELerlEARLDALREELDELE 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 472 EQILQQAGKQRLELEQEIEKAKTEENYIRDRLALSLKENSRLENELLENAEKLAEyenltnkLQRNLENVLAEkfgdldp 551
Cdd:COG4913 330 AQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAA-------LRAEAAALLEA------- 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 552 SSAEFFLQEERLTQMRNEYERqcrvLQDQVDELQSELEEYRAQGrvlrlplKNSPSEEVEANSggiEPEHGLGSEEcnpL 631
Cdd:COG4913 396 LEEELEALEEALAEAEAALRD----LRRELRELEAEIASLERRK-------SNIPARLLALRD---ALAEALGLDE---A 458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 632 NMSIEAELVieQMKEQH-------------HRdiccLRL----ELEDKVRHY------EKQLDETVVSCKKAQENMKQRH 688
Cdd:COG4913 459 ELPFVGELI--EVRPEEerwrgaiervlggFA----LTLlvppEHYAAALRWvnrlhlRGRLVYERVRTGLPDPERPRLD 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 689 ENE-THTLEKQISDLKNEI-AELQGQAAVLKEAHHEA-----------------TCRHE--------------------- 728
Cdd:COG4913 533 PDSlAGKLDFKPHPFRAWLeAELGRRFDYVCVDSPEElrrhpraitragqvkgnGTRHEkddrrrirsryvlgfdnrakl 612
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 729 EEKKQLQVKLEEEKTHLQEKLRlqhemELKARLTQAQASFEREReGLQSSAWTEEKVRGLTQELEQfHQEQLTSLvEKHT 808
Cdd:COG4913 613 AALEAELAELEEELAEAEERLE-----ALEAELDALQERREALQ-RLAEYSWDEIDVASAEREIAE-LEAELERL-DASS 684
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 809 LEKEELRKElLEKHQRELQEGREKMEtECNRRTSQIEAQFQsDCQKVTERCESALQSLEGRYRQELKDLQEQQREEKSQW 888
Cdd:COG4913 685 DDLAALEEQ-LEELEAELEELEEELD-ELKGEIGRLEKELE-QAEEELDELQDRLEAAEDLARLELRALLEERFAAALGD 761
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 889 EFEKdeltqecaEAQELLKETLKREKTTslvLTQEREMLEKTYKEHLNSMVVERQQLLQDLEDLRNVSETQQSLLSDQIL 968
Cdd:COG4913 762 AVER--------ELRENLEERIDALRAR---LNRAEEELERAMRAFNREWPAETADLDADLESLPEYLALLDRLEEDGLP 830
|
650
....*....|....*
gi 1370465130 969 ELKSSHKRELREREE 983
Cdd:COG4913 831 EYEERFKELLNENSI 845
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
448-984 |
8.44e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 54.30 E-value: 8.44e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 448 NLRKLDEEYKERIAALKNELRKErEQILQQAGkqrlELEQEIEKAKTEENYIRDRLALSLKENSRLENELlenaEKLAEY 527
Cdd:PRK03918 166 NLGEVIKEIKRRIERLEKFIKRT-ENIEELIK----EKEKELEEVLREINEISSELPELREELEKLEKEV----KELEEL 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 528 ENLTNKLQRNLENVLAEKFGdldpssaefflQEERLTQ---MRNEYERQCRVLQDQVDELQsELEEYRAQGRVLRLPLKN 604
Cdd:PRK03918 237 KEEIEELEKELESLEGSKRK-----------LEEKIREleeRIEELKKEIEELEEKVKELK-ELKEKAEEYIKLSEFYEE 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 605 SPSEEVEansggIEPEHGLGSEECNplnmSIEAELVIEQMKEQHHRDICCLRLELEDKVRHYEK--QLDETVVSCKKAQE 682
Cdd:PRK03918 305 YLDELRE-----IEKRLSRLEEEIN----GIEERIKELEEKEERLEELKKKLKELEKRLEELEErhELYEEAKAKKEELE 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 683 NMKQRHENET---------------HTLEKQISDLKNEIAELQGQAAVLKEAHHE--------ATCRH---EEEKKQLQV 736
Cdd:PRK03918 376 RLKKRLTGLTpeklekeleelekakEEIEEEISKITARIGELKKEIKELKKAIEElkkakgkcPVCGReltEEHRKELLE 455
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 737 K-------LEEEKTHLQEKLRlqhemELKARLTQAQASFEREREgLQSSAWTEEKVRGLTQELEQFHQEQLTSLVEKHTL 809
Cdd:PRK03918 456 EytaelkrIEKELKEIEEKER-----KLRKELRELEKVLKKESE-LIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEK 529
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 810 EKEEL---------------RKELLEKHQRELQEGREKMEtecnRRTSQIEAQFQSDCQKVTERCESALQSLEGRYRQ-- 872
Cdd:PRK03918 530 LKEKLiklkgeikslkkeleKLEELKKKLAELEKKLDELE----EELAELLKELEELGFESVEELEERLKELEPFYNEyl 605
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 873 ELKDLQEQQREEKSQWEFEKDELTQECAEAQELLKETLK-REKTTSLVLTQEREMLEKTYKEHLnSMVVERQQLLQDLED 951
Cdd:PRK03918 606 ELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEElRKELEELEKKYSEEEYEELREEYL-ELSRELAGLRAELEE 684
|
570 580 590
....*....|....*....|....*....|...
gi 1370465130 952 LRNVSETQQSLLSDQilelksshKRELREREEV 984
Cdd:PRK03918 685 LEKRREEIKKTLEKL--------KEELEEREKA 709
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
391-835 |
9.82e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 54.28 E-value: 9.82e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 391 ALASFKAEIRHLLERVDQVVREKEKLRSDLDKAEKLKSLMASEVDDHHAAIERRNEYNLR-----KLDEEYKERIAALKN 465
Cdd:PRK02224 238 EADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDllaeaGLDDADAEAVEARRE 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 466 ELRKEREQILQQAGKQRL---ELEQEIEKAKTEENYIRDRLALSLKENSRLENELLENAEKLAEYENLTNKLQRNLENvL 542
Cdd:PRK02224 318 ELEDRDEELRDRLEECRVaaqAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEE-L 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 543 AEKFGDL--DPSSAEFFLQE-----ERLTQMRNEYERQCRVLQDQVDELQSELEE---------YRAQGRVLRLPLKNSP 606
Cdd:PRK02224 397 RERFGDApvDLGNAEDFLEElreerDELREREAELEATLRTARERVEEAEALLEAgkcpecgqpVEGSPHVETIEEDRER 476
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 607 SEEVEANSGGIEPEHGLGSEECNPLNMSIEAELVIEQMKE----------QHHRDICCLRLELEDKVRHYEKQLDETVVS 676
Cdd:PRK02224 477 VEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEErredleeliaERRETIEEKRERAEELRERAAELEAEAEEK 556
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 677 CKKAQENMK--QRHENETHTLEKQISDLKNEIAELQGQAAVLK--EAHHEATCRHEEEKKQLQVKLEEEKTHLQEKLRLQ 752
Cdd:PRK02224 557 REAAAEAEEeaEEAREEVAELNSKLAELKERIESLERIRTLLAaiADAEDEIERLREKREALAELNDERRERLAEKRERK 636
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 753 HEMELK---ARLTQAQASFEREREGLQSsawTEEKVRGLTQELEQFHQEqlTSLVEKHTLEKEELRKELlekhqRELQEG 829
Cdd:PRK02224 637 RELEAEfdeARIEEAREDKERAEEYLEQ---VEEKLDELREERDDLQAE--IGAVENELEELEELRERR-----EALENR 706
|
....*.
gi 1370465130 830 REKMET 835
Cdd:PRK02224 707 VEALEA 712
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
412-928 |
1.19e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 54.38 E-value: 1.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 412 EKEKLRSDLDKAEKLKSLMASEVDDHHAAIERRNEYNLRKLdEEYKERIAALKNELRKEREQILQQAGKQRL--ELEQEI 489
Cdd:PTZ00121 1246 EEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKA-EEKKKADEAKKAEEKKKADEAKKKAEEAKKadEAKKKA 1324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 490 EKAKTEENYIRDRLALSLKENSRLENELLENAEKLAEYENLTNKLQRNLENvlAEKFGDLDPSSAEFFLQEERLTQMRNE 569
Cdd:PTZ00121 1325 EEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEE--AKKKADAAKKKAEEKKKADEAKKKAEE 1402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 570 YERQCRVL------QDQVDELQSELEEYRAQGRvlrlpLKNSPSEEVEANSGGIEPEHGLGSEECN-PLNMSIEAELVIE 642
Cdd:PTZ00121 1403 DKKKADELkkaaaaKKKADEAKKKAEEKKKADE-----AKKKAEEAKKADEAKKKAEEAKKAEEAKkKAEEAKKADEAKK 1477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 643 QMKEQHHRDicclrlELEDKVRHYEKQLDETvvscKKAQENMKQRHENETHTLEKQISDLKNeiAELQGQAAVLKEAhhE 722
Cdd:PTZ00121 1478 KAEEAKKAD------EAKKKAEEAKKKADEA----KKAAEAKKKADEAKKAEEAKKADEAKK--AEEAKKADEAKKA--E 1543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 723 ATCRHEEEKKQLQVKLEEEKTHLQEKLRLQHEMEL------------KARLTQAQASFEREREGLQSSAWTEEKVRGLTQ 790
Cdd:PTZ00121 1544 EKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMalrkaeeakkaeEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAE 1623
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 791 EL-----EQFHQEQLTSLVEKHTLEKEELRKELLEKHQRELQEGR----EKMETECNRRTSQIEAQFQSDCQKVTERCES 861
Cdd:PTZ00121 1624 ELkkaeeEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKkaeeDKKKAEEAKKAEEDEKKAAEALKKEAEEAKK 1703
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1370465130 862 A--LQSLEGRYRQELKDLQEQQREEKSQWEFEKDELTQECAEAQELLKETLKREKTTSLVLTQEREMLE 928
Cdd:PTZ00121 1704 AeeLKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEE 1772
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
802-1654 |
1.29e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 53.82 E-value: 1.29e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 802 SLVEKHTLEKEELRKELLEKHQRELQEGREKMETECNRRTSQIEAQFQSDCQKVTERCESALQSL-----EGRYRQELKD 876
Cdd:pfam02463 162 AAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLlyldyLKLNEERIDL 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 877 LQEQQREEKSQWEFEKDELTQECAEAQELLKEtlKREKTTSLVLTQEREMLEKTYKEHLNSMVVERQQLLQDLEDLRNVS 956
Cdd:pfam02463 242 LQELLRDEQEEIESSKQEIEKEEEKLAQVLKE--NKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKES 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 957 ETQQSLLSDQILELKSSHKRELREREEVLCQAGASEQLASQRLERLEMEHDQERQEMMSKLLAMENIhkatcETADRERA 1036
Cdd:pfam02463 320 EKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERL-----SSAAKLKE 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1037 EMSTEISRLQSKIKEMQQATSPLSMLQSGCQVIGEEEVEGDGALSLLQQGEQLLEENGDVLLSL---------------- 1100
Cdd:pfam02463 395 EELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELkllkdelelkksedll 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1101 QRAHEQAVKENVKMATEISRLQQRLQKLEPGLVMSSCLDEPATEFFGNTAEQTEQFLQQNRTkQVEGVTRRHVLSDLEDD 1180
Cdd:pfam02463 475 KETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGV-AVENYKVAISTAVIVEV 553
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1181 EVRDLGSTGTSSVQRQEVKIEESEASVEGFSELENSEETRTESWELKNQISQLQEQLMMLCADCDRASEKKQDLLFDVSV 1260
Cdd:pfam02463 554 SATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTE 633
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1261 LKKKLKMLERIPEASPKYKLLYEDVSRENDCLQEELRMMETRYDEALENNK---ELTAEVFRLQDELKKMEEVTETFLSL 1337
Cdd:pfam02463 634 LTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKaesELAKEEILRRQLEIKKKEQREKEELK 713
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1338 EKSYDEVKIENEGLNvLVLRLQGKIEKLQESVVQRCDCCLWEASLENLEIEPDGNILQLNQTLEECVPRVRSVHHVIEEc 1417
Cdd:pfam02463 714 KLKLEAEELLADRVQ-EAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEE- 791
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1418 kQENQYLEGNTQLLEKVKAHEIAWLHG-TIQTHQERPRVQNQVILEENTTLLGFQDKHFQHQATIAELELEKTKLQELTR 1496
Cdd:pfam02463 792 -KEEKLKAQEEELRALEEELKEEAELLeEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQ 870
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1497 KLKERVTILVKQKDVLSHGEKEEELKAMMHDLQitcsEMQQKVELLRYESEKLQQENSILRNEITTLNEEDSISnlkLGT 1576
Cdd:pfam02463 871 ELLLKEEELEEQKLKDELESKEEKEKEEKKELE----EESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEEL---LLE 943
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1370465130 1577 LNGSQEEMWQKTETVKQENAAVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMLCQKEKE 1654
Cdd:pfam02463 944 EADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQRLKE 1021
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1482-2153 |
1.37e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.91 E-value: 1.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1482 AELELEKT-----KLQELTRKLKERVTILVKQKDVlshGEKEEELKAMMHDLQITCS-----EMQQKVELLRYESEKLQQ 1551
Cdd:TIGR02168 177 TERKLERTrenldRLEDILNELERQLKSLERQAEK---AERYKELKAELRELELALLvlrleELREELEELQEELKEAEE 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1552 ENSILRNEITTLNEEDSISNLKLGTLNGSQEEMWQKTETVKQENAAVQKMVENLKKQISELKIKNQQLDLENTELSQKNS 1631
Cdd:TIGR02168 254 ELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLD 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1632 QNQEKLQELNQRLTEMlcQKEKEPGNSALEEREQEKFNLKEELERCKVQSSTLVSSL-EAELSEVKIQTHIVQQENHL-- 1708
Cdd:TIGR02168 334 ELAEELAELEEKLEEL--KEELESLEAELEELEAELEELESRLEELEEQLETLRSKVaQLELQIASLNNEIERLEARLer 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1709 LKDELEKMKQLHRCPDLSDFQQKISSVLSYNEKLLKEKEALSEELNSCVDKLAKSSLLEHRIATMKQEQKSWEHQSASLK 1788
Cdd:TIGR02168 412 LEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARL 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1789 SQLVASQEKVQNLEDTVQNVNLQMSRMK------SDLRVTQQEKEALKQEVMSLHkqLQNAGGKSWAPEIATHPSGLHNQ 1862
Cdd:TIGR02168 492 DSLERLQENLEGFSEGVKALLKNQSGLSgilgvlSELISVDEGYEAAIEAALGGR--LQAVVVENLNAAKKAIAFLKQNE 569
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1863 QKRLSWDKLDHLMNEEQQLLWQENERLQTMVQNTKAELTHSREKVRQLESNLLPK-----------HQKHLNPSGTMNPT 1931
Cdd:TIGR02168 570 LGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGvlvvddldnalELAKKLRPGYRIVT 649
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1932 EQEKLSLKRECDQF---QKEQSPANRKvSQMNSLEQELETIHLENEGLKKKQVKLDEQLMEMQHLRSTAtpspsphawDL 2008
Cdd:TIGR02168 650 LDGDLVRPGGVITGgsaKTNSSILERR-REIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQL---------RK 719
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 2009 QLLQQQACPMVPREQFLQLQRQLLQAERINQHLQEELENRTSETNTPQGNQEQLvtvmEERMIEVEQKLKLvkrlLQEKV 2088
Cdd:TIGR02168 720 ELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEA----EEELAEAEAEIEE----LEAQI 791
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1370465130 2089 NQLKEQLCKNTKA----DAMVKDLYVENAQLLKALEVTEQRQKTAEKKNYLLEEKIASLSNIVRNLTPA 2153
Cdd:TIGR02168 792 EQLKEELKALREAldelRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAE 860
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1538-1987 |
1.37e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 53.49 E-value: 1.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1538 KVELLRYESEKLQQENSI--LRNEITTLNEEDSISNLKLGTLNGSQEEMWQKTETVKQENAAVQKMVENLKKQISELKI- 1614
Cdd:TIGR04523 123 EVELNKLEKQKKENKKNIdkFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELl 202
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1615 ---------KNQQLDLENTELSQKNSQNQEKLQELNQRLTEMlcqkekepgNSALEEREQEKFNLKEELERCK------- 1678
Cdd:TIGR04523 203 lsnlkkkiqKNKSLESQISELKKQNNQLKDNIEKKQQEINEK---------TTEISNTQTQLNQLKDEQNKIKkqlsekq 273
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1679 ---VQSSTLVSSLEAELSEVKIQTHIVQQE-----NHLLKDELEKMKQLHRC--PDLSDFQQKISSVLSYNEKLLKEKEA 1748
Cdd:TIGR04523 274 kelEQNNKKIKELEKQLNQLKSEISDLNNQkeqdwNKELKSELKNQEKKLEEiqNQISQNNKIISQLNEQISQLKKELTN 353
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1749 LSEELNSCVDKLAKSsllEHRIATMKQEQKSWEHQSASLKSQLVASQEKVQNLEDTVQNVNLQMSRMKSDLRVTQQEKEA 1828
Cdd:TIGR04523 354 SESENSEKQRELEEK---QNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIER 430
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1829 LKQEVMSLHKQLQNAGGKSWAPEIATHPSGLHNQQKRLSWDKLDHLMNEEQQLLWQENERLQTMVQ---NTKAELTHSRE 1905
Cdd:TIGR04523 431 LKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKelkKLNEEKKELEE 510
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1906 KVRQLESNLLPKHQKHLNPSGTMNPTEQEKLSLKRECDQFQKEQSPANRKvSQMNSLEQELETIHLENEGLKKKQVKLDE 1985
Cdd:TIGR04523 511 KVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLE-KEIDEKNKEIEELKQTQKSLKKKQEEKQE 589
|
..
gi 1370465130 1986 QL 1987
Cdd:TIGR04523 590 LI 591
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1476-1721 |
1.56e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.79 E-value: 1.56e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1476 QHQATIAELELEKTKLQELTRKLKErvtilvKQKDVLSHGEKEEELKAMMHDLQITCSEMQQKVELLRYESEKLQQENSI 1555
Cdd:COG1196 219 KEELKELEAELLLLKLRELEAELEE------LEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYE 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1556 LRNEITTLNEEDSISNLKLGTLNGSQEEM-WQKTETVKQENAAVQKMVENLKKQIS---ELKIKNQQLDLENTELSQKNS 1631
Cdd:COG1196 293 LLAELARLEQDIARLEERRRELEERLEELeEELAELEEELEELEEELEELEEELEEaeeELEEAEAELAEAEEALLEAEA 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1632 QNQEKLQELNQRLTEML-CQKEKEPGNSALEEREQEKFNLKEELERCKVQSSTLVSSLEAELSEVKIQTHIVQQENHLLK 1710
Cdd:COG1196 373 ELAEAEEELEELAEELLeALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEA 452
|
250
....*....|.
gi 1370465130 1711 DELEKMKQLHR 1721
Cdd:COG1196 453 ELEEEEEALLE 463
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
472-1367 |
1.88e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 53.44 E-value: 1.88e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 472 EQILQQAGKQRLELEQEI-----EKAKTEENYIRDRLALSLKENSRLENELLENAEKLAEYENLTNKLQRNLENVLAEKf 546
Cdd:pfam02463 145 EIIAMMKPERRLEIEEEAagsrlKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEE- 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 547 gdldpssaefflQEERLTQMRNEYERQCRVLQDQVDELQSELEEYRAqgrvlRLPLKNSPSEEVEANSGGIEPEHGLGSE 626
Cdd:pfam02463 224 ------------EYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQ-----EIEKEEEKLAQVLKENKEEEKEKKLQEE 286
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 627 ECNPLnMSIEAELVIEQMKEQHHRDICCLRLELEDKVRHYEKQLDETVVSCKKAQENMKQRHENETHTLEKQISDLKNEI 706
Cdd:pfam02463 287 ELKLL-AKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQ 365
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 707 AELQGQAAVLKEAHHEATCRHEEEKKQLQVKLEEEKTHLQE-KLRLQHEMELKARLTQAQASFEREREGLQSSAWTEEkv 785
Cdd:pfam02463 366 EKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEaQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQ-- 443
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 786 rgLTQELEQFHQEQLTSLVEKHTLEKEELRKELLEKHQRELQEGREKMETECNRRTSQIEAQFQSDCQKVTERCESALQS 865
Cdd:pfam02463 444 --GKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVG 521
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 866 LEGRY-RQELKDLQEQQREEKSQWEFEKDELTQECAEAQELLKETLKREKTTSLVLTQEREMLEKTYKEHLNSMVVERQQ 944
Cdd:pfam02463 522 GRIISaHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDP 601
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 945 LLQDLEDLRNVSETQQSLLSDQILELKSSHKRELREREEVLCQAGASEQLASQRLERLEMEHDQERQEMMSKLLAMENIh 1024
Cdd:pfam02463 602 ILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQE- 680
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1025 katcETADRERAEMSTEISRLQSKIKEMQQAtsplsmlqsgcqvigEEEVEGDGALSLLQQGEQLLEENGDVLLSLQRAH 1104
Cdd:pfam02463 681 ----LQEKAESELAKEEILRRQLEIKKKEQR---------------EKEELKKLKLEAEELLADRVQEAQDKINEELKLL 741
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1105 EQAVKENVKMATEISRLQQRLQKLEPGLVMSSCLDEPATEFFGNTAEQTEQFLQQNRTKQVEGVTRRHVLSDLEDDEVRD 1184
Cdd:pfam02463 742 KQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQ 821
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1185 LGSTGTSSVQRQEVKIEESEASVEGFSELENSEETRTESWELKNQISQLQEQLMMLCADCDRASEKKQD-LLFDVSVLKK 1263
Cdd:pfam02463 822 LLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESkEEKEKEEKKE 901
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1264 KLKMLERIPEASPKYKLLYEDVSRENDCLQEELRMMET-----RYDEALENNKELTAEVFRLQDELKKMEEVTETFLSLE 1338
Cdd:pfam02463 902 LEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEEllleeADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIE 981
|
890 900
....*....|....*....|....*....
gi 1370465130 1339 KSYDEVKIENEGLNVLVLRLQGKIEKLQE 1367
Cdd:pfam02463 982 EFEEKEERYNKDELEKERLEEEKKKLIRA 1010
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
929-1674 |
2.07e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.14 E-value: 2.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 929 KTYKEHLNSmvVERQQLLQDLEDLRNVSETQQSLLSDQILELKSsHKRELREREEvlcqagaseQLASQRLERLEMEHDQ 1008
Cdd:TIGR02168 216 KELKAELRE--LELALLVLRLEELREELEELQEELKEAEEELEE-LTAELQELEE---------KLEELRLEVSELEEEI 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1009 ER--------QEMMSKLLAMENIHKATCETADRERAEMSTEISRLQSKIKEMQQAtspLSMLQsgcQVIGEEEVEGDGAL 1080
Cdd:TIGR02168 284 EElqkelyalANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEE---LAELE---EKLEELKEELESLE 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1081 SLLQQGEQLLEENGDVLLSLQRAHEQAVKENVKMATEISRLQQRLQKLEpglvmsscldepateffgntaEQTEQfLQQN 1160
Cdd:TIGR02168 358 AELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLE---------------------ARLER-LEDR 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1161 RTKQVEgvTRRHVLSDLEDDEVRDLGSTGTSSVQRQEVKIEESEASVEGFSELENS-EETRTESWELKNQISQLQEQLMM 1239
Cdd:TIGR02168 416 RERLQQ--EIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREElEEAEQALDAAERELAQLQARLDS 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1240 LCADCDRASEKKQDLLFdvsVLKKKLKMLERIPEAS------PKYKLLYEDVsrendcLQEELRMMETRYDEA------- 1306
Cdd:TIGR02168 494 LERLQENLEGFSEGVKA---LLKNQSGLSGILGVLSelisvdEGYEAAIEAA------LGGRLQAVVVENLNAakkaiaf 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1307 LENNKELTAEVFRL------------QDELKKMEEVTETFLSLEKSYDEVKIENEGL--NVLV-------LRLQGKIEKL 1365
Cdd:TIGR02168 565 LKQNELGRVTFLPLdsikgteiqgndREILKNIEGFLGVAKDLVKFDPKLRKALSYLlgGVLVvddldnaLELAKKLRPG 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1366 QESVVQRCDCCLWEASL-------ENLEIEPDGNILQLNQTLEECVPRVRSVHHVIEECKQENQYLEGNTQLLEKVKAH- 1437
Cdd:TIGR02168 645 YRIVTLDGDLVRPGGVItggsaktNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEEl 724
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1438 ---------EIAWLHGTIQTHQERPRVQNQVILEENTTLLGFQDKHFQHQATIAELELEKTKLQELTRKLKERVTILVKQ 1508
Cdd:TIGR02168 725 srqisalrkDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREA 804
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1509 KDvlshgekeeELKAMMHDLQITCSEMQQKVELLRYESEKLQQENSILRNEITTLNEEdsisnlkLGTLNGSQEEMWQKT 1588
Cdd:TIGR02168 805 LD---------ELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSED-------IESLAAEIEELEELI 868
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1589 ETVKQENAAVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMlcqkekepgNSALEEREQEKF 1668
Cdd:TIGR02168 869 EELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQL---------ELRLEGLEVRID 939
|
....*.
gi 1370465130 1669 NLKEEL 1674
Cdd:TIGR02168 940 NLQERL 945
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
695-918 |
2.84e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 52.71 E-value: 2.84e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 695 LEKQISDLKNEIAELQGQAAVLKEAHHEATcrHEEEKKQLQVKLEEekthLQEKLRlqhemELKARLTQAQASFEREREG 774
Cdd:COG3206 180 LEEQLPELRKELEEAEAALEEFRQKNGLVD--LSEEAKLLLQQLSE----LESQLA-----EARAELAEAEARLAALRAQ 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 775 LQSSAWTEEKVrgLTQELEQFHQEQLTSLvekhTLEKEELRKELLEKH------QRELQEGREKMETECNRRTSQIEAQF 848
Cdd:COG3206 249 LGSGPDALPEL--LQSPVIQQLRAQLAEL----EAELAELSARYTPNHpdvialRAQIAALRAQLQQEAQRILASLEAEL 322
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 849 QsdcqkVTERCESALQSLEGRYRQELKDLQEQQREEKsqwefekdELTQECAEAQELLKETLKREKTTSL 918
Cdd:COG3206 323 E-----ALQAREASLQAQLAQLEARLAELPELEAELR--------RLEREVEVARELYESLLQRLEEARL 379
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
398-592 |
8.75e-06 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 51.08 E-value: 8.75e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 398 EIRHLLERVDQVVREKEKLRSDLDKAEKLKSLMASEVDDHHAAIERRNEYNLRKLDEEYKE---RIAALKNELRKEREQI 474
Cdd:PRK05771 44 RLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKIEKEIKEleeEISELENEIKELEQEI 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 475 lqqagkQRLE----LEQEIEKAKTEENYIrdRLALSLKENSRLENELLENAEKLAEYENLTNKL------QRNLENVLAE 544
Cdd:PRK05771 124 ------ERLEpwgnFDLDLSLLLGFKYVS--VFVGTVPEDKLEELKLESDVENVEYISTDKGYVyvvvvvLKELSDEVEE 195
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1370465130 545 KFGDLDPSSAEFFlQEERLTQMRNEYERQCRVLQDQVDELQSELEEYR 592
Cdd:PRK05771 196 ELKKLGFERLELE-EEGTPSELIREIKEELEEIEKERESLLEELKELA 242
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
771-1626 |
1.12e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.84 E-value: 1.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 771 EREGLQSSAWTEEKVRGLTQELEQFHQEQLTSLVEKHTLEKEELRKEL--LEKHQRELQEGREKMETECNRRTSQIE--- 845
Cdd:TIGR02169 199 QLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLasLEEELEKLTEEISELEKRLEEIEQLLEeln 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 846 -----------AQFQSDCQKVT---ERCESALQSLEgryrQELKDLQEQQR---EEKSQWEFEKDELTQECAEAQ---EL 905
Cdd:TIGR02169 279 kkikdlgeeeqLRVKEKIGELEaeiASLERSIAEKE----RELEDAEERLAkleAEIDKLLAEIEELEREIEEERkrrDK 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 906 LKETLKREKTTSLVLTQEREMLEKTYKEhLNSMVVERQQLLQDLEDLRNVSETQQSLLSDQiLELKSSHKRELREREEVL 985
Cdd:TIGR02169 355 LTEEYAELKEELEDLRAELEEVDKEFAE-TRDELKDYREKLEKLKREINELKRELDRLQEE-LQRLSEELADLNAAIAGI 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 986 CQAGAseQLASQRLE-RLEMEHDQERQEMMSKLLamenihkatcETADRERAEMSTEISRLQSKIKEMQQAtspLSMLQS 1064
Cdd:TIGR02169 433 EAKIN--ELEEEKEDkALEIKKQEWKLEQLAADL----------SKYEQELYDLKEEYDRVEKELSKLQRE---LAEAEA 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1065 GCQVIGEEEVEGDGALSLLQQGEQ----LLEENGDVLLSLQRAHEQA---------VKENVKMATEISRLQQR------- 1124
Cdd:TIGR02169 498 QARASEERVRGGRAVEEVLKASIQgvhgTVAQLGSVGERYATAIEVAagnrlnnvvVEDDAVAKEAIELLKRRkagratf 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1125 --LQKLEPGLVMSSCLDEP-ATEFFGNTAEQTEQFlqQNRTKQVEGVTRrhVLSDLEddEVRDLGstGTSSVQRQEVKIE 1201
Cdd:TIGR02169 578 lpLNKMRDERRDLSILSEDgVIGFAVDLVEFDPKY--EPAFKYVFGDTL--VVEDIE--AARRLM--GKYRMVTLEGELF 649
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1202 ESEASVEGFSelenseetRTESWELKNQISQLQEQLMMlcadcdraSEKKQDLlfdvsvlkkklkmleripeaspkykll 1281
Cdd:TIGR02169 650 EKSGAMTGGS--------RAPRGGILFSRSEPAELQRL--------RERLEGL--------------------------- 686
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1282 yedvSRENDCLQEELRMMETRYDEALENNKELTAEVFRLQDELKKMEEVTETFL----SLEKSYDEVKIENEGLNVLVLR 1357
Cdd:TIGR02169 687 ----KRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKerleELEEDLSSLEQEIENVKSELKE 762
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1358 LQGKIEKLQESVVQrcdcclWEASLENLEIEPDGNIL-QLNQTLEECVPRVRSVHHVIEECKQENQYLEGNTQLLEKVKA 1436
Cdd:TIGR02169 763 LEARIEELEEDLHK------LEEALNDLEARLSHSRIpEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQ 836
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1437 HEiawlhgtiqthqerprvQNQVILeenttllgFQDKHFQHQATIAELELEKTKLQELTRKLKERVTILVKQKDVLShgE 1516
Cdd:TIGR02169 837 EL-----------------QEQRID--------LKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLK--K 889
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1517 KEEELKAMMHDLQITCSEMQQKVELLRYESEKLQQENSILRNEITTLN------EEDSISNLKLGTLNGSQEEMWQKTET 1590
Cdd:TIGR02169 890 ERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEdpkgedEEIPEEELSLEDVQAELQRVEEEIRA 969
|
890 900 910
....*....|....*....|....*....|....*.
gi 1370465130 1591 VKQENAAVQKMVENLKKQISELKIKNQQLDLENTEL 1626
Cdd:TIGR02169 970 LEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAI 1005
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
337-537 |
1.13e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 50.79 E-value: 1.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 337 VERILDTWQEEGIE-NSQEILKALDFsLDGNINLTELTL-ALENELLVTKNsihQAALASFKAEIRHLLERVDQVVREKE 414
Cdd:COG3206 154 ANALAEAYLEQNLElRREEARKALEF-LEEQLPELRKELeEAEAALEEFRQ---KNGLVDLSEEAKLLLQQLSELESQLA 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 415 KLRSDLDKAE----------KLKSLMASEVDDHHAAIERRNEYN-----LRKLDEEYKE---RIAALKNELRKEREQILQ 476
Cdd:COG3206 230 EARAELAEAEarlaalraqlGSGPDALPELLQSPVIQQLRAQLAeleaeLAELSARYTPnhpDVIALRAQIAALRAQLQQ 309
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1370465130 477 QAGKQRLELEQEIEKAKTEENYIRDRLAlslkensRLENELLENAEKLAEYENLTNKLQRN 537
Cdd:COG3206 310 EAQRILASLEAELEALQAREASLQAQLA-------QLEARLAELPELEAELRRLEREVEVA 363
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
434-820 |
1.47e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.45 E-value: 1.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 434 VDDHHAAIERRNEYNLRKLDEEYKERIAALKNELRKEREQILQQAG--KQRLELEQEIEKAKTEENYIRDRLALSLKENS 511
Cdd:TIGR02169 626 VEDIEAARRLMGKYRMVTLEGELFEKSGAMTGGSRAPRGGILFSRSepAELQRLRERLEGLKRELSSLQSELRRIENRLD 705
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 512 RLENELLENAEKLAEYENLTNKLQRNlENVLAEKFGDLdpssaEFFLQEerLTQMRNEYERQCRVLQDQVDELQSELEEY 591
Cdd:TIGR02169 706 ELSQELSDASRKIGEIEKEIEQLEQE-EEKLKERLEEL-----EEDLSS--LEQEIENVKSELKELEARIEELEEDLHKL 777
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 592 RAQGRVLRLPLKNSPSEEVEANSGGIEPEHGLGSEECNPLNMSIEAELVIEQMKEQHHRDICCLRLELEDKVRHYEKQLD 671
Cdd:TIGR02169 778 EEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIE 857
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 672 ETVVSCKKAQENMKqRHENETHTLE-------KQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQVKLEEEKTH 744
Cdd:TIGR02169 858 NLNGKKEELEEELE-ELEAALRDLEsrlgdlkKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEI 936
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1370465130 745 LQEKLRLQHEMELKARLTQAQASFEREREGLQSsawTEEKVRGLTQELEQFhQEQLTSLVEKH-TLEKEelRKELLE 820
Cdd:TIGR02169 937 EDPKGEDEEIPEEELSLEDVQAELQRVEEEIRA---LEPVNMLAIQEYEEV-LKRLDELKEKRaKLEEE--RKAILE 1007
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
345-985 |
1.72e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 50.36 E-value: 1.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 345 QEEGIENSQEILKALDFSLDGNINLTELTLALENELLVTKNSIHQAALAsfKAEIRHLLERVDQVVREKEKLRSDLDKAE 424
Cdd:pfam02463 276 EEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKK--KAEKELKKEKEEIEELEKELKELEIKREA 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 425 KLKSLMASEvddhhaAIERRNEYNLRKLDEEYKERIAALKNELRKEREQilqqagkqrLELEQEIEKAKTEENYIRDRLA 504
Cdd:pfam02463 354 EEEEEEELE------KLQEKLEQLEEELLAKKKLESERLSSAAKLKEEE---------LELKSEEEKEAQLLLELARQLE 418
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 505 LSLKENSRLENELLENAEKLAEYENLTNKLQRNLENVLAEKFGDLDPSSAEFFLQEERLTQMRNEYERQCRVLQDQVDEL 584
Cdd:pfam02463 419 DLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEER 498
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 585 QSELEEYRAQGRVLRLPLKNSPSEEVEANSGGIEpEHGLGSEECNPLNMSIEAELVIEQMKEQHHRDICCLRLELEDKVR 664
Cdd:pfam02463 499 SQKESKARSGLKVLLALIKDGVGGRIISAHGRLG-DLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGA 577
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 665 HYEKQLDETVVSCKK----------------------AQENMKQRHENETHTLEKQISDLKNEIAELQGQAAVLKEAHHE 722
Cdd:pfam02463 578 RKLRLLIPKLKLPLKsiavleidpilnlaqldkatleADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEG 657
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 723 ATCRHEEEKKQLQVKLEEEKTHLQEKLRLQHEMELKARLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQFHQEQLTS 802
Cdd:pfam02463 658 LAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEE 737
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 803 LVEKHTLEKEELRKELLEKHQRELQEGREKMETECNRRTSQIEAQFQSDCQ--KVTERCESALQSLEGRYRQELKDLQEQ 880
Cdd:pfam02463 738 LKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVeeEKEEKLKAQEEELRALEEELKEEAELL 817
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 881 QREEKSQWEFEKDELTQECAEAQELLKETLKREKTTSLVLTQEREMLEKTYKEHLNSMVVErqqLLQDLEDLRNVSETQQ 960
Cdd:pfam02463 818 EEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEE---LEEQKLKDELESKEEK 894
|
650 660
....*....|....*....|....*
gi 1370465130 961 SLLSDQILELKSSHKRELREREEVL 985
Cdd:pfam02463 895 EKEEKKELEEESQKLNLLEEKENEI 919
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
419-1012 |
2.78e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 49.75 E-value: 2.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 419 DLDKAEKLKSLMASEVDDHHAAIERRNEYNLRKLDEEYKeriaalKNELRKEREQILQQAGKQRLELEQEIEKAKTEENY 498
Cdd:PTZ00121 1078 DFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARK------AEEAKKKAEDARKAEEARKAEDARKAEEARKAEDA 1151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 499 IRDRLALSLKENSRLENELLENAEKLAEYENLTNKLQRNLENVLAEkfgDLDPSSAEFFLQEERLTQMRNEYERQCRVLQ 578
Cdd:PTZ00121 1152 KRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAE---DARKAEAARKAEEERKAEEARKAEDAKKAEA 1228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 579 -DQVDELQSELEEYRaqgrvlrlplknspSEEVEANSGGIEPEHGLGSEECNPLNMSIEAElviEQMKEQHHRDICCLRL 657
Cdd:PTZ00121 1229 vKKAEEAKKDAEEAK--------------KAEEERNNEEIRKFEEARMAHFARRQAAIKAE---EARKADELKKAEEKKK 1291
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 658 ELEDKVRHYEKQLDETVvscKKAQENMKQRHENETHTLEKQISDLKNEIAELQGQAAVLKEAHHEATCRH----EEEKKQ 733
Cdd:PTZ00121 1292 ADEAKKAEEKKKADEAK---KKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEaeaaEEKAEA 1368
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 734 LQVKLEEEKTHLQEKLRLQHEMELKARLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQFHQEQLTSLVEKHTLEKEE 813
Cdd:PTZ00121 1369 AEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADE 1448
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 814 LRKELLEKHQRE--LQEGREKMETECNRRTSQiEAQFQSDCQKVTErcESALQSLEGRYRQELKDLQEQQREEKSQWEFE 891
Cdd:PTZ00121 1449 AKKKAEEAKKAEeaKKKAEEAKKADEAKKKAE-EAKKADEAKKKAE--EAKKKADEAKKAAEAKKKADEAKKAEEAKKAD 1525
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 892 KDELTQECAEAQELLKETLKREKTTSLVLTQEREMLEKTYKEHLNSMVVERQQLLQDLEDLRNVSETQQSLLSDQILELK 971
Cdd:PTZ00121 1526 EAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEK 1605
|
570 580 590 600
....*....|....*....|....*....|....*....|.
gi 1370465130 972 SSHKRELREREEVLCQAgasEQLASQRLERLEMEHDQERQE 1012
Cdd:PTZ00121 1606 KMKAEEAKKAEEAKIKA---EELKKAEEEKKKVEQLKKKEA 1643
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
389-599 |
2.82e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.53 E-value: 2.82e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 389 QAALASFKAEIRHLLERVDQVVREKEKLRSDLDKAEKLKSLMAS---------EVDDHHAAIERRNEyNLRKLD------ 453
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRlaeyswdeiDVASAEREIAELEA-ELERLDassddl 687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 454 EEYKERIAALKNELRKEREQIlQQAGKQRLELEQEIEKAKTEENYIRDRLALSLKENSRLENELLENAEKLAEYENLTNK 533
Cdd:COG4913 688 AALEEQLEELEAELEELEEEL-DELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERE 766
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1370465130 534 LQRNLENvlaekfgDLDPSSAEFFLQEERLTQMRNEYERQCRVLQDQVDELQSELEEYRAQGRVLR 599
Cdd:COG4913 767 LRENLEE-------RIDALRARLNRAEEELERAMRAFNREWPAETADLDADLESLPEYLALLDRLE 825
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1252-1989 |
3.40e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 49.28 E-value: 3.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1252 QDLLFDvsvLKKKLKMLERIPEASPKYKLLYEDVSR-ENDCLQEELRMMETRYDEALENNKELTAEVFRLQDELKKMEEV 1330
Cdd:TIGR02168 192 EDILNE---LERQLKSLERQAEKAERYKELKAELRElELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEK 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1331 TET----FLSLEKSYDEVKIENEGLNVLVLRLQGKIEKLQESvvqrcdcclwEASLENLEIEPDGNILQLNQTLEECVPR 1406
Cdd:TIGR02168 269 LEElrleVSELEEEIEELQKELYALANEISRLEQQKQILRER----------LANLERQLEELEAQLEELESKLDELAEE 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1407 VRSVHHVIEECKQENQYLEGntqllekvkahEIAWLHGTIQTHQERPRVQNQVILEENTTLLGFQDKHFQHQATIAELEL 1486
Cdd:TIGR02168 339 LAELEEKLEELKEELESLEA-----------ELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEA 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1487 EKTKLQELTRKLKERVTILVKQ---KDVLSHGEKEEELKAMMHDLQITCSEMQQKVELLRYESEKLQQENSILRNEITTL 1563
Cdd:TIGR02168 408 RLERLEDRRERLQQEIEELLKKleeAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQL 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1564 ------------NEEDSISNLKLGTLNGSQ--------------EEMWQKT-ETVKQE--NAAVQKMVENLKKQISELKI 1614
Cdd:TIGR02168 488 qarldslerlqeNLEGFSEGVKALLKNQSGlsgilgvlselisvDEGYEAAiEAALGGrlQAVVVENLNAAKKAIAFLKQ 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1615 KNQQ------LDLENTELSQKNSQNQEKLQELNQRLTEMLCQKEK----------------EPGNSALEEREQEKFN--- 1669
Cdd:TIGR02168 568 NELGrvtflpLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPklrkalsyllggvlvvDDLDNALELAKKLRPGyri 647
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1670 --LKEEL---------ERCKVQSSTLvsSLEAELSEVKIQTHIVQQENHLLKDELEKMKQlhrcpDLSDFQQKISSVlsy 1738
Cdd:TIGR02168 648 vtLDGDLvrpggvitgGSAKTNSSIL--ERRREIEELEEKIEELEEKIAELEKALAELRK-----ELEELEEELEQL--- 717
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1739 nEKLLKEKEALSEELNSCVDKL-AKSSLLEHRIATMKQEQKSWEHQSASLKSQLVASQEKVQNLEDTVQNVNLQMSRMKS 1817
Cdd:TIGR02168 718 -RKELEELSRQISALRKDLARLeAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKE 796
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1818 DLRVTQQEKEALKQEVMSLHKQLQNAGgkswapeiathpSGLHNQQKRLSwDKLDHLMNEEQQLLwQENERLqtmvqntk 1897
Cdd:TIGR02168 797 ELKALREALDELRAELTLLNEEAANLR------------ERLESLERRIA-ATERRLEDLEEQIE-ELSEDI-------- 854
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1898 AELTHSREKVRQLESNLLPKHQKHLNpsgTMNPTEQEKLSLKRECDQFQKEQSPANRKVS----QMNSLEQELETIHLEN 1973
Cdd:TIGR02168 855 ESLAAEIEELEELIEELESELEALLN---ERASLEEALALLRSELEELSEELRELESKRSelrrELEELREKLAQLELRL 931
|
810
....*....|....*.
gi 1370465130 1974 EGLKKKQVKLDEQLME 1989
Cdd:TIGR02168 932 EGLEVRIDNLQERLSE 947
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
679-887 |
4.06e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.22 E-value: 4.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 679 KAQENMKQRHENETHTLEKQISDLKNEIAELQGQAAVLKEAHHEAtcrhEEEKKQLQVKLEEEKTHLQEKLRLQHEMELK 758
Cdd:COG4942 44 AALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAEL----EKEIAELRAELEAQKEELAELLRALYRLGRQ 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 759 ARLtQAQASFEREREGLQSSAWTEEKVRGLTQELEQFHQEQLTSLVEKHTLEKEELRKELLEKHQRELQEGREKMETECN 838
Cdd:COG4942 120 PPL-ALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQ 198
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1370465130 839 RRTSQIEAQFQSDCQKVTErcesaLQSLEGRYRQELKDLQEQQREEKSQ 887
Cdd:COG4942 199 KLLARLEKELAELAAELAE-----LQQEAEELEALIARLEAEAAAAAER 242
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
883-1832 |
4.11e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 48.89 E-value: 4.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 883 EEKSQWEF-EKDELTQECAEAQELLKETLKREKTTSLVLTQEREMLEKTYKEHLNSMVVERQQLLQDledlRNVSETQQS 961
Cdd:TIGR00606 158 QEDSNWPLsEGKALKQKFDEIFSATRYIKALETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRD----QITSKEAQL 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 962 LLSDQILELKSSHKRELREREEVLCQAGAS-----EQLASQRLERLEMEHDQERQEMM---------SKLLAMENIHKAT 1027
Cdd:TIGR00606 234 ESSREIVKSYENELDPLKNRLKEIEHNLSKimkldNEIKALKSRKKQMEKDNSELELKmekvfqgtdEQLNDLYHNHQRT 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1028 CETADRERAEMSTEISRLQSKIKEMQQATSPLSMLQSGCQVIGEEEVEGDGALSLLQQGEQL------LEENGDVLLSLQ 1101
Cdd:TIGR00606 314 VREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATrleldgFERGPFSERQIK 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1102 RAHEQAVKENVKMATEISRLQQRLQKLEPGLVMSSCLDEPATEFFGNTAEQTEQFLqqnrTKQVEGVtrRHVLSDLEDDE 1181
Cdd:TIGR00606 394 NFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEIL----EKKQEEL--KFVIKELQQLE 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1182 vrdlgsTGTSSVQRQEVKIEESEASVEGFSELENSEETRTESWELKNQISQLQEQLMMLCADCDRASEKKQDLLFDVSVL 1261
Cdd:TIGR00606 468 ------GSSDRILELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLT 541
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1262 KKKLKMLERIpeaspkykllYEDVSRENDCLQEELrmmetrydEALENNKELTAEVFRLQDELKKMEEvteTFLSLEKSY 1341
Cdd:TIGR00606 542 KDKMDKDEQI----------RKIKSRHSDELTSLL--------GYFPNKKQLEDWLHSKSKEINQTRD---RLAKLNKEL 600
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1342 DEVKIENEGLNVLVLRLQGKIEKLQESVVQRCDCCLWEASLENLEIEP-----------------DGNILQLNQTLEECV 1404
Cdd:TIGR00606 601 ASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIeksskqramlagatavySQFITQLTDENQSCC 680
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1405 PRVRSVHHVIEECKQENQYLEGNTQLL-EKVKAHEiawlhgTIQTHQERPRVQNQVILEENTTLLGFQDKhfqhqatiaE 1483
Cdd:TIGR00606 681 PVCQRVFQTEAELQEFISDLQSKLRLApDKLKSTE------SELKKKEKRRDEMLGLAPGRQSIIDLKEK---------E 745
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1484 LELEKTKLQELTRKLKERVTILVKQKDVLSHGEKEEELKammHDLQITCSEMQQKVELLRYESEKLQQENSILrneittl 1563
Cdd:TIGR00606 746 IPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESA---KVCLTDVTIMERFQMELKDVERKIAQQAAKL------- 815
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1564 neEDSISNLKLGTLNGSQEEMWQKTETVKQENAAVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQNQEKLQELNQR 1643
Cdd:TIGR00606 816 --QGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVEL 893
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1644 LTEMlcqkekEPGNSALEEREQEKFNLKEELERCKVQSSTLVSSLEAELSEVKIQTHIVQQE---NHLLKDELEKMKQLH 1720
Cdd:TIGR00606 894 STEV------QSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKvknIHGYMKDIENKIQDG 967
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1721 RCPDLSDFQQKISSVLSYNEKLLKEKEALSEELNscvdklakssllehriaTMKQEQKSWEHQSASLKSQLV--ASQEKV 1798
Cdd:TIGR00606 968 KDDYLKQKETELNTVNAQLEECEKHQEKINEDMR-----------------LMRQDIDTQKIQERWLQDNLTlrKRENEL 1030
|
970 980 990
....*....|....*....|....*....|....
gi 1370465130 1799 QNLEDTVQNVNLQMSRMksdlRVTQQEKEALKQE 1832
Cdd:TIGR00606 1031 KEVEEELKQHLKEMGQM----QVLQMKQEHQKLE 1060
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1575-1911 |
4.20e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.90 E-value: 4.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1575 GTLNGSQEEMWQKTETVKQENAAVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMLCQKEKE 1654
Cdd:TIGR02168 659 GVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARL 738
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1655 PGNSalEEREQEKFNLKEELERCKVQSSTLVSSLEAELSEVKIQTHIVQQENHLLKDELEKMKQLHRcpDLSDFQQKISS 1734
Cdd:TIGR02168 739 EAEV--EQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALRE--ALDELRAELTL 814
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1735 VlsyNEKLLKEKEALSEELNSCVDKLAKSSLLEHRIATMKQEQKSWEHQSASLKSQLVASQEKVQNLEDTVQNVNLQMSR 1814
Cdd:TIGR02168 815 L---NEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALAL 891
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1815 MKSDLRVTQQEKEALKQEVMSLHKQLQNAGGKswAPEIATHPSGLHNQQKRLswdkLDHLMNEEQQLLwqenERLQTMVQ 1894
Cdd:TIGR02168 892 LRSELEELSEELRELESKRSELRRELEELREK--LAQLELRLEGLEVRIDNL----QERLSEEYSLTL----EEAEALEN 961
|
330
....*....|....*..
gi 1370465130 1895 NTKAELTHSREKVRQLE 1911
Cdd:TIGR02168 962 KIEDDEEEARRRLKRLE 978
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
411-850 |
6.10e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 48.23 E-value: 6.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 411 REKEKLRSDLDKAEKLKSLMASEVDDHHAAIERRNEYnlrkldEEYKERIAALKNELRKEREQILQQagKQRLELEQEIE 490
Cdd:COG4717 64 RKPELNLKELKELEEELKEAEEKEEEYAELQEELEEL------EEELEELEAELEELREELEKLEKL--LQLLPLYQELE 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 491 KAKTEENYIRDRLAlslkensRLENELLENAEKLAEYENLTNKLQRnLENVLAEKFGDLDPSSAE----FFLQEERLTQM 566
Cdd:COG4717 136 ALEAELAELPERLE-------ELEERLEELRELEEELEELEAELAE-LQEELEELLEQLSLATEEelqdLAEELEELQQR 207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 567 RNEYERQCRVLQDQVDELQSELEEYRAQGRVLRLPLKNSPSEEVEANSGGIEPEHGLGSEECNPLNMSIEAELVIEQmke 646
Cdd:COG4717 208 LAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLG--- 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 647 qhhrdICCLRLELEDKVRHYEKQLDETVVSCKKAQENMKQRHENETHTLEKQISDLKNEIAELQGQAAVLKEAHHEAtcr 726
Cdd:COG4717 285 -----LLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREA--- 356
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 727 hEEEKKQLQVK-LEEEKTHLQEKLRLQHEMELKARLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQFHQEQLTSLVE 805
Cdd:COG4717 357 -EELEEELQLEeLEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELE 435
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 1370465130 806 KHTLEKEELRKElLEKHQRELQEGREKMET-ECNRRTSQIEAQFQS 850
Cdd:COG4717 436 ELEEELEELEEE-LEELREELAELEAELEQlEEDGELAELLQELEE 480
|
|
| KIP1 |
COG5059 |
Kinesin-like protein [Cytoskeleton]; |
1538-1759 |
7.87e-05 |
|
Kinesin-like protein [Cytoskeleton];
Pssm-ID: 227392 [Multi-domain] Cd Length: 568 Bit Score: 47.81 E-value: 7.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1538 KVELLRYESEKLQQENSILRNEITTLNEEDSISNLKLGTLNGSQEemwqkTETVKQENAAVQK-----MVENLKKQISEL 1612
Cdd:COG5059 351 EIEEIKFDLSEDRSEIEILVFREQSQLSQSSLSGIFAYMQSLKKE-----TETLKSRIDLIMKsiisgTFERKKLLKEEG 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1613 KIKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMLcqKEKEPGNSALEEREQEKFNLKEELERCKVQSSTLVSSLEAEL 1692
Cdd:COG5059 426 WKYKSTLQFLRIEIDRLLLLREEELSKKKTKIHKLN--KLRHDLSSLLSSIPEETSDRVESEKASKLRSSASTKLNLRSS 503
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1370465130 1693 SEVKIQTHIVQQENHLLKDELEkmkqlhrcpDLSDFQQKISSVLSYNEKLLKEKEALSEELNSCVDK 1759
Cdd:COG5059 504 RSHSKFRDHLNGSNSSTKELSL---------NQVDLAGSERKVSQSVGELLRETQSLNKSLSSLGDV 561
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1177-1760 |
8.42e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 47.75 E-value: 8.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1177 LEDDEVRDlgstgtsSVQRQEVKIEESEASVEGFSEL--------ENSEETRTESWELKNQISQLQEQLMMLCADCDRAS 1248
Cdd:PRK03918 141 LESDESRE-------KVVRQILGLDDYENAYKNLGEVikeikrriERLEKFIKRTENIEELIKEKEKELEEVLREINEIS 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1249 EKKQDLLFDVSVLKKKLKMLERIPEASPKYKLLYEDVSRENDCLQEELRMMETRYDEALENNKELTAEVfrlqDELKKME 1328
Cdd:PRK03918 214 SELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKV----KELKELK 289
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1329 EVTETFLSLEKSYDEVKIENEGLNVLVLRLQGKIEKLQESVvqrcdcclweaslenleiepdgnilqlnQTLEECVPRVR 1408
Cdd:PRK03918 290 EKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERI----------------------------KELEEKEERLE 341
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1409 SVHHVIEECKQENQYLEGNTQLLEKVKAheiawLHGTIQTHQER-----PRVQNQVILEENTTLLGFQDKHFQHQATIAE 1483
Cdd:PRK03918 342 ELKKKLKELEKRLEELEERHELYEEAKA-----KKEELERLKKRltgltPEKLEKELEELEKAKEEIEEEISKITARIGE 416
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1484 LELEKTKLQELTRKLKE-RVTILVKQKDVLSHGEKE--EELKAMMHDLQITCSEMQQKVELLRYESEKLQQENSILRNEI 1560
Cdd:PRK03918 417 LKKEIKELKKAIEELKKaKGKCPVCGRELTEEHRKEllEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELI 496
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1561 TTLNEEDSISNL--KLGTLNGSQ-EEMWQKTETVKQENAAVQKMVENLKKQISELKiknqQLDLENTELSQKNSQNQEKL 1637
Cdd:PRK03918 497 KLKELAEQLKELeeKLKKYNLEElEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLE----ELKKKLAELEKKLDELEEEL 572
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1638 QELNQRLTEMLCQKEKEpgnsaLEEREQE--------------KFNLKEELERCKVQSSTLVSSlEAELSEVKIQTHIVQ 1703
Cdd:PRK03918 573 AELLKELEELGFESVEE-----LEERLKElepfyneylelkdaEKELEREEKELKKLEEELDKA-FEELAETEKRLEELR 646
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*..
gi 1370465130 1704 QEnhllKDELEKMKQLHRCPDLSDFQQKISSVLSYNEKLLKEKEALSEELNSCVDKL 1760
Cdd:PRK03918 647 KE----LEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKL 699
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1300-1840 |
1.08e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 47.37 E-value: 1.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1300 ETRYDEALENNKELTAEVFRLQDELKKMEEVTETFLSLEKSYDEVKIENEGLNVLVLRLQGKIEKLqESVVQRCDCClwE 1379
Cdd:PRK03918 161 ENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKL-EKEVKELEEL--K 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1380 ASLENLEIEpdgnILQLNQTLEECVPRVRSVHHVIEECKQENQYLEGNTQLLEKVKAHEiawlhgtiqthqerprvqnqv 1459
Cdd:PRK03918 238 EEIEELEKE----LESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKA--------------------- 292
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1460 ilEENTTLLGFQDKHFQhqaTIAELELEKTKLQELTRKLKERVtilvkqKDVLSHGEKEEELKAMMHDLQITCSEMQQKV 1539
Cdd:PRK03918 293 --EEYIKLSEFYEEYLD---ELREIEKRLSRLEEEINGIEERI------KELEEKEERLEELKKKLKELEKRLEELEERH 361
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1540 ELLRYESEKLQQENSiLRNEITTLNEEDSISNLKLgtLNGSQEEMWQKTETVKQENAAVQKMVENLKKQISELKIKNQQL 1619
Cdd:PRK03918 362 ELYEEAKAKKEELER-LKKRLTGLTPEKLEKELEE--LEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKC 438
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1620 DLENTELSQKNSQN-------------------QEKLQELNQRLTEMLCQKEKEPGNSALEEREQEKFNLKEELERCKVQ 1680
Cdd:PRK03918 439 PVCGRELTEEHRKElleeytaelkriekelkeiEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLE 518
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1681 SstlVSSLEAELSEVKIQTHIVQQENHLLKDELEKMKQLHRcpDLSDFQQKISSVLSYNEKLLKEKEALS----EELNSC 1756
Cdd:PRK03918 519 E---LEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKK--KLAELEKKLDELEEELAELLKELEELGfesvEELEER 593
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1757 VDKLAKSSLLEHRIATMKQEQKSWEHQSASLKSQLVASQEKVQNLEDTVQNVNLQMSRMKSdlRVTQQEKEALKQEVMSL 1836
Cdd:PRK03918 594 LKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEK--KYSEEEYEELREEYLEL 671
|
....
gi 1370465130 1837 HKQL 1840
Cdd:PRK03918 672 SREL 675
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1478-1699 |
1.18e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 1.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1478 QATIAELELEKTKLQELTRKLKERVTILVKQKDVLSHGEKE-EELKAMMHDLQITCSEMQQKVELLRYESEKLQQENSIL 1556
Cdd:COG4942 16 AAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQlAALERRIAALARRIRALEQELAALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1557 RNEITTLNEE-----------DSISNLKLGTLNGSQEEMWQKTETVKQENAAVQKMVENLKKQISELKIKNQQLDLENTE 1625
Cdd:COG4942 96 RAELEAQKEElaellralyrlGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1370465130 1626 LSQKNSQNQEKLQELNQRltemlcQKEKEPGNSALEEREQEKFNLKEELERCKVQSSTLVSSLEAELSEVKIQT 1699
Cdd:COG4942 176 LEALLAELEEERAALEAL------KAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
726-1123 |
1.33e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 47.25 E-value: 1.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 726 RHEEEKKQLQ---VKLEEEKTHLQEKLRLQH----EM--ELkARLTQAQASFEREregLQSSAWTEEKVRGLTQELE--Q 794
Cdd:COG3096 275 RHANERRELSeraLELRRELFGARRQLAEEQyrlvEMarEL-EELSARESDLEQD---YQAASDHLNLVQTALRQQEkiE 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 795 FHQEQLTSLVEKhTLEKEELRKELLEKHQrELQEGREKMETECNRRTSQIeaqfqSDCQKVTErcesALQSLEGRYRQEL 874
Cdd:COG3096 351 RYQEDLEELTER-LEEQEEVVEEAAEQLA-EAEARLEAAEEEVDSLKSQL-----ADYQQALD----VQQTRAIQYQQAV 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 875 kdlqeqQREEKSQWEFEKDELTQECAEA-QELLKEtlKREKTTSLVLTQEREM---------LEKTYkEHLNSMV--VER 942
Cdd:COG3096 420 ------QALEKARALCGLPDLTPENAEDyLAAFRA--KEQQATEEVLELEQKLsvadaarrqFEKAY-ELVCKIAgeVER 490
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 943 -------QQLLQDLEDLRNVSETQQSL---LSDqiLELKSSHKRELREREEVLCQAGASEQLASQRLERLEMEHDQERQE 1012
Cdd:COG3096 491 sqawqtaRELLRRYRSQQALAQRLQQLraqLAE--LEQRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEE 568
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1013 mmskllameniHKATCETADRERAEMSTEISRLQSKIKEMQQ-------ATSPLSML--QSGCQVIGEEEVegdgalslL 1083
Cdd:COG3096 569 -----------LEEQAAEAVEQRSELRQQLEQLRARIKELAArapawlaAQDALERLreQSGEALADSQEV--------T 629
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 1370465130 1084 QQGEQLLEEngDVLLSLQRAHEQAVKEnvKMATEISRLQQ 1123
Cdd:COG3096 630 AAMQQLLER--EREATVERDELAARKQ--ALESQIERLSQ 665
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
392-912 |
1.55e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 46.98 E-value: 1.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 392 LASFKAEIRHLLERVDQVVREKEKLRSDLDKAEKLKslmasevddhhaaiERRNEY-NLRKLDEEYKERIAALKNELRKE 470
Cdd:PRK03918 254 KRKLEEKIRELEERIEELKKEIEELEEKVKELKELK--------------EKAEEYiKLSEFYEEYLDELREIEKRLSRL 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 471 REQI--LQQAGKQRLELEQEIEKAKTEENYIRDRLAlSLKENSRLENELLEnaeKLAEYENLTNKLQRNLENVLAEKFGD 548
Cdd:PRK03918 320 EEEIngIEERIKELEEKEERLEELKKKLKELEKRLE-ELEERHELYEEAKA---KKEELERLKKRLTGLTPEKLEKELEE 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 549 LDPSSAEFFLQEERLTQMRNEYERQCRVLQDQVDELQSELEEYRAQGRVLRLPLKNSPSEEVEANSGGIEPEhglgSEEC 628
Cdd:PRK03918 396 LEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKE----LKEI 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 629 NPLNMSIEAELVIEQMKEQHHRDICCLRlELEDKVRHYEKQLDETVVSCKKAQENMKQRHENETHTLEKQISDLKNEIAE 708
Cdd:PRK03918 472 EEKERKLRKELRELEKVLKKESELIKLK-ELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEK 550
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 709 LQGqaavlkeahheatcrHEEEKKQLQVKLEEEKTHLQEKLRlqhemelkarltqaqasfEREREGLQSSAWTEEKVrgl 788
Cdd:PRK03918 551 LEE---------------LKKKLAELEKKLDELEEELAELLK------------------ELEELGFESVEELEERL--- 594
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 789 tQELEQFHQEQLTSLVEKHTLEKEELRKELLEKHQRELQEGREKMETECNRRTSQIEAQFQSDCQKVTERCESALQSLEG 868
Cdd:PRK03918 595 -KELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSR 673
|
490 500 510 520
....*....|....*....|....*....|....*....|....*....
gi 1370465130 869 RY---RQELKDLQEQQREEKSQWEFEKDELT--QECAEAQELLKETLKR 912
Cdd:PRK03918 674 ELaglRAELEELEKRREEIKKTLEKLKEELEerEKAKKELEKLEKALER 722
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
658-907 |
1.86e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 46.71 E-value: 1.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 658 ELEDKVRHYEKQLDEtvvsckkaQENMKQRHENETHTLEKQISDLKNEIAELQGQAAvlkeahheatcRHEEEKKQLQVK 737
Cdd:pfam01576 191 DLEERLKKEEKGRQE--------LEKAKRKLEGESTDLQEQIAELQAQIAELRAQLA-----------KKEEELQAALAR 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 738 LEEE---KTHLQEKLRlqhemELKARLTQAQASFEREReglQSSAWTEEKVRGLTQELEQFHQEQltslveKHTLEKEEL 814
Cdd:pfam01576 252 LEEEtaqKNNALKKIR-----ELEAQISELQEDLESER---AARNKAEKQRRDLGEELEALKTEL------EDTLDTTAA 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 815 RKELLEKHQRELQEGREKMETEcnrrTSQIEAQFQSDCQKVTERCEsalqslegryrqELKDLQEQQREEKSQWEFEKDE 894
Cdd:pfam01576 318 QQELRSKREQEVTELKKALEEE----TRSHEAQLQEMRQKHTQALE------------ELTEQLEQAKRNKANLEKAKQA 381
|
250
....*....|...
gi 1370465130 895 LTQECAEAQELLK 907
Cdd:pfam01576 382 LESENAELQAELR 394
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
636-1551 |
2.82e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 46.12 E-value: 2.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 636 EAELVIEQMKEQHHRDICCLRLELEDKVRHYEKQLDETvvscKKAQENMKQRHENETHTLEKQISDLKNEIAELQGQAAV 715
Cdd:pfam02463 173 EALKKLIEETENLAELIIDLEELKLQELKLKEQAKKAL----EYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRD 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 716 LKEahheatcrHEEEKKQLQVKLEEEKTHLQEKLRLqhEMELKARLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQF 795
Cdd:pfam02463 249 EQE--------EIESSKQEIEKEEEKLAQVLKENKE--EEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKE 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 796 HQEQLTSLVEKHTLEKEELRKELLEKHQRELQEGREKMETECNRRTSQIEAQFQSDCQKVTERCESALQSLEGRYRQELK 875
Cdd:pfam02463 319 SEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELE 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 876 DLQEQQREEKSQWEFEKDELTQECAEAQELLKETLkrEKTTSLVLTQEREMLEKTYKEHLNSMVVERQQLLQDLEDLRNv 955
Cdd:pfam02463 399 LKSEEEKEAQLLLELARQLEDLLKEEKKEELEILE--EEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLK- 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 956 sETQQSLLSDQILELKSSHKRELREREEVLCQAGASEQLASQRLERLeMEHDQERQEMMSKLLAMENIHKATCETADRER 1035
Cdd:pfam02463 476 -ETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVG-GRIISAHGRLGDLGVAVENYKVAISTAVIVEV 553
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1036 AEMSTEISRLQSKIKEMQQATSPLSmlqsgcQVIGEEEVEGDGALSLLQQGEQLLEENGDVLLSLQRAHEQAVKENVKMA 1115
Cdd:pfam02463 554 SATADEVEERQKLVRALTELPLGAR------KLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEG 627
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1116 TEISRLQQRLQKLEPGLVMSSCLDEPATEFFGNTAEQTEQFLQQNRTKQVEgvtrrhvlsdleddevrdlgstgtssVQR 1195
Cdd:pfam02463 628 ILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEI--------------------------QEL 681
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1196 QEVKIEESEASVEGFSELENSEETRTESWELKNQISQLQEQLMMLCADCDRASEKKQDLLFDvsvlKKKLKMLEripEAS 1275
Cdd:pfam02463 682 QEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQ----KIDEEEEE---EEK 754
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1276 PKYKLLYEDVSRENDCLQEELRMMETRYDEALENNKELTAEVFRLQDELKKMEEvtetflSLEKSYDEVKIENEGLNVLV 1355
Cdd:pfam02463 755 SRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEE------ELKEEAELLEEEQLLIEQEE 828
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1356 LRLQGKIEKLQESVVQRCDCCLWEASLENLEIEPDGNILQLNQTLEECVPRVRSVHHVIEECKQENQYLEGNTQLLEKVK 1435
Cdd:pfam02463 829 KIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQK 908
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1436 AHEIAWLHGTIQTHQERPRVQNQVILEENTTLLGFQDKHFQHQATIAELELEKTKLQELTRKLKERVtilvkqkDVLSHG 1515
Cdd:pfam02463 909 LNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKV-------NLMAIE 981
|
890 900 910
....*....|....*....|....*....|....*.
gi 1370465130 1516 EKEEELKAMMHDLQITCSEMQQKVELLRYESEKLQQ 1551
Cdd:pfam02463 982 EFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQ 1017
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1622-1868 |
3.58e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.14 E-value: 3.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1622 ENTELSQKNSQNQEKLQELNQRLTEMlcQKEKEPGNSALEEREQEKFNLKEELErckvQSSTLVSSLEAELSEVKIQTHI 1701
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAAL--KKEEKALLKQLAALERRIAALARRIR----ALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1702 VQQENHLLKDELEKMK----QLHRCPDL------SDFQQKISSvLSYNEKLLKEKEALSEELNSCVDKLAkssllehria 1771
Cdd:COG4942 95 LRAELEAQKEELAELLralyRLGRQPPLalllspEDFLDAVRR-LQYLKYLAPARREQAEELRADLAELA---------- 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1772 tmkQEQKSWEHQSASLKSQLVASQEKVQNLEDTVQNVNLQMSRMKSDLRVTQQEKEALKQEVMSLHKQLQNAGGKSWAPE 1851
Cdd:COG4942 164 ---ALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
250
....*....|....*..
gi 1370465130 1852 IATHPSGLHNQQKRLSW 1868
Cdd:COG4942 241 ERTPAAGFAALKGKLPW 257
|
|
| CCDC73 |
pfam15818 |
Coiled-coil domain-containing protein 73 family; CCDC73 is a family of eukaryotic coiled-coil ... |
1476-1825 |
3.92e-04 |
|
Coiled-coil domain-containing protein 73 family; CCDC73 is a family of eukaryotic coiled-coil containing proteins. The function is not known. The alternative name is sarcoma antigen NY-SAR-79.
Pssm-ID: 464893 [Multi-domain] Cd Length: 1048 Bit Score: 45.71 E-value: 3.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1476 QHQATIAELELEKTKLQELTRklkervtilVKQKDVLSHGEKEEELKAMMHDLQITCSEMQQKVEL-LRYESEKLQQENS 1554
Cdd:pfam15818 68 QLQMKMCALEEEKGKYQLATE---------IKEKEIEGLKETLKALQVSKYSLQKKVSEMEQKLQLhLLAKEDHHKQLNE 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1555 ILRNEITTLNeedsisnlKLGTLNGSQEEMWQKTETVKQENAAVQKMVENLKKQISELK--IKNQQLDL----------- 1621
Cdd:pfam15818 139 IEKYYATITG--------QFGLVKENHGKLEQNVQEAIQLNKRLSALNKKQESEICSLKkeLKKVTSDLikskvtcqykm 210
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1622 --ENTELSQKnsqnQEKLQELNQRLT-EMLCQKEKEPGNSALEEREQEKFNLKEELERCKVQSSTLVSSLEAELSEVKIQ 1698
Cdd:pfam15818 211 geENINLTIK----EQKFQELQERLNmELELNKKINEEITHIQEEKQDIIISFQHMQQLLQQQTQANTEMEAELKALKEN 286
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1699 THIVQQENHLLKdelEKMKQlhrcpdlsdFQQKISSVLSYNEKLL----KEKEALSEELNSCVDKLakSSLLEHRIATMK 1774
Cdd:pfam15818 287 NQTLERDNELQR---EKVKE---------NEEKFLNLQNEHEKALgtwkKHVEELNGEINEIKNEL--SSLKETHIKLQE 352
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 1370465130 1775 QEQKSWEHQSaslksqlVASQEKVQNLEDtVQNVNLQMSRMKSDLRVTQQE 1825
Cdd:pfam15818 353 HYNKLCNQKK-------FEEDKKFQNVPE-VNNENSEMSTEKSENLIIQKY 395
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
507-1237 |
5.92e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 45.34 E-value: 5.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 507 LKENSRLENELLENAEKLAEYENLTNKLQRNLEnvlaEKFGDLDPSSAEFFLQEERLTQMRNEYERQCRVLQDQVDELQS 586
Cdd:TIGR00618 158 LKAKSKEKKELLMNLFPLDQYTQLALMEFAKKK----SLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLRE 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 587 ELEEYRAQGRVLRLPLKNSPSE--------EVEANSGGIEPEHGLGSEECNPLNMSIEAELVIEQMK--EQHHRDICCLR 656
Cdd:TIGR00618 234 ALQQTQQSHAYLTQKREAQEEQlkkqqllkQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKavTQIEQQAQRIH 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 657 LELEDKVRHYEKQLDETVVSCKKAQENMKQRHENEThtlekqisdlkneiaeLQGQAAVLKEAHHEATCRHEEEKKQLQV 736
Cdd:TIGR00618 314 TELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQT----------------LHSQEIHIRDAHEVATSIREISCQQHTL 377
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 737 -----KLEEEKTHLQEKLRLQHEMELKARLTQAQASFE-REREGLQSSAWTEEKVRGLTQELEQFHQEQLTSLVEKHTLE 810
Cdd:TIGR00618 378 tqhihTLQQQKTTLTQKLQSLCKELDILQREQATIDTRtSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLE 457
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 811 KEELRKELLEKHQRELQEGREKMETECNRRTSQIEAQFQSDCQKVTERCESALQSLEGRYRQELKDLQEQQREEKSQWEF 890
Cdd:TIGR00618 458 KIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTY 537
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 891 EKDELTQECAEAQ--------ELLKETLKREKTTSLVLTQEREmlekTYKEHLNSMVVERQQLLQDLEdlRNVSETQQSL 962
Cdd:TIGR00618 538 AQLETSEEDVYHQltserkqrASLKEQMQEIQQSFSILTQCDN----RSKEDIPNLQNITVRLQDLTE--KLSEAEDMLA 611
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 963 LSDQILELKSSHKRELREREEVLCQAGASEQLASQRLERLEMEHDQERQEmmSKLLAMENIHKATCETADRERAEMSTEI 1042
Cdd:TIGR00618 612 CEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVR--EHALSIRVLPKELLASRQLALQKMQSEK 689
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1043 SRLQSKIKEMQQAtspLSMLQSGCQVIGEEEVEGDGALSLLQQGEQLLEENGDVLLSLQRAHEQAVKENVKMATEISrlq 1122
Cdd:TIGR00618 690 EQLTYWKEMLAQC---QTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAH--- 763
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1123 qrlQKLEPGLVMSSCLDEPATEFFGNTAEQTEQFLQ-QNRTKQVEGVTRRHVLSDLEDDEVRDlgSTGTSSVQRQEVKIE 1201
Cdd:TIGR00618 764 ---FNNNEEVTAALQTGAELSHLAAEIQFFNRLREEdTHLLKTLEAEIGQEIPSDEDILNLQC--ETLVQEEEQFLSRLE 838
|
730 740 750
....*....|....*....|....*....|....*..
gi 1370465130 1202 ESEASV-EGFSELENSEETRTESWELKNQISQLQEQL 1237
Cdd:TIGR00618 839 EKSATLgEITHQLLKYEECSKQLAQLTQEQAKIIQLS 875
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1609-1958 |
6.61e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.06 E-value: 6.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1609 ISELKIKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMLCQKEKEPGNSALEEREQE-----KFNLKEELERCKVQSST 1683
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREyegyeLLKEKEALERQKEAIER 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1684 LVSSLEAELSEVKIQTHIVQQENHLLKDELEKMkqlhrcpdlsdfqqkissvlsyNEKLLKEKEALSEELNSCVDKL-AK 1762
Cdd:TIGR02169 245 QLASLEEELEKLTEEISELEKRLEEIEQLLEEL----------------------NKKIKDLGEEEQLRVKEKIGELeAE 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1763 SSLLEHRIATMKQEQKSWEHQSASLKSQLVASQEKVQNLEDTVQNVNLQMSRMKSDLRVTQQEKEALKQEVMSLHKQLQN 1842
Cdd:TIGR02169 303 IASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAE 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1843 AGGKswapeiathpsgLHNQQKRLswDKLDHLMNE---EQQLLWQENERLQTMVQNTKAELTHSREKVRQLESNLLPK-- 1917
Cdd:TIGR02169 383 TRDE------------LKDYREKL--EKLKREINElkrELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKal 448
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 1370465130 1918 -----HQKHLNPSGTMNPTEQEKLSLKRECDQFQKEQSPANRKVSQ 1958
Cdd:TIGR02169 449 eikkqEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAE 494
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
696-828 |
6.64e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 44.77 E-value: 6.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 696 EKQISDLKNEiAELQGQAAVL--KEAHHEATCRHEEEKKQLQVKLEE-EKTHLQEKLRLQHEMELkarLTQAQASFERER 772
Cdd:PRK12704 41 KRILEEAKKE-AEAIKKEALLeaKEEIHKLRNEFEKELRERRNELQKlEKRLLQKEENLDRKLEL---LEKREEELEKKE 116
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 1370465130 773 EGLQSsawTEEKVRGLTQELEQFHQEQLTSLVEKHTLEKEELRKELLEKHQRELQE 828
Cdd:PRK12704 117 KELEQ---KQQELEKKEEELEELIEEQLQELERISGLTAEEAKEILLEKVEEEARH 169
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
458-591 |
8.08e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 44.38 E-value: 8.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 458 ERIAALK-NELRKEREQILQQAGKQRLELEQEIEKAKTEENyirdrlalsLKENSRLENELlenAEKLAEYENLTNKLQR 536
Cdd:PRK12704 26 KKIAEAKiKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEI---------HKLRNEFEKEL---RERRNELQKLEKRLLQ 93
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 1370465130 537 NlENVLAEKFGDLDPSSAEFFLQEERLTQMRNEYERQCRVLQDQVDELQSELEEY 591
Cdd:PRK12704 94 K-EENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERI 147
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
810-1013 |
8.09e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 8.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 810 EKEELRKELlEKHQRELQEGREKMETECNRRTSqIEAQFQSDCQKVTERcESALQSLEGRY---RQELKDLQEQQREEKS 886
Cdd:COG4942 21 AAAEAEAEL-EQLQQEIAELEKELAALKKEEKA-LLKQLAALERRIAAL-ARRIRALEQELaalEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 887 QWEFEKDELTQECAEAQellkeTLKREKTTSLVLTQE-------REMLEKTYKEHLNSMVVERQQLLQDLEDLRNVSETQ 959
Cdd:COG4942 98 ELEAQKEELAELLRALY-----RLGRQPPLALLLSPEdfldavrRLQYLKYLAPARREQAEELRADLAELAALRAELEAE 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1370465130 960 QSLLSDQILELKSSHKR---ELREREEVLCQAGASEQLASQRLERLEMEHDQERQEM 1013
Cdd:COG4942 173 RAELEALLAELEEERAAleaLKAERQKLLARLEKELAELAAELAELQQEAEELEALI 229
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1294-1991 |
8.16e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 44.67 E-value: 8.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1294 EELRMMETRYDEALENNKELTAEVFRLQDELKKMEEvtetflsleksYDEVKIENEGLNVLVLRLQGKIEKLQESVVQRc 1373
Cdd:TIGR02169 177 EELEEVEENIERLDLIIDEKRQQLERLRREREKAER-----------YQALLKEKREYEGYELLKEKEALERQKEAIER- 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1374 DCCLWEASLENLEIEpdgnILQLNQTLEECVPRVRSVHHVIEEcKQENQYLEGNTQLLEkVKAhEIAWLHGTIQTHQERP 1453
Cdd:TIGR02169 245 QLASLEEELEKLTEE----ISELEKRLEEIEQLLEELNKKIKD-LGEEEQLRVKEKIGE-LEA-EIASLERSIAEKEREL 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1454 RvqnqvileenttllgfqdkhfQHQATIAELELEKTKLQELTRKLKERVTILVKQKDVLShgEKEEELKAMMHDLQITCS 1533
Cdd:TIGR02169 318 E---------------------DAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLT--EEYAELKEELEDLRAELE 374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1534 EMQQKVELLRYESEKLQQENSILRNEITTLNEEDSISNLKLGTLNGSQEEMWQKTETVKQENAAVQKMVENLKKQISELK 1613
Cdd:TIGR02169 375 EVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQE 454
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1614 IKNQQLDLENTELSQKNSQNQEKLQELNQRLTEM---LCQKEKE--------PGNSA----LEEREQEKFNLKEELERCK 1678
Cdd:TIGR02169 455 WKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLqreLAEAEAQaraseervRGGRAveevLKASIQGVHGTVAQLGSVG 534
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1679 VQSSTLV-SSLEAELSEVKIQTHIVQQEN-HLLKDE---------LEKMKQLHRCP-------------DLSDFQQKISS 1734
Cdd:TIGR02169 535 ERYATAIeVAAGNRLNNVVVEDDAVAKEAiELLKRRkagratflpLNKMRDERRDLsilsedgvigfavDLVEFDPKYEP 614
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1735 VLSY-------------------------------------------NEKLLKEKEALSEELNSCVDKLAKsslLEHRIA 1771
Cdd:TIGR02169 615 AFKYvfgdtlvvedieaarrlmgkyrmvtlegelfeksgamtggsraPRGGILFSRSEPAELQRLRERLEG---LKRELS 691
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1772 TMKQEQKSWEHQSASLKSQLVASQEKV-------QNLEDTVQNVNLQMSRMKSDLRVTQQEKEALKQEVMSLHKqlqnag 1844
Cdd:TIGR02169 692 SLQSELRRIENRLDELSQELSDASRKIgeiekeiEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEA------ 765
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1845 gkswapEIATHPSGLHNQQKRLSwdkldhlmNEEQQLLWQENERLQTMVQNTKAELTHSREKVRQLESNLLPKHQKHLNP 1924
Cdd:TIGR02169 766 ------RIEELEEDLHKLEEALN--------DLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYL 831
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1370465130 1925 SGTMNPTEQEKLSLKRECDQFQKEQSPANRKVSQMNS----LEQELETIHLENEGLKKKQVKLDEQLMEMQ 1991
Cdd:TIGR02169 832 EKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEeleeLEAALRDLESRLGDLKKERDELEAQLRELE 902
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
782-1345 |
8.61e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 44.67 E-value: 8.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 782 EEKVRGLTQELEQFHQEQLTSLVEKHTLEKEELRKELLEKHQRELQEGREKMETECNRRTSQIEaqfqsDCQKVTERCES 861
Cdd:PRK03918 213 SSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIE-----ELEEKVKELKE 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 862 aLQSLEGRYRqELKDLQEQQREEKSQWEFEKDELTQECAEAQELLKETLKREKTTSLVLTQEREMLEKtyKEHLNSMVVE 941
Cdd:PRK03918 288 -LKEKAEEYI-KLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKR--LEELEERHEL 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 942 RQQLLQDLEDLRNVSETQQSLLSDQIL-ELKSSHKRELREREEvlcqagaseqlasqrLERLEMEHDQERQEMMSKLLAM 1020
Cdd:PRK03918 364 YEEAKAKKEELERLKKRLTGLTPEKLEkELEELEKAKEEIEEE---------------ISKITARIGELKKEIKELKKAI 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1021 ENIHKA--TCETADRE---------RAEMSTEISRLQSKIKEMQQATSPLSMLQSGCQVIGEEEVEGDGALSLLQQGEQL 1089
Cdd:PRK03918 429 EELKKAkgKCPVCGRElteehrkelLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKEL 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1090 LEE----NGDVLLSLQRAHEQAVKENVKMATEISRLQQRLQKLEPglvmsscldepatefFGNTAEQTEQFLQQNRTKqv 1165
Cdd:PRK03918 509 EEKlkkyNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEE---------------LKKKLAELEKKLDELEEE-- 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1166 egvtrrhvLSDLEddevRDLGSTGTSSVQRQEVKIEESEASVEGFSELENSEEtrtESWELKNQISQLQEQLmmlcadcD 1245
Cdd:PRK03918 572 --------LAELL----KELEELGFESVEELEERLKELEPFYNEYLELKDAEK---ELEREEKELKKLEEEL-------D 629
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1246 RASEKKQDLLFDVSVLKKKLKMLERI--PEASPKYKLLYEDVSRENDCLQEELRMMETRYDEALENNKELTAEvfrlqde 1323
Cdd:PRK03918 630 KAFEELAETEKRLEELRKELEELEKKysEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEE------- 702
|
570 580
....*....|....*....|..
gi 1370465130 1324 LKKMEEVTETFLSLEKSYDEVK 1345
Cdd:PRK03918 703 LEEREKAKKELEKLEKALERVE 724
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1766-1967 |
1.46e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.21 E-value: 1.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1766 LEHRIATMKQEQKSWEHQSASLKSQLVASQEKVQNLEDTVQNVNLQMSRMKSDLRVTQQEKEALKQEVMSLHKQLQN--- 1842
Cdd:COG4942 32 LQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAEllr 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1843 ---AGGKSWAPEIATHPSGLHNQQKRLSWdkLDHLMNEEQQLLwQENERLQTMVQNTKAELTHSREKVRQLESNLLPKHQ 1919
Cdd:COG4942 112 alyRLGRQPPLALLLSPEDFLDAVRRLQY--LKYLAPARREQA-EELRADLAELAALRAELEAERAELEALLAELEEERA 188
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1370465130 1920 KhlnpsgtmnpTEQEKLSLKRECDQFQKEQSPANRKVSQMNSLEQELE 1967
Cdd:COG4942 189 A----------LEALKAERQKLLARLEKELAELAAELAELQQEAEELE 226
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
399-815 |
1.46e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.95 E-value: 1.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 399 IRHLLERVDQVVREKEKLRSDLdkaEKLKSLMASEVDDHHAAIERRNEyNLRKLD------EEYKERIAALKNELRKER- 471
Cdd:pfam15921 414 IDHLRRELDDRNMEVQRLEALL---KAMKSECQGQMERQMAAIQGKNE-SLEKVSsltaqlESTKEMLRKVVEELTAKKm 489
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 472 -----EQILQQAGKQRLELEQEIEKAKTEENYIRDRLALSLKENSRLENE--LLENAE--------KLAEYENLTNKLQR 536
Cdd:pfam15921 490 tlessERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEgdHLRNVQtecealklQMAEKDKVIEILRQ 569
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 537 NLENvLAEKFGDLDPSSAEFFLQEERLTQMRNEYE---RQCRVLQDQVDELQSELEEYRAQGRVLRLPLKNSPSEEVEAN 613
Cdd:pfam15921 570 QIEN-MTQLVGQHGRTAGAMQVEKAQLEKEINDRRlelQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAV 648
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 614 SGGIEPEHGLGSEECNPLN----MSIEAELVIEQMKEQHHrdicclrlELEDKVRHYEKQLDETVVSCKKAQENMKQRHE 689
Cdd:pfam15921 649 KDIKQERDQLLNEVKTSRNelnsLSEDYEVLKRNFRNKSE--------EMETTTNKLKMQLKSAQSELEQTRNTLKSMEG 720
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 690 NETHT------LEKQISDLKNEIAELQGQAAVLKEAHHEATCRH---EEEKKQLQVKLE---EEKTHLQEKLRLQHEMEL 757
Cdd:pfam15921 721 SDGHAmkvamgMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKhflKEEKNKLSQELStvaTEKNKMAGELEVLRSQER 800
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*...
gi 1370465130 758 KARLTQAQASFEREREGLQSSAwteekvrglTQELEQFHQEQLTSLVEKHTLEKEELR 815
Cdd:pfam15921 801 RLKEKVANMEVALDKASLQFAE---------CQDIIQRQEQESVRLKLQHTLDVKELQ 849
|
|
| CCDC73 |
pfam15818 |
Coiled-coil domain-containing protein 73 family; CCDC73 is a family of eukaryotic coiled-coil ... |
733-1021 |
1.51e-03 |
|
Coiled-coil domain-containing protein 73 family; CCDC73 is a family of eukaryotic coiled-coil containing proteins. The function is not known. The alternative name is sarcoma antigen NY-SAR-79.
Pssm-ID: 464893 [Multi-domain] Cd Length: 1048 Bit Score: 43.78 E-value: 1.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 733 QLQVKLEEEKTHLQEK-----LRLQHEMELKARLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQFHQEQLTSLVEKH 807
Cdd:pfam15818 236 ELNKKINEEITHIQEEkqdiiISFQHMQQLLQQQTQANTEMEAELKALKENNQTLERDNELQREKVKENEEKFLNLQNEH 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 808 -----TLEK--EELRKEL---------LEKHQRELQEGREKMeteCNRRTSQIEAQFQSDCQKVTERCESALQSLEGRYR 871
Cdd:pfam15818 316 ekalgTWKKhvEELNGEIneiknelssLKETHIKLQEHYNKL---CNQKKFEEDKKFQNVPEVNNENSEMSTEKSENLII 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 872 QelKDLQEQQREEKSQWEFEKDeltqecaeaQELLKETLKREKTTSLVLTQEREMLEKTYKEHLNSMVveRQQLLQDLED 951
Cdd:pfam15818 393 Q--KYNSEQEIREENTKSFCSD---------TEYRETEKKKGPPVEEIIIEDLQVLEKSFKNEIDTSV--PQDKNQSEIS 459
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1370465130 952 LRNVSETQQSLLS-DQILELKSSHKRELREREEVLCQAGASEQLASQRLERLEMEHDQERQEMMSKLLAME 1021
Cdd:pfam15818 460 LSKTLCTDKDLISqGQTLNVTDFRKSVTTEIKDKLCLEKDNGCSEFKSPNNLFLVADQSIETEKIHLESTE 530
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
783-984 |
1.54e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 1.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 783 EKVRGLTQELEQFHQE--QLTSLVEKHTLEKEELRKELLEKHQRELQEGREKMETECNRRTSQIEAQfqsdcqkvTERCE 860
Cdd:COG4913 255 EPIRELAERYAAARERlaELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDAL--------REELD 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 861 SALQSLEGRYRQELKDLQEQQReeksQWEFEKDELTQECAEAQELLketlkreKTTSLVLTQEREMLEKTYKEHlnsmvv 940
Cdd:COG4913 327 ELEAQIRGNGGDRLEQLEREIE----RLERELEERERRRARLEALL-------AALGLPLPASAEEFAALRAEA------ 389
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1370465130 941 erQQLLQDLEDLRNVSETQQSLLSDQILELKSSHKRELREREEV 984
Cdd:COG4913 390 --AALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASL 431
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
659-884 |
1.89e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.40 E-value: 1.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 659 LEDKVRHYEKQLDEtvvsckkAQENMK--QRHENETHTLEKQISDLKNEIAelqgQAAVLKEAHHEATCRHEEEKKQL-- 734
Cdd:COG3096 891 LADRLEELREELDA-------AQEAQAfiQQHGKALAQLEPLVAVLQSDPE----QFEQLQADYLQAKEQQRRLKQQIfa 959
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 735 ---------------QVKLEEEKTHLQEKLRlqhemelkARLTQAQASFEREREglqssawteeKVRGLTQELEQFHQEq 799
Cdd:COG3096 960 lsevvqrrphfsyedAVGLLGENSDLNEKLR--------ARLEQAEEARREARE----------QLRQAQAQYSQYNQV- 1020
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 800 LTSLVEKHtlekeELRKELLEKHQRELQE----GREKMETECNRRTSQIEAQFQSDCQKVTE------RCESALQSLEGR 869
Cdd:COG3096 1021 LASLKSSR-----DAKQQTLQELEQELEElgvqADAEAEERARIRRDELHEELSQNRSRRSQlekqltRCEAEMDSLQKR 1095
|
250
....*....|....*
gi 1370465130 870 YRQELKDLQeQQREE 884
Cdd:COG3096 1096 LRKAERDYK-QEREQ 1109
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
685-1013 |
2.01e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 43.36 E-value: 2.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 685 KQRHENETHTLEKQISDLKNEIAELQGQAAVLKEAHHEATcRHEEEK---KQLQVKLEEEKTHLQEklrLQHEM-ELKAR 760
Cdd:PRK11281 75 IDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEET-RETLSTlslRQLESRLAQTLDQLQN---AQNDLaEYNSQ 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 761 LTQAQASFEREReglqsSAWTEEKVRglTQELEQfhqeQLTSLvekhTLEKEELRKELLEKHQRELQEGREKMETecNRR 840
Cdd:PRK11281 151 LVSLQTQPERAQ-----AALYANSQR--LQQIRN----LLKGG----KVGGKALRPSQRVLLQAEQALLNAQNDL--QRK 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 841 TSQIEAQFQSDCQKvtERCESALQSleGRYRQELKDLQE---QQREEKSQWEFEKDELTQECAEAQEllKETLKREKTTS 917
Cdd:PRK11281 214 SLEGNTQLQDLLQK--QRDYLTARI--QRLEHQLQLLQEainSKRLTLSEKTVQEAQSQDEAARIQA--NPLVAQELEIN 287
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 918 LVLTQerEMLEKTykEHLNSMVverQQLLQDLEDLRNVSETQQSlLSDQILELKSS--HKRELREREEVLCQAGASEQLA 995
Cdd:PRK11281 288 LQLSQ--RLLKAT--EKLNTLT---QQNLRVKNWLDRLTQSERN-IKEQISVLKGSllLSRILYQQQQALPSADLIEGLA 359
|
330 340
....*....|....*....|..
gi 1370465130 996 SQ----RLERLEMehDQERQEM 1013
Cdd:PRK11281 360 DRiadlRLEQFEI--NQQRDAL 379
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1485-1676 |
2.26e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.21 E-value: 2.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1485 ELEKTKLQELTRKLKERVTILVKQKDVLSHGEKEEELKAMMHDLQITCSEMQQKVELLRYESEKLQQENSILRNEITTLN 1564
Cdd:PTZ00121 1616 EEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALK 1695
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1565 EEdsisnlklgtlngsqEEMWQKTETVKQENAAVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQNQEKLQELNQrl 1644
Cdd:PTZ00121 1696 KE---------------AEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKK-- 1758
|
170 180 190
....*....|....*....|....*....|..
gi 1370465130 1645 temLCQKEKEPGNSALEEREQEKFNLKEELER 1676
Cdd:PTZ00121 1759 ---IAHLKKEEEKKAEEIRKEKEAVIEEELDE 1787
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
411-954 |
2.37e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.09 E-value: 2.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 411 REKEKLRSDLDKAEKLKSLMASEVDDHHAAIERRNE--YNLRKLDEEYKERIAALkNELRKEREQI---LQQAGKQRLEL 485
Cdd:TIGR04523 166 KQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELllSNLKKKIQKNKSLESQI-SELKKQNNQLkdnIEKKQQEINEK 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 486 EQEIEKAKTEENYIRDRLALSLKENSRLENELLENAEKLAEYENLTNKLQRNLENVLAEKFGDLDPSSAEFFLQEerltq 565
Cdd:TIGR04523 245 TTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKELKSELKNQ----- 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 566 mrneyERQCRVLQDQVDELQSELEEYRAQGRVLRLPLKNSPSEEVEANsggiepehglgsEECNPLNMSIEAELVIEQMK 645
Cdd:TIGR04523 320 -----EKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQ------------RELEEKQNEIEKLKKENQSY 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 646 EQHHRDICCLRLELEDKVRHYEKQLDETVVSCKKAQENmKQRHENETHTLEKQISDLKNEIAELQGQAAVLKEAHHEATC 725
Cdd:TIGR04523 383 KQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQE-KELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDN 461
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 726 RHEEEKKQLQVKLEEEKTHLQEKLRLQHEMELKarlTQAQASFEREREGLqssawtEEKVRGLTQEleqfhQEQLTSLVE 805
Cdd:TIGR04523 462 TRESLETQLKVLSRSINKIKQNLEQKQKELKSK---EKELKKLNEEKKEL------EEKVKDLTKK-----ISSLKEKIE 527
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 806 KHTLEKEELRKELlekhqRELQEGREKMETECNRrtSQIEAQFQSDCQKVTERCESalqslegryRQELKDLQEQQREEK 885
Cdd:TIGR04523 528 KLESEKKEKESKI-----SDLEDELNKDDFELKK--ENLEKEIDEKNKEIEELKQT---------QKSLKKKQEEKQELI 591
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1370465130 886 SQWEFEKDELTQECAEaQELLKETLKREKTTSLVLTQEREMLEKTYKEHLNSMVVERQQLLQDLEDLRN 954
Cdd:TIGR04523 592 DQKEKEKKDLIKEIEE-KEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRN 659
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
390-977 |
2.48e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 43.29 E-value: 2.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 390 AALASFKAEIRHLLERVDQVVREK-EKLRSDLDKAEKLKSLMaSEVDDHHAAIERrneyNLRKLDEEYKERIAALKNELR 468
Cdd:pfam12128 315 AAVAKDRSELEALEDQHGAFLDADiETAAADQEQLPSWQSEL-ENLEERLKALTG----KHQDVTAKYNRRRSKIKEQNN 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 469 KEREQILQQAGKQRleleQEIEKAKTEENYIRDRLALSLkeNSRLENELLENAEKLAEYENLTNKLQRNLENVLAEkfgd 548
Cdd:pfam12128 390 RDIAGIKDKLAKIR----EARDRQLAVAEDDLQALESEL--REQLEAGKLEFNEEEYRLKSRLGELKLRLNQATAT---- 459
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 549 ldpssaefflqEERLTQMRNEyerqcrvlQDQVDELQSELEEYRAQgrVLRLplknsPSEEVEANSGGIEPEHGLGSEEC 628
Cdd:pfam12128 460 -----------PELLLQLENF--------DERIERAREEQEAANAE--VERL-----QSELRQARKRRDQASEALRQASR 513
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 629 NPLNMSIEAELVIEQMKEQHHRDICCLRLELEDKVRHYEK----------QLDETVVSCKKAQEN--------MKQRHEN 690
Cdd:pfam12128 514 RLEERQSALDELELQLFPQAGTLLHFLRKEAPDWEQSIGKvispellhrtDLDPEVWDGSVGGELnlygvkldLKRIDVP 593
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 691 ETHTLEKQisdlkneiaeLQGQAAVLKEAHHEATCRHEEEKKQLqVKLEEEKTHLQEKLRLQHEMELKARLTQAQASFER 770
Cdd:pfam12128 594 EWAASEEE----------LRERLDKAEEALQSAREKQAAAEEQL-VQANGELEKASREETFARTALKNARLDLRRLFDEK 662
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 771 EREGLQSSAWTEEKVRGLTQELEQFhQEQLTSLVEKHTLEKEELRKELLEKHQRELQ-----------------EGREKM 833
Cdd:pfam12128 663 QSEKDKKNKALAERKDSANERLNSL-EAQLKQLDKKHQAWLEEQKEQKREARTEKQAywqvvegaldaqlallkAAIAAR 741
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 834 ETECNRRTSQIEAQFQSDCQK------VTERCESALQSLEGRYRQELKDLQEQQREE---KSQWEFEKDELTQECAE--- 901
Cdd:pfam12128 742 RSGAKAELKALETWYKRDLASlgvdpdVIAKLKREIRTLERKIERIAVRRQEVLRYFdwyQETWLQRRPRLATQLSNier 821
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 902 AQELLKETLKRE----KTTSLVLTQEREMLEKTYKE--HLNSMVVERQQLLQDLEDLRNVSETQQSL--LSDQILELKSS 973
Cdd:pfam12128 822 AISELQQQLARLiadtKLRRAKLEMERKASEKQQVRlsENLRGLRCEMSKLATLKEDANSEQAQGSIgeRLAQLEDLKLK 901
|
....
gi 1370465130 974 HKRE 977
Cdd:pfam12128 902 RDYL 905
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
1586-2153 |
2.73e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 43.14 E-value: 2.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1586 QKTETVKQENAAVQKMVENLKKQISELKIKNQQLDLENTELSQK---NSQNQEKLQELNQRLTEMLCQKEkepgnsaLEE 1662
Cdd:COG5022 807 GSRKEYRSYLACIIKLQKTIKREKKLRETEEVEFSLKAEVLIQKfgrSLKAKKRFSLLKKETIYLQSAQR-------VEL 879
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1663 REQEKFNLKEELERckVQSSTLVSS-LEAELSEVKIQTHIVQQENHLLKDELEKM-KQLHRCPDLSDFQQKISSVLSYNE 1740
Cdd:COG5022 880 AERQLQELKIDVKS--ISSLKLVNLeLESEIIELKKSLSSDLIENLEFKTELIARlKKLLNNIDLEEGPSIEYVKLPELN 957
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1741 KLLKEKEALSEELNSCVDKLAKSSLLEHRIATMKQEQKSWEHQSASLKSQLVASQEKVQNLEDTvqnvNLQMSRMKSDLR 1820
Cdd:COG5022 958 KLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYGALQESTKQLKEL----PVEVAELQSASK 1033
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1821 VTQQEKEALK-----QEVMSLHKQLQNAGGKSwAPEIATHPSGLHNQQKRLSWD----------KLDHLMNEEQQLLWQE 1885
Cdd:COG5022 1034 IISSESTELSilkplQKLKGLLLLENNQLQAR-YKALKLRRENSLLDDKQLYQLestenllktiNVKDLEVTNRNLVKPA 1112
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1886 NERLQTMVQNTKAELTH-SREKVRQLESNLLPKHQK-----HLNPSGTMNPTEQEKLSLKRECDQFQKEQSPAN------ 1953
Cdd:COG5022 1113 NVLQFIVAQMIKLNLLQeISKFLSQLVNTLEPVFQKlsvlqLELDGLFWEANLEALPSPPPFAALSEKRLYQSAlydeks 1192
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1954 -RKVSQMNSLEQELETIHLENEGLKKKQVKLDEQLMEMQHLRSTATPSPSPHAWDLQLLQQQACPMvpreQFLQLQRQLL 2032
Cdd:COG5022 1193 kLSSSEVNDLKNELIALFSKIFSGWPRGDKLKKLISEGWVPTEYSTSLKGFNNLNKKFDTPASMSN----EKLLSLLNSI 1268
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 2033 QAERINQHLQEELENRTSETNTPQGNQEQLvtvmeERMIEVEQKLKLvKRLLQEKVNQlkeQLCKNTKADAMVKDLYVEn 2112
Cdd:COG5022 1269 DNLLSSYKLEEEVLPATINSLLQYINVGLF-----NALRTKASSLRW-KSATEVNYNS---EELDDWCREFEISDVDEE- 1338
|
570 580 590 600
....*....|....*....|....*....|....*....|.
gi 1370465130 2113 aqllkaLEVTEQRQKTAEKKNYLLeEKIASLSNIVRNLTPA 2153
Cdd:COG5022 1339 ------LEELIQAVKVLQLLKDDL-NKLDELLDACYSLNPA 1372
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
496-1054 |
2.83e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 42.90 E-value: 2.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 496 ENYIRDRLALSLKENSRLENELLENAEKlaEYENLTNKLQrnlenvlAEKFGDLDPSSAEFFLQEERLTqMRNEYERQCR 575
Cdd:pfam12128 224 EHWIRDIQAIAGIMKIRPEFTKLQQEFN--TLESAELRLS-------HLHFGYKSDETLIASRQEERQE-TSAELNQLLR 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 576 VLQDQVDELQSEL-----------EEYRAQGRVLRLPLKNSPSEEVEANSGGIEPEHGLGSEeCNPLNMSIEAElvieqm 644
Cdd:pfam12128 294 TLDDQWKEKRDELngelsaadaavAKDRSELEALEDQHGAFLDADIETAAADQEQLPSWQSE-LENLEERLKAL------ 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 645 kEQHHRDIcclrleledkVRHYEKQLDETVVSCKKAQENMKQRHENETHTLEKQISDLKNEiaeLQGQAAVLKEAHHEAT 724
Cdd:pfam12128 367 -TGKHQDV----------TAKYNRRRSKIKEQNNRDIAGIKDKLAKIREARDRQLAVAEDD---LQALESELREQLEAGK 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 725 CRHEEEKKQLQVKLEEEKTHL-------QEKLRLQHEMEL--KARLTQAQASFERER---EGLQSSAWTEEKVRGLTQEl 792
Cdd:pfam12128 433 LEFNEEEYRLKSRLGELKLRLnqatatpELLLQLENFDERieRAREEQEAANAEVERlqsELRQARKRRDQASEALRQA- 511
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 793 EQFHQEQLTSLVEKHT---------------------------LEKEELRKELLEKHQRELQEGREK------------- 832
Cdd:pfam12128 512 SRRLEERQSALDELELqlfpqagtllhflrkeapdweqsigkvISPELLHRTDLDPEVWDGSVGGELnlygvkldlkrid 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 833 ------METECNRRTSQIEAQFQSDcQKVTERCESALQSLEG----------RYRQELKDLQEQQREEKSQWEFEKDELT 896
Cdd:pfam12128 592 vpewaaSEEELRERLDKAEEALQSA-REKQAAAEEQLVQANGelekasreetFARTALKNARLDLRRLFDEKQSEKDKKN 670
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 897 QECAEAQELLKETL-KREKTTSLVLTQEREMLEKTyKEHLNSMVVERQQLLQDLEDLRNVsetQQSLLSDQILELKSSHK 975
Cdd:pfam12128 671 KALAERKDSANERLnSLEAQLKQLDKKHQAWLEEQ-KEQKREARTEKQAYWQVVEGALDA---QLALLKAAIAARRSGAK 746
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 976 RELREREEVLCQAGASEQLASQRLERLEmehdQERQEMMSKLLAME-NIHKATC------ETADRERAEMSTEISRLQSK 1048
Cdd:pfam12128 747 AELKALETWYKRDLASLGVDPDVIAKLK----REIRTLERKIERIAvRRQEVLRyfdwyqETWLQRRPRLATQLSNIERA 822
|
....*.
gi 1370465130 1049 IKEMQQ 1054
Cdd:pfam12128 823 ISELQQ 828
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1487-1996 |
2.88e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.21 E-value: 2.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1487 EKTKLQELTRKLKERVTILVKQKdvLSHGEKEEELKAMMHDLQITCSEMQQKVELLRYESEKLQQENSILRNEITTLNEE 1566
Cdd:PTZ00121 1288 EKKKADEAKKAEEKKKADEAKKK--AEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEK 1365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1567 DSISNLKLGTLNGSQEEMWQKTETVKQENAAvQKMVENLKKQISELKIKNQQldLENTELSQKNSQNQEKLQELNQRLTE 1646
Cdd:PTZ00121 1366 AEAAEKKKEEAKKKADAAKKKAEEKKKADEA-KKKAEEDKKKADELKKAAAA--KKKADEAKKKAEEKKKADEAKKKAEE 1442
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1647 MlcQKEKEPGNSALEEREQEKFNLKEElERCKVQSSTLVSSLEAELSEVKIQTHIVQQENHLLKDELEKMKQLHRCPDLS 1726
Cdd:PTZ00121 1443 A--KKADEAKKKAEEAKKAEEAKKKAE-EAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAE 1519
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1727 dfQQKISSVLSYNEKLLKEKEALSEELNSCVDKLAKSSLLEHRIATMKQEQ--KSWEHQSASLKSQLVASQEKVQNLEDT 1804
Cdd:PTZ00121 1520 --EAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEakKAEEDKNMALRKAEEAKKAEEARIEEV 1597
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1805 VQNVNLQMSRMKSDLRVTQQEK---------EALKQEVMSLHKQLQNAGGKswAPEIATHPSGLHNQQKRLSWDKLDHLM 1875
Cdd:PTZ00121 1598 MKLYEEEKKMKAEEAKKAEEAKikaeelkkaEEEKKKVEQLKKKEAEEKKK--AEELKKAEEENKIKAAEEAKKAEEDKK 1675
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1876 NEEQQLLWQENERLQTMVQNTKAELTHSREKVRQLESNLLPKHQKhLNPSGTMNPTEQEKLSL-----KRECDQFQKEQS 1950
Cdd:PTZ00121 1676 KAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEE-LKKAEEENKIKAEEAKKeaeedKKKAEEAKKDEE 1754
|
490 500 510 520
....*....|....*....|....*....|....*....|....*.
gi 1370465130 1951 PANRKVSQMNSLEQELETIHLENEGLKKKQVKLDEQLMEMQHLRST 1996
Cdd:PTZ00121 1755 EKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKI 1800
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
465-1054 |
3.02e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 42.73 E-value: 3.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 465 NELRKEREQILQQAGKQRLELEQEIEKAKTEENYIRDRLALSLKENSRLENELLENAEKLAEYENLTNKLQRNLENVLAE 544
Cdd:TIGR00606 304 NDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFE 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 545 KFGDLDPSSAEFF--------------------------LQEERLTQMRNEYERQCRVLQDQVDELQSELEEYRAQGRVL 598
Cdd:TIGR00606 384 RGPFSERQIKNFHtlvierqedeaktaaqlcadlqskerLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKEL 463
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 599 RlPLKNSPSEEVEANSGGIEPEHGLGSEECNPLNMSIEAELV-IEQMKEQHHRDICCLRLELEDKVRHYEKQLDETVVSC 677
Cdd:TIGR00606 464 Q-QLEGSSDRILELDQELRKAERELSKAEKNSLTETLKKEVKsLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTK 542
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 678 KKAQE-----NMKQRHENET-----------------HTLEKQISDLKNEIAELQGQAAVLKEAHHEAtcRHEEEKKQLQ 735
Cdd:TIGR00606 543 DKMDKdeqirKIKSRHSDELtsllgyfpnkkqledwlHSKSKEINQTRDRLAKLNKELASLEQNKNHI--NNELESKEEQ 620
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 736 VKLEEEK-------THLQEKL-RLQHEMEL----KARLTQAQASFEREREGL---------------QSSAWTEEKVRGL 788
Cdd:TIGR00606 621 LSSYEDKlfdvcgsQDEESDLeRLKEEIEKsskqRAMLAGATAVYSQFITQLtdenqsccpvcqrvfQTEAELQEFISDL 700
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 789 TQELEQF--HQEQLTSLVEKHTLEKEEL------RKELLEKHQRELQEGREKME---TECNRRTSQIEAQ---------- 847
Cdd:TIGR00606 701 QSKLRLApdKLKSTESELKKKEKRRDEMlglapgRQSIIDLKEKEIPELRNKLQkvnRDIQRLKNDIEEQetllgtimpe 780
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 848 --FQSDCQK---VTERCESALQSLEGRYRQELKDLQ--------EQQREEKSQWEFEKDELTQECAEAQELLKEtlkREK 914
Cdd:TIGR00606 781 eeSAKVCLTdvtIMERFQMELKDVERKIAQQAAKLQgsdldrtvQQVNQEKQEKQHELDTVVSKIELNRKLIQD---QQE 857
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 915 TTSLVLTQEREMleKTYKEHLNSMVVERQQLLQDLEDLRNVSETQQSLLSD---QILELKSSHKRELREREEVLCQAGAS 991
Cdd:TIGR00606 858 QIQHLKSKTNEL--KSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDakeQDSPLETFLEKDQQEKEELISSKETS 935
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1370465130 992 EQLAsqrlerlEMEHDQERQEMMSKLLAMENIHKATCETADRERAEMSTEISRLQSKIKEMQQ 1054
Cdd:TIGR00606 936 NKKA-------QDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEK 991
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1484-1995 |
3.89e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 42.41 E-value: 3.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1484 LELEKTKLQELTRKLKERVTILVKQKDVLshgekeeelKAMMHDLQITCSEMQQKVELLRYESEKLQQENSILRNEI-TT 1562
Cdd:pfam15921 80 LEEYSHQVKDLQRRLNESNELHEKQKFYL---------RQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLqNT 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1563 LNEEDSISNLKLGTLNGSQEEMWQKTETVKQENAAVQKmvenlkkqiselkIKNQQLDLEntELSQKNSQNQEKLQELNQ 1642
Cdd:pfam15921 151 VHELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQE-------------IRSILVDFE--EASGKKIYEHDSMSTMHF 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1643 RLTEMLCQKEKEPGNSALEEREQEKFNLKEELERCKVQSSTLVssleaelsEVKIQTHivqqenhllKDELEKMKQLHRC 1722
Cdd:pfam15921 216 RSLGSAISKILRELDTEISYLKGRIFPVEDQLEALKSESQNKI--------ELLLQQH---------QDRIEQLISEHEV 278
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1723 pDLSDFQQKISSVLSYNEKLLKEKEALSEELNScvdklaKSSLLEHRIATMkqeqkswEHQSASLKSQLvasQEKVQNLE 1802
Cdd:pfam15921 279 -EITGLTEKASSARSQANSIQSQLEIIQEQARN------QNSMYMRQLSDL-------ESTVSQLRSEL---REAKRMYE 341
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1803 DTVQNVNLQMSRMKSDLRVTQQEKEALKQEVMSLHKQLQNAGGKSWAPEiatHPSGLHNQQKRLSWDK-------LDHLM 1875
Cdd:pfam15921 342 DKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKRE---KELSLEKEQNKRLWDRdtgnsitIDHLR 418
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1876 NEEQQLLwQENERLQTMVQNTKAELTHSREkvRQLESnLLPKHQKHLNPSGTMNPTEQEKLSLKRECDQFQKEQ---SPA 1952
Cdd:pfam15921 419 RELDDRN-MEVQRLEALLKAMKSECQGQME--RQMAA-IQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKmtlESS 494
|
490 500 510 520
....*....|....*....|....*....|....*....|....
gi 1370465130 1953 NRKVSQMN-SLEQELETIHLENEGLKKKQVKLDEQLMEMQHLRS 1995
Cdd:pfam15921 495 ERTVSDLTaSLQEKERAIEATNAEITKLRSRVDLKLQELQHLKN 538
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
708-970 |
4.79e-03 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 42.05 E-value: 4.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 708 ELQGQAAVLKEAHHEATCRHEEEKKQLQVKLEEEkTHLQEKLRLQHE-MELKArLTQAQASFEREREGLQSSAWTEEKVr 786
Cdd:pfam07111 54 ELEGSQALSQQAELISRQLQELRRLEEEVRLLRE-TSLQQKMRLEAQaMELDA-LAVAEKAGQAEAEGLRAALAGAEMV- 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 787 gltqeleqfhqeqltslvekhtlekeelRKELLEKHQRELQEGREKMETECNRRTSQIEAQFQSDCQKvTERCESALQSL 866
Cdd:pfam07111 131 ----------------------------RKNLEEGSQRELEEIQRLHQEQLSSLTQAHEEALSSLTSK-AEGLEKSLNSL 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 867 EGRYRQELKDLQEQQREEksqwEFEKDEL--TQECAEAQELLKETLKR---EKTTSLVLTQEREMLEKTYKEHLNSMVVE 941
Cdd:pfam07111 182 ETKRAGEAKQLAEAQKEA----ELLRKQLskTQEELEAQVTLVESLRKyvgEQVPPEVHSQTWELERQELLDTMQHLQED 257
|
250 260
....*....|....*....|....*....
gi 1370465130 942 RQQLLQDLEDLRNVSETQQSLLSDQILEL 970
Cdd:pfam07111 258 RADLQATVELLQVRVQSLTHMLALQEEEL 286
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
638-1347 |
5.18e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 41.96 E-value: 5.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 638 ELVIEQMkEQHHRDICCLRLELEDKVRHYEKQLDETVVSCKKAQENMkqrhENETHTLEKQISDLKNEIAELQGQAAVLK 717
Cdd:TIGR00606 397 TLVIERQ-EDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTI----ELKKEILEKKQEELKFVIKELQQLEGSSD 471
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 718 E--------AHHEATCRHEEEKKQLQVKLEEEKTHLQEKLRLQHEmelKARLTQAQASFEREREGL-QSSAWTEEKVRGL 788
Cdd:TIGR00606 472 RileldqelRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRK---LRKLDQEMEQLNHHTTTRtQMEMLTKDKMDKD 548
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 789 TQ--ELEQFHQEQLTSLVEK-----------HTLEKE-ELRKELLEKHQRELQEGrEKMETECNRRTSQIEAQFQSDCQK 854
Cdd:TIGR00606 549 EQirKIKSRHSDELTSLLGYfpnkkqledwlHSKSKEiNQTRDRLAKLNKELASL-EQNKNHINNELESKEEQLSSYEDK 627
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 855 VTERCES-ALQSLEGRYRQELKDLQEQQREEKSQWEFEKDELTQECAEAQE---LLKETLKREKTTSLVLTQEREMLeKT 930
Cdd:TIGR00606 628 LFDVCGSqDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSccpVCQRVFQTEAELQEFISDLQSKL-RL 706
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 931 YKEHLNSMVVERQQLLQDLEDLRNVSETQQSllsdqILELKSSHKRELREREEVLCQAGASEQLASQRLERLEMEHDQER 1010
Cdd:TIGR00606 707 APDKLKSTESELKKKEKRRDEMLGLAPGRQS-----IIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEE 781
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1011 QEMMSKLLAMENIHKATCETADRERaemsteisRLQSKIKEMQQATSPLSMLQSGcQVIGEEEVEGDGALSLLQQGEQLL 1090
Cdd:TIGR00606 782 ESAKVCLTDVTIMERFQMELKDVER--------KIAQQAAKLQGSDLDRTVQQVN-QEKQEKQHELDTVVSKIELNRKLI 852
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1091 EENGDVLLSLQRAHEQAVKENVKMATEISRLQQRLQKLEPGLV-MSSCLDEPATEffGNTAEQTEQFLQQNRTKQVEGVT 1169
Cdd:TIGR00606 853 QDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTeVQSLIREIKDA--KEQDSPLETFLEKDQQEKEELIS 930
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1170 RRHVLSDLEDDEVRDLGSTGTSSV-QRQEVKIEESEASVEGFSELENSEETRTESWELKNQISQLQEQLMMLCADCDRAS 1248
Cdd:TIGR00606 931 SKETSNKKAQDKVNDIKEKVKNIHgYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQ 1010
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1249 EKKQDLLFDVSVLKK---KLKMLERIPEASPKY--KLLYEDVSRENDCLQEELRMMETRYDEALENNKELTAEVFRLQDE 1323
Cdd:TIGR00606 1011 KIQERWLQDNLTLRKrenELKEVEEELKQHLKEmgQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKE 1090
|
730 740
....*....|....*....|....
gi 1370465130 1324 LKkmeevTETFLSLEKSYDEVKIE 1347
Cdd:TIGR00606 1091 LR-----EPQFRDAEEKYREMMIV 1109
|
|
| Borrelia_P83 |
pfam05262 |
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins. |
659-832 |
5.44e-03 |
|
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins.
Pssm-ID: 114011 [Multi-domain] Cd Length: 489 Bit Score: 41.53 E-value: 5.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 659 LEDKVRHYEKQLDETVVSCKKAQENMKQRHEnethtlEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQVKL 738
Cdd:pfam05262 187 REDNEKGVNFRRDMTDLKERESQEDAKRAQQ------LKEELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQQEAKNL 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 739 EEEKTHLQEKLRLQHEMELKARLTQAQASFEREREGLQSSawTEEKVRGLTQELEQFHQEQltslvEKHTLEKEELRKEL 818
Cdd:pfam05262 261 PKPADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKA--KDHKAFDLKQESKASEKEA-----EDKELEAQKKREPV 333
|
170
....*....|....
gi 1370465130 819 LEKHQRELQEGREK 832
Cdd:pfam05262 334 AEDLQKTKPQVEAQ 347
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1518-1691 |
6.03e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 41.35 E-value: 6.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1518 EEELKAMMHDLQITCSEM---QQKVELLRYESEKLQQENSILRNEITTLNEE----------DSISNLKLGTLNGSQ--E 1582
Cdd:COG3883 36 QAELDALQAELEELNEEYnelQAELEALQAEIDKLQAEIAEAEAEIEERREElgeraralyrSGGSVSYLDVLLGSEsfS 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1583 EMWQKTETVKQENAAVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMlcQKEKEPGNSALEE 1662
Cdd:COG3883 116 DFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQ--EALLAQLSAEEAA 193
|
170 180
....*....|....*....|....*....
gi 1370465130 1663 REQEKFNLKEELERCKVQSSTLVSSLEAE 1691
Cdd:COG3883 194 AEAQLAELEAELAAAEAAAAAAAAAAAAA 222
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
346-543 |
6.44e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.98 E-value: 6.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 346 EEGIENSQEILKALDFSLDgninltELTLALENEllvtknsihQAALASFKAEIRHllERVDQVVREKEKLRSDLDKAEK 425
Cdd:TIGR02169 750 EQEIENVKSELKELEARIE------ELEEDLHKL---------EEALNDLEARLSH--SRIPEIQAELSKLEEEVSRIEA 812
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 426 lkslMASEVDDHHAAIERRNEYnLRKLDEEYKERIAALKNElRKEREQILQQAGKQRLELEQEIEKAKTEENYIRDRLAL 505
Cdd:TIGR02169 813 ----RLREIEQKLNRLTLEKEY-LEKEIQELQEQRIDLKEQ-IKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGD 886
|
170 180 190
....*....|....*....|....*....|....*...
gi 1370465130 506 SLKENSRLENELLENAEKLAEYENLTNKLQRNLENVLA 543
Cdd:TIGR02169 887 LKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKA 924
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
385-828 |
6.71e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.68 E-value: 6.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 385 NSIHQAALASFKAEIRHLLERVDQVVREKEKLRSDLDKAEKLKSLMASEVDDHHAAIERRNEYN----LRKLDEEYKERI 460
Cdd:COG4717 69 NLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQeleaLEAELAELPERL 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 461 AALKNEL--RKEREQILQQAGKQRLELEQEIEKAKTEENY-IRDRLALSLKENSRLENELLENAEKLAEYENLTNKLQRN 537
Cdd:COG4717 149 EELEERLeeLRELEEELEELEAELAELQEELEELLEQLSLaTEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEE 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 538 LENVLAEKfgdldpssaefflqeerltqmrneyerqcrVLQDQVDELQSELEEYRAQGRVLRLPLKNSPSEEVEANSGGI 617
Cdd:COG4717 229 LEQLENEL------------------------------EAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGV 278
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 618 --------EPEHGLGSEECNPLNMSIEAELVIEQMKEQHHRDICCLRLELEDKVRHYEKQLDETVVSCKKAQENMKQRHE 689
Cdd:COG4717 279 lflvlgllALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEE 358
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 690 NEThtlEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQVKLEEEKTHLQEKLRLQHEMELKARLTQAQASFE 769
Cdd:COG4717 359 LEE---ELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELE 435
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*....
gi 1370465130 770 RereglqssawTEEKVRGLTQELEQFHQEQLTSLVEKHTLEKEELRKELLEKHQRELQE 828
Cdd:COG4717 436 E----------LEEELEELEEELEELREELAELEAELEQLEEDGELAELLQELEELKAE 484
|
|
| DUF4670 |
pfam15709 |
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins ... |
728-903 |
6.77e-03 |
|
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins in this family are typically between 373 and 763 amino acids in length.
Pssm-ID: 464815 [Multi-domain] Cd Length: 522 Bit Score: 41.48 E-value: 6.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 728 EEEKKQLQVKLEEEKTHLQEKLRLQHEMELKARLTQAQASFEREREG----LQSSAWTEEKVRGLTQELEQFHQEQLTSl 803
Cdd:pfam15709 340 AERAEMRRLEVERKRREQEEQRRLQQEQLERAEKMREELELEQQRRFeeirLRKQRLEEERQRQEEEERKQRLQLQAAQ- 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 804 vEKHTLEKEELRKELLEKHQRELQEGREKMETEcNRRTSQIEAQFQSDCQKVTERCESalQSLE-GRYRQELKDLQEQQR 882
Cdd:pfam15709 419 -ERARQQQEEFRRKLQELQRKKQQEEAERAEAE-KQRQKELEMQLAEEQKRLMEMAEE--ERLEyQRQKQEAEEKARLEA 494
|
170 180
....*....|....*....|.
gi 1370465130 883 EEKSQWEFEKDELTQECAEAQ 903
Cdd:pfam15709 495 EERRQKEEEAARLALEEAMKQ 515
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
454-594 |
6.97e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 6.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 454 EEYKERIAALKNELrKEREQILQQAGKQRLELEQEIEKAKTEENYIRDRLALSLKENSRLENELLENAEKLAEYENLTNK 533
Cdd:COG4942 23 AEAEAELEQLQQEI-AELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEA 101
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1370465130 534 LQRNLENVL--AEKFGDLDPS----SAEFFLQEERLTQMRNEYERQcrvLQDQVDELQSELEEYRAQ 594
Cdd:COG4942 102 QKEELAELLraLYRLGRQPPLalllSPEDFLDAVRRLQYLKYLAPA---RREQAEELRADLAELAAL 165
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
797-927 |
7.01e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.30 E-value: 7.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 797 QEQLTSLVEKHTLEKEELRKELLEKHQRELQEGREKMETECNRRTSQIEAQfqsdcqkvtercESALQSLEGRYRQELKD 876
Cdd:PRK12704 37 EEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKL------------EKRLLQKEENLDRKLEL 104
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 1370465130 877 LQEQQRE---EKSQWEFEKDELTQECAEAQELLKETLKR-EKTTSLVLTQEREML 927
Cdd:PRK12704 105 LEKREEElekKEKELEQKQQELEKKEEELEELIEEQLQElERISGLTAEEAKEIL 159
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
397-503 |
7.75e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 41.61 E-value: 7.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 397 AEIRHLLERVDQVVREKEKLRSDLDKAEKLKslmASEVDDHHAAIERRneynLRKLDEEYKERIAALkNELRKEREQILQ 476
Cdd:COG0542 411 EELDELERRLEQLEIEKEALKKEQDEASFER---LAELRDELAELEEE----LEALKARWEAEKELI-EEIQELKEELEQ 482
|
90 100
....*....|....*....|....*..
gi 1370465130 477 QAGKqRLELEQEIEKAKTEENYIRDRL 503
Cdd:COG0542 483 RYGK-IPELEKELAELEEELAELAPLL 508
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1483-1914 |
7.77e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 41.64 E-value: 7.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1483 ELELEKTKLQEL-TRKLKERVTILVKQKDVLSHGEKEEELKAMMHDLQITCS-EMQQKVELLRYESEKLQqensilrnei 1560
Cdd:pfam15921 392 ELSLEKEQNKRLwDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQgQMERQMAAIQGKNESLE---------- 461
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1561 ttlneedsisnlKLGTLNGSQEEMWQKTETVKQENAAVQKMVENLKKQISELKI----KNQQLDLENTELSQKNSQNQEK 1636
Cdd:pfam15921 462 ------------KVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTAslqeKERAIEATNAEITKLRSRVDLK 529
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1637 LQELNQRLTEMLCQKEKEPGNSALEEREQEKFNLKEELERCKVQSSTLVSSLEAELSEVKIQTHIVQQENHLLKDELEKM 1716
Cdd:pfam15921 530 LQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEF 609
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1717 KQLHRCPD--LSDFQQKISSVLSYNEKLLKekeALSEELNSCVDKLAKSSLLEHRIATMKQEQKSWEHQSASLKSQLvas 1794
Cdd:pfam15921 610 KILKDKKDakIRELEARVSDLELEKVKLVN---AGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNF--- 683
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1795 QEKVQNLEDTVQNVNLQMSRMKSDLRVTQQEKEALK-------QEVMSLHKQLQNAGGK--SWAPEIATHPSGLHNQQKR 1865
Cdd:pfam15921 684 RNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEgsdghamKVAMGMQKQITAKRGQidALQSKIQFLEEAMTNANKE 763
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 1370465130 1866 lswdklDHLMNEEQQLLWQENERLQTMVQNTKAELTHSREKVRQLESNL 1914
Cdd:pfam15921 764 ------KHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKV 806
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
1582-1914 |
8.98e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 41.03 E-value: 8.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1582 EEMWQKTETVKQENAAVQKMVENLKKqisELKIKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMLcQKEKEPGNSALE 1661
Cdd:pfam07888 37 EECLQERAELLQAQEAANRQREKEKE---RYKRDREQWERQRRELESRVAELKEELRQSREKHEELE-EKYKELSASSEE 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1662 EREQEKFNLKEELERckvqsstlvsslEAELSEVKIQTHIVQQENHLLKDELEKMKqlhrcpdlsDFQQKISSvlsynek 1741
Cdd:pfam07888 113 LSEEKDALLAQRAAH------------EARIRELEEDIKTLTQRVLERETELERMK---------ERAKKAGA------- 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1742 LLKEKEALSEELNScvdKLAKSSLLEHRIATMKQEQKSWEHQSASLKSQLVASQEKVQNLEDTVQNVNLQMSRMKSDLRV 1821
Cdd:pfam07888 165 QRKEEEAERKQLQA---KLQQTEEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAENEALLEELRS 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 1822 TQQEKEALKQEVMSLHKQLQNAGGKSWAPEIATHPSGLHNQQKRLSWDKLDHLMNEEQQLLWQENERLQTMVQNTKAELT 1901
Cdd:pfam07888 242 LQERLNASERKVEGLGEELSSMAAQRDRTQAELHQARLQAAQLTLQLADASLALREGRARWAQERETLQQSAEADKDRIE 321
|
330
....*....|...
gi 1370465130 1902 HSREKVRQLESNL 1914
Cdd:pfam07888 322 KLSAELQRLEERL 334
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
398-536 |
9.80e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 41.07 E-value: 9.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 398 EIRHLLERVDQVVREKEKLRSDLDKAEKLKSLmasEVDDH--------HAAIERRNEYNLRKLD-----------EEYKE 458
Cdd:PRK05771 101 EIKELEEEISELENEIKELEQEIERLEPWGNF---DLDLSlllgfkyvSVFVGTVPEDKLEELKlesdvenveyiSTDKG 177
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370465130 459 RIAAL---KNELRKEREQILQQAGKQRLELeQEIEKAKTEENYIRDRLALSLKENSRLENELLENAEKLAE-----YENL 530
Cdd:PRK05771 178 YVYVVvvvLKELSDEVEEELKKLGFERLEL-EEEGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEellalYEYL 256
|
....*.
gi 1370465130 531 TNKLQR 536
Cdd:PRK05771 257 EIELER 262
|
|
| |
