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Conserved domains on  [gi|1229775035|ref|XP_022140575|]
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putative pentatricopeptide repeat-containing protein At1g03510 [Momordica charantia]

Protein Classification

pentatricopeptide repeat-containing protein( domain architecture ID 1000585)

pentatricopeptide repeat (PPR)-containing protein may form anti-parallel alpha helices and bind single-stranded RNA in a sequence-specific and modular manner

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03077 super family cl33629
Protein ECB2; Provisional
 11-423 5.82e-81

Protein ECB2; Provisional


The actual alignment was detected with superfamily member PLN03077:

Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 266.33  E-value: 5.82e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229775035  11 LLSYTKQLTFYVNHGNHEQALALFHHMQASLALGLDAHVFSLtLKSCTAIQRPHLGIAIHAHAAKSSLLSSPFVASALVD 90
Cdd:PLN03077  354 AVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASV-LSACACLGDLDVGVKLHELAERKGLISYVVVANALIE 432

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229775035  91 MYGKCISVSLARKLFDEIPQRSVVVWnailslyahanmlsdalrlfeamdvqpntssfNSIIAGLSELEDGFKAIAFYRK 170
Cdd:PLN03077  433 MYSKCKCIDKALEVFHNIPEKDVISW--------------------------------TSIIAGLRLNNRCFEALIFFRQ 480

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229775035 171 MqQFGLKPNLISLLALLPACVGVAALDLIKQIHGFAMRSDISSHLQLGSGLVEAYGRCGCLSYAHNVFDSmKERDVVAWS 250
Cdd:PLN03077  481 M-LLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNS-HEKDVVSWN 558

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229775035 251 SLISAHALHGEARTALNIFQQMELAEVHPDEITFIGVLKACSHVGLADKALDYFSRMQRDYGLKASSDHYSCLVDVLGRA 330
Cdd:PLN03077  559 ILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRA 638

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229775035 331 GRLHEAFDIIREMPVRATAKAWGALLGACRIYGELELAEIAGKALFEIEPENAANYVLLAKMFASVGRHEEAQRMRREMK 410
Cdd:PLN03077  639 GKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMR 718

                         410
                  ....*....|...
gi 1229775035 411 ERRVKVVPGSSWV 423
Cdd:PLN03077  719 ENGLTVDPGCSWV 731
 
Name Accession Description Interval E-value
PLN03077 PLN03077
Protein ECB2; Provisional
 11-423 5.82e-81

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 266.33  E-value: 5.82e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229775035  11 LLSYTKQLTFYVNHGNHEQALALFHHMQASLALGLDAHVFSLtLKSCTAIQRPHLGIAIHAHAAKSSLLSSPFVASALVD 90
Cdd:PLN03077  354 AVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASV-LSACACLGDLDVGVKLHELAERKGLISYVVVANALIE 432

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229775035  91 MYGKCISVSLARKLFDEIPQRSVVVWnailslyahanmlsdalrlfeamdvqpntssfNSIIAGLSELEDGFKAIAFYRK 170
Cdd:PLN03077  433 MYSKCKCIDKALEVFHNIPEKDVISW--------------------------------TSIIAGLRLNNRCFEALIFFRQ 480

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229775035 171 MqQFGLKPNLISLLALLPACVGVAALDLIKQIHGFAMRSDISSHLQLGSGLVEAYGRCGCLSYAHNVFDSmKERDVVAWS 250
Cdd:PLN03077  481 M-LLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNS-HEKDVVSWN 558

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229775035 251 SLISAHALHGEARTALNIFQQMELAEVHPDEITFIGVLKACSHVGLADKALDYFSRMQRDYGLKASSDHYSCLVDVLGRA 330
Cdd:PLN03077  559 ILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRA 638

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229775035 331 GRLHEAFDIIREMPVRATAKAWGALLGACRIYGELELAEIAGKALFEIEPENAANYVLLAKMFASVGRHEEAQRMRREMK 410
Cdd:PLN03077  639 GKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMR 718

                         410
                  ....*....|...
gi 1229775035 411 ERRVKVVPGSSWV 423
Cdd:PLN03077  719 ENGLTVDPGCSWV 731
E_motif pfam20431
E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) ...
 362-423 3.38e-10

E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) proteins which contain a DYW deaminase domain. The DYW domain is required for RNA editing, a process that deaminates specific cytidines to uridines. This motif, together with the E+ motif, precedes the DYW domain and, although their role is not clear, they are essential in the RNA editing reaction. The E/E+ motifs may contain two degenerate PPR motifs that could be involved in RNA or protein binding.


Pssm-ID: 466580 [Multi-domain]  Cd Length: 63  Bit Score: 55.63  E-value: 3.38e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1229775035 362 YGELELAEIAGKALFEIEPENAANYVLLAKMFASVGRHEEAQRMRREMKERRVKVVPGSSWV 423
Cdd:pfam20431   1 YSNVELAEKAANILLELEKTNDGNYTLLSNIYAYAGRWKDVERIRKLMKSSGIKKRPGCSWI 62
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 320-343 3.11e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 35.12  E-value: 3.11e-03
                          10        20
                  ....*....|....*....|....
gi 1229775035 320 YSCLVDVLGRAGRLHEAFDIIREM 343
Cdd:TIGR00756   3 YNTLIDGLCKAGRVEEALELFKEM 26
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 257-402 4.09e-03

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 39.59  E-value: 4.09e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229775035 257 ALHGEARTALNIFQQMELAEVHPDEItfigvlKACSHVGLADKALDYFSRMQRDYGLKAssDHYSCLVDVLGRAGRLHEA 336
Cdd:COG3914    60 LALAAGEAAAAAAALLLLAALLELAA------LLLQALGRYEEALALYRRALALNPDNA--EALFNLGNLLLALGRLEEA 131

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229775035 337 FD----IIREMPvrATAKAWGALLGACRIYGELELAEIAGKALFEIEPENAANYVLLAKMFASVGRHEEA 402
Cdd:COG3914   132 LAalrrALALNP--DFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEA 199
 
Name Accession Description Interval E-value
PLN03077 PLN03077
Protein ECB2; Provisional
 11-423 5.82e-81

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 266.33  E-value: 5.82e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229775035  11 LLSYTKQLTFYVNHGNHEQALALFHHMQASLALGLDAHVFSLtLKSCTAIQRPHLGIAIHAHAAKSSLLSSPFVASALVD 90
Cdd:PLN03077  354 AVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASV-LSACACLGDLDVGVKLHELAERKGLISYVVVANALIE 432

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229775035  91 MYGKCISVSLARKLFDEIPQRSVVVWnailslyahanmlsdalrlfeamdvqpntssfNSIIAGLSELEDGFKAIAFYRK 170
Cdd:PLN03077  433 MYSKCKCIDKALEVFHNIPEKDVISW--------------------------------TSIIAGLRLNNRCFEALIFFRQ 480

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229775035 171 MqQFGLKPNLISLLALLPACVGVAALDLIKQIHGFAMRSDISSHLQLGSGLVEAYGRCGCLSYAHNVFDSmKERDVVAWS 250
Cdd:PLN03077  481 M-LLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNS-HEKDVVSWN 558

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229775035 251 SLISAHALHGEARTALNIFQQMELAEVHPDEITFIGVLKACSHVGLADKALDYFSRMQRDYGLKASSDHYSCLVDVLGRA 330
Cdd:PLN03077  559 ILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRA 638

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229775035 331 GRLHEAFDIIREMPVRATAKAWGALLGACRIYGELELAEIAGKALFEIEPENAANYVLLAKMFASVGRHEEAQRMRREMK 410
Cdd:PLN03077  639 GKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMR 718

                         410
                  ....*....|...
gi 1229775035 411 ERRVKVVPGSSWV 423
Cdd:PLN03077  719 ENGLTVDPGCSWV 731
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 11-427 7.02e-77

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 252.48  E-value: 7.02e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229775035  11 LLSYTKQLTFYVNHGNHEQALALFHHMQASLAlGLDAHVFSLTLKSCTAIQRPHLGIAIHAHAAKSSLLSSPFVASALVD 90
Cdd:PLN03081  189 LASWGTIIGGLVDAGNYREAFALFREMWEDGS-DAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALID 267

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229775035  91 MYGKCISVSLARKLFDEIPQRSVVVWNAILSLYAhanmlsdalrlfeamdvqpntssfnsiIAGLSEledgfKAIAFYRK 170
Cdd:PLN03081  268 MYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYA---------------------------LHGYSE-----EALCLYYE 315

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229775035 171 MQQFGLKPNLISLLALLPACVGVAALDLIKQIHGFAMRSDISSHLQLGSGLVEAYGRCGCLSYAHNVFDSMKERDVVAWS 250
Cdd:PLN03081  316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWN 395

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229775035 251 SLISAHALHGEARTALNIFQQMELAEVHPDEITFIGVLKACSHVGLADKALDYFSRMQRDYGLKASSDHYSCLVDVLGRA 330
Cdd:PLN03081  396 ALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGRE 475

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229775035 331 GRLHEAFDIIREMPVRATAKAWGALLGACRIYGELELAEIAGKALFEIEPENAANYVLLAKMFASVGRHEEAQRMRREMK 410
Cdd:PLN03081  476 GLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLK 555

                         410
                  ....*....|....*..
gi 1229775035 411 ERRVKVVPGSSWVVYQD 427
Cdd:PLN03081  556 RKGLSMHPACTWIEVKK 572
PLN03077 PLN03077
Protein ECB2; Provisional
 24-359 5.21e-22

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 98.77  E-value: 5.21e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229775035  24 HGNHEQALALFHHMQaSLALGLDAHVFSLTLKSCTAIQRPHLGIAIHAHAAKSSLLSSPFVASALVDMYGKCISVSLARK 103
Cdd:PLN03077   64 HGQLEQALKLLESMQ-ELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWY 142

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229775035 104 LFDEIPQRSVVVWNAILSLYAHANMLSDALRLfeamdvqpntssfnsiiaglseledgfkaiafYRKMQQFGLKPNLISL 183
Cdd:PLN03077  143 VFGKMPERDLFSWNVLVGGYAKAGYFDEALCL--------------------------------YHRMLWAGVRPDVYTF 190

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229775035 184 LALLPACVGVAALDLIKQIHGFAMRSDISSHLQLGSGLVEAYGRCGCLSYAHNVFDSMKERDVVAWSSLISAHALHGEAR 263
Cdd:PLN03077  191 PCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECL 270

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229775035 264 TALNIFQQMELAEVHPDEITFIGVLKAC---SHVGLADKALDYFSRMqrdyGLKASSDHYSCLVDVLGRAGRLHEAFDII 340
Cdd:PLN03077  271 EGLELFFTMRELSVDPDLMTITSVISACellGDERLGREMHGYVVKT----GFAVDVSVCNSLIQMYLSLGSWGEAEKVF 346

                         330
                  ....*....|....*....
gi 1229775035 341 REMPVRaTAKAWGALLGAC 359
Cdd:PLN03077  347 SRMETK-DAVSWTAMISGY 364
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 131-359 1.07e-14

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 76.45  E-value: 1.07e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229775035  131 DALRLFEAMDVqPNTSSFNSIIAGLSELEDGFKAIAFYRKMQQFGLKPNLISLLALLPACVGVAALDLIKQIHGFAMRSD 210
Cdd:PLN03218   424 EAFRFAKLIRN-PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG 502

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229775035  211 ISSHLQLGSGLVEAYGRCGCLSYAHNVFDSMKERDV----VAWSSLISAHALHGEARTALNIFQQMElAEVHP---DEIT 283
Cdd:PLN03218   503 VEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVkpdrVVFNALISACGQSGAVDRAFDVLAEMK-AETHPidpDHIT 581

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229775035  284 FIGVLKACSHVGLADKALDYFsRMQRDYGLKASSDHY-----------------------------------SCLVDVLG 328
Cdd:PLN03218   582 VGALMKACANAGQVDRAKEVY-QMIHEYNIKGTPEVYtiavnscsqkgdwdfalsiyddmkkkgvkpdevffSALVDVAG 660

                          250       260       270
                   ....*....|....*....|....*....|....
gi 1229775035  329 RAGRLHEAFDIIREMPVRAT---AKAWGALLGAC 359
Cdd:PLN03218   661 HAGDLDKAFEILQDARKQGIklgTVSYSSLMGAC 694
E_motif pfam20431
E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) ...
 362-423 3.38e-10

E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) proteins which contain a DYW deaminase domain. The DYW domain is required for RNA editing, a process that deaminates specific cytidines to uridines. This motif, together with the E+ motif, precedes the DYW domain and, although their role is not clear, they are essential in the RNA editing reaction. The E/E+ motifs may contain two degenerate PPR motifs that could be involved in RNA or protein binding.


Pssm-ID: 466580 [Multi-domain]  Cd Length: 63  Bit Score: 55.63  E-value: 3.38e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1229775035 362 YGELELAEIAGKALFEIEPENAANYVLLAKMFASVGRHEEAQRMRREMKERRVKVVPGSSWV 423
Cdd:pfam20431   1 YSNVELAEKAANILLELEKTNDGNYTLLSNIYAYAGRWKDVERIRKLMKSSGIKKRPGCSWI 62
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 140-343 2.16e-08

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 56.42  E-value: 2.16e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229775035  140 DVQPNTSSFNSIIAGLSE---LEDGFKAIAfYRKMQQFGLKPNLISLLALLPACVGVAALDLIKQIHGFAMRSDISSHLQ 216
Cdd:PLN03218   537 NVKPDRVVFNALISACGQsgaVDRAFDVLA-EMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPE 615

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229775035  217 LGSGLVEAYGRCGCLSYAHNVFDSMKERDV----VAWSSLISAHALHGEARTALNIFQQMELAEVHPDEITFIGVLKACS 292
Cdd:PLN03218   616 VYTIAVNSCSQKGDWDFALSIYDDMKKKGVkpdeVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACS 695

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1229775035  293 HVGLADKALDYFSRMqRDYGLKASSDHYSCLVDVLGRAGRLHEAFDIIREM 343
Cdd:PLN03218   696 NAKNWKKALELYEDI-KSIKLRPTVSTMNALITALCEGNQLPKALEVLSEM 745
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 111-155 1.17e-07

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 48.13  E-value: 1.17e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1229775035 111 RSVVVWNAILSLYAHANMLSDALRLFEAM---DVQPNTSSFNSIIAGL 155
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMkkrGVKPNVYTYTILINGL 48
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 129-368 5.42e-07

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 52.19  E-value: 5.42e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229775035  129 LSDALRLFEAMD-------VQPNTSSFNSIIAGLSELEDGFkaiAFYRKMqqfgLKPNLISLLALLPACVGVAALDLIKQ 201
Cdd:PLN03218   386 IKDCIDLLEDMEkrglldmDKIYHAKFFKACKKQRAVKEAF---RFAKLI----RNPTLSTFNMLMSVCASSQDIDGALR 458

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229775035  202 IHGFAMRSDISSHLQLGSGLVEAYGRCGCLSYAHNVFDSMK----ERDVVAWSSLISAHALHGEARTALNIFQQMELAEV 277
Cdd:PLN03218   459 VLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVnagvEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNV 538

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229775035  278 HPDEITFIGVLKACSHVGLADKALDYFSRMqrdyglKASS-----DH--YSCLVDVLGRAG---RLHEAFDIIREMPVRA 347
Cdd:PLN03218   539 KPDRVVFNALISACGQSGAVDRAFDVLAEM------KAEThpidpDHitVGALMKACANAGqvdRAKEVYQMIHEYNIKG 612

                          250       260
                   ....*....|....*....|.
gi 1229775035  348 TAKAWGALLGACRIYGELELA 368
Cdd:PLN03218   613 TPEVYTIAVNSCSQKGDWDFA 633
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 244-293 3.78e-06

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 43.51  E-value: 3.78e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1229775035 244 RDVVAWSSLISAHALHGEARTALNIFQQMELAEVHPDEITFIGVLKACSH 293
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 86-190 4.89e-06

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 49.11  E-value: 4.89e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229775035   86 SALVDMYGKCISVSLARKLFDEIP----QRSVVVWNAILSLYAHANMLSDALRLFE---AMDVQPNTSSFNSIIAGLSEL 158
Cdd:PLN03218   653 SALVDVAGHAGDLDKAFEILQDARkqgiKLGTVSYSSLMGACSNAKNWKKALELYEdikSIKLRPTVSTMNALITALCEG 732

                           90       100       110
                   ....*....|....*....|....*....|..
gi 1229775035  159 EDGFKAIAFYRKMQQFGLKPNLISLLALLPAC 190
Cdd:PLN03218   733 NQLPKALEVLSEMKRLGLCPNTITYSILLVAS 764
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 143-190 2.30e-04

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 38.50  E-value: 2.30e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1229775035 143 PNTSSFNSIIAGLSELEDGFKAIAFYRKMQQFGLKPNLISLLALLPAC 190
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 312-343 2.63e-04

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 38.10  E-value: 2.63e-04
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1229775035 312 GLKASSDHYSCLVDVLGRAGRLHEAFDIIREM 343
Cdd:pfam12854   2 GLKPDVVTYNTLINGLCRAGRVDEAFELLDEM 33
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 320-343 3.11e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 35.12  E-value: 3.11e-03
                          10        20
                  ....*....|....*....|....
gi 1229775035 320 YSCLVDVLGRAGRLHEAFDIIREM 343
Cdd:TIGR00756   3 YNTLIDGLCKAGRVEEALELFKEM 26
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 257-402 4.09e-03

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 39.59  E-value: 4.09e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229775035 257 ALHGEARTALNIFQQMELAEVHPDEItfigvlKACSHVGLADKALDYFSRMQRDYGLKAssDHYSCLVDVLGRAGRLHEA 336
Cdd:COG3914    60 LALAAGEAAAAAAALLLLAALLELAA------LLLQALGRYEEALALYRRALALNPDNA--EALFNLGNLLLALGRLEEA 131

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229775035 337 FD----IIREMPvrATAKAWGALLGACRIYGELELAEIAGKALFEIEPENAANYVLLAKMFASVGRHEEA 402
Cdd:COG3914   132 LAalrrALALNP--DFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEA 199
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 147-179 4.14e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 34.74  E-value: 4.14e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1229775035 147 SFNSIIAGLSELEDGFKAIAFYRKMQQFGLKPN 179
Cdd:TIGR00756   2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 298-402 6.38e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 38.17  E-value: 6.38e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229775035 298 DKALDYFSRMQRDYGlkaSSDHYSC-LVDVLGRAGRLHEAFDIIREMpVRATAKAWGALLGACRIY---GELELAEIAGK 373
Cdd:COG2956   127 EKAIEVLERLLKLGP---ENAHAYCeLAELYLEQGDYDEAIEALEKA-LKLDPDCARALLLLAELYleqGDYEEAIAALE 202

                          90       100
                  ....*....|....*....|....*....
gi 1229775035 374 ALFEIEPENAANYVLLAKMFASVGRHEEA 402
Cdd:COG2956   203 RALEQDPDYLPALPRLAELYEKLGDPEEA 231
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 114-139 9.62e-03

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 33.59  E-value: 9.62e-03
                          10        20
                  ....*....|....*....|....*.
gi 1229775035 114 VVWNAILSLYAHANMLSDALRLFEAM 139
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEM 26
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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