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Conserved domains on  [gi|1370511287|ref|XP_024302772|]
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centrosomal protein of 41 kDa isoform X2 [Homo sapiens]

Protein Classification

rhodanese-like domain-containing protein( domain architecture ID 10456811)

rhodanese-like domain-containing protein may have sulfurtransferase activity if an active site cysteine is present; similar to centrosomal protein of 41 kDa (Cep41) required during ciliogenesis for tubulin glutamylation in cilium

CATH:  3.40.250.10
PubMed:  12151332
SCOP:  4000452

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Rhodanese pfam00581
Rhodanese-like domain; Rhodanese has an internal duplication. This Pfam represents a single ...
 157-242 2.55e-15

Rhodanese-like domain; Rhodanese has an internal duplication. This Pfam represents a single copy of this duplicated domain. The domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases.


:

Pssm-ID: 425764 [Multi-domain]  Cd Length: 92  Bit Score: 70.59  E-value: 2.55e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370511287 157 DCPFLLLDVRDRDSYQQCHIVGAYSYPIATLSRTMNPYSNDILEYKN-AHGKIIILYDDDERLASQAATTMCERGFENLF 235
Cdd:pfam00581   3 DGKVVLIDVRPPEEYAKGHIPGAVNVPLSSLSLPPLPLLELLEKLLElLKDKPIVVYCNSGNRAAAAAALLKALGYKNVY 82


                  ....*..
gi 1370511287 236 MLSGGLK 242
Cdd:pfam00581  83 VLDGGFE 89
 
Name Accession Description Interval E-value
Rhodanese pfam00581
Rhodanese-like domain; Rhodanese has an internal duplication. This Pfam represents a single ...
 157-242 2.55e-15

Rhodanese-like domain; Rhodanese has an internal duplication. This Pfam represents a single copy of this duplicated domain. The domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases.


Pssm-ID: 425764 [Multi-domain]  Cd Length: 92  Bit Score: 70.59  E-value: 2.55e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370511287 157 DCPFLLLDVRDRDSYQQCHIVGAYSYPIATLSRTMNPYSNDILEYKN-AHGKIIILYDDDERLASQAATTMCERGFENLF 235
Cdd:pfam00581   3 DGKVVLIDVRPPEEYAKGHIPGAVNVPLSSLSLPPLPLLELLEKLLElLKDKPIVVYCNSGNRAAAAAALLKALGYKNVY 82


                  ....*..
gi 1370511287 236 MLSGGLK 242
Cdd:pfam00581  83 VLDGGFE 89
RHOD cd00158
Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese ...
 157-242 3.62e-15

Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.


Pssm-ID: 238089 [Multi-domain]  Cd Length: 89  Bit Score: 70.02  E-value: 3.62e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370511287 157 DCPFLLLDVRDRDSYQQCHIVGAYSYPIATLSRtmnpysnDILEYKNAHGKIIILYDDDERLASQAATTMCERGFENLFM 236
Cdd:cd00158     8 DEDAVLLDVREPEEYAAGHIPGAINIPLSELEE-------RAALLELDKDKPIVVYCRSGNRSARAAKLLRKAGGTNVYN 80


                  ....*.
gi 1370511287 237 LSGGLK 242
Cdd:cd00158    81 LEGGML 86
RHOD smart00450
Rhodanese Homology Domain; An alpha beta fold found duplicated in the Rhodanese protein. The ...
 160-250 2.39e-12

Rhodanese Homology Domain; An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.


Pssm-ID: 197731 [Multi-domain]  Cd Length: 100  Bit Score: 62.48  E-value: 2.39e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370511287  160 FLLLDVRDRDSYQQCHIVGAYSYPIATLSRTMNPYSNDILEYKNA-----HGKIIILYDDDERLASQAATTMCERGFENL 234
Cdd:smart00450   5 VVLLDVRSPEEYEGGHIPGAVNIPLSELLDRRGELDILEFEELLKrlgldKDKPVVVYCRSGNRSAKAAWLLRELGFKNV 84

                           90
                   ....*....|....*.
gi 1370511287  235 FMLSGGLKVLAQKFPE 250
Cdd:smart00450  85 YLLDGGYKEWSAAGPP 100
PspE COG0607
Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]; ...
 159-242 3.72e-11

Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]; Rhodanese-related sulfurtransferase is part of the Pathway/BioSystem: Urea cycle


Pssm-ID: 440372 [Multi-domain]  Cd Length: 106  Bit Score: 59.21  E-value: 3.72e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370511287 159 PFLLLDVRDRDSYQQCHIVGAYSYPIATLSRTMNPYSNDileyknahgKIIILYDDDERLASQAATTMCERGFENLFMLS 238
Cdd:COG0607    19 DAVLLDVREPEEFAAGHIPGAINIPLGELAERLDELPKD---------KPIVVYCASGGRSAQAAALLRRAGYTNVYNLA 89


                  ....
gi 1370511287 239 GGLK 242
Cdd:COG0607    90 GGIE 93
 
Name Accession Description Interval E-value
Rhodanese pfam00581
Rhodanese-like domain; Rhodanese has an internal duplication. This Pfam represents a single ...
 157-242 2.55e-15

Rhodanese-like domain; Rhodanese has an internal duplication. This Pfam represents a single copy of this duplicated domain. The domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases.


Pssm-ID: 425764 [Multi-domain]  Cd Length: 92  Bit Score: 70.59  E-value: 2.55e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370511287 157 DCPFLLLDVRDRDSYQQCHIVGAYSYPIATLSRTMNPYSNDILEYKN-AHGKIIILYDDDERLASQAATTMCERGFENLF 235
Cdd:pfam00581   3 DGKVVLIDVRPPEEYAKGHIPGAVNVPLSSLSLPPLPLLELLEKLLElLKDKPIVVYCNSGNRAAAAAALLKALGYKNVY 82


                  ....*..
gi 1370511287 236 MLSGGLK 242
Cdd:pfam00581  83 VLDGGFE 89
RHOD cd00158
Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese ...
 157-242 3.62e-15

Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.


Pssm-ID: 238089 [Multi-domain]  Cd Length: 89  Bit Score: 70.02  E-value: 3.62e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370511287 157 DCPFLLLDVRDRDSYQQCHIVGAYSYPIATLSRtmnpysnDILEYKNAHGKIIILYDDDERLASQAATTMCERGFENLFM 236
Cdd:cd00158     8 DEDAVLLDVREPEEYAAGHIPGAINIPLSELEE-------RAALLELDKDKPIVVYCRSGNRSARAAKLLRKAGGTNVYN 80


                  ....*.
gi 1370511287 237 LSGGLK 242
Cdd:cd00158    81 LEGGML 86
RHOD smart00450
Rhodanese Homology Domain; An alpha beta fold found duplicated in the Rhodanese protein. The ...
 160-250 2.39e-12

Rhodanese Homology Domain; An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.


Pssm-ID: 197731 [Multi-domain]  Cd Length: 100  Bit Score: 62.48  E-value: 2.39e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370511287  160 FLLLDVRDRDSYQQCHIVGAYSYPIATLSRTMNPYSNDILEYKNA-----HGKIIILYDDDERLASQAATTMCERGFENL 234
Cdd:smart00450   5 VVLLDVRSPEEYEGGHIPGAVNIPLSELLDRRGELDILEFEELLKrlgldKDKPVVVYCRSGNRSAKAAWLLRELGFKNV 84

                           90
                   ....*....|....*.
gi 1370511287  235 FMLSGGLKVLAQKFPE 250
Cdd:smart00450  85 YLLDGGYKEWSAAGPP 100
PspE COG0607
Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]; ...
 159-242 3.72e-11

Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]; Rhodanese-related sulfurtransferase is part of the Pathway/BioSystem: Urea cycle


Pssm-ID: 440372 [Multi-domain]  Cd Length: 106  Bit Score: 59.21  E-value: 3.72e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370511287 159 PFLLLDVRDRDSYQQCHIVGAYSYPIATLSRTMNPYSNDileyknahgKIIILYDDDERLASQAATTMCERGFENLFMLS 238
Cdd:COG0607    19 DAVLLDVREPEEFAAGHIPGAINIPLGELAERLDELPKD---------KPIVVYCASGGRSAQAAALLRRAGYTNVYNLA 89


                  ....
gi 1370511287 239 GGLK 242
Cdd:COG0607    90 GGIE 93
4RHOD_Repeats cd01529
Member of the Rhodanese Homology Domain superfamily. This CD includes putative ...
 162-241 1.58e-06

Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.


Pssm-ID: 238787 [Multi-domain]  Cd Length: 96  Bit Score: 46.13  E-value: 1.58e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370511287 162 LLDVRDRDSYQQCHIVGAYSYPIATLsrtmnPYSNDILEYKNAHGKI--IILYDDDERLASQAATTMCERGFENLFMLSG 239
Cdd:cd01529    15 LLDVRAEDEYAAGHLPGKRSIPGAAL-----VLRSQELQALEAPGRAtrYVLTCDGSLLARFAAQELLALGGKPVALLDG 89


                  ..
gi 1370511287 240 GL 241
Cdd:cd01529    90 GT 91
GlpE_ST cd01444
GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain ...
 161-241 1.82e-04

GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.


Pssm-ID: 238721 [Multi-domain]  Cd Length: 96  Bit Score: 39.94  E-value: 1.82e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370511287 161 LLLDVRDRDSYQQC--HIVGAYSYPIATLSRTMNPYSNDileyknahgKIIILYDDDERLASQAATTMCERGFENLFMLS 238
Cdd:cd01444    18 VLLDVRDPASYAALpdHIPGAIHLDEDSLDDWLGDLDRD---------RPVVVYCYHGNSSAQLAQALREAGFTDVRSLA 88


                  ...
gi 1370511287 239 GGL 241
Cdd:cd01444    89 GGF 91
4RHOD_Repeat_3 cd01534
Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative ...
 162-241 7.96e-04

Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.


Pssm-ID: 238792 [Multi-domain]  Cd Length: 95  Bit Score: 38.22  E-value: 7.96e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370511287 162 LLDVRDRDSYQQCHIVGAYSYPIATLSRTMNpysndilEYKNAHGKIIILYDDDERLASQAATTMCERGFEnLFMLSGGL 241
Cdd:cd01534    19 RFDVRTPEEYEAGHLPGFRHTPGGQLVQETD-------HFAPVRGARIVLADDDGVRADMTASWLAQMGWE-VYVLEGGL 90
RHOD_PspE2 cd01521
Member of the Rhodanese Homology Domain superfamily. This CD includes the putative ...
 160-242 9.06e-04

Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.


Pssm-ID: 238779 [Multi-domain]  Cd Length: 110  Bit Score: 38.49  E-value: 9.06e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370511287 160 FLLLDVRDRDSYQQCHIVGAYSYPiatlSRTMNPYSNDILEyknaHGKIIILYDDDE--RLASQAATTMCERGFENLFML 237
Cdd:cd01521    26 FVLVDVRSAEAYARGHVPGAINLP----HREICENATAKLD----KEKLFVVYCDGPgcNGATKAALKLAELGFPVKEMI 97


                  ....*
gi 1370511287 238 sGGLK 242
Cdd:cd01521    98 -GGLD 101
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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