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Conserved domains on  [gi|1316103295|ref|XP_023192544|]
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Krueppel-like factor 7 [Xiphophorus maculatus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
KLF7_N cd21585
N-terminal domain of Kruppel-like factor 7; Kruppel-like factor 7 (KLF7; also known as ...
 2-224 3.70e-84

N-terminal domain of Kruppel-like factor 7; Kruppel-like factor 7 (KLF7; also known as Krueppel-like factor 7, or ubiquitous Kruppel-like factor/UKLF) is a protein which, in humans, is encoded by the KLF7 gene. KLF7 is involved in regulation of the development and function of the nervous system and adipose tissue, type 2 diabetes, blood diseases, as well as pluripotent cell maintenance. It functions as a transcriptional activator. It belongs to a family of proteins, called the Specificity Protein (SP)/KLF family, characterized by a C-terminal DNA-binding domain of 81 amino acids consisting of three Kruppel-like C2H2 zinc fingers. These factors bind to a loose consensus motif, namely NNRCRCCYY (where N is any nucleotide; R is A/G, and Y is C/T), such as the recurring motifs in GC and GT boxes (5'-GGGGCGGGG-3' and 5-GGTGTGGGG-3') that are present in promoters and more distal regulatory elements of mammalian genes. Members of the KLF family can act as activators or repressors of transcription depending on cell and promoter context. KLFs regulate various cellular functions, such as proliferation, differentiation, and apoptosis, as well as the development and homeostasis of several types of tissue. In addition to the C-terminal DNA-binding domain, each KLF also has a unique N-terminal activation/repression domain that confers specificity and allows it to bind specifically to a certain partner, leading to distinct activities in vivo. This model represents the N-terminal domain of KLF7.


:

Pssm-ID: 409244  Cd Length: 160  Bit Score: 250.11  E-value: 3.70e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1316103295   2 DVLANYSIFQELQLVHDTGYFSAMPSLEENWQQTCLELERYLQTEPKRLSELFDEELDCLLTPAFMQgGDSDEDLMDPLL 81
Cdd:cd21585     1 DVLANYSIFQELQLVHDTGYFSALPSLEENWQQTCLELERYLQTEPKRLSELFDEELDCLLTPSFLK-EDEEEELRDPLL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1316103295  82 PSLPDqPSPPPLLVTLPKVQAKILQVPSPNKGQAVAGTdtkdqvlgGVSAAQLSaAVTSLTPPSSPELGRHLFKptqtlt 161
Cdd:cd21585    80 PLPVD-EPPVDILVSLDKLLSLLPSTLQTTSSSAEAYT--------GVNAAQLN-AVTSLTPPSSPELGRHLVK------ 143

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1316103295 162 atadgtltlklvakkvglgatkvvaaralpspPSRGGAlsdgeqggggslggDIPENKKRVHR 224
Cdd:cd21585   144 --------------------------------PPGGGE--------------DSPENKKRVHR 160
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
216-288 3.47e-06

FOG: Zn-finger [General function prediction only];


:

Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 48.15  E-value: 3.47e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1316103295 216 PENKKRVHRCQFNGCRKvyTKSSHLKAHQRTHTGEKPYKCSWEGCEWRFARSDELTRHYRKHTGAKPFKCNHC 288
Cdd:COG5048    27 LSNAPRPDSCPNCTDSF--SRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPLELSRHLRTHHNNPSDLNSKS 97
zf-C2H2 pfam00096
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ...
 283-305 5.24e-06

Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter.


:

Pssm-ID: 395048 [Multi-domain]  Cd Length: 23  Bit Score: 42.29  E-value: 5.24e-06
                          10        20
                  ....*....|....*....|...
gi 1316103295 283 FKCNHCDRCFSRSDHLALHMKRH 305
Cdd:pfam00096   1 YKCPDCGKSFSRKSNLKRHLRTH 23
 
Name Accession Description Interval E-value
KLF7_N cd21585
N-terminal domain of Kruppel-like factor 7; Kruppel-like factor 7 (KLF7; also known as ...
 2-224 3.70e-84

N-terminal domain of Kruppel-like factor 7; Kruppel-like factor 7 (KLF7; also known as Krueppel-like factor 7, or ubiquitous Kruppel-like factor/UKLF) is a protein which, in humans, is encoded by the KLF7 gene. KLF7 is involved in regulation of the development and function of the nervous system and adipose tissue, type 2 diabetes, blood diseases, as well as pluripotent cell maintenance. It functions as a transcriptional activator. It belongs to a family of proteins, called the Specificity Protein (SP)/KLF family, characterized by a C-terminal DNA-binding domain of 81 amino acids consisting of three Kruppel-like C2H2 zinc fingers. These factors bind to a loose consensus motif, namely NNRCRCCYY (where N is any nucleotide; R is A/G, and Y is C/T), such as the recurring motifs in GC and GT boxes (5'-GGGGCGGGG-3' and 5-GGTGTGGGG-3') that are present in promoters and more distal regulatory elements of mammalian genes. Members of the KLF family can act as activators or repressors of transcription depending on cell and promoter context. KLFs regulate various cellular functions, such as proliferation, differentiation, and apoptosis, as well as the development and homeostasis of several types of tissue. In addition to the C-terminal DNA-binding domain, each KLF also has a unique N-terminal activation/repression domain that confers specificity and allows it to bind specifically to a certain partner, leading to distinct activities in vivo. This model represents the N-terminal domain of KLF7.


Pssm-ID: 409244  Cd Length: 160  Bit Score: 250.11  E-value: 3.70e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1316103295   2 DVLANYSIFQELQLVHDTGYFSAMPSLEENWQQTCLELERYLQTEPKRLSELFDEELDCLLTPAFMQgGDSDEDLMDPLL 81
Cdd:cd21585     1 DVLANYSIFQELQLVHDTGYFSALPSLEENWQQTCLELERYLQTEPKRLSELFDEELDCLLTPSFLK-EDEEEELRDPLL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1316103295  82 PSLPDqPSPPPLLVTLPKVQAKILQVPSPNKGQAVAGTdtkdqvlgGVSAAQLSaAVTSLTPPSSPELGRHLFKptqtlt 161
Cdd:cd21585    80 PLPVD-EPPVDILVSLDKLLSLLPSTLQTTSSSAEAYT--------GVNAAQLN-AVTSLTPPSSPELGRHLVK------ 143

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1316103295 162 atadgtltlklvakkvglgatkvvaaralpspPSRGGAlsdgeqggggslggDIPENKKRVHR 224
Cdd:cd21585   144 --------------------------------PPGGGE--------------DSPENKKRVHR 160
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
216-288 3.47e-06

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 48.15  E-value: 3.47e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1316103295 216 PENKKRVHRCQFNGCRKvyTKSSHLKAHQRTHTGEKPYKCSWEGCEWRFARSDELTRHYRKHTGAKPFKCNHC 288
Cdd:COG5048    27 LSNAPRPDSCPNCTDSF--SRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPLELSRHLRTHHNNPSDLNSKS 97
zf-C2H2 pfam00096
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ...
 283-305 5.24e-06

Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter.


Pssm-ID: 395048 [Multi-domain]  Cd Length: 23  Bit Score: 42.29  E-value: 5.24e-06
                          10        20
                  ....*....|....*....|...
gi 1316103295 283 FKCNHCDRCFSRSDHLALHMKRH 305
Cdd:pfam00096   1 YKCPDCGKSFSRKSNLKRHLRTH 23
zf-H2C2_2 pfam13465
Zinc-finger double domain;
269-294 2.23e-05

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 40.43  E-value: 2.23e-05
                          10        20
                  ....*....|....*....|....*.
gi 1316103295 269 ELTRHYRKHTGAKPFKCNHCDRCFSR 294
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSFKS 26
ZnF_C2H2 smart00355
zinc finger;
283-305 2.24e-03

zinc finger;


Pssm-ID: 197676  Cd Length: 23  Bit Score: 34.75  E-value: 2.24e-03
                           10        20
                   ....*....|....*....|...
gi 1316103295  283 FKCNHCDRCFSRSDHLALHMKRH 305
Cdd:smart00355   1 YRCPECGKVFKSKSALREHMRTH 23
 
Name Accession Description Interval E-value
KLF7_N cd21585
N-terminal domain of Kruppel-like factor 7; Kruppel-like factor 7 (KLF7; also known as ...
 2-224 3.70e-84

N-terminal domain of Kruppel-like factor 7; Kruppel-like factor 7 (KLF7; also known as Krueppel-like factor 7, or ubiquitous Kruppel-like factor/UKLF) is a protein which, in humans, is encoded by the KLF7 gene. KLF7 is involved in regulation of the development and function of the nervous system and adipose tissue, type 2 diabetes, blood diseases, as well as pluripotent cell maintenance. It functions as a transcriptional activator. It belongs to a family of proteins, called the Specificity Protein (SP)/KLF family, characterized by a C-terminal DNA-binding domain of 81 amino acids consisting of three Kruppel-like C2H2 zinc fingers. These factors bind to a loose consensus motif, namely NNRCRCCYY (where N is any nucleotide; R is A/G, and Y is C/T), such as the recurring motifs in GC and GT boxes (5'-GGGGCGGGG-3' and 5-GGTGTGGGG-3') that are present in promoters and more distal regulatory elements of mammalian genes. Members of the KLF family can act as activators or repressors of transcription depending on cell and promoter context. KLFs regulate various cellular functions, such as proliferation, differentiation, and apoptosis, as well as the development and homeostasis of several types of tissue. In addition to the C-terminal DNA-binding domain, each KLF also has a unique N-terminal activation/repression domain that confers specificity and allows it to bind specifically to a certain partner, leading to distinct activities in vivo. This model represents the N-terminal domain of KLF7.


Pssm-ID: 409244  Cd Length: 160  Bit Score: 250.11  E-value: 3.70e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1316103295   2 DVLANYSIFQELQLVHDTGYFSAMPSLEENWQQTCLELERYLQTEPKRLSELFDEELDCLLTPAFMQgGDSDEDLMDPLL 81
Cdd:cd21585     1 DVLANYSIFQELQLVHDTGYFSALPSLEENWQQTCLELERYLQTEPKRLSELFDEELDCLLTPSFLK-EDEEEELRDPLL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1316103295  82 PSLPDqPSPPPLLVTLPKVQAKILQVPSPNKGQAVAGTdtkdqvlgGVSAAQLSaAVTSLTPPSSPELGRHLFKptqtlt 161
Cdd:cd21585    80 PLPVD-EPPVDILVSLDKLLSLLPSTLQTTSSSAEAYT--------GVNAAQLN-AVTSLTPPSSPELGRHLVK------ 143

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1316103295 162 atadgtltlklvakkvglgatkvvaaralpspPSRGGAlsdgeqggggslggDIPENKKRVHR 224
Cdd:cd21585   144 --------------------------------PPGGGE--------------DSPENKKRVHR 160
KLF6_N cd21586
N-terminal domain of Kruppel-like factor 6; Kruppel-like factor 6 (KLF6; also known as ...
 2-151 2.21e-35

N-terminal domain of Kruppel-like factor 6; Kruppel-like factor 6 (KLF6; also known as Krueppel-like factor 6, BCD1, CBA1, COPEB, CPBP, GBF, PAC1, ST12, or ZF9) is a protein that, in humans, is encoded by the KLF6 gene. KLF6 contributes to cell proliferation, differentiation, cell death, and signal transduction. Hepatocyte expression of KLF6 regulates hepatic fatty acid and glucose metabolism via transcriptional activation of liver glucokinase and post-transcriptional regulation of the nuclear receptor peroxisome proliferator activated receptor alpha (PPARa). KLF6-expression contributes to hepatic insulin resistance and the progression of non-alcoholic fatty liver disease (NAFLD) to non-alcoholic steatohepatitis (NASH) and NASH-cirrhosis. KLF6 also affects peroxisome proliferator activated receptor gamma (PPARgamma)-signaling in NAFLD. KLF6 has also been identified as a tumor suppressor gene that is inactivated or downregulated in different cancers, including prostate, colon, and hepatocellular carcinomas. KLF6 transactivates genes controlling cell proliferation, including p21, E-cadherin, and pituary tumor-transforming gene 1 (PTTG1). KLF6 functions as a transcriptional activator. It belongs to a family of proteins, called the Specificity Protein (SP)/KLF family, characterized by a C-terminal DNA-binding domain of 81 amino acids consisting of three Kruppel-like C2H2 zinc fingers. These factors bind to a loose consensus motif, namely NNRCRCCYY (where N is any nucleotide; R is A/G, and Y is C/T), such as the recurring motifs in GC and GT boxes (5'-GGGGCGGGG-3' and 5-GGTGTGGGG-3') that are present in promoters and more distal regulatory elements of mammalian genes. Members of the KLF family can act as activators or repressors of transcription depending on cell and promoter context. KLFs regulate various cellular functions, such as proliferation, differentiation, and apoptosis, as well as the development and homeostasis of several types of tissue. In addition to the C-terminal DNA-binding domain, each KLF also has a unique N-terminal activation/repression domain that confers specificity and allows it to bind specifically to a certain partner, leading to distinct activities in vivo. This model represents the N-terminal domain of KLF6.


Pssm-ID: 409245  Cd Length: 198  Bit Score: 126.73  E-value: 2.21e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1316103295   2 DVLANYSIFQELQLVHDTGYFSAMPSLEENWQQTCLELERYLQTEPKR-LSEL--FDEELDcLLTPAFMQGGDSDEDlmD 78
Cdd:cd21586     1 DVIPMCSIFQELQIVHDTGYFSALPSLEEYWQQTCLELERYLQSEPYVsAADLrkFDGQED-LWSKLILACGDKGES--S 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1316103295  79 PLLPSLP--DQPSPPPL----LVTLPKVQAKILQV-PSPnkgQAVAGTDTKDQVLggVSAAQLSAAVTSlTPPSSPELGR 151
Cdd:cd21586    78 PKIPSSSeeDIQDSQNLetnsFNSDASSEASDSSEeLSP---TLSFTSNPLSDVL--VNSGHLGSSVIS-TPPSSPELAK 151
KLF6_7_N-like cd21973
N-terminal domain of Kruppel-like factor (KLF) 6, KLF7, and similar proteins; This subfamily ...
 2-159 6.40e-33

N-terminal domain of Kruppel-like factor (KLF) 6, KLF7, and similar proteins; This subfamily is composed of Kruppel-like factor or Krueppel-like factor (KLF) 6, KLF7, and similar proteins, including KLF Luna, a Drosophila KLF6/KLF7. KLF6 contributes to cell proliferation, differentiation, cell death and signal transduction. Hepatocyte expression of KLF6 regulates hepatic fatty acid and glucose metabolism via transcriptional activation of liver glucokinase and post-transcriptional regulation of the nuclear receptor peroxisome proliferator activated receptor alpha (PPARa). KLF7 is involved in regulation of the development and function of the nervous system and adipose tissue, type 2 diabetes, blood diseases, as well as pluripotent cell maintenance. KLF Luna is maternally required for synchronized nuclear and centrosome cycles in the preblastoderm embryo. KLF6 and KLF7 are transcriptional activators. They belong to a family of proteins, called the Specificity Protein (SP)/KLF family, characterized by a C-terminal DNA-binding domain of 81 amino acids consisting of three Kruppel-like C2H2 zinc fingers. These factors bind to a loose consensus motif, namely NNRCRCCYY (where N is any nucleotide; R is A/G, and Y is C/T), such as the recurring motifs in GC and GT boxes (5'-GGGGCGGGG-3' and 5-GGTGTGGGG-3') that are present in promoters and more distal regulatory elements of mammalian genes. Members of the KLF family can act as activators or repressors of transcription depending on cell and promoter context. KLFs regulate various cellular functions, such as proliferation, differentiation, and apoptosis, as well as the development and homeostasis of several types of tissue. In addition to the C-terminal DNA-binding domain, each KLF also has a unique N-terminal activation/repression domain that confers specificity and allows it to bind specifically to a certain partner, leading to distinct activities in vivo. This model represents the related N-terminal domains of KLF6, KLF7, and similar proteins.


Pssm-ID: 409246 [Multi-domain]  Cd Length: 138  Bit Score: 118.15  E-value: 6.40e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1316103295   2 DVLANYSIFQELQLVHDTGYFSAMPSLEENWQQTCLELERYLQTEPKRLSELFDeeldclltpafmqggDSDEDLMDPLL 81
Cdd:cd21973     1 DILPSGNIFRELQVVHDTGYFSAQPSLEDHWQQTCYEMERYLKDEPKLTSYKKD---------------PSDSPWSPWDL 65

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1316103295  82 PSLPDQPSPPPLLVTLPKVQAKILQVPSPNKgqavagtdtkdqvlggvSAAQLSAAVtSLTPPSSPELGRHLFKPTQT 159
Cdd:cd21973    66 FTPPSEESESSDSDLSLLSIDDLLLDVSSLS-----------------SSSSSSSGV-SWTPPSSPESSRSHPSSSYT 125
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
216-288 3.47e-06

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 48.15  E-value: 3.47e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1316103295 216 PENKKRVHRCQFNGCRKvyTKSSHLKAHQRTHTGEKPYKCSWEGCEWRFARSDELTRHYRKHTGAKPFKCNHC 288
Cdd:COG5048    27 LSNAPRPDSCPNCTDSF--SRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPLELSRHLRTHHNNPSDLNSKS 97
zf-C2H2 pfam00096
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ...
 283-305 5.24e-06

Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter.


Pssm-ID: 395048 [Multi-domain]  Cd Length: 23  Bit Score: 42.29  E-value: 5.24e-06
                          10        20
                  ....*....|....*....|...
gi 1316103295 283 FKCNHCDRCFSRSDHLALHMKRH 305
Cdd:pfam00096   1 YKCPDCGKSFSRKSNLKRHLRTH 23
zf-H2C2_2 pfam13465
Zinc-finger double domain;
269-294 2.23e-05

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 40.43  E-value: 2.23e-05
                          10        20
                  ....*....|....*....|....*.
gi 1316103295 269 ELTRHYRKHTGAKPFKCNHCDRCFSR 294
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSFKS 26
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
228-285 2.26e-05

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 45.46  E-value: 2.26e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1316103295 228 NGCRKVYTKSSHLKAHQRT--HTGE--KPYKCSWEGCEWRFARSDELTRHYRKHTGAKPFKC 285
Cdd:COG5048   293 KQCNISFSRSSPLTRHLRSvnHSGEslKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKE 354
ZnF_C2H2 smart00355
zinc finger;
283-305 2.24e-03

zinc finger;


Pssm-ID: 197676  Cd Length: 23  Bit Score: 34.75  E-value: 2.24e-03
                           10        20
                   ....*....|....*....|...
gi 1316103295  283 FKCNHCDRCFSRSDHLALHMKRH 305
Cdd:smart00355   1 YRCPECGKVFKSKSALREHMRTH 23
zf-H2C2_2 pfam13465
Zinc-finger double domain;
239-266 2.54e-03

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 34.65  E-value: 2.54e-03
                          10        20
                  ....*....|....*....|....*...
gi 1316103295 239 HLKAHQRTHTGEKPYKCswEGCEWRFAR 266
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKC--PECGKSFKS 26
zf-C2H2_4 pfam13894
C2H2-type zinc finger; This family contains a number of divergent C2H2 type zinc fingers.
 283-305 4.18e-03

C2H2-type zinc finger; This family contains a number of divergent C2H2 type zinc fingers.


Pssm-ID: 464025  Cd Length: 24  Bit Score: 34.16  E-value: 4.18e-03
                          10        20
                  ....*....|....*....|...
gi 1316103295 283 FKCNHCDRCFSRSDHLALHMKRH 305
Cdd:pfam13894   1 FKCPICGKSFSSKKSLKRHLKTH 23
zf-C2H2 pfam00096
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ...
 253-277 8.66e-03

Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter.


Pssm-ID: 395048 [Multi-domain]  Cd Length: 23  Bit Score: 33.04  E-value: 8.66e-03
                          10        20
                  ....*....|....*....|....*
gi 1316103295 253 YKCswEGCEWRFARSDELTRHYRKH 277
Cdd:pfam00096   1 YKC--PDCGKSFSRKSNLKRHLRTH 23
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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