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Conserved domains on  [gi|1191013498|ref|XP_020871204|]
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homeobox-leucine zipper protein HAT2 [Arabidopsis lyrata subsp. lyrata]

Protein Classification

homeobox domain-containing protein( domain architecture ID 11151467)

homeobox domain-containing protein may be involved in the transcriptional regulation of key eukaryotic developmental processes

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HD-ZIP_N pfam04618
HD-ZIP protein N terminus; This family consists of the N termini of plant homeobox-leucine ...
 8-91 4.12e-29

HD-ZIP protein N terminus; This family consists of the N termini of plant homeobox-leucine zipper proteins. Its function is unknown.


:

Pssm-ID: 461370  Cd Length: 99  Bit Score: 106.35  E-value: 4.12e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191013498   8 LGLSLSLGFSQNSNP--LQLNLNP----NSSLSNNLQRYPWNQTFAP---TSD----LRKIDVNSFPST---TNCEEETG 71
Cdd:pfam04618   1 LGLSLSLSLSQNHHPhsLRLNLMPssspSSSSSLFHQKNSWNDLFQSsdrASDtrsfLRGIDVNRAPSGaavRDEEEEAG 80

                          90       100
                  ....*....|....*....|
gi 1191013498  72 VSSPNSTISStISGKRSERE 91
Cdd:pfam04618  81 VSSPNSTISS-VSGKRSERE 99
HALZ smart00340
homeobox associated leucin zipper;
185-228 2.53e-22

homeobox associated leucin zipper;


:

Pssm-ID: 128634  Cd Length: 44  Bit Score: 87.12  E-value: 2.53e-22
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 1191013498  185 KQTEVDCEYLKRCVEKLTEENRRLQKEAMELRTLKLSPQFYGQM 228
Cdd:smart00340   1 KQTEVDCELLKRCCESLTEENRRLQKEVQELRALKLSPPLYMQH 44
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 129-183 6.19e-16

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


:

Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 70.36  E-value: 6.19e-16
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1191013498  129 RKKLRLSKDQSAFLEETFKEHNTLNPKQKLALAKKLNLTARQVEVWFQNRRARTK 183
Cdd:smart00389   3 RKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
 
Name Accession Description Interval E-value
HD-ZIP_N pfam04618
HD-ZIP protein N terminus; This family consists of the N termini of plant homeobox-leucine ...
 8-91 4.12e-29

HD-ZIP protein N terminus; This family consists of the N termini of plant homeobox-leucine zipper proteins. Its function is unknown.


Pssm-ID: 461370  Cd Length: 99  Bit Score: 106.35  E-value: 4.12e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191013498   8 LGLSLSLGFSQNSNP--LQLNLNP----NSSLSNNLQRYPWNQTFAP---TSD----LRKIDVNSFPST---TNCEEETG 71
Cdd:pfam04618   1 LGLSLSLSLSQNHHPhsLRLNLMPssspSSSSSLFHQKNSWNDLFQSsdrASDtrsfLRGIDVNRAPSGaavRDEEEEAG 80

                          90       100
                  ....*....|....*....|
gi 1191013498  72 VSSPNSTISStISGKRSERE 91
Cdd:pfam04618  81 VSSPNSTISS-VSGKRSERE 99
HALZ smart00340
homeobox associated leucin zipper;
185-228 2.53e-22

homeobox associated leucin zipper;


Pssm-ID: 128634  Cd Length: 44  Bit Score: 87.12  E-value: 2.53e-22
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 1191013498  185 KQTEVDCEYLKRCVEKLTEENRRLQKEAMELRTLKLSPQFYGQM 228
Cdd:smart00340   1 KQTEVDCELLKRCCESLTEENRRLQKEVQELRALKLSPPLYMQH 44
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 129-183 6.19e-16

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 70.36  E-value: 6.19e-16
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1191013498  129 RKKLRLSKDQSAFLEETFKEHNTLNPKQKLALAKKLNLTARQVEVWFQNRRARTK 183
Cdd:smart00389   3 RKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
Homeodomain pfam00046
Homeodomain;
129-183 1.03e-15

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 69.84  E-value: 1.03e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1191013498 129 RKKLRLSKDQSAFLEETFKEHNTLNPKQKLALAKKLNLTARQVEVWFQNRRARTK 183
Cdd:pfam00046   2 RKRTTFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWK 56
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 129-186 1.34e-15

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 69.58  E-value: 1.34e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1191013498 129 RKKLRLSKDQSAFLEETFKEHNTLNPKQKLALAKKLNLTARQVEVWFQNRRARTKLKQ 186
Cdd:cd00086     2 RKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRSE 59
COG5576 COG5576
Homeodomain-containing transcription factor [Transcription];
116-210 6.70e-10

Homeodomain-containing transcription factor [Transcription];


Pssm-ID: 227863 [Multi-domain]  Cd Length: 156  Bit Score: 56.68  E-value: 6.70e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191013498 116 GTSDEEEDGGETS---RKKLRLSKDQSAFLEETFKEHNTLNPKQKLALAKKLNLTARQVEVWFQNRRARTKLKQTEVDCE 192
Cdd:COG5576    37 SEMKLERKQDGSSppkSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKKRSGKVEQ 116

                          90
                  ....*....|....*...
gi 1191013498 193 YLKrcvekltEENRRLQK 210
Cdd:COG5576   117 RPG-------EEEADLAK 127
HALZ pfam02183
Homeobox associated leucine zipper;
185-219 1.74e-07

Homeobox associated leucine zipper;


Pssm-ID: 460477 [Multi-domain]  Cd Length: 42  Bit Score: 46.74  E-value: 1.74e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1191013498 185 KQTEVDCEYLKRCVEKLT-------EENRRLQKEAMELRTLK 219
Cdd:pfam02183   1 KQLERDYDVLKASYDALKsdfdslkKENQKLQAELQELKEKL 42
 
Name Accession Description Interval E-value
HD-ZIP_N pfam04618
HD-ZIP protein N terminus; This family consists of the N termini of plant homeobox-leucine ...
 8-91 4.12e-29

HD-ZIP protein N terminus; This family consists of the N termini of plant homeobox-leucine zipper proteins. Its function is unknown.


Pssm-ID: 461370  Cd Length: 99  Bit Score: 106.35  E-value: 4.12e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191013498   8 LGLSLSLGFSQNSNP--LQLNLNP----NSSLSNNLQRYPWNQTFAP---TSD----LRKIDVNSFPST---TNCEEETG 71
Cdd:pfam04618   1 LGLSLSLSLSQNHHPhsLRLNLMPssspSSSSSLFHQKNSWNDLFQSsdrASDtrsfLRGIDVNRAPSGaavRDEEEEAG 80

                          90       100
                  ....*....|....*....|
gi 1191013498  72 VSSPNSTISStISGKRSERE 91
Cdd:pfam04618  81 VSSPNSTISS-VSGKRSERE 99
HALZ smart00340
homeobox associated leucin zipper;
185-228 2.53e-22

homeobox associated leucin zipper;


Pssm-ID: 128634  Cd Length: 44  Bit Score: 87.12  E-value: 2.53e-22
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 1191013498  185 KQTEVDCEYLKRCVEKLTEENRRLQKEAMELRTLKLSPQFYGQM 228
Cdd:smart00340   1 KQTEVDCELLKRCCESLTEENRRLQKEVQELRALKLSPPLYMQH 44
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 129-183 6.19e-16

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 70.36  E-value: 6.19e-16
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1191013498  129 RKKLRLSKDQSAFLEETFKEHNTLNPKQKLALAKKLNLTARQVEVWFQNRRARTK 183
Cdd:smart00389   3 RKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
Homeodomain pfam00046
Homeodomain;
129-183 1.03e-15

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 69.84  E-value: 1.03e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1191013498 129 RKKLRLSKDQSAFLEETFKEHNTLNPKQKLALAKKLNLTARQVEVWFQNRRARTK 183
Cdd:pfam00046   2 RKRTTFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWK 56
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 129-186 1.34e-15

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 69.58  E-value: 1.34e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1191013498 129 RKKLRLSKDQSAFLEETFKEHNTLNPKQKLALAKKLNLTARQVEVWFQNRRARTKLKQ 186
Cdd:cd00086     2 RKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRSE 59
COG5576 COG5576
Homeodomain-containing transcription factor [Transcription];
116-210 6.70e-10

Homeodomain-containing transcription factor [Transcription];


Pssm-ID: 227863 [Multi-domain]  Cd Length: 156  Bit Score: 56.68  E-value: 6.70e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191013498 116 GTSDEEEDGGETS---RKKLRLSKDQSAFLEETFKEHNTLNPKQKLALAKKLNLTARQVEVWFQNRRARTKLKQTEVDCE 192
Cdd:COG5576    37 SEMKLERKQDGSSppkSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKKRSGKVEQ 116

                          90
                  ....*....|....*...
gi 1191013498 193 YLKrcvekltEENRRLQK 210
Cdd:COG5576   117 RPG-------EEEADLAK 127
HALZ pfam02183
Homeobox associated leucine zipper;
185-219 1.74e-07

Homeobox associated leucine zipper;


Pssm-ID: 460477 [Multi-domain]  Cd Length: 42  Bit Score: 46.74  E-value: 1.74e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1191013498 185 KQTEVDCEYLKRCVEKLT-------EENRRLQKEAMELRTLK 219
Cdd:pfam02183   1 KQLERDYDVLKASYDALKsdfdslkKENQKLQAELQELKEKL 42
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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