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Conserved domains on  [gi|1162475987|ref|XP_020393145|]
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uncharacterized protein LOC103627723 isoform X1 [Zea mays]

Protein Classification

Dev_Cell_Death domain-containing protein( domain architecture ID 10565563)

Dev_Cell_Death domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Dev_Cell_Death pfam10539
Development and cell death domain; The DCD domain is found in plant proteins involved in ...
 172-292 1.38e-68

Development and cell death domain; The DCD domain is found in plant proteins involved in development and cell death. The DCD domain is an approximately 130 amino acid long stretch that contains several mostly invariable motifs. These include a FGLP and a LFL motif at the N-terminus and a PAQV and a PLxE motif towards the C-terminus of the domain. The DCD domain is present in proteins with different architectures. Some of these proteins contain additional recognisable motifs, like the KELCH repeats or the ParB domain.


:

Pssm-ID: 463141  Cd Length: 126  Bit Score: 215.08  E-value: 1.38e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162475987 172 FIFMCSARTKPECYQNGVFGLPRGKMDVVEKIQRGTKLFLYDFDLKLLYGVYKADTRGGLDLVRHAF---DGKFPAQVKF 248
Cdd:pfam10539   3 VIFMCNGKTKPECFRYQLFGLPAGHKDFVKKIKPGLPLFLFDYDLRLLYGIFEAASDGGMNIEPYAFtssGGPFPAQVRF 82

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1162475987 249 SVFKDCLPIPESSFKHAIKENYSSKGRFTQELNTKQVQRLLALF 292
Cdd:pfam10539  83 KIRKDCLPLPESEFKPAIKDNYYTKNKFRFELSHAQVRKLLSLF 126
 
Name Accession Description Interval E-value
Dev_Cell_Death pfam10539
Development and cell death domain; The DCD domain is found in plant proteins involved in ...
 172-292 1.38e-68

Development and cell death domain; The DCD domain is found in plant proteins involved in development and cell death. The DCD domain is an approximately 130 amino acid long stretch that contains several mostly invariable motifs. These include a FGLP and a LFL motif at the N-terminus and a PAQV and a PLxE motif towards the C-terminus of the domain. The DCD domain is present in proteins with different architectures. Some of these proteins contain additional recognisable motifs, like the KELCH repeats or the ParB domain.


Pssm-ID: 463141  Cd Length: 126  Bit Score: 215.08  E-value: 1.38e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162475987 172 FIFMCSARTKPECYQNGVFGLPRGKMDVVEKIQRGTKLFLYDFDLKLLYGVYKADTRGGLDLVRHAF---DGKFPAQVKF 248
Cdd:pfam10539   3 VIFMCNGKTKPECFRYQLFGLPAGHKDFVKKIKPGLPLFLFDYDLRLLYGIFEAASDGGMNIEPYAFtssGGPFPAQVRF 82

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1162475987 249 SVFKDCLPIPESSFKHAIKENYSSKGRFTQELNTKQVQRLLALF 292
Cdd:pfam10539  83 KIRKDCLPLPESEFKPAIKDNYYTKNKFRFELSHAQVRKLLSLF 126
DCD smart00767
DCD is a plant specific domain in proteins involved in development and programmed cell death; ...
 172-294 9.71e-61

DCD is a plant specific domain in proteins involved in development and programmed cell death; The domain is shared by several proteins in the Arabidopsis and the rice genomes, which otherwise show a different protein architecture. Biological studies indicate a role of these proteins in phytohormone response, embryo development and programmed cell death by pathogens or ozone.


Pssm-ID: 214811  Cd Length: 132  Bit Score: 195.18  E-value: 9.71e-61
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162475987  172 FIFMCSARTKPECYQNGVFGLPRGKMDVVEKIQRGTKLFLYDFDLKLLYGVYKADTRGGLDLVRHAFDGK----FPAQVK 247
Cdd:smart00767   6 YIFMCNNDTKEECFRRQLFGLPRGYRDFVRNIKPGLPLFLYNYDTRKLHGIFEATSFGGLNIDPNAFEGKkesrFPAQVR 85

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 1162475987  248 FSVFKDCLPIPESSFKHAIKENYSSKGRFTQELNTKQVQRLLALFKP 294
Cdd:smart00767  86 FRIRKDCKPLPESEFRSAILENYDGPSKFRFELSHAQVLRLLDLFAP 132
 
Name Accession Description Interval E-value
Dev_Cell_Death pfam10539
Development and cell death domain; The DCD domain is found in plant proteins involved in ...
 172-292 1.38e-68

Development and cell death domain; The DCD domain is found in plant proteins involved in development and cell death. The DCD domain is an approximately 130 amino acid long stretch that contains several mostly invariable motifs. These include a FGLP and a LFL motif at the N-terminus and a PAQV and a PLxE motif towards the C-terminus of the domain. The DCD domain is present in proteins with different architectures. Some of these proteins contain additional recognisable motifs, like the KELCH repeats or the ParB domain.


Pssm-ID: 463141  Cd Length: 126  Bit Score: 215.08  E-value: 1.38e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162475987 172 FIFMCSARTKPECYQNGVFGLPRGKMDVVEKIQRGTKLFLYDFDLKLLYGVYKADTRGGLDLVRHAF---DGKFPAQVKF 248
Cdd:pfam10539   3 VIFMCNGKTKPECFRYQLFGLPAGHKDFVKKIKPGLPLFLFDYDLRLLYGIFEAASDGGMNIEPYAFtssGGPFPAQVRF 82

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1162475987 249 SVFKDCLPIPESSFKHAIKENYSSKGRFTQELNTKQVQRLLALF 292
Cdd:pfam10539  83 KIRKDCLPLPESEFKPAIKDNYYTKNKFRFELSHAQVRKLLSLF 126
DCD smart00767
DCD is a plant specific domain in proteins involved in development and programmed cell death; ...
 172-294 9.71e-61

DCD is a plant specific domain in proteins involved in development and programmed cell death; The domain is shared by several proteins in the Arabidopsis and the rice genomes, which otherwise show a different protein architecture. Biological studies indicate a role of these proteins in phytohormone response, embryo development and programmed cell death by pathogens or ozone.


Pssm-ID: 214811  Cd Length: 132  Bit Score: 195.18  E-value: 9.71e-61
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162475987  172 FIFMCSARTKPECYQNGVFGLPRGKMDVVEKIQRGTKLFLYDFDLKLLYGVYKADTRGGLDLVRHAFDGK----FPAQVK 247
Cdd:smart00767   6 YIFMCNNDTKEECFRRQLFGLPRGYRDFVRNIKPGLPLFLYNYDTRKLHGIFEATSFGGLNIDPNAFEGKkesrFPAQVR 85

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 1162475987  248 FSVFKDCLPIPESSFKHAIKENYSSKGRFTQELNTKQVQRLLALFKP 294
Cdd:smart00767  86 FRIRKDCKPLPESEFRSAILENYDGPSKFRFELSHAQVLRLLDLFAP 132
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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