|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
91-462 |
2.51e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 66.62 E-value: 2.51e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 91 AEVAELKAEKENSEAQVENAQRIQVR---QLAEMQATVRSLEAEKQSAN----LRAERLEKELQSSSEQNTFLINKLHKA 163
Cdd:TIGR02168 165 AGISKYKERRKETERKLERTRENLDRledILNELERQLKSLERQAEKAErykeLKAELRELELALLVLRLEELREELEEL 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 164 EREINTLSSKVKELkhSNKLEITDIKLETAR-AKSELERERNKIQSELDGLQSDNEILKAAVEHHKVLLVEKDRELIRkV 242
Cdd:TIGR02168 245 QEELKEAEEELEEL--TAELQELEEKLEELRlEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEE-L 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 243 QAAKEEGYQKLVVLQDEKLELENRLADLEKMKvehdvwrQSEKDQYEEKLRASQMAEEItRKELQsvrlklqqqivtiEN 322
Cdd:TIGR02168 322 EAQLEELESKLDELAEELAELEEKLEELKEEL-------ESLEAELEELEAELEELESR-LEELE-------------EQ 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 323 AEKEKNENSDLKQQISSLQIQVTSLAQSENDLlnsnqmlKEMVERLKQECRNFRSQAEKAQLEAEKTLEEKQIQWLEEKH 402
Cdd:TIGR02168 381 LETLRSKVAQLELQIASLNNEIERLEARLERL-------EDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQ 453
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 403 KLHERITDREEKYNQAKEKLQRAAIAQKkrkslheNKLKRLQEKVEVLEAKKEELETENQ 462
Cdd:TIGR02168 454 EELERLEEALEELREELEEAEQALDAAE-------RELAQLQARLDSLERLQENLEGFSE 506
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
4-548 |
2.68e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.42 E-value: 2.68e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 4 EKYRAVYNKLR-YEHTFLKSEFEHQKEEYARI------LDEGKIKYESEIARLEEDKEELRNQLLNVDLTKD-------- 68
Cdd:COG1196 213 ERYRELKEELKeLEAELLLLKLRELEAELEELeaeleeLEAELEELEAELAELEAELEELRLELEELELELEeaqaeeye 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 69 -SKRVEQLAREKVYLCQKLKGLEAEVAELKAEKENSEAQVENAQRIQVRQLAEMQATVRSLEAEKQSANLRAERLEKELQ 147
Cdd:COG1196 293 lLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEA 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 148 SSSEQNTFLINKLHKAEREINTLSSKVKELKHsNKLEITDIKLETARAKSELERERNKIQSELDGLQSDNEILKAAVEHH 227
Cdd:COG1196 373 ELAEAEEELEELAEELLEALRAAAELAAQLEE-LEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEE 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 228 KVLLVEKDRELIRKVQAAKE--EGYQKLVVLQDEKLELENRLADLEKMKVEH-----DVWRQSEKDQYEEKLRASQMA-- 298
Cdd:COG1196 452 AELEEEEEALLELLAELLEEaaLLEAALAELLEELAEAAARLLLLLEAEADYegfleGVKAALLLAGLRGLAGAVAVLig 531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 299 -EEITRKELQSVRLKLQQQIVTiENAEKEKNENSDLKQQISSLQIQVTSLAQSENDLLNSNQMLKEMVERLKQECRNFRS 377
Cdd:COG1196 532 vEAAYEAALEAALAAALQNIVV-EDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLRE 610
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 378 QAEKAQLEAEKTLEEKQIQWLEEKHKLHER--ITDREEKYNQAKEKLQRAAIAQKKRKSLHENKLKRLQEKVEVLEAKKE 455
Cdd:COG1196 611 ADARYYVLGDTLLGRTLVAARLEAALRRAVtlAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAE 690
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 456 ELETENQVLNRQNvpfEDYTRLQKRLKDIQRRHNEFRSLILVPNMPPTASINPVSFQSSAMVPSMELPFPPHMQEEQHQR 535
Cdd:COG1196 691 EELELEEALLAEE---EEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELER 767
|
570
....*....|...
gi 1370462044 536 ELSLLRKRLEELE 548
Cdd:COG1196 768 ELERLEREIEALG 780
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
90-367 |
1.22e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.11 E-value: 1.22e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 90 EAEVAE----LKAEKENSEAQV---------------ENAQRIQVRQLAEMQATVRSLEAEKQSANLRAERLEKELQSSS 150
Cdd:COG1196 208 QAEKAEryreLKEELKELEAELlllklreleaeleelEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQ 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 151 EQNTFLINKLHKAEREINTLSSKVKELKhSNKLEITDIKLETARAKSELERERNKIQSELDGLQSDNEILKAAVEHHKVL 230
Cdd:COG1196 288 AEEYELLAELARLEQDIARLEERRRELE-ERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEA 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 231 LVEKDRELIRKVQAAKEEgYQKLVVLQDEKLELENRLADLEKMKVEHDVWRQSEKDQYEEKLRASQMAEEITRKELQSVR 310
Cdd:COG1196 367 LLEAEAELAEAEEELEEL-AEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALE 445
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 1370462044 311 LKLQQQIVTIENAEKEKNENSDLKQQISSLQIQVTSLAQSENDLLNSNQMLKEMVER 367
Cdd:COG1196 446 EAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEAD 502
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
4-278 |
1.11e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.06 E-value: 1.11e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 4 EKYRAVYNKLR-YEHTFLKSEFEHQKEEYARILDEGK------IKYESEIARLEEDKEELRNQLLNVDltkdsKRVEQLA 76
Cdd:TIGR02168 213 ERYKELKAELReLELALLVLRLEELREELEELQEELKeaeeelEELTAELQELEEKLEELRLEVSELE-----EEIEELQ 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 77 REKVYLCQKLKGLEAEVAELKAEKENSEAQVENAQRIQV---RQLAEMQATVRSLEAEKQSANLRAERLEKELQSSSEQN 153
Cdd:TIGR02168 288 KELYALANEISRLEQQKQILRERLANLERQLEELEAQLEeleSKLDELAEELAELEEKLEELKEELESLEAELEELEAEL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 154 TFLINKLHKAEREINTLSSKVKELKH---SNKLEITDIKLETARAKSELERERNKIQSELDGLQS-DNEILKAAVEHHKV 229
Cdd:TIGR02168 368 EELESRLEELEEQLETLRSKVAQLELqiaSLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEaELKELQAELEELEE 447
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 1370462044 230 LLVEKDRELIRKVQAAK------EEGYQKLVVLQDEKLELENRLADLEKMKVEHD 278
Cdd:TIGR02168 448 ELEELQEELERLEEALEelreelEEAEQALDAAERELAQLQARLDSLERLQENLE 502
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
191-485 |
2.54e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.79 E-value: 2.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 191 ETARAKSELERERNKIQSELDGLQSDNEILKAAVEHHKVLLVEKDRELIRKVQAAKEEGYQKL-VVLQDEKLELENRLAD 269
Cdd:COG1196 210 EKAERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELrLELEELELELEEAQAE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 270 LEKMKVEHDvwrQSEKDQYEEKLRASQMAEEITRKELQSVRLKLQQQivtiENAEKEKNENSDLKQQISSLQIQVTSLAQ 349
Cdd:COG1196 290 EYELLAELA---RLEQDIARLEERRRELEERLEELEEELAELEEELE----ELEEELEELEEELEEAEEELEEAEAELAE 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 350 SENDLLNSNQMLKEMVERLKQEcRNFRSQAEKAQLEAEKTLEEKQIQWLEEKHKLHERITDREEKYNQAKEKLQRAAIAQ 429
Cdd:COG1196 363 AEEALLEAEAELAEAEEELEEL-AEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEE 441
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 1370462044 430 KKRKSLHENKLKRLQEKVEVLEAKKEELETENQVLNRQNVPFEDYTRLQKRLKDIQ 485
Cdd:COG1196 442 EALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLL 497
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
236-547 |
3.65e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.14 E-value: 3.65e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 236 RELIRKVQAAKEEGYQKLVVLQDEKLELENRLADLEKMKVEHDVWRQSEKDQYEEKLRASQMAEEITRkELQSVRLKLQQ 315
Cdd:TIGR02168 680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEE-RIAQLSKELTE 758
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 316 QIVTIENAEKEKNENSDLKQQISSLQIQV-TSLAQSENDLLNSNQMLKEMVERLKQECRNFRSQAEK-AQLEAEKTLEEK 393
Cdd:TIGR02168 759 LEAEIEELEERLEEAEEELAEAEAEIEELeAQIEQLKEELKALREALDELRAELTLLNEEAANLRERlESLERRIAATER 838
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 394 QIQWLEEKhklHERITDREEKYNQAKEKLQRAAIAQKKRKSLHENKLKRLQEKVEVLEAKKEELETENQVLNRQNVPFED 473
Cdd:TIGR02168 839 RLEDLEEQ---IEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRR 915
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1370462044 474 -YTRLQKRLKDIQRRHNEFRSLILvpnmpPTASINPVSFQSSAMVPsMELPFPPHMQEEQHQRELSLLRKRLEEL 547
Cdd:TIGR02168 916 eLEELREKLAQLELRLEGLEVRID-----NLQERLSEEYSLTLEEA-EALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
190-487 |
4.01e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.15 E-value: 4.01e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 190 LETARAKSELERERNKIQSELDGLQSDNEILKAAVE--HHKVLLVEKDRELI----RKVQAAKEEGYQKLVVLQDEKLEL 263
Cdd:TIGR02169 677 QRLRERLEGLKRELSSLQSELRRIENRLDELSQELSdaSRKIGEIEKEIEQLeqeeEKLKERLEELEEDLSSLEQEIENV 756
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 264 ENRLADLEKmkvehdvwrqsEKDQYEEKLRASQMA-EEITRKELQSVRLKLQQQIVTIENAEKEKNEN-SDLKQQISSLQ 341
Cdd:TIGR02169 757 KSELKELEA-----------RIEELEEDLHKLEEAlNDLEARLSHSRIPEIQAELSKLEEEVSRIEARlREIEQKLNRLT 825
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 342 IQVTSLAQSENDLLNSNQMLKEMVERLKQECRNFRSQAEKAQLEAEKTleEKQIQWLEEKHK-LHERITDREEKYNQAKE 420
Cdd:TIGR02169 826 LEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEEL--EAALRDLESRLGdLKKERDELEAQLRELER 903
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1370462044 421 KLQRAAIAQKKRKSLhenkLKRLQEKVEVLEAKKEELETENQVLNRQNVPFEDYTRLQKRLKDIQRR 487
Cdd:TIGR02169 904 KIEELEAQIEKKRKR----LSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEE 966
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
28-492 |
2.96e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.52 E-value: 2.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 28 KEEYARILDEGKIKYESEIARLEEDKEELRNQLLNVDLTKDSKRVEQLAREKVYLCQKLKGLEAEVAELKAEKENSEAQV 107
Cdd:PTZ00121 1273 KAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEA 1352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 108 ENAQRIQVRQLAEMQATVRSLEAEKQSANLRAERLEK-----ELQSSSEQNTFLINKLHKAEREINTLSSKVKELKHSNK 182
Cdd:PTZ00121 1353 EAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEkkkadEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKK 1432
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 183 LEITDIKLETARAKSELERERNKIQSELDGLQSDNEILKAAVEHHKVLLVEKDRELIRKVQAAKEEGYQKLVVLQDEKLE 262
Cdd:PTZ00121 1433 ADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKA 1512
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 263 LENRLADLEKMKVEHDVWRQSEKDQYEEKLRASQMAEEITRKElqsvRLKLQQQIVTIENAEKEKNEN------SDLKQQ 336
Cdd:PTZ00121 1513 DEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAE----ELKKAEEKKKAEEAKKAEEDKnmalrkAEEAKK 1588
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 337 ISSLQIQVTSLAQSENDLLNSNQMLKEMVERLKQEcRNFRSQAEKAQLEAEKTLEEKQIQWLEEKHKLHERITDREE--- 413
Cdd:PTZ00121 1589 AEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAE-ELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAeea 1667
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 414 -KYNQAKEKLQRAAIAQKKRKSLHENKLKRLQEKVEVLEAKK---EELETENQVLNRQNVPFEDYTRLQKRLKDIQRRHN 489
Cdd:PTZ00121 1668 kKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKkeaEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAE 1747
|
...
gi 1370462044 490 EFR 492
Cdd:PTZ00121 1748 EAK 1750
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
105-331 |
4.07e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.38 E-value: 4.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 105 AQVENAQRIQvRQLAEMQATVRSLEAEKQSANLRAERLEKELQSSSEQNTFLINKLHKAEREINTLSSKVKELKHsnklE 184
Cdd:COG4942 17 AQADAAAEAE-AELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK----E 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 185 ITDIKLETARAKSELER-----ERNKIQSELDGLQSDNEILKAAVEHHKV-LLVEKDRELIRKVQAAKEEGYQKLVVLQD 258
Cdd:COG4942 92 IAELRAELEAQKEELAEllralYRLGRQPPLALLLSPEDFLDAVRRLQYLkYLAPARREQAEELRADLAELAALRAELEA 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1370462044 259 EKLELENRLADLEKMKVEHDVwRQSEKDQYEEKLRASQMAEEITRKELQSVRLKLQQQIVTIENAEKEKNENS 331
Cdd:COG4942 172 ERAELEALLAELEEERAALEA-LKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2-461 |
4.58e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.55 E-value: 4.58e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 2 EVEKYRAVYNKLRYEHTFLKSEFEHQKEEYaRILDEGKIKYESEIARLEEDKEELRNQLLNVDLTKDSKRVEQLAREkvy 81
Cdd:COG1196 261 ELAELEAELEELRLELEELELELEEAQAEE-YELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELE--- 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 82 lcQKLKGLEAEVAELKAEKENSEAQVENAQRIQVRQLAEMQATVRSLEAEKQSANLRAERLEKELQSSSEQNTFLINKLH 161
Cdd:COG1196 337 --EELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLE 414
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 162 KAEREINTLSSKVKELKHSNKLEITDIKLETARAKSELERERNKIQSELDGLQSDNEILKAAVEHHKVLLVEKDRELIRK 241
Cdd:COG1196 415 RLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLL 494
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 242 VQAAKEEGYQKL---------------------VVLQDEKLE---LENRLADLEKMKVEHDVWRQSEKDQYEEK------ 291
Cdd:COG1196 495 LLLEAEADYEGFlegvkaalllaglrglagavaVLIGVEAAYeaaLEAALAAALQNIVVEDDEVAAAAIEYLKAakagra 574
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 292 ----------------------------LRASQMAEEITRKELQSVRLKLQQQIVTIENAEKEKNENSDLKQQISSLQIQ 343
Cdd:COG1196 575 tflpldkiraraalaaalargaigaavdLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGE 654
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 344 VTSLAQSENDLLNSNQMLKEMVERLKQECRNFRSQAEKAQLEAEKTLEEKQIQWLEEKHKLHERITDREEKYNQAKEKLQ 423
Cdd:COG1196 655 GGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAER 734
|
490 500 510 520
....*....|....*....|....*....|....*....|....*....
gi 1370462044 424 RAAIAQKKRKSLHEN-----------KLKRLQEKVEVLEAKKEELETEN 461
Cdd:COG1196 735 EELLEELLEEEELLEeealeelpeppDLEELERELERLEREIEALGPVN 783
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
42-427 |
6.11e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.30 E-value: 6.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 42 YESEIARLEEDKEELRNQLLNVDLTKDSKRvEQLARekvylcqklkgleaevaeLKAEKENSEAQVENAQRIQVRQLAEM 121
Cdd:TIGR02169 168 FDRKKEKALEELEEVEENIERLDLIIDEKR-QQLER------------------LRREREKAERYQALLKEKREYEGYEL 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 122 QATVRSLEAEKQSANLRAERLEKELQSSSEQNTFLINKLHKAEREINTLSSKVKELKHSnklEITDIKLETARAKSELER 201
Cdd:TIGR02169 229 LKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEE---EQLRVKEKIGELEAEIAS 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 202 ERNKIQSELDGLQ-SDNEILKAAVEHHKVLL-VEKDRELIRKVQAAKEEGYQKLVVLQDEKLELENRLADLEKmkvEHDV 279
Cdd:TIGR02169 306 LERSIAEKERELEdAEERLAKLEAEIDKLLAeIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDK---EFAE 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 280 WRQsEKDQYEEKLraSQMAEEITRKELQSVRLKLQQQIVTIENAEKeKNENSDLKQQISSLQIQVTSLAQSENDLLNSNQ 359
Cdd:TIGR02169 383 TRD-ELKDYREKL--EKLKREINELKRELDRLQEELQRLSEELADL-NAAIAGIEAKINELEEEKEDKALEIKKQEWKLE 458
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1370462044 360 MLKEMVERLKQECrnFRSQAEKAQLEAEKTLEEKQIQWLEEKhklhERITDREEKYNQAKEKLQRAAI 427
Cdd:TIGR02169 459 QLAADLSKYEQEL--YDLKEEYDRVEKELSKLQRELAEAEAQ----ARASEERVRGGRAVEEVLKASI 520
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
25-458 |
6.28e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 49.37 E-value: 6.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 25 EHQKEEYARILDEGKIKYEsEIARLEEDKEELRNQLLNVDLTKDSKRVEQLAREKVYLCQKLKGLEAEVAELKAEKENSE 104
Cdd:PTZ00121 1294 EAKKAEEKKKADEAKKKAE-EAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKK 1372
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 105 AQVENAQRIQVRQLAEMQATVRSLEAEKQSANLRAERLEK---------ELQSSSEQNTFLINKLHKAEREINTLSSKvK 175
Cdd:PTZ00121 1373 KEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKaaaakkkadEAKKKAEEKKKADEAKKKAEEAKKADEAK-K 1451
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 176 ELKHSNKLEITDIKLETARAKSELERERNKIQSELDGLQSDNEILKAAVEHHKVLLVEKDRELIRKVQAAK--EEGYQKL 253
Cdd:PTZ00121 1452 KAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKkaDEAKKAE 1531
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 254 VVLQDEKLELENRLADLEKMKVEHDVWRQSEKDQYEEKLRASQMAEEITRKELQSVRLKLQQQIVTIENAEKEKNENSDL 333
Cdd:PTZ00121 1532 EAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEE 1611
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 334 KQQISSLQIQVTSLAQSENDLLNSNQMLKEMVERLK--------QECRNFRSQAEKAQLEAEKTLEEKQIQWLEEKHKLH 405
Cdd:PTZ00121 1612 AKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKkaeelkkaEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAA 1691
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 1370462044 406 ERITDREEKYNQAKEKLQRAAIAQKK----RKSLHENKLKRLQEKVEVLEAKKEELE 458
Cdd:PTZ00121 1692 EALKKEAEEAKKAEELKKKEAEEKKKaeelKKAEEENKIKAEEAKKEAEEDKKKAEE 1748
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
22-494 |
6.82e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 49.27 E-value: 6.82e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 22 SEFEHQKEEYARILDEGKIKYES------EIARLEEDKEELRNqllnvDLTKDSKRVEQLAREKVYLCQKLKGLEAEVAE 95
Cdd:PRK02224 223 ERYEEQREQARETRDEADEVLEEheerreELETLEAEIEDLRE-----TIAETEREREELAEEVRDLRERLEELEEERDD 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 96 LKAEKENSEAQVE---------NAQRIQVRQ-LAEMQATVRSLEAEKQSANLRAERLEKELQSSSEQNTFLINKLHKAER 165
Cdd:PRK02224 298 LLAEAGLDDADAEavearreelEDRDEELRDrLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEARE 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 166 EINTLSSKVKELKH-----SNKLEITDIKLETARAKSE-LERERNKIQSELDGLQSDNEILKAAVEHHKVLL-------- 231
Cdd:PRK02224 378 AVEDRREEIEELEEeieelRERFGDAPVDLGNAEDFLEeLREERDELREREAELEATLRTARERVEEAEALLeagkcpec 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 232 ------------VEKDRELIRKVQAAKEEgyqklvvLQDEKLELENRLADLEKM-KVEHDVWRQSEKDQYEEKLRASQmA 298
Cdd:PRK02224 458 gqpvegsphvetIEEDRERVEELEAELED-------LEEEVEEVEERLERAEDLvEAEDRIERLEERREDLEELIAER-R 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 299 EEITRKELQSVRLKLQQQIVTIENAEKEKnENSDLKQQISSLQIQVTSLaqsendllnsNQMLKEMVERLKQECRNFRSQ 378
Cdd:PRK02224 530 ETIEEKRERAEELRERAAELEAEAEEKRE-AAAEAEEEAEEAREEVAEL----------NSKLAELKERIESLERIRTLL 598
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 379 AEKAQLEAE-KTLEEKQIQWLEEKHKLHERITDREEKYNQAKEKLQRAAIAQ-KKRKSLHENKLKRLQEKVEVLEAKKEE 456
Cdd:PRK02224 599 AAIADAEDEiERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIEEaREDKERAEEYLEQVEEKLDELREERDD 678
|
490 500 510
....*....|....*....|....*....|....*...
gi 1370462044 457 LETENQVLNRQnvpFEDYTRLQKRLKDIQRRHNEFRSL 494
Cdd:PRK02224 679 LQAEIGAVENE---LEELEELRERREALENRVEALEAL 713
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1-495 |
9.14e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.98 E-value: 9.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 1 MEVEKYRAVYNKLRYEHTFLKSEFEHQKEEYARILDEGKIKYESEIARLEEDKEELRNQLLNVDLTKDSKRVEQLAREKV 80
Cdd:PTZ00121 1359 AEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKK 1438
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 81 YLCQKLKGLEA-EVAELKAEKENSEAQVENAQRI-QVRQLAEMQATVRSLEAEKQSANLRAERLEKELQSSSEQntfliN 158
Cdd:PTZ00121 1439 KAEEAKKADEAkKKAEEAKKAEEAKKKAEEAKKAdEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKA-----D 1513
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 159 KLHKAEReintlSSKVKELKhsnkleitdiKLETARAKSELERERNKiqseldglqsdneilKAAVEHHKVLLVEKDREL 238
Cdd:PTZ00121 1514 EAKKAEE-----AKKADEAK----------KAEEAKKADEAKKAEEK---------------KKADELKKAEELKKAEEK 1563
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 239 IRKVQAAKEEGYQKLVVLQDEKLEL--ENRLADLEKMKVEHDVWRQSE-KDQYEEKLRASQM-AEEITRKELQSVRLKLQ 314
Cdd:PTZ00121 1564 KKAEEAKKAEEDKNMALRKAEEAKKaeEARIEEVMKLYEEEKKMKAEEaKKAEEAKIKAEELkKAEEEKKKVEQLKKKEA 1643
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 315 QQIVTIENAEKEKNENSDLKQQISSlqiqvtslaQSENDLLNSNQMLKEMVERLKQECRNFRSQAEKAQLEAEKTLEEKQ 394
Cdd:PTZ00121 1644 EEKKKAEELKKAEEENKIKAAEEAK---------KAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEE 1714
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 395 IQWLEEKHKLHERITDREEKYNQAKEKLQRAAIAQKKrkslHENKLKRLQEKVEVLEAKKEELETENQVLNRQNVPFEDY 474
Cdd:PTZ00121 1715 KKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKK----DEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDE 1790
|
490 500
....*....|....*....|.
gi 1370462044 475 TRLQKRLKDIQRRHNEFRSLI 495
Cdd:PTZ00121 1791 KRRMEVDKKIKDIFDNFANII 1811
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
3-337 |
1.04e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 48.58 E-value: 1.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 3 VEKYRAVYNKLRYEHTFLKSEFEHQKEEYARILDegkIKYESEIARL---EEDK--EELRNQLLNVD--LTKDSKRVEQL 75
Cdd:pfam15921 512 IEATNAEITKLRSRVDLKLQELQHLKNEGDHLRN---VQTECEALKLqmaEKDKviEILRQQIENMTqlVGQHGRTAGAM 588
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 76 AREKVYLCQKLKGLEAEVAELKAEKENSEAQVEnaqriqvrqlaEMQATVRSLEAEK-QSANLRAERLeKELQSSSEQNT 154
Cdd:pfam15921 589 QVEKAQLEKEINDRRLELQEFKILKDKKDAKIR-----------ELEARVSDLELEKvKLVNAGSERL-RAVKDIKQERD 656
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 155 FLINKLHKAEREINTLSSKVKELKH-----SNKLEIT--DIKLETARAKSELERERNKIQSeLDGlqSDNEILKAAVEHH 227
Cdd:pfam15921 657 QLLNEVKTSRNELNSLSEDYEVLKRnfrnkSEEMETTtnKLKMQLKSAQSELEQTRNTLKS-MEG--SDGHAMKVAMGMQ 733
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 228 KVLLVEKDR-----ELIRKVQAAKEEGYQKLVVLQDEKLELENRLADL----EKMKVEHDVWRQSEKDQYEE-------- 290
Cdd:pfam15921 734 KQITAKRGQidalqSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVatekNKMAGELEVLRSQERRLKEKvanmeval 813
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 1370462044 291 ---KLRASQMAEEITRKELQSVRLKLQQQIVTIENAEKEKNENSDLKQQI 337
Cdd:pfam15921 814 dkaSLQFAECQDIIQRQEQESVRLKLQHTLDVKELQGPGYTSNSSMKPRL 863
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
35-495 |
1.31e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.13 E-value: 1.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 35 LDEGKIKYESEIARLEEDKEELRNQLLNVDLTKDS--KRVEQLAREKVYLCQKL-----KGLEAEVAELKAEKENSEAQV 107
Cdd:TIGR02168 377 LEEQLETLRSKVAQLELQIASLNNEIERLEARLERleDRRERLQQEIEELLKKLeeaelKELQAELEELEEELEELQEEL 456
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 108 ENAQR---IQVRQLAEMQATVRSLEAEKQSANLRA---ERLEKELQSSSEQNTFLINKLHKAEREINTLSSKVK------ 175
Cdd:TIGR02168 457 ERLEEaleELREELEEAEQALDAAERELAQLQARLdslERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISvdegye 536
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 176 ---------------------------ELKHSNKLEITDIKLETARAKSELERERNKIQSELDGLQSDNEILKAAVEHHK 228
Cdd:TIGR02168 537 aaieaalggrlqavvvenlnaakkaiaFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRK 616
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 229 --------VLLVEKDRELIRkvQAAKEEGYQKLVVLQDEKLELENRLADLEKMKVEHDVWRQSEKDQYEEKLRASQMAEE 300
Cdd:TIGR02168 617 alsyllggVLVVDDLDNALE--LAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIA 694
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 301 ITRKELQSVRLKLQQQIVTIENAEKEKNEnsdLKQQISSLQIQVTSLAQSENDLLNSNQMLKEMVERLKQECRNFRSQAE 380
Cdd:TIGR02168 695 ELEKALAELRKELEELEEELEQLRKELEE---LSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLE 771
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 381 KAQLEAE------KTLEEKQIQWLEEKHKLHERITDREEKYNQAKEKLQRAAIAQKKRKSLHENKLKRLQEKVEVLEAKK 454
Cdd:TIGR02168 772 EAEEELAeaeaeiEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELS 851
|
490 500 510 520
....*....|....*....|....*....|....*....|.
gi 1370462044 455 EELETENQVLNRQNVPFEDYTRLQKRLKDIQRRHNEFRSLI 495
Cdd:TIGR02168 852 EDIESLAAEIEELEELIEELESELEALLNERASLEEALALL 892
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
45-215 |
1.32e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.37 E-value: 1.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 45 EIARLEEDKEELRNQLLNVDLTKDSKRVEQLAREkvylcqkLKGLEAEVAELKAEKENSEAQVENAQR-----------I 113
Cdd:COG4913 263 RYAAARERLAELEYLRAALRLWFAQRRLELLEAE-------LEELRAELARLEAELERLEARLDALREeldeleaqirgN 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 114 QVRQLAEMQATVRSLEAEKQSANLRAERLEKELQSSSEQNTFLINKLHKAEREINTLSSKVKELKHSNKLEITDIKleta 193
Cdd:COG4913 336 GGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAE---- 411
|
170 180
....*....|....*....|..
gi 1370462044 194 RAKSELERERNKIQSELDGLQS 215
Cdd:COG4913 412 AALRDLRRELRELEAEIASLER 433
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
23-429 |
1.42e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.84 E-value: 1.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 23 EFEHQKEEYARILDEgKIKYESEIARLEEDKEELRNQLlnvDLTKDSKRVEQLAREKVYLCQKLKGLEAEVAELKAEKEN 102
Cdd:COG4717 82 EAEEKEEEYAELQEE-LEELEEELEELEAELEELREEL---EKLEKLLQLLPLYQELEALEAELAELPERLEELEERLEE 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 103 SEAQVENAQRIQVRQLAEMQATVRSLEAEKQSANLRAERLEKELQSSSEQNTFLINKLHKAEREINTLSSKVKELKHSNK 182
Cdd:COG4717 158 LRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELE 237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 183 LEITDIKLETARAKSELERERNKIQSELDGLQSDNEILKAAVEHHKVLLVEKDRELIRKVQAAKEEGYQKLVVLQDEKLE 262
Cdd:COG4717 238 AAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELE 317
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 263 LENRLADLEKMKVEHDVWRQSEKDQYEEKLRASQMAEEITRKELQSVRLKLQQQIV------------TIENAEKEKNEN 330
Cdd:COG4717 318 EEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAallaeagvedeeELRAALEQAEEY 397
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 331 SDLKQQISSLQIQVTSLAQSENDLLNSNQ--MLKEMVERLKQECRnfRSQAEKAQLEAEKTLEEKQIQWLEEKHKLHERI 408
Cdd:COG4717 398 QELKEELEELEEQLEELLGELEELLEALDeeELEEELEELEEELE--ELEEELEELREELAELEAELEQLEEDGELAELL 475
|
410 420
....*....|....*....|.
gi 1370462044 409 TDREEKYNQAKEKLQRAAIAQ 429
Cdd:COG4717 476 QELEELKAELRELAEEWAALK 496
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
41-477 |
1.65e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 48.04 E-value: 1.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 41 KYESEIARLEEDKEELRNQLLNVDLTKDSKRVEQLAREKVYLCQKLKGLEAEVAELKAEKENSEAQVENAQRIQVRQLAE 120
Cdd:TIGR00618 271 ELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTL 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 121 MQATVRSLEAEKQSANLRAER-----LEKELQSSSEQNTFLINKLHKAEREINTLSSKV-KELKHSNKLEITDIKLETAR 194
Cdd:TIGR00618 351 HSQEIHIRDAHEVATSIREIScqqhtLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQaTIDTRTSAFRDLQGQLAHAK 430
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 195 AKSELERERNKIQSELDGLQSDNEILK--AAVEHHKVLLVEKDRE-----LIRKVQAAKEEGYQKLVVLQDEKLELENRL 267
Cdd:TIGR00618 431 KQQELQQRYAELCAAAITCTAQCEKLEkiHLQESAQSLKEREQQLqtkeqIHLQETRKKAVVLARLLELQEEPCPLCGSC 510
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 268 ADLEKMKVEHDVW--RQSEKDQYEEKLRASQMAEEITRKELQSVRLKLQQqivTIENAEKEKNENSDLKQQISSLQIQVT 345
Cdd:TIGR00618 511 IHPNPARQDIDNPgpLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRAS---LKEQMQEIQQSFSILTQCDNRSKEDIP 587
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 346 SLAQSENDLLNSNQMLKEMVERLKQECRNFRSQAEKAQLEAEKTLEEKQIQWLEEKHKLHERITDREEKYNQAKEKLQRA 425
Cdd:TIGR00618 588 NLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSI 667
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|..
gi 1370462044 426 AIAQKKRKSLHENKLKRLQEKVEVLEAKKEELETENQVLNRQNVPFEDYTRL 477
Cdd:TIGR00618 668 RVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDRE 719
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
84-247 |
7.20e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.78 E-value: 7.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 84 QKLKGLEAEVAELKAEkeNSEAQVENAQRIQVRQLAEMQATVRSLEAEKQSANLRAERLEKELQSSSEQNTFLIN----- 158
Cdd:COG3206 189 KELEEAEAALEEFRQK--NGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQspviq 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 159 ----KLHKAEREINTLSSK-------VKELKHSNKLEITDIKLETARAKSELERERNKIQSELDGLQSDNEILKAAVEHH 227
Cdd:COG3206 267 qlraQLAELEAELAELSARytpnhpdVIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAEL 346
|
170 180
....*....|....*....|
gi 1370462044 228 KVLLVEkDRELIRKVQAAKE 247
Cdd:COG3206 347 PELEAE-LRRLEREVEVARE 365
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
69-467 |
1.24e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 45.11 E-value: 1.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 69 SKRVEQLAREKVYLCQKLKGLEAEVAELKAEKENSEAQVENAQRIQVRQL-AEMQATVRSLEAEKQSANLRAERLEKELQ 147
Cdd:pfam15921 223 SKILRELDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQHQDRIEQLiSEHEVEITGLTEKASSARSQANSIQSQLE 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 148 SSSEQ----NTFLINKLHKAEREINTLSSKVKELKHSNKLEITDIKLETARAKSELER---ERNKIQSELDGLqsDNEIL 220
Cdd:pfam15921 303 IIQEQarnqNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEartERDQFSQESGNL--DDQLQ 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 221 KAAVEHHK-----VLLVEKDRELIRKVQAAKEEGYQKLVVLQDEKLELENRLADLEKMK------VEHDVWRQSEKDQYE 289
Cdd:pfam15921 381 KLLADLHKrekelSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKsecqgqMERQMAAIQGKNESL 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 290 EKLRASQMAEEITRKELQSVRLKLQQQIVTIENAEKEKNE---------------NSDLKQQISSLQIQVTSL------- 347
Cdd:pfam15921 461 EKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDltaslqekeraieatNAEITKLRSRVDLKLQELqhlkneg 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 348 -----AQSENDLLNSNQMLKE-MVERLKQECRNFRS------------QAEKAQLEAE---KTLEEKQIQWLEEK----- 401
Cdd:pfam15921 541 dhlrnVQTECEALKLQMAEKDkVIEILRQQIENMTQlvgqhgrtagamQVEKAQLEKEindRRLELQEFKILKDKkdaki 620
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 402 HKLHERITDRE----EKYNQAKEKLQRAA-IAQKKRKSLHE-----NKLKRLQEKVEVLEA----KKEELETENQVLNRQ 467
Cdd:pfam15921 621 RELEARVSDLElekvKLVNAGSERLRAVKdIKQERDQLLNEvktsrNELNSLSEDYEVLKRnfrnKSEEMETTTNKLKMQ 700
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
201-493 |
1.92e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 44.67 E-value: 1.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 201 RERNKIQSELDGL-QSDNEILKAAVEhhkvllVEKDRELIRKVQAAKEEGYQKLVVLQDEKLELEnRLADLEKMKVEHDV 279
Cdd:TIGR02169 153 VERRKIIDEIAGVaEFDRKKEKALEE------LEEVEENIERLDLIIDEKRQQLERLRREREKAE-RYQALLKEKREYEG 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 280 W-RQSEKDQYEEKLRASQMAEEITRKELQSVRLKLQQQIVTIENAEKE------------KNENSDLKQQISSLQIQVTS 346
Cdd:TIGR02169 226 YeLLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLleelnkkikdlgEEEQLRVKEKIGELEAEIAS 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 347 LAQSENDLLNSNQMLKEMVERLKQECRNFRSQAEKaqleaektLEEKQIQWLEEKHKLHERITDREEKYNqakEKLQRAA 426
Cdd:TIGR02169 306 LERSIAEKERELEDAEERLAKLEAEIDKLLAEIEE--------LEREIEEERKRRDKLTEEYAELKEELE---DLRAELE 374
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1370462044 427 IAQKKRKSLHEnKLKRLQEKVEVLEAKKEELETE-NQVLNRQNVPFEDYTRLQKRLKDIQRRHNEFRS 493
Cdd:TIGR02169 375 EVDKEFAETRD-ELKDYREKLEKLKREINELKRElDRLQEELQRLSEELADLNAAIAGIEAKINELEE 441
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
174-484 |
2.22e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 44.15 E-value: 2.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 174 VKELKHSNKLEITDIKLETARAK-SELERERNKIQSELDGLQSDNEILKAAVEHHKVLLVEKDRELIRKVQAAKEEGYQK 252
Cdd:PRK05771 22 LEALHELGVVHIEDLKEELSNERlRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKIEKE 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 253 LVVLQDEKLELENRLADLEKMKVEHDVWRQSEKDqyEEKLRasqmaeeitRKELQSVRLKLqqqiVTIENAEKEKNENSD 332
Cdd:PRK05771 102 IKELEEEISELENEIKELEQEIERLEPWGNFDLD--LSLLL---------GFKYVSVFVGT----VPEDKLEELKLESDV 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 333 LKQQ-ISSLQIQVTSLAQSENDLLNsnqmlkemverlkqecrNFRSQAEKAQLEAEKTLEEKQIQwlEEKHKLHERITDR 411
Cdd:PRK05771 167 ENVEyISTDKGYVYVVVVVLKELSD-----------------EVEEELKKLGFERLELEEEGTPS--ELIREIKEELEEI 227
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1370462044 412 EEKYNQAKEKLqraaiaqKKRKSLHENKLKRLQEK----VEVLEAKKEELETENQVLNRQNVPFEDYTRLQKRLKDI 484
Cdd:PRK05771 228 EKERESLLEEL-------KELAKKYLEELLALYEYleieLERAEALSKFLKTDKTFAIEGWVPEDRVKKLKELIDKA 297
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
43-170 |
2.59e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 2.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 43 ESEIARLEEDKEELRNQllNVDLTKDSKRVEQLAREKVYLCQKLKGLEAEVAELKAEKENSEAQVENAQRiQVRQLAEMQ 122
Cdd:COG4913 667 EREIAELEAELERLDAS--SDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQD-RLEAAEDLA 743
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 1370462044 123 ATVRSLEAEKQSANLRAERLEKELQSS-SEQNTFLINKLHKAEREINTL 170
Cdd:COG4913 744 RLELRALLEERFAAALGDAVERELRENlEERIDALRARLNRAEEELERA 792
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
33-494 |
3.24e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.51 E-value: 3.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 33 RILDEGKIKYESEIARLEEDKEELRNQllNVDLTKDSKRVEQLAREKVYLCQKLKGLEAEVAELKAEKENSEAQVenaqr 112
Cdd:PRK03918 172 KEIKRRIERLEKFIKRTENIEELIKEK--EKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELE----- 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 113 iqvRQLAEMQATVRSLEAEKQSANLRAERLEKElqssseqntflINKLHKAEREINTLSSKVKELKHSNKL--EITDIKL 190
Cdd:PRK03918 245 ---KELESLEGSKRKLEEKIRELEERIEELKKE-----------IEELEEKVKELKELKEKAEEYIKLSEFyeEYLDELR 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 191 ETARAKSELERERNKIQSELDGLQSDNEILKAavehhkvlLVEKDRELIRKVQAAKE--EGYQKLVVLQDEKLELENRLA 268
Cdd:PRK03918 311 EIEKRLSRLEEEINGIEERIKELEEKEERLEE--------LKKKLKELEKRLEELEErhELYEEAKAKKEELERLKKRLT 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 269 DLEKMKVEHDVWR-QSEKDQYEEKL-----RASQMAEEITRKELQSVRLKLQQQIVTIENAEKEKNENSDLKQ----QIS 338
Cdd:PRK03918 383 GLTPEKLEKELEElEKAKEEIEEEIskitaRIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEeytaELK 462
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 339 SLQIQVTSLAQSENDLLNSnqmLKEMVERLKQECRNFRSQAEKAQL-EAEKTLEEKQIQWLEEKHKLHERItdrEEKYNQ 417
Cdd:PRK03918 463 RIEKELKEIEEKERKLRKE---LRELEKVLKKESELIKLKELAEQLkELEEKLKKYNLEELEKKAEEYEKL---KEKLIK 536
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1370462044 418 AKEKLQRAAIAQKKRKSLhENKLKRLQEKVEVLEAKKEELETENQVLNrqnvpFEDYTRLQKRLKDIQRRHNEFRSL 494
Cdd:PRK03918 537 LKGEIKSLKKELEKLEEL-KKKLAELEKKLDELEEELAELLKELEELG-----FESVEELEERLKELEPFYNEYLEL 607
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
243-460 |
4.74e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 4.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 243 QAAKEEGYQKLVVLQDEKLELENRLADLEKMKVEhdvwRQSEKDQYEEKLRASQMAEEITRKELQSVRLKLQQQIVTIEN 322
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKA----LLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 323 AEKEKNENSD-LKQQISSLQ-------IQVTSLAQSENDLLNSNQMLKEMVERLKQECRNFRsqAEKAQLEAEKTLEEKQ 394
Cdd:COG4942 95 LRAELEAQKEeLAELLRALYrlgrqppLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELR--ADLAELAALRAELEAE 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1370462044 395 IQWLEEkhkLHERITDREEKYNQAKEKLQRAAIAQKKRKSLHENKLKRLQEKVEVLEAKKEELETE 460
Cdd:COG4942 173 RAELEA---LLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
85-462 |
4.96e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 43.11 E-value: 4.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 85 KLKGLEAEVAELKAEKENSEAQVENAqriqVRQLAEMQATVRSLEAEKQsanlRAERLEKELQSSSEqntflinKLHKAE 164
Cdd:PRK02224 207 RLNGLESELAELDEEIERYEEQREQA----RETRDEADEVLEEHEERRE----ELETLEAEIEDLRE-------TIAETE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 165 REINTLSSKVKELKhsNKLEITDIKLETARAKSELER-ERNKIQSELDGLQSDNEILKAAVEHHKVLLVEKDRELIRKVQ 243
Cdd:PRK02224 272 REREELAEEVRDLR--ERLEELEEERDDLLAEAGLDDaDAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLRE 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 244 AAKEegyqklvvLQDEKLELENRLADLEkmkvehdvwrqSEKDQYEEKLRASQMAEEITRKELQSVRLKLQQQIVTIENA 323
Cdd:PRK02224 350 DADD--------LEERAEELREEAAELE-----------SELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNA 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 324 EKEK----NENSDLKQQISSLQiqvTSLAQSENDLLNSNQMLKE--------MVERLKQECRNFRSQAEKAQLEAEKTLE 391
Cdd:PRK02224 411 EDFLeelrEERDELREREAELE---ATLRTARERVEEAEALLEAgkcpecgqPVEGSPHVETIEEDRERVEELEAELEDL 487
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1370462044 392 EKQIQWLEEKHKLHERITDREEKYNQAKEKLQRAAiaqkKRKSLHENKLKRLQEKVEVLEAKKEELETENQ 462
Cdd:PRK02224 488 EEEVEEVEERLERAEDLVEAEDRIERLEERREDLE----ELIAERRETIEEKRERAEELRERAAELEAEAE 554
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
20-472 |
6.22e-04 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 42.81 E-value: 6.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 20 LKSEFEHQKEEYARILDEGKIKYESEIARLEEDKEELRNQLLNVD-LTKDSKRVEQLAREKVYLCQKLKGLEAEVAELKA 98
Cdd:pfam05557 14 LQNEKKQMELEHKRARIELEKKASALKRQLDRESDRNQELQKRIRlLEKREAEAEEALREQAELNRLKKKYLEALNKKLN 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 99 EKENSEAQVENAQRIQVRQLAEMQAtvrsleaEKQSANLRAERLEKELQSSSEQNTFLINKLHKAEREINTLSSKVKELK 178
Cdd:pfam05557 94 EKESQLADAREVISCLKNELSELRR-------QIQRAELELQSTNSELEELQERLDLLKAKASEAEQLRQNLEKQQSSLA 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 179 HSNK----LEI-----TDIKLETARAKSELEReRNKIQSELDGLQSDNEILKAAVEhHKVLLVEKDRELIRKVQaaKEEG 249
Cdd:pfam05557 167 EAEQrikeLEFeiqsqEQDSEIVKNSKSELAR-IPELEKELERLREHNKHLNENIE-NKLLLKEEVEDLKRKLE--REEK 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 250 YQ-KLVVLQDEKLELENRLADLEKMKVEH--------DVWRQSEKDQYEEK-LRASQMAEEITRKELQSVRLKLQQQI-V 318
Cdd:pfam05557 243 YReEAATLELEKEKLEQELQSWVKLAQDTglnlrspeDLSRRIEQLQQREIvLKEENSSLTSSARQLEKARRELEQELaQ 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 319 TIENAEKEKNENSDLKQQISSLQIQVtSLAQSENDLLnsNQMLKEMVERLKQEcrNFRSQAEKAQLEAEKTLEEKQIQWL 398
Cdd:pfam05557 323 YLKKIEDLNKKLKRHKALVRRLQRRV-LLLTKERDGY--RAILESYDKELTMS--NYSPQLLERIEEAEDMTQKMQAHNE 397
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1370462044 399 EEKHKLhERITDREEKYNQAKEKLQRAAIAQKKRKSLHENKLKRlqEKVEVLEAKKEELETENQVLNRQNVPFE 472
Cdd:pfam05557 398 EMEAQL-SVAEEELGGYKQQAQTLERELQALRQQESLADPSYSK--EEVDSLRRKLETLELERQRLREQKNELE 468
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
50-185 |
6.59e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 42.54 E-value: 6.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 50 EEDKEELRNQLLNVDLTKDSKRVEQLARekvylcqKLKGLEAEVAELKAEkenseaqvenaqriqvrqLAEMQATVRSLE 129
Cdd:COG2433 393 EEPEAEREKEHEERELTEEEEEIRRLEE-------QVERLEAEVEELEAE------------------LEEKDERIERLE 447
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 130 AE----KQSANLRAERlEKELQSSSEQNTFLINKLHKAEREINTLSSKVKELKHSNKLEI 185
Cdd:COG2433 448 RElseaRSEERREIRK-DREISRLDREIERLERELEEERERIEELKRKLERLKELWKLEH 506
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
64-494 |
8.25e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.06 E-value: 8.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 64 DLTKDSKRVEQLAREKVYLCQKLKGLEAEVAELKAEKENSEAQVENAQRIQvrQLAEMQATVRSLEAEKQSANLRAERLE 143
Cdd:COG4717 75 ELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLL--QLLPLYQELEALEAELAELPERLEELE 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 144 KELQSSSEqntfLINKLHKAEREINTLSSKVKELKHSNKLEITDIKLETARAKSELERERNKIQSELDGLQSDNEILKAA 223
Cdd:COG4717 153 ERLEELRE----LEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEE 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 224 VEHHKV-LLVEKDRELIRKVQAAKEEGYQKLVVLQDEKLELENRLADLEKMKVE----HDVWRQSEKDQYEEKLRASQMA 298
Cdd:COG4717 229 LEQLENeLEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVlgllALLFLLLAREKASLGKEAEELQ 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 299 EEITRKELQSVRLKLQQQIVTIENaEKEKNENSDLKQQISSLQIQVTSLAQSENDLlnsnqmlkemveRLKQECRNFRSQ 378
Cdd:COG4717 309 ALPALEELEEEELEELLAALGLPP-DLSPEELLELLDRIEELQELLREAEELEEEL------------QLEELEQEIAAL 375
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 379 AEKAQLEAEKTLEEKQIQWlEEKHKLHERITDREEKYNQAKEKLQRAAIAQKKRKslHENKLKRLQEKVEVLEAKKEELE 458
Cdd:COG4717 376 LAEAGVEDEEELRAALEQA-EEYQELKEELEELEEQLEELLGELEELLEALDEEE--LEEELEELEEELEELEEELEELR 452
|
410 420 430
....*....|....*....|....*....|....*.
gi 1370462044 459 TENQVLNRQNVPFEDYTRLQKRLKDIQRRHNEFRSL 494
Cdd:COG4717 453 EELAELEAELEQLEEDGELAELLQELEELKAELREL 488
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
152-458 |
1.07e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.03 E-value: 1.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 152 QNTFLINKLHKAEREiNTLSSKVKELKHSnKLEITDIKLETARAKSELERERNKIQSElDGLQSDNEILKAAVEHHKVLL 231
Cdd:pfam17380 267 ENEFLNQLLHIVQHQ-KAVSERQQQEKFE-KMEQERLRQEKEEKAREVERRRKLEEAE-KARQAEMDRQAAIYAEQERMA 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 232 VEKDRELIRKVQaakEEGYQKLVVLQDEKLELE-NRLADLEKMKVEHDvwRQSEKDQYE-EKLRASQMAEEITRKELQSV 309
Cdd:pfam17380 344 MERERELERIRQ---EERKRELERIRQEEIAMEiSRMRELERLQMERQ--QKNERVRQElEAARKVKILEEERQRKIQQQ 418
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 310 RLKLQQQIVTIENA---------EKEKNENSDLKQQISSLQIQVTSLAQSENDLlnsnqmlKEMVERLKQECRNFRSQAE 380
Cdd:pfam17380 419 KVEMEQIRAEQEEArqrevrrleEERAREMERVRLEEQERQQQVERLRQQEEER-------KRKKLELEKEKRDRKRAEE 491
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1370462044 381 KAQLEAEKTLEEKQIQWLEEKHKLHERITDREEKYNQAKEKLQRAAIAQKKRKSLHENKLKRLQEKVEVLEAKKEELE 458
Cdd:pfam17380 492 QRRKILEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLE 569
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
376-490 |
1.53e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.30 E-value: 1.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 376 RSQAEKAQLEAEKTLEE--------KQIQWLEEKHKLHERITDREEKYNQAKEKLQRaaiaQKKRKSLHENKLKRlqeKV 447
Cdd:PRK12704 30 EAKIKEAEEEAKRILEEakkeaeaiKKEALLEAKEEIHKLRNEFEKELRERRNELQK----LEKRLLQKEENLDR---KL 102
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 1370462044 448 EVLEAKKEELETENQVLNRQNvpfEDYTRLQKRLKDIQRRHNE 490
Cdd:PRK12704 103 ELLEKREEELEKKEKELEQKQ---QELEKKEEELEELIEEQLQ 142
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
60-272 |
1.53e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.90 E-value: 1.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 60 LLNVDLTKDSKRVEQLAREKVYLCQKLKGLEAEVAELKAEKENSEAQVENAQRiqvrQLAEMQATVRSLEAEKQSANLRA 139
Cdd:COG4942 10 LLALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALER----RIAALARRIRALEQELAALEAEL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 140 ERLEKELQSSSEQNTFLINKLHKAEREINTLS--SKVKELKHSNKLEITDIKLETARAKSELERER-NKIQSELDGLQSD 216
Cdd:COG4942 86 AELEKEIAELRAELEAQKEELAELLRALYRLGrqPPLALLLSPEDFLDAVRRLQYLKYLAPARREQaEELRADLAELAAL 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1370462044 217 NEILKAAVEHHKVLLVEKDRELiRKVQAAKEEGYQKLVVLQDEKLELENRLADLEK 272
Cdd:COG4942 166 RAELEAERAELEALLAELEEER-AALEALKAERQKLLARLEKELAELAAELAELQQ 220
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
102-458 |
1.56e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.59 E-value: 1.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 102 NSEAQVENAQRIQVRqLAEMQATVRSLEAEKQSANLRAERLEKELQSSSEQNTFLINKLHKAEREINTLSSKVKELKhsN 181
Cdd:TIGR02169 668 FSRSEPAELQRLRER-LEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELE--E 744
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 182 KLEITDIKLETARAK-SELERERNKIQSELDGLQSDNEILKAAVEHHKV----LLVEKDRELIRKVQAAKEEGYQKLVVL 256
Cdd:TIGR02169 745 DLSSLEQEIENVKSElKELEARIEELEEDLHKLEEALNDLEARLSHSRIpeiqAELSKLEEEVSRIEARLREIEQKLNRL 824
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 257 QDEKLELENRLADLEKMKVEHDVWRQSEKDQYEE-KLRASQMAEEITRKELQSVRLklqqqivtIENAEKEKNENSDLKQ 335
Cdd:TIGR02169 825 TLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENlNGKKEELEEELEELEAALRDL--------ESRLGDLKKERDELEA 896
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 336 QISSLQIQVTSLAQSENDLLNSNQMLKEMVERLKQECRNFRSQAEKAQLEAEKTLEEKQIQwlEEKHKLHERITDREEKY 415
Cdd:TIGR02169 897 QLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQ--AELQRVEEEIRALEPVN 974
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 1370462044 416 NQAKEKLQRAaiaqkkrkslhENKLKRLQEKVEVLEAKKEELE 458
Cdd:TIGR02169 975 MLAIQEYEEV-----------LKRLDELKEKRAKLEEERKAIL 1006
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
119-489 |
2.18e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 41.19 E-value: 2.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 119 AEMQATVRSLEAEKQSANLRAERLEKELQSSSEQNTFLINKLHKAEREINTLSSKVKELKHSNKLEITDIkletARAKSE 198
Cdd:TIGR00606 691 AELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDI----QRLKND 766
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 199 LERERNKIQSELDGLQSDNEILKAAVEHHKVLLVEKDRELIRKVQAAKEEGYQKLVVLQDEKLELENRLADLEKMKVEHD 278
Cdd:TIGR00606 767 IEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIE 846
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 279 VWRQSEKDQYEEKLRASQMAEEITRKELQsVRLKLQQQIVTIENAEKEKNENSDLKQQISSLQIQVTSLAQSENDLLNSN 358
Cdd:TIGR00606 847 LNRKLIQDQQEQIQHLKSKTNELKSEKLQ-IGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEK 925
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 359 QML---------------KEMVERLKQECRNFRSQAEKAQLEAEKTLEEKQIQWLEEKHKLHERiTDREEKYNQAKEKLQ 423
Cdd:TIGR00606 926 EELissketsnkkaqdkvNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEEC-EKHQEKINEDMRLMR 1004
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1370462044 424 RAAIAQKKRKSLHENKLKRLQEKVEVLEAKKEELETENQVLNRQNVPF-EDYTRLQKRLKDIQRRHN 489
Cdd:TIGR00606 1005 QDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQMkQEHQKLEENIDLIKRNHV 1071
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
2-488 |
2.22e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 40.82 E-value: 2.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 2 EVEKYRAVYNKLRYEHTFLKSEFEHQKEEYARI--LDEGKIKYESEIARLEEDKEELRNQLLNV--------DLTKDSKR 71
Cdd:PRK03918 208 EINEISSELPELREELEKLEKEVKELEELKEEIeeLEKELESLEGSKRKLEEKIRELEERIEELkkeieeleEKVKELKE 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 72 VEQLAREKVYLCQKLKGLEAEVAELKAEKENSEAQVENAQRiQVRQLAEMQATVRSLEAEKQSANLRAERLEKELQssse 151
Cdd:PRK03918 288 LKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEE-RIKELEEKEERLEELKKKLKELEKRLEELEERHE---- 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 152 qntflinKLHKAEREINTLSSKVKELKHSNKLEITDIKLETARAKSELERERNKIQSELDGLQSDNEILKAAV------- 224
Cdd:PRK03918 363 -------LYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIeelkkak 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 225 -----------EHHKVLLVEKDRELIRKVQAAKEEGYQKLVVLQDEKLELENRLADLEKMKVEHDVWRQSEkdQYEEKLR 293
Cdd:PRK03918 436 gkcpvcgreltEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLK--ELEEKLK 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 294 aSQMAEEITRKElqsvrlklqqqivtiENAEKEKNENSDLKQQISSLQIQVTSLAQSENDLLNSNQMLKEMVERLKQECR 373
Cdd:PRK03918 514 -KYNLEELEKKA---------------EEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLK 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 374 NFRSQAEKAQLEAEKTLEEkqiqwLEEKHKLHERITDreekynqAKEKLQRAAIAQKKRKSLHENKLKRLQEKVEVLEAK 453
Cdd:PRK03918 578 ELEELGFESVEELEERLKE-----LEPFYNEYLELKD-------AEKELEREEKELKKLEEELDKAFEELAETEKRLEEL 645
|
490 500 510
....*....|....*....|....*....|....*
gi 1370462044 454 KEELETENQVLNRqnvpfEDYTRLQKRLKDIQRRH 488
Cdd:PRK03918 646 RKELEELEKKYSE-----EEYEELREEYLELSREL 675
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
28-222 |
3.66e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.44 E-value: 3.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 28 KEEYARILDEGKIKYESEIARLEEDKEELRnqllnvdltkdsKRVEQLAREKVYLCQKLKGLEAEVAELKAEKEnseaQV 107
Cdd:TIGR02169 313 KERELEDAEERLAKLEAEIDKLLAEIEELE------------REIEEERKRRDKLTEEYAELKEELEDLRAELE----EV 376
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 108 ENAQRIQVRQLAEMQATVRSLEAEKQSANLRAERLEKELQSSSEQNTFLINKLHKAEREINTLSSKVKEL-----KHSNK 182
Cdd:TIGR02169 377 DKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKaleikKQEWK 456
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1370462044 183 LEITDIKLETARAK-SELERERNKIQSELDGLQSDNEILKA 222
Cdd:TIGR02169 457 LEQLAADLSKYEQElYDLKEEYDRVEKELSKLQRELAEAEA 497
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
53-378 |
3.72e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 40.28 E-value: 3.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 53 KEELRNQLLNV----DLTKDSKRVEQLAREKVYLCQKLKGLEAEVAELKAEKENSEAQVENAQriqvRQLAEMQATVRSl 128
Cdd:PRK11281 38 EADVQAQLDALnkqkLLEAEDKLVQQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQ----AELEALKDDNDE- 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 129 EAEKQSANLRAERLEKELQSSSEQntflinkLHKAEREINTLSSKVkelkhsnkleitdIKLETArakseLERERNKIQS 208
Cdd:PRK11281 113 ETRETLSTLSLRQLESRLAQTLDQ-------LQNAQNDLAEYNSQL-------------VSLQTQ-----PERAQAALYA 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 209 ELDGLQSDNEILKAavehhkvllVEKDRELIRKVQAAKEEGYQKLVVLQDE--KLELEN--RLADLEKMKVEHDVWRQse 284
Cdd:PRK11281 168 NSQRLQQIRNLLKG---------GKVGGKALRPSQRVLLQAEQALLNAQNDlqRKSLEGntQLQDLLQKQRDYLTARI-- 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 285 kDQYEEKLRASQmaEEITRKelqsvRLKLQQQIVT-IENAEK--EKNENSDLKQQIS-SLQIQVTSLAQSE--NDLLNSN 358
Cdd:PRK11281 237 -QRLEHQLQLLQ--EAINSK-----RLTLSEKTVQeAQSQDEaaRIQANPLVAQELEiNLQLSQRLLKATEklNTLTQQN 308
|
330 340
....*....|....*....|
gi 1370462044 359 QMLKEMVERLKQECRNFRSQ 378
Cdd:PRK11281 309 LRVKNWLDRLTQSERNIKEQ 328
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
84-270 |
4.24e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.28 E-value: 4.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 84 QKLKGLEAEVAELKAEKENSEAQVENAQRI-----QVRQLAEMQATVRSLEAEKQSANLRAERLEKELQSSSEQNtfliN 158
Cdd:COG4913 610 AKLAALEAELAELEEELAEAEERLEALEAEldalqERREALQRLAEYSWDEIDVASAEREIAELEAELERLDASS----D 685
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 159 KLHKAEREINTLSSKVKELKHsnklEITDIKLETARAKSELERernkIQSELDGLQSDNEILKAAVEHHKVLLVEK--DR 236
Cdd:COG4913 686 DLAALEEQLEELEAELEELEE----ELDELKGEIGRLEKELEQ----AEEELDELQDRLEAAEDLARLELRALLEErfAA 757
|
170 180 190
....*....|....*....|....*....|....*
gi 1370462044 237 ELIRKVQAAKEEGYQK-LVVLQDEKLELENRLADL 270
Cdd:COG4913 758 ALGDAVERELRENLEErIDALRARLNRAEEELERA 792
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
320-494 |
6.28e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 39.37 E-value: 6.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 320 IENAEKEKNENSDLKQQISSLQIQVTSLAQSENDLLNSNQMLKEMVERLKQECRNFRSQAEKAQLEAEKTLEEKQIQWLE 399
Cdd:COG4717 73 LKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPERLEELE 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 400 EKHK-LHERITDREEKYNQAKEKLQRAAIAQKKRKSLHENKLKRLQEKVEVLEAKKEELETENQVLNRQNvpfEDYTRLQ 478
Cdd:COG4717 153 ERLEeLRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEEL---EELEEEL 229
|
170
....*....|....*.
gi 1370462044 479 KRLKDIQRRHNEFRSL 494
Cdd:COG4717 230 EQLENELEAAALEERL 245
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
43-216 |
6.96e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 39.51 E-value: 6.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 43 ESEIARLEEDKEELRNQL--LNVDLTKDSKRVEQLAR--EKVYLCQKLKGLEAEVAELKAEKENSEAQVENAQRIQvRQL 118
Cdd:COG4913 616 EAELAELEEELAEAEERLeaLEAELDALQERREALQRlaEYSWDEIDVASAEREIAELEAELERLDASSDDLAALE-EQL 694
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 119 AEMQATVRSLEAEKQSANLRAERLEKELQSSSEQntflINKLHKAEREINTLSSKVKELKHSNKLEITDIKLETARAKSE 198
Cdd:COG4913 695 EELEAELEELEEELDELKGEIGRLEKELEQAEEE----LDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELREN 770
|
170
....*....|....*...
gi 1370462044 199 LERERNKIQSELDGLQSD 216
Cdd:COG4913 771 LEERIDALRARLNRAEEE 788
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
20-385 |
7.63e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 39.33 E-value: 7.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 20 LKSEFEHQKEEYARIL---DEGKIKYESEIARLEEDKEELRNQLlnVDLTKDSKRVEQLAREKVYLCQKLKGLEAEVAEL 96
Cdd:pfam15921 438 MKSECQGQMERQMAAIqgkNESLEKVSSLTAQLESTKEMLRKVV--EELTAKKMTLESSERTVSDLTASLQEKERAIEAT 515
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 97 KAEKENSEAQVEnAQRIQVRQLAEMQATVRSLEAEKQSANLRAERLEKELQSSSEQNTFLINKLHKAEREINTLSSKVKE 176
Cdd:pfam15921 516 NAEITKLRSRVD-LKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQ 594
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 177 LKHsnklEITDIKLETARAKSELERERNKIQsELDGLQSDNEIlkaavehHKVLLVEKDRELIRKVQAAKEEGYQKLVVL 256
Cdd:pfam15921 595 LEK----EINDRRLELQEFKILKDKKDAKIR-ELEARVSDLEL-------EKVKLVNAGSERLRAVKDIKQERDQLLNEV 662
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 257 QDEKLELENRLADLEKMKveHDVWRQSEK-----DQYEEKLRASQMAEEITRKELQS----------VRLKLQQQIVT-- 319
Cdd:pfam15921 663 KTSRNELNSLSEDYEVLK--RNFRNKSEEmetttNKLKMQLKSAQSELEQTRNTLKSmegsdghamkVAMGMQKQITAkr 740
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 320 ----------------IENAEKEKNEnsdLKQQISSLQIQVTSLAQSENDLLNSNQMLKEMVERLKQECRNFRSQAEKAQ 383
Cdd:pfam15921 741 gqidalqskiqfleeaMTNANKEKHF---LKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKAS 817
|
..
gi 1370462044 384 LE 385
Cdd:pfam15921 818 LQ 819
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
13-215 |
7.97e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 39.27 E-value: 7.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 13 LRYEHTFLKSEFEHQKEEYARILDEGKiKYESEIARLEEDKEELRNQL--LNVDLTKDSKRVEQLAREKVYLCQKLKGLE 90
Cdd:TIGR02168 731 LRKDLARLEAEVEQLEERIAQLSKELT-ELEAEIEELEERLEEAEEELaeAEAEIEELEAQIEQLKEELKALREALDELR 809
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 91 AEVAELKAE-------KENSEAQVENAQRIQVR---QLAEMQATVRSLEAEKQSANLRAERLEKELQSSSEQNTFLINKL 160
Cdd:TIGR02168 810 AELTLLNEEaanlrerLESLERRIAATERRLEDleeQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEAL 889
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1370462044 161 HKAEREINTLSSKVKELKHsNKLEITDIKLETARAKSELERERNKIQSELDGLQS 215
Cdd:TIGR02168 890 ALLRSELEELSEELRELES-KRSELRRELEELREKLAQLELRLEGLEVRIDNLQE 943
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
251-458 |
8.63e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 38.66 E-value: 8.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 251 QKLVVLQDEKLELENRLADLekmkvehdvwrQSEKDQYEEKLRASQMAEEITRKELQsvrlKLQQQIVTIENAEKEKNEn 330
Cdd:COG3883 23 KELSELQAELEAAQAELDAL-----------QAELEELNEEYNELQAELEALQAEID----KLQAEIAEAEAEIEERRE- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 331 sDLKQQISSLQIQVTSL--------AQSENDLLNSNQMLKEMVERLKQECRNFrsQAEKAQLEAEKTLEEKQIQWLEEKh 402
Cdd:COG3883 87 -ELGERARALYRSGGSVsyldvllgSESFSDFLDRLSALSKIADADADLLEEL--KADKAELEAKKAELEAKLAELEAL- 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1370462044 403 klheritdrEEKYNQAKEKLQRAAIAQKKRKSLHENKLKRLQEKVEVLEAKKEELE 458
Cdd:COG3883 163 ---------KAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAE 209
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
84-274 |
9.82e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 38.34 E-value: 9.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 84 QKLKGLEAEVAELKAEKENSEAQVENAQRiqvrQLAEMQATVRSLEAEKQSANLRAERLEKELQSSSEQNTFLINKLHKA 163
Cdd:COG4372 45 EELEQLREELEQAREELEQLEEELEQARS----ELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEAEELQEELEEL 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462044 164 EREINTLSSKVKELKHSNKLEITDIKLETARAKsELERERNKIQSELDGLQSDNEILKAAVEHHKVLLVEKDRELIRKVQ 243
Cdd:COG4372 121 QKERQDLEQQRKQLEAQIAELQSEIAEREEELK-ELEEQLESLQEELAALEQELQALSEAEAEQALDELLKEANRNAEKE 199
|
170 180 190
....*....|....*....|....*....|.
gi 1370462044 244 AAKEEGYQKLVVLQDEKLELENRLADLEKMK 274
Cdd:COG4372 200 EELAEAEKLIESLPRELAEELLEAKDSLEAK 230
|
|
| |
