|
Name |
Accession |
Description |
Interval |
E-value |
| Ndc80_HEC |
pfam03801 |
HEC/Ndc80p family; Members of this family are components of the mitotic spindle. It has been ... |
1-93 |
9.42e-40 |
|
HEC/Ndc80p family; Members of this family are components of the mitotic spindle. It has been shown that Ndc80/HEC from yeast is part of a complex called the Ndc80p complex. This complex is thought to bind to the microtubules of the spindle.
Pssm-ID: 461058 Cd Length: 159 Bit Score: 141.66 E-value: 9.42e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 1 MKSLQAPSVKDFLKIFTFLYGFLCPSYELPDtKFEEEVPRIFKDLGYPFA--LSKSSMYTVGAPHTWPHIVAALVWLIDC 78
Cdd:pfam03801 66 PKLLKSPTQKDFNSIFKFLYHRLDPSYEFQK-KIEEEVPMILKQLRYPFLdsISKSQLSAVGGPHTWPTFLGLLHWLVEL 144
|
90
....*....|....*
gi 1149834415 79 IKIHTAMKESSPLFD 93
Cdd:pfam03801 145 AKFLEALEQNLYDDD 159
|
|
| DUF5595 |
pfam18077 |
Domain of unknown function (DUF5595); This domain is found in Nude C 80 (Ndc80) proteins which ... |
100-172 |
3.83e-25 |
|
Domain of unknown function (DUF5595); This domain is found in Nude C 80 (Ndc80) proteins which can be found in species such as Homo sapiens. Ndc80 protein complexes are a core component of the end-on attachment sites for kinetochore microtubules. Ndc80 is also known as Hec1, for highly expressed in cancer 1.
Pssm-ID: 465636 [Multi-domain] Cd Length: 73 Bit Score: 98.54 E-value: 3.83e-25
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1149834415 100 EETEDGIMHNKLFLDYTIKCYESFMNGADSFEDMNAELQSKLKDLFNVDASKLESLEARNKALNEQITRLEQE 172
Cdd:pfam18077 1 EEIEDGIEYNKLFLDYTVKCYNKFMQGEDTFEEEDAELLSKLKELYNVDEALIESLEEEHKRLNEEIERLEKE 73
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
136-424 |
1.88e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.92 E-value: 1.88e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 136 ELQSKLKDLfnvdasKLESLEARNKALNEQITRLEQEREKEPNRLESLRKLKASLQGDVQKYQAYMSNLESHSAILDQKL 215
Cdd:TIGR02168 217 ELKAELREL------ELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKEL 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 216 NGLNEEIARVELEYEAIKQEntrlqnivdnQKYSVADIERINHERNELQQTINKLTKDLEAEQQKLWNEELKYARGKEAI 295
Cdd:TIGR02168 291 YALANEISRLEQQKQILRER----------LANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAEL 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 296 ETQLAEYHKLARKLKLIPKGAENSKGYDFEIKFNPEAGANCLVKYRAQVY---VPLKELLNETEEEINKALNKKMG-LED 371
Cdd:TIGR02168 361 EELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLErleDRRERLQQEIEELLKKLEEAELKeLQA 440
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 1149834415 372 TLEQLNAMITESKRSVKTLKEEVQKLDDLY---QQKVKEAEEEDEKGANELESLEK 424
Cdd:TIGR02168 441 ELEELEEELEELQEELERLEEALEELREELeeaEQALDAAERELAQLQARLDSLER 496
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
136-477 |
6.06e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.79 E-value: 6.06e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 136 ELQSKLKDLfnvdASKLESLEARNKALNEQITRLEQEREKEPNRLESLRKLKASLQGDVQKYQAYMSNLESHSAILDQKL 215
Cdd:COG1196 236 ELEAELEEL----EAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERR 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 216 NGLNEEIARVELEYEAIKQE----NTRLQNIVDNQKYSVADIERINHERNELQQTINKLTKDLEAEQQKLWNEELKYARG 291
Cdd:COG1196 312 RELEERLEELEEELAELEEEleelEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEA 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 292 KEAIETQLAEYHKLARKLKLIPKGAENSKGYDFEIKFNPEAganclvkyraqvyvpLKELLNETEEEINKALNKKMGLED 371
Cdd:COG1196 392 LRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAE---------------LEEEEEEEEEALEEAAEEEAELEE 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 372 TLEQLNAMITESKRSVKTLKEEVQKLDDLYQQKVKEAEEEDEKGANELESLEKHKHLLQSTVNEGLSEAMNELDAVQREY 451
Cdd:COG1196 457 EEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAY 536
|
330 340
....*....|....*....|....*.
gi 1149834415 452 QLVVQTTTEERRKVGNNLQHLVEMAA 477
Cdd:COG1196 537 EAALEAALAAALQNIVVEDDEVAAAA 562
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
151-463 |
6.42e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.93 E-value: 6.42e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 151 KLESLEARNKALNEQITRLEQEREKepnrLESLRKLKASLQ--------GDVQKYQAYMSNLESHSAILDQKLNGLNEEI 222
Cdd:TIGR02169 185 NIERLDLIIDEKRQQLERLRREREK----AERYQALLKEKReyegyellKEKEALERQKEAIERQLASLEEELEKLTEEI 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 223 ARVELEYEAI----KQENTRLQNIVDNQKYSV-ADIERINHERNELQQTI---NKLTKDLEAEQQKLWNEELKYARGKEA 294
Cdd:TIGR02169 261 SELEKRLEEIeqllEELNKKIKDLGEEEQLRVkEKIGELEAEIASLERSIaekERELEDAEERLAKLEAEIDKLLAEIEE 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 295 IETQLAEYHKlaRKLKLIPKGAENSKGYDfEIKFNPEAGANCLVKYRAQVyVPLKELLNETEEEINKALNKKMGLEDTLE 374
Cdd:TIGR02169 341 LEREIEEERK--RRDKLTEEYAELKEELE-DLRAELEEVDKEFAETRDEL-KDYREKLEKLKREINELKRELDRLQEELQ 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 375 QLNAMITESKRSVKTLKEEVQKLDDLY---QQKVKEAEEEDEKGANELESLEKHKHLLQST---VNEGLSEAMNELDAVQ 448
Cdd:TIGR02169 417 RLSEELADLNAAIAGIEAKINELEEEKedkALEIKKQEWKLEQLAADLSKYEQELYDLKEEydrVEKELSKLQRELAEAE 496
|
330
....*....|....*
gi 1149834415 449 REYQLVVQTTTEERR 463
Cdd:TIGR02169 497 AQARASEERVRGGRA 511
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
120-450 |
6.43e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.91 E-value: 6.43e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 120 YESFMNGADSFEDMNAELQSKLKDLFNVDAS------KLESLEARNKALNEQITRLEQEREKEPNRLESLRKLK------ 187
Cdd:TIGR02168 704 RKELEELEEELEQLRKELEELSRQISALRKDlarleaEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELaeaeae 783
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 188 -ASLQGDVQKYQAYMSNLESHSAILDQKLNGLNEEIARVELEYEAIKQE----NTRLQNIVDNQKYSVADIERINHERNE 262
Cdd:TIGR02168 784 iEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRiaatERRLEDLEEQIEELSEDIESLAAEIEE 863
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 263 LQQTINKLTKDLEAEQQklwneelKYARGKEAIETQLAEYHKLARKLklipKGAENSKGYdfeikfnpeaganclvkyra 342
Cdd:TIGR02168 864 LEELIEELESELEALLN-------ERASLEEALALLRSELEELSEEL----RELESKRSE-------------------- 912
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 343 qvyvpLKELLNETEEEINKALNKKMGLEDTLEQLNAMITES--------KRSVKTLKEEVQKLDD---LYQQKVKE---- 407
Cdd:TIGR02168 913 -----LRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEysltleeaEALENKIEDDEEEARRrlkRLENKIKElgpv 987
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 1149834415 408 ---AEEEDEKGANELESLEKHKHLLQSTVnEGLSEAMNELDAVQRE 450
Cdd:TIGR02168 988 nlaAIEEYEELKERYDFLTAQKEDLTEAK-ETLEEAIEEIDREARE 1032
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
131-512 |
8.40e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.53 E-value: 8.40e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 131 EDMNAELQsKLKDLFNVDASKLESLEARNKALNEQITRLEQEREKE----PNRLESLRKLKASLQGDVQKYQAYMSNLES 206
Cdd:TIGR02168 182 ERTRENLD-RLEDILNELERQLKSLERQAEKAERYKELKAELRELElallVLRLEELREELEELQEELKEAEEELEELTA 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 207 hsaildqKLNGLNEEIARVELEYEAIKQEntrlqnivdnqkysvadIERINHERNELQQTINKLTKDLEAEQQKLWNEEL 286
Cdd:TIGR02168 261 -------ELQELEEKLEELRLEVSELEEE-----------------IEELQKELYALANEISRLEQQKQILRERLANLER 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 287 KYARGKEAIEtqlaeyhKLARKLKLipkgaenskgydfeikfnpeaganclvkyraqvyvpLKELLNETEEEINKALNKK 366
Cdd:TIGR02168 317 QLEELEAQLE-------ELESKLDE------------------------------------LAEELAELEEKLEELKEEL 353
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 367 MGLEDTLEQLNAMITESKRSVKTLKEEVQKLddlyQQKVKEAEEEDEKGANELESLEKHKHLLQSTVNEGLSEAMNELDA 446
Cdd:TIGR02168 354 ESLEAELEELEAELEELESRLEELEEQLETL----RSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKK 429
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 447 VQREYQLVVQTTTEERRKVGNNLQHLVEMAATHVVSVEKHLEEQEAKVDREYEECKSE----DLLENIRE 512
Cdd:TIGR02168 430 LEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLqarlDSLERLQE 499
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
150-496 |
2.22e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.99 E-value: 2.22e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 150 SKLESLEARNKALNEQITRLEQEREKEPNRLESLRKLKASLQGDVQKyqaymsnleshsaiLDQKLNGLNEEIARVELEY 229
Cdd:TIGR02168 677 REIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEE--------------LSRQISALRKDLARLEAEV 742
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 230 EAIKQENTRLQnivdnqkysvADIERINHERNELQQTINKLTKDLEAEQQKLWNEELKYARGKEAIETQLAEYHKLARKL 309
Cdd:TIGR02168 743 EQLEERIAQLS----------KELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAEL 812
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 310 KLIPKGAENskgydfeikfnpeaganclvkyRAQVYVPLKELLNETEEEINKALNKKMGLEDTLEQLNAMITESKRSVKT 389
Cdd:TIGR02168 813 TLLNEEAAN----------------------LRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEE 870
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 390 LKEEVQKLDDLY---QQKVKEAEEEDEKGANELESLEKHKHLLQstvnEGLSEAMNELDAVQREYQLVVQTTTEERRKVG 466
Cdd:TIGR02168 871 LESELEALLNERaslEEALALLRSELEELSEELRELESKRSELR----RELEELREKLAQLELRLEGLEVRIDNLQERLS 946
|
330 340 350
....*....|....*....|....*....|
gi 1149834415 467 NNLQHLVEMAATHVVSVEKHLEEQEAKVDR 496
Cdd:TIGR02168 947 EEYSLTLEEAEALENKIEDDEEEARRRLKR 976
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
136-453 |
1.28e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.56 E-value: 1.28e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 136 ELQSKLKDL-FNVDASKLESLEARNKALNEQITRLEQErekepnrLESLRKLKASLQGDVQKYQAYMSNLESHSAILDQK 214
Cdd:COG1196 217 ELKEELKELeAELLLLKLRELEAELEELEAELEELEAE-------LEELEAELAELEAELEELRLELEELELELEEAQAE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 215 LNGLNEEIARVELEYEAIKQENTRLQnivdnqkysvADIERINHERNELQQTINKLTKDLEAEQQKLWNEELKYARGKEA 294
Cdd:COG1196 290 EYELLAELARLEQDIARLEERRRELE----------ERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAE 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 295 IETQLAEYHKLARklKLIPKGAEnskgydfeikfnpeaganclvkyRAQVYVPLKELLNETEEEINKALNKKMGLEDTLE 374
Cdd:COG1196 360 LAEAEEALLEAEA--ELAEAEEE-----------------------LEELAEELLEALRAAAELAAQLEELEEAEEALLE 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 375 QLNAMITESKRSVKTLKEEVQKLDDLYQQKVKEAEEEDEKGANELESLEKHKHLLQST--VNEGLSEAMNELDAVQREYQ 452
Cdd:COG1196 415 RLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAalLEAALAELLEELAEAAARLL 494
|
.
gi 1149834415 453 L 453
Cdd:COG1196 495 L 495
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
211-435 |
3.73e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.46 E-value: 3.73e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 211 LDQKLNGLNEEIARVELEYEAIKQENTRLQNIVDNQKYSVADIER----INHERNELQQTINKLTKDLEAEQQKLwneel 286
Cdd:COG4942 25 AEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARriraLEQELAALEAELAELEKEIAELRAEL----- 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 287 kyARGKEAIETQLAEYHKLARKLKLipkgaenskgydfEIKFNPEagaNCLVKYRAQVYvpLKELLNETEEEINKALNKK 366
Cdd:COG4942 100 --EAQKEELAELLRALYRLGRQPPL-------------ALLLSPE---DFLDAVRRLQY--LKYLAPARREQAEELRADL 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1149834415 367 MGLEDTLEQLNAMITESKRSVKTLKEEVQKLDDLYQQK---VKEAEEEDEKGANELESLEKHKHLLQSTVNE 435
Cdd:COG4942 160 AELAALRAELEAERAELEALLAELEEERAALEALKAERqklLARLEKELAELAAELAELQQEAEELEALIAR 231
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
162-500 |
4.56e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 52.63 E-value: 4.56e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 162 LNEQITRLEQEREKepnrLESLRKLKASLQG-DVQKYQAYMSNLESHSAILDQKLNGLNEEIARVELEYEAIKQENTRLQ 240
Cdd:COG1196 198 LERQLEPLERQAEK----AERYRELKEELKElEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELR 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 241 nivdnqkysvADIERINHERNELQQTINKLTKDLEAEQQKLWNEELKYARGKEAIETQLAEYHKLARKLKLipkgaensk 320
Cdd:COG1196 274 ----------LELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEE--------- 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 321 gydfeikfnpeaganclvkyraqvyvpLKELLNETEEEINKALNKKMGLEDTLEQLNAMITESKRSVKTLKEEVQKLDDL 400
Cdd:COG1196 335 ---------------------------LEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEE 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 401 YQQKVKEAEEEDEKGANELESLEKHKHLLQSTVNEGLSEAMNELDAVQREYQLvvQTTTEERRKVGNNLQHLVEMAATHV 480
Cdd:COG1196 388 LLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEE--EEALEEAAEEEAELEEEEEALLELL 465
|
330 340
....*....|....*....|
gi 1149834415 481 VSVEKHLEEQEAKVDREYEE 500
Cdd:COG1196 466 AELLEEAALLEAALAELLEE 485
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
135-424 |
1.35e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.09 E-value: 1.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 135 AELQSKLKDLFNVDASKLESLEARNKALNEQITRLEQEREKEpnrLESLRKLKASLQGDVQKYQAYMSNLESHSAILDQK 214
Cdd:COG1196 227 AELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAE---LEELRLELEELELELEEAQAEEYELLAELARLEQD 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 215 LNGLNEEIARVELEYEAIKQENTRLQnivdnqkysvADIERINHERNELQQTINKLTKDLEAEQQKLWNEELKYARGKEA 294
Cdd:COG1196 304 IARLEERRRELEERLEELEEELAELE----------EELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAE 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 295 IETQLAEYHKLARKLKLIPKGAENSKGydfeikfnpeagancLVKYRAQVYVPLKELLNETEEEINKALNKKMGLEDTLE 374
Cdd:COG1196 374 LAEAEEELEELAEELLEALRAAAELAA---------------QLEELEEAEEALLERLERLEEELEELEEALAELEEEEE 438
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 1149834415 375 QLNAMITESKRSVKTLKEEVQKLDDLYQQKVKEAEEEDEKGANELESLEK 424
Cdd:COG1196 439 EEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAE 488
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
151-463 |
3.67e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.07 E-value: 3.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 151 KLESLEARNKALNEQITRLEQEREKEPNRLESLRKLKASLQGDVQKYQAYMSNLESHSA-----ILDQKLNGLNEEIARV 225
Cdd:TIGR02169 731 EEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLShsripEIQAELSKLEEEVSRI 810
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 226 ELEYEAIKQENTRLQnivdnqkysvADIERINHERNELQQTINKLTKDLEAEQQKLWNEELKyargKEAIETQLAEYHKL 305
Cdd:TIGR02169 811 EARLREIEQKLNRLT----------LEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGK----KEELEEELEELEAA 876
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 306 ARKLKlipkgaenskgydfeikfnpeaganclvkyraQVYVPLKELLNETEEEINKALNKKMGLEDTLEQLNAMITESKR 385
Cdd:TIGR02169 877 LRDLE--------------------------------SRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKA 924
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 386 SVKTLKEEVQKLDDLYQQKVKEAEEED--EKGANELESLEKHKHLLQStVNEGLSEAMNELDAVQREYQLVVQTTTEERR 463
Cdd:TIGR02169 925 KLEALEEELSEIEDPKGEDEEIPEEELslEDVQAELQRVEEEIRALEP-VNMLAIQEYEEVLKRLDELKEKRAKLEEERK 1003
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
113-435 |
3.93e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 49.68 E-value: 3.93e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 113 LDYTIKCYESFMNGADSFED----MNAELQSKLKDLFNVDaSKLESLEARNKALNEQITRLEQEREKepnrLESLRKLKA 188
Cdd:PRK03918 174 IKRRIERLEKFIKRTENIEElikeKEKELEEVLREINEIS-SELPELREELEKLEKEVKELEELKEE----IEELEKELE 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 189 SLQGDVQKYQAYMSNLESHSAILDQKLNGLNEEIARVElEYEAIKQENTRLQNIVDNQKYSVADIE----RINHERNELQ 264
Cdd:PRK03918 249 SLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELK-ELKEKAEEYIKLSEFYEEYLDELREIEkrlsRLEEEINGIE 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 265 QTINKLTKDlEAEQQKLWNEELKYARGKEAIETQLAEYHKLARKLKLIPKGAENSKGYdfeikfNPEAGANCLVKyraqv 344
Cdd:PRK03918 328 ERIKELEEK-EERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGL------TPEKLEKELEE----- 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 345 yvpLKELLNETEEEINKALNKKMGLEDTLEQLNAMITESKRSVKT-------LKEEVQK-LDDLYQQKVKEAEEEDEKGA 416
Cdd:PRK03918 396 ---LEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKcpvcgreLTEEHRKeLLEEYTAELKRIEKELKEIE 472
|
330
....*....|....*....
gi 1149834415 417 NELESLEKHKHLLQSTVNE 435
Cdd:PRK03918 473 EKERKLRKELRELEKVLKK 491
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
128-310 |
4.26e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.55 E-value: 4.26e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 128 DSFEDMNAELQSKLKDLFNVDAS------KLESLEARNKALNEQITRLEQEREKEPNRLESLRKLKASLQGDVQKYQAYM 201
Cdd:COG1196 274 LELEELELELEEAQAEEYELLAElarleqDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEEL 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 202 S----NLESHSAILDQKLNGLNEEIARVELEYEAIKQENTRLQNIVDNQKYSVADIERINHERNELQQTINKLTKDLEAE 277
Cdd:COG1196 354 EeaeaELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAEL 433
|
170 180 190
....*....|....*....|....*....|...
gi 1149834415 278 QQKLWNEELKYARGKEAIETQLAEYHKLARKLK 310
Cdd:COG1196 434 EEEEEEEEEALEEAAEEEAELEEEEEALLELLA 466
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
135-515 |
8.52e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 48.61 E-value: 8.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 135 AELQSKLKDLFNVDASKLESLEARNKALNEQITRLEQERE---KEPNRLESLRKLKASLQGDVQKYQAYMSNLESHSAIL 211
Cdd:COG4717 49 ERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEeyaELQEELEELEEELEELEAELEELREELEKLEKLLQLL 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 212 D--QKLNGLNEEIARVELEYEAIKQENTRLQNIVDNQKYSVADIERINHERNEL--------QQTINKLTKDLEAEQQKL 281
Cdd:COG4717 129 PlyQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELleqlslatEEELQDLAEELEELQQRL 208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 282 WNEELKYARGKEAIETQLAEYHKLARKLKLIPKGAENSK-----------------GYDFEIKFNPEAGANCLV------ 338
Cdd:COG4717 209 AELEEELEEAQEELEELEEELEQLENELEAAALEERLKEarlllliaaallallglGGSLLSLILTIAGVLFLVlgllal 288
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 339 --KYRAQVYVPLKELLNETEEEINKALNKKMGLEDTLEQLNAMITESKRSVKTLKEEVQKLDDLYQQKVKEAEEEdekga 416
Cdd:COG4717 289 lfLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEEL----- 363
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 417 nELESLEKHKHLLQSTVNEGLSEAMNELDAVQREYqlvvQTTTEERRKVGNNL-QHLVEMAATHVVSVEKHLEEQEAKVD 495
Cdd:COG4717 364 -QLEELEQEIAALLAEAGVEDEEELRAALEQAEEY----QELKEELEELEEQLeELLGELEELLEALDEEELEEELEELE 438
|
410 420
....*....|....*....|
gi 1149834415 496 REYEECKsEDLLENIREIAD 515
Cdd:COG4717 439 EELEELE-EELEELREELAE 457
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
202-513 |
1.01e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.53 E-value: 1.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 202 SNLESHSAILDQKLNGLNEEIARVELEYEAIKQENTRLQNIVDNQKYSVAD----IERINHERNELQQTINKLT---KDL 274
Cdd:TIGR02169 663 RGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDasrkIGEIEKEIEQLEQEEEKLKerlEEL 742
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 275 EAEQQKLWNEELKYARGKEAIETQLAEYHKLARKLKLipkgAENskgyDFEIKFNPEAGANCLVKYRAqvyvpLKELLNE 354
Cdd:TIGR02169 743 EEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEE----ALN----DLEARLSHSRIPEIQAELSK-----LEEEVSR 809
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 355 TE---EEINKALNKKMGLEDTLEQLNAMITESKRSVKTLKEEVQKLDDLYQQKVKEAEEEDEKGANELESLEKHKHLLQS 431
Cdd:TIGR02169 810 IEarlREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKK 889
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 432 TVneglSEAMNELDAVQREYQlVVQTTTEERRKVGNNLQHLVEMAATHVVSVEKHLEEQEAKVDreyEECKSEDLLENIR 511
Cdd:TIGR02169 890 ER----DELEAQLRELERKIE-ELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPE---EELSLEDVQAELQ 961
|
..
gi 1149834415 512 EI 513
Cdd:TIGR02169 962 RV 963
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
135-308 |
1.07e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.84 E-value: 1.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 135 AELQSKLKDLfnvdASKLESLEARNKALNEQITRLEQEREKEPNRLESLRKLKASLQGDVQKYQAY-------------- 200
Cdd:COG4942 58 AALERRIAAL----ARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLRALYRLGRQpplalllspedfld 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 201 ----MSNLESHSAILDQKLNGLNEEIARVELEYEAIKQENTRLQNIVDNQKysvADIERINHERNELQQTINKLTKDLEA 276
Cdd:COG4942 134 avrrLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELE---EERAALEALKAERQKLLARLEKELAE 210
|
170 180 190
....*....|....*....|....*....|..
gi 1149834415 277 EQQKLWNEELKYARGKEAIETQLAEYHKLARK 308
Cdd:COG4942 211 LAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
194-410 |
4.13e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.16 E-value: 4.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 194 VQKYQAYMSNLESHSA-----ILDQKLNGLNEEIARVELEYEAIKQENtRLQNIVDNQKYSVADIERINHERNELQQTIN 268
Cdd:COG3206 158 AEAYLEQNLELRREEArkaleFLEEQLPELRKELEEAEAALEEFRQKN-GLVDLSEEAKLLLQQLSELESQLAEARAELA 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 269 KLTKDLEA--EQQKLWNEELKYARGKEAIETQLAEYHKLARKLklipkgAENSKGYDFEikfNPEagancLVKYRAQVYV 346
Cdd:COG3206 237 EAEARLAAlrAQLGSGPDALPELLQSPVIQQLRAQLAELEAEL------AELSARYTPN---HPD-----VIALRAQIAA 302
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1149834415 347 PLKELLNETEEEINKALNKKMGLEDTLEQLNAMITESKRSVKTLKEEVQKLDDLyQQKVKEAEE 410
Cdd:COG3206 303 LRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRL-EREVEVARE 365
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
131-395 |
4.30e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.60 E-value: 4.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 131 EDMNAELQSKLKDLfnvdASKLESLEARNKALNEQITRLEQEREKEPNRLESLRKLKASLQGDVQKYQAYMSNLESHSAI 210
Cdd:TIGR02169 286 EEEQLRVKEKIGEL----EAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAE 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 211 LDQKLNGLNEEIARVELEYEAIKQENTRLQNivdnqkysvaDIERINHERNELQQTINKLTKDLEAEQQKLWNEELKYAR 290
Cdd:TIGR02169 362 LKEELEDLRAELEEVDKEFAETRDELKDYRE----------KLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAG 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 291 GKEAIETQLAEYHKLARKLKlipkgaenskgydfEIKFNPEAGANCLVKYRAQVYvPLKELLNETEEEINKALNKKMGLE 370
Cdd:TIGR02169 432 IEAKINELEEEKEDKALEIK--------------KQEWKLEQLAADLSKYEQELY-DLKEEYDRVEKELSKLQRELAEAE 496
|
250 260
....*....|....*....|....*
gi 1149834415 371 DTLEQLNAMITESKRSVKTLKEEVQ 395
Cdd:TIGR02169 497 AQARASEERVRGGRAVEEVLKASIQ 521
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
149-281 |
5.51e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.06 E-value: 5.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 149 ASKLESLEARNKALNEQITRLEQEREKEPNRLESLRKLKASLQgDVQKYQAYmsnleshsailDQKLNGLNEEIARVELE 228
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQ-RLAEYSWD-----------EIDVASAEREIAELEAE 676
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1149834415 229 YEAIKQENTRLQNIVDNQKYSVADIERINHERNELQQTINKLTKDLEAEQQKL 281
Cdd:COG4913 677 LERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEEL 729
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
133-502 |
5.70e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 45.88 E-value: 5.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 133 MNAELQSKLKDLFNVDASKLESLEArnkaLNEQITRLEQEREKEPNRLESLRKLKASLQGDVQKYQAYMSNLESHsailD 212
Cdd:pfam15921 438 MKSECQGQMERQMAAIQGKNESLEK----VSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEK----E 509
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 213 QKLNGLNEEIARVELEYEAIKQENTRLQNIVDNQKYSVADIERINHERNELQQTINKLTKDLEAEQQKLWneelKYARGK 292
Cdd:pfam15921 510 RAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVG----QHGRTA 585
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 293 EAIETQLAEYHKLA--RKLKL----IPKGAENSKGYDFEIKFNP-EAGANCLVKYRAQVYVPLKELLNETEEEINKALNK 365
Cdd:pfam15921 586 GAMQVEKAQLEKEIndRRLELqefkILKDKKDAKIRELEARVSDlELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTS 665
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 366 KMGLEDTLEQLNAMitesKRSVKTLKEEVQKLDDLYQQKVKEAEEEDEKGANELESLE---KHKHLLQSTVNEGLSEAMN 442
Cdd:pfam15921 666 RNELNSLSEDYEVL----KRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEgsdGHAMKVAMGMQKQITAKRG 741
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 443 ELDAVQREYQLVVQTTT----------EERRKVGNNLQHLV----EMAATHVV--SVEKHLEEQEA-------KVDREYE 499
Cdd:pfam15921 742 QIDALQSKIQFLEEAMTnankekhflkEEKNKLSQELSTVAteknKMAGELEVlrSQERRLKEKVAnmevaldKASLQFA 821
|
...
gi 1149834415 500 ECK 502
Cdd:pfam15921 822 ECQ 824
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
117-296 |
5.75e-05 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 45.78 E-value: 5.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 117 IKCYESFMNGADSFEDMN-AELQSKLKDLfnvdASKLESLEARNKALNEQITRLEQEREKEPNRLESLRKLKASLQGDVQ 195
Cdd:PHA02562 197 IKTYNKNIEEQRKKNGENiARKQNKYDEL----VEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIE 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 196 KYQAYMSNLESHSaILDQKLNGLNEEIARVELEYEAIKQENTRLQNIVDNQKysvaDIERINHERNELQQTINKLTKDLE 275
Cdd:PHA02562 273 QFQKVIKMYEKGG-VCPTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAID----ELEEIMDEFNEQSKKLLELKNKIS 347
|
170 180
....*....|....*....|.
gi 1149834415 276 AEQQKLWNEELKYARGKEAIE 296
Cdd:PHA02562 348 TNKQSLITLVDKAKKVKAAIE 368
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
168-464 |
6.53e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 45.88 E-value: 6.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 168 RLEQEREKEPNRLESLRKLKASLQGDvqkyQAYMSNLESHSAILDQKLNGLNEEIARVELEYEAIKQENTRLQNIVdNQK 247
Cdd:pfam17380 300 RLRQEKEEKAREVERRRKLEEAEKAR----QAEMDRQAAIYAEQERMAMERERELERIRQEERKRELERIRQEEIA-MEI 374
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 248 YSVADIERINHERnelQQTINKLTKDLE-AEQQKLWNEELKYARGKEAIET-QLAEYHKLARKLKLipKGAENSKGYDFE 325
Cdd:pfam17380 375 SRMRELERLQMER---QQKNERVRQELEaARKVKILEEERQRKIQQQKVEMeQIRAEQEEARQREV--RRLEEERAREME 449
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 326 -IKFNPEAGANCLVKYRAQVYVPLKELLNETEEEINKAL---NKKMGLEDTLEQLNAMITESKRSVKTLKEEVQ-KLDDL 400
Cdd:pfam17380 450 rVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRaeeQRRKILEKELEERKQAMIEEERKRKLLEKEMEeRQKAI 529
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1149834415 401 YQQKVKEAEEEDEKGANELESLEKHKHLLQSTvneglSEAMNELDAVQREYQLVVQTTTEERRK 464
Cdd:pfam17380 530 YEEERRREAEEERRKQQEMEERRRIQEQMRKA-----TEERSRLEAMEREREMMRQIVESEKAR 588
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
151-314 |
7.44e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.68 E-value: 7.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 151 KLESLEARNKALNEQITRLEQEREKEPNRLESLRKLKASLQGDvqkyqaymsnleshsaildqKLNGLNEEIARVELEYE 230
Cdd:COG4913 296 ELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGD--------------------RLEQLEREIERLERELE 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 231 AIKQENTRLQNIVDNQKYSV-ADIERINHERNELQQTINKLTKDLEAEQQKLWNEELKYARGKEAIETQLAEYHKLARKL 309
Cdd:COG4913 356 ERERRRARLEALLAALGLPLpASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRK 435
|
....*
gi 1149834415 310 KLIPK 314
Cdd:COG4913 436 SNIPA 440
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
232-459 |
1.15e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.44 E-value: 1.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 232 IKQENTRLQNIVDNQKYSVADIERINHERNELQQTINKLTKDLEAEQQKLWNEELKYARGKEAIETQLAEYHKLARKLKl 311
Cdd:COG3883 18 IQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALY- 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 312 ipkgaENSKGYDF-EIKFNPEAGANCL--VKYRAQVYVPLKELLNETEEEINKALNKKMGLEDTLEQLNAMITESKRSVK 388
Cdd:COG3883 97 -----RSGGSVSYlDVLLGSESFSDFLdrLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKA 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1149834415 389 TLKEEVQKLDDLYQQ-KVKEAEEEDEKGANELESLEKHKHLLQSTVNEGLSEAMNELDAVQREYQLVVQTTT 459
Cdd:COG3883 172 ELEAQQAEQEALLAQlSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 243
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
166-508 |
1.48e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.54 E-value: 1.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 166 ITRLEQEREkepnrlESLRKLKASLQgdvqkyqaymsNLESHSAILDQK---LNGLNEEiARVELEYEAIKQENTRLQni 242
Cdd:COG1196 167 ISKYKERKE------EAERKLEATEE-----------NLERLEDILGELerqLEPLERQ-AEKAERYRELKEELKELE-- 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 243 vdnQKYSVADIERINHERNELQQTINKLTKDLEAEQQKLWNEELKYARGKEAIETQLAEYHKLarklklipkgaenskgy 322
Cdd:COG1196 227 ---AELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEA----------------- 286
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 323 dfeikfnpeaganclvkyRAQVYVpLKELLNETEEEINKALNKKMGLEDTLEQLNAMITESKRSVKTLKEEVQklddlyq 402
Cdd:COG1196 287 ------------------QAEEYE-LLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELE------- 340
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 403 qkvkEAEEEDEKGANELESLEKHKHLLQSTVNEGLSEAMNELDAVQREYQLVVQTTTEERRKVgNNLQHLVEMAATHVVS 482
Cdd:COG1196 341 ----ELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELA-AQLEELEEAEEALLER 415
|
330 340
....*....|....*....|....*.
gi 1149834415 483 VEKHLEEQEAKVDREYEECKSEDLLE 508
Cdd:COG1196 416 LERLEEELEELEEALAELEEEEEEEE 441
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
124-476 |
1.72e-04 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 44.51 E-value: 1.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 124 MNGADSFEDMNAELQSKLKDLFNVDASKLESLEARNKALNEQITRLEQEREKEPNRLESLRKLKASLQGDVQKYQAYMSN 203
Cdd:PLN02939 102 MQRDEAIAAIDNEQQTNSKDGEQLSDFQLEDLVGMIQNAEKNILLLNQARLQALEDLEKILTEKEALQGKINILEMRLSE 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 204 L----------ESHSAILDQKLNGLNEEIAR-----------VELEYEAIKQENTRLQNivdnqkysvaDIERINHERNE 262
Cdd:PLN02939 182 TdariklaaqeKIHVEILEEQLEKLRNELLIrgateglcvhsLSKELDVLKEENMLLKD----------DIQFLKAELIE 251
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 263 LQQTINKLTKdLEAEQQKLwneelkyargkeaiETQLAEYhklarKLKLIPKGAENSKGYDFEIKFNPEAGANclvkyra 342
Cdd:PLN02939 252 VAETEERVFK-LEKERSLL--------------DASLREL-----ESKFIVAQEDVSKLSPLQYDCWWEKVEN------- 304
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 343 qvyvpLKELLNETEEEINKA---LNKKMGLEDTLEQLNAMITESKRSvktlKEEVQKLdDLYQQKVKEAEEEDEKGANEL 419
Cdd:PLN02939 305 -----LQDLLDRATNQVEKAalvLDQNQDLRDKVDKLEASLKEANVS----KFSSYKV-ELLQQKLKLLEERLQASDHEI 374
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 420 --------ESLEKHKHLLQSTVNEGLSEAMNE-LDAVQREY----QLVVQTTTEERRKVGNNLQHLVEMA 476
Cdd:PLN02939 375 hsyiqlyqESIKEFQDTLSKLKEESKKRSLEHpADDMPSEFwsriLLLIDGWLLEKKISNNDAKLLREMV 444
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
135-326 |
2.56e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.85 E-value: 2.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 135 AELQSKLKDLFNvdASKLESLEARNKALNEQITRLEQEREKEPNRLESLRKLKASLQGDVQKYQAYMSNLESHSAI--LD 212
Cdd:COG3206 192 EEAEAALEEFRQ--KNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSPVIqqLR 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 213 QKLNGLNEEIARVELEY-----------EAIKQENTRLQNIVDNQKYSV-ADIERINHERNELQQTINKLTKDLEAEQQK 280
Cdd:COG3206 270 AQLAELEAELAELSARYtpnhpdvialrAQIAALRAQLQQEAQRILASLeAELEALQAREASLQAQLAQLEARLAELPEL 349
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1149834415 281 lwneELKYARGKEAIETQLAEYHKLARKLKLIpKGAENSKGYDFEI 326
Cdd:COG3206 350 ----EAELRRLEREVEVARELYESLLQRLEEA-RLAEALTVGNVRV 390
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
164-411 |
4.90e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 4.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 164 EQITRLEQEREKEPNRLESLRKLKAslqgDVQKYQAYMSNLESHSAILD--------QKLNGLNEEIARVELEYEAIKQE 235
Cdd:COG4913 235 DDLERAHEALEDAREQIELLEPIRE----LAERYAAARERLAELEYLRAalrlwfaqRRLELLEAELEELRAELARLEAE 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 236 NTRLQNIVDNQKysvADIERINHERNELQ-QTINKLTKDLEAEQQKLwneelkyargkEAIETQLAEYHKLARKLKL-IP 313
Cdd:COG4913 311 LERLEARLDALR---EELDELEAQIRGNGgDRLEQLEREIERLEREL-----------EERERRRARLEALLAALGLpLP 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 314 KGAEnskgyDFEikfnpeAGANCLVKYRAQvyvpLKELLNETEEEINKALNKKMGLEDTLEQLNAMITESKRSVKTLKEE 393
Cdd:COG4913 377 ASAE-----EFA------ALRAEAAALLEA----LEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPAR 441
|
250
....*....|....*...
gi 1149834415 394 VQKLDDLYQQKVKEAEEE 411
Cdd:COG4913 442 LLALRDALAEALGLDEAE 459
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
135-317 |
5.13e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.51 E-value: 5.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 135 AELQSKLKDLfnvdASKLESLEARNKALNEQITRLEQEREKEPNRLESLRKLKASLQGDVQKYQA---------YMS--N 203
Cdd:COG3883 26 SELQAELEAA----QAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREelgeraralYRSggS 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 204 LESHSAILDQKlnGLNEEIARVeleyEAIKQENTRLQNIVDNQKYSVADIERINHERNELQQTINKLTKDLEAEQQKLWN 283
Cdd:COG3883 102 VSYLDVLLGSE--SFSDFLDRL----SALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEA 175
|
170 180 190
....*....|....*....|....*....|....
gi 1149834415 284 EELKYARGKEAIETQLAEYHKLARKLKLIPKGAE 317
Cdd:COG3883 176 QQAEQEALLAQLSAEEAAAEAQLAELEAELAAAE 209
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
139-301 |
6.84e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 42.22 E-value: 6.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 139 SKLKDLFNVDASKLESLEARNKALNEQITRLEQER---EKEPNRLESLR-------------------------KLKASL 190
Cdd:PRK05771 82 KSLEELIKDVEEELEKIEKEIKELEEEISELENEIkelEQEIERLEPWGnfdldlslllgfkyvsvfvgtvpedKLEELK 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 191 QGDVQKYQAYMSNLESHSAILDQKLNGLNEEIARVELEYEAIKQEntrlqniVDNQKYSVADIERINHERNELQQTINKL 270
Cdd:PRK05771 162 LESDVENVEYISTDKGYVYVVVVVLKELSDEVEEELKKLGFERLE-------LEEEGTPSELIREIKEELEEIEKERESL 234
|
170 180 190
....*....|....*....|....*....|.
gi 1149834415 271 TKDLEAEQQKlWNEELKYARGKEAIETQLAE 301
Cdd:PRK05771 235 LEELKELAKK-YLEELLALYEYLEIELERAE 264
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
190-513 |
7.26e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.36 E-value: 7.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 190 LQGDVQKYQAyMSNLESHSAIldQKLNGLNE---EIARVELEYEAIKQENTRLQNIVDNQKYSVadiERINHERNELQQT 266
Cdd:TIGR02169 140 LQGDVTDFIS-MSPVERRKII--DEIAGVAEfdrKKEKALEELEEVEENIERLDLIIDEKRQQL---ERLRREREKAERY 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 267 INKLTKDLEAEQQKLWNEELKYARGKEAIETQLA------------------EYHKLARKLKLIPKGAEnSKGYDFEIKF 328
Cdd:TIGR02169 214 QALLKEKREYEGYELLKEKEALERQKEAIERQLAsleeeleklteeiselekRLEEIEQLLEELNKKIK-DLGEEEQLRV 292
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 329 NPEAGANCLVKYRAQVYVPLKEL-LNETEEEINKALNKKMGLEDTLEQLNAMITESKRSVKTLKEEVQKLDDLYQQKVKE 407
Cdd:TIGR02169 293 KEKIGELEAEIASLERSIAEKEReLEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAE 372
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 408 AEEEDEKGAnelESLEKHKHLLQSTvnEGLSEAMNELDAVQREYQLVVQTTTEERRKVGNNLQHLvemaathvvsVEKHL 487
Cdd:TIGR02169 373 LEEVDKEFA---ETRDELKDYREKL--EKLKREINELKRELDRLQEELQRLSEELADLNAAIAGI----------EAKIN 437
|
330 340
....*....|....*....|....*.
gi 1149834415 488 EEQEAKVDREYEECKSEDLLENIREI 513
Cdd:TIGR02169 438 ELEEEKEDKALEIKKQEWKLEQLAAD 463
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
150-423 |
1.13e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 41.43 E-value: 1.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 150 SKLESLEARNKALNEQITRLEQEREKEPNRLESLRKLKASLQGDVQKYQAYMSNLESHSAILDQKLNGLNEEIARVELEY 229
Cdd:COG4372 45 EELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKER 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 230 EAIKQENTRLQNIVDNQKYSVADIERinhERNELQQTINKLTKDLEAEQQKLwnEELKYARGKEAIETQLAEyhkLARKL 309
Cdd:COG4372 125 QDLEQQRKQLEAQIAELQSEIAEREE---ELKELEEQLESLQEELAALEQEL--QALSEAEAEQALDELLKE---ANRNA 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 310 KLIPKGAENSKGYDFEIKFNPEAGANCLVKYRAQVYVPLKELLNETEEEINKALNKKMGLEDTLEQLNAMITESKRSVKT 389
Cdd:COG4372 197 EKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAILVEKDTEEE 276
|
250 260 270
....*....|....*....|....*....|....
gi 1149834415 390 LKEEVQKLDDLYQQKVKEAEEEDEKGANELESLE 423
Cdd:COG4372 277 ELEIAALELEALEEAALELKLLALLLNLAALSLI 310
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
136-520 |
1.78e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.20 E-value: 1.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 136 ELQSKLKDLFNVDASKLESLEARNKALNEQITRLEQ---EREKEPNRLESLRKLKASLQGDVQKYQ---AYMSNLESHSA 209
Cdd:PRK03918 300 EFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEkeeRLEELKKKLKELEKRLEELEERHELYEeakAKKEELERLKK 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 210 I--------LDQKLNGLNEEIARVELEYEAIKQENTRLQNIVDNQKYSVADIERI------------NHERNELQQTINK 269
Cdd:PRK03918 380 RltgltpekLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAkgkcpvcgreltEEHRKELLEEYTA 459
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 270 LTKDLEAEQQKLWNEELKYARGKEAIETQLAEYHKLARKLKL---IPKGAENSKGYDFEikfnpeagancLVKYRAQVYV 346
Cdd:PRK03918 460 ELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELaeqLKELEEKLKKYNLE-----------ELEKKAEEYE 528
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 347 PLKELLNETEEEI---NKALNKKMGLEDTLEQLNAMITESKR---------------SVKTLKEEVQKLDDLYQQKV--- 405
Cdd:PRK03918 529 KLKEKLIKLKGEIkslKKELEKLEELKKKLAELEKKLDELEEelaellkeleelgfeSVEELEERLKELEPFYNEYLelk 608
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 406 ---KEAEEEDEKGANELESLEKHKHLLQSTVNEgLSEAMNELDAVQREYQlvvQTTTEERRKVGNNLQHLVEMAATHVVS 482
Cdd:PRK03918 609 daeKELEREEKELKKLEEELDKAFEELAETEKR-LEELRKELEELEKKYS---EEEYEELREEYLELSRELAGLRAELEE 684
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 1149834415 483 VEKHLEEQEA---KVDREYEECKS--------EDLLENIREIADKYKKK 520
Cdd:PRK03918 685 LEKRREEIKKtleKLKEELEEREKakkeleklEKALERVEELREKVKKY 733
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
162-444 |
2.35e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 40.66 E-value: 2.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 162 LNEQITRLEQEREKEPNRLESLRKLKASLQG-DVQKYQAYMSNLESHSAILDQKLNGLNEeIARVELEYEAIKQENTRLQ 240
Cdd:PRK01156 481 LEEKIREIEIEVKDIDEKIVDLKKRKEYLESeEINKSINEYNKIESARADLEDIKIKINE-LKDKHDKYEEIKNRYKSLK 559
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 241 NIVDNQKY----------SVADIERINHERNElqqtINKLTKDLEAEQQKLwneELKYARGKEAIETQLAEYHKLARKLk 310
Cdd:PRK01156 560 LEDLDSKRtswlnalaviSLIDIETNRSRSNE----IKKQLNDLESRLQEI---EIGFPDDKSYIDKSIREIENEANNL- 631
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 311 lipkgaENSKGYDFEIKFNPEAGANCLVKYRAQV-----YVPLKELLNETEEEINKALNKkmgLEDTLEQLNAMITESKR 385
Cdd:PRK01156 632 ------NNKYNEIQENKILIEKLRGKIDNYKKQIaeidsIIPDLKEITSRINDIEDNLKK---SRKALDDAKANRARLES 702
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1149834415 386 SVKTLKEEVQKLDDLYQQKVK--EAEEEDEKGANELESLEK--HKHLLQSTVNEGLSEAMNEL 444
Cdd:PRK01156 703 TIEILRTRINELSDRINDINEtlESMKKIKKAIGDLKRLREafDKSGVPAMIRKSASQAMTSL 765
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
129-515 |
2.68e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 40.41 E-value: 2.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 129 SFEDMNAELQSKL-KDLFnvdaSKLESLEARNKALNEQITRLEQEREKEPNRLESLRKLkaslqgdVQKYQAYMSNLESh 207
Cdd:PRK02224 188 SLDQLKAQIEEKEeKDLH----ERLNGLESELAELDEEIERYEEQREQARETRDEADEV-------LEEHEERREELET- 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 208 saiLDQKLNGLNEEIARVELEYEAIKQE-----------NTRLQNIVDNQKYSVADIERINHERNELQQTINKLTKDLEA 276
Cdd:PRK02224 256 ---LEAEIEDLRETIAETEREREELAEEvrdlrerleelEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEE 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 277 E--QQKLWNEELKYARGK-EAIETQLAEYHKLARKLKlipKGAENSKGydfeikfNPEAGANCLVKYRAQVyVPLKELLN 353
Cdd:PRK02224 333 CrvAAQAHNEEAESLREDaDDLEERAEELREEAAELE---SELEEARE-------AVEDRREEIEELEEEI-EELRERFG 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 354 ETEEEINKALNKKMGLEDTLEQLNAMITESKRSVKTLKEEVQKLDDLYQ--------QKVK---------EAEEEDEKGA 416
Cdd:PRK02224 402 DAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEagkcpecgQPVEgsphvetieEDRERVEELE 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 417 NELESLEKHKHLLQSTVN--EGLSEAMNELDAVQREYQLVVQ------TTTEERRKVGNNL-----QHLVEMAATHVVSV 483
Cdd:PRK02224 482 AELEDLEEEVEEVEERLEraEDLVEAEDRIERLEERREDLEEliaerrETIEEKRERAEELreraaELEAEAEEKREAAA 561
|
410 420 430
....*....|....*....|....*....|....*...
gi 1149834415 484 EKHLEEQE-----AKVDREYEECKSE-DLLENIREIAD 515
Cdd:PRK02224 562 EAEEEAEEareevAELNSKLAELKERiESLERIRTLLA 599
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
199-427 |
2.71e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 40.38 E-value: 2.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 199 AYMSNLESHSAILDQKLNGLNEEIA---RVELEYEAI-KQENTRLQNIVDNQKYSVADIERINHERNELQQTINKLTKDL 274
Cdd:PHA02562 174 DKIRELNQQIQTLDMKIDHIQQQIKtynKNIEEQRKKnGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDP 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 275 EAEQQKLWNeelKYARGKEAIEtQLAEYHKLARKLKLIPKGAENSKGYDFEIKFNPEAGANCLVKYRAqvyvpLKELLNE 354
Cdd:PHA02562 254 SAALNKLNT---AAAKIKSKIE-QFQKVIKMYEKGGVCPTCTQQISEGPDRITKIKDKLKELQHSLEK-----LDTAIDE 324
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1149834415 355 TEE---EINKALNKKMGLEDTLEQLNAMITESKRSVKTLKEEVQKLDD---LYQQKVKEAEEEDEKGANELESLEKHKH 427
Cdd:PHA02562 325 LEEimdEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAefvDNAEELAKLQDELDKIVKTKSELVKEKY 403
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
131-457 |
3.06e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.44 E-value: 3.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 131 EDMNAELQSKLKDLFNVDASkLESLEARNKALNEQITRLEQEREKEPNRLESLRKLKA-SLQGDVQKYQAYMSNLESHSA 209
Cdd:TIGR02169 233 EALERQKEAIERQLASLEEE-LEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQlRVKEKIGELEAEIASLERSIA 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 210 ILDQKLNGLNEEIARVELEYEAIKQENTRLQNIVDNQKysvADIERINHERNELQQTINKLTKDLEAEQQKL--WNEELK 287
Cdd:TIGR02169 312 EKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEER---KRRDKLTEEYAELKEELEDLRAELEEVDKEFaeTRDELK 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 288 YARgkEAIETQLAEYHKLARKLKLIPKGAENSKGYDFEIKFNPEAganclvkyraqvyvpLKELLNETEEEINKALNKKM 367
Cdd:TIGR02169 389 DYR--EKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAG---------------IEAKINELEEEKEDKALEIK 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 368 GLEDTLEQLNAMITESKRSVKTLKEEVQKLDDLYQQKVKE-AEEEDEKGANELESLE-KHKHLLQSTVNEGLSEAMNELD 445
Cdd:TIGR02169 452 KQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRElAEAEAQARASEERVRGgRAVEEVLKASIQGVHGTVAQLG 531
|
330
....*....|..
gi 1149834415 446 AVQREYQLVVQT 457
Cdd:TIGR02169 532 SVGERYATAIEV 543
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
135-514 |
3.95e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 40.32 E-value: 3.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 135 AELQSKLKDLfnvdASKLESLEARNKALneqitrlEQEREKEPNRL----ESLRklkasLQGDVQKYQAYMSNLESHSAI 210
Cdd:COG3096 302 AEEQYRLVEM----ARELEELSARESDL-------EQDYQAASDHLnlvqTALR-----QQEKIERYQEDLEELTERLEE 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 211 LDQKLNGLNEEIARVELEYEAIKQEntrlqniVDNQKYSVADIER---INHERN-ELQQTINKLTK--------DLEAEQ 278
Cdd:COG3096 366 QEEVVEEAAEQLAEAEARLEAAEEE-------VDSLKSQLADYQQaldVQQTRAiQYQQAVQALEKaralcglpDLTPEN 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 279 QKLWNEELKyARGKEAIETQLAEYHKLArklklIPKGAEN--SKGYDFEIKFNPEAGanclvkyRAQVYVPLKELLNETE 356
Cdd:COG3096 439 AEDYLAAFR-AKEQQATEEVLELEQKLS-----VADAARRqfEKAYELVCKIAGEVE-------RSQAWQTARELLRRYR 505
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 357 EEINKAlnkkmgleDTLEQLNAMITESKRSVKTLKEEVQKLDDLYQQ--KVKEAEEEDEKGANELESLEKHKHLLQSTVN 434
Cdd:COG3096 506 SQQALA--------QRLQQLRAQLAELEQRLRQQQNAERLLEEFCQRigQQLDAAEELEELLAELEAQLEELEEQAAEAV 577
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 435 EGLSEAMNELDAVQREYQ---------LVVQTTTEE-RRKVGNNLQHLVEMAATHVVSVEKhleEQEAKVDREYEECKSE 504
Cdd:COG3096 578 EQRSELRQQLEQLRARIKelaarapawLAAQDALERlREQSGEALADSQEVTAAMQQLLER---EREATVERDELAARKQ 654
|
410
....*....|
gi 1149834415 505 DLLENIREIA 514
Cdd:COG3096 655 ALESQIERLS 664
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
348-515 |
4.82e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 39.65 E-value: 4.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 348 LKELLNETEEEINKALNKKMGLEDTLEQLNAMITESKRSVKTLKEEVQKLDDLYQQ----------KVKEAEEEDEKGAN 417
Cdd:TIGR02168 696 LEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQlskelteleaEIEELEERLEEAEE 775
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 418 ELESLEKHKHLLQSTVNEgLSEAMNELDAVQREYQLVVQTTTEERRKVGNNLQHLVEMAAthvvSVEKHLEEQEAKVDRe 497
Cdd:TIGR02168 776 ELAEAEAEIEELEAQIEQ-LKEELKALREALDELRAELTLLNEEAANLRERLESLERRIA----ATERRLEDLEEQIEE- 849
|
170
....*....|....*...
gi 1149834415 498 yeecKSEDLLENIREIAD 515
Cdd:TIGR02168 850 ----LSEDIESLAAEIEE 863
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
138-292 |
4.82e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.36 E-value: 4.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 138 QSKLKDLFNVD-----ASKLESLEARNKALNEQITRLEQEREKepnrlesLRKLKASLQGDVQKYQAYMSNLESHSAILD 212
Cdd:COG4942 119 QPPLALLLSPEdfldaVRRLQYLKYLAPARREQAEELRADLAE-------LAALRAELEAERAELEALLAELEEERAALE 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 213 QKLNGLNEEIARVELEYEAIKQENTRLQNivdnqkysvadierinhERNELQQTINKLTKDLEAEQQKLWNEELKYARGK 292
Cdd:COG4942 192 ALKAERQKLLARLEKELAELAAELAELQQ-----------------EAEELEALIARLEAEAAAAAERTPAAGFAALKGK 254
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
134-298 |
5.88e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 39.68 E-value: 5.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 134 NAELQSKLKDLFNVDASkleSLEARNKALNEQITRLEQEREKepNRLESLRKLKASLQGDVQKYQAYMSNLESHSAILDQ 213
Cdd:COG5022 901 NLELESEIIELKKSLSS---DLIENLEFKTELIARLKKLLNN--IDLEEGPSIEYVKLPELNKLHEVESKLKETSEEYED 975
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 214 KLNGLNEEIARVELEYEAIKQENTRLQNIVDNQK---YSVADIERINHERNELQQTINKLTKDLEAEQQKLWNEELKYAR 290
Cdd:COG5022 976 LLKKSTILVREGNKANSELKNFKKELAELSKQYGalqESTKQLKELPVEVAELQSASKIISSESTELSILKPLQKLKGLL 1055
|
....*...
gi 1149834415 291 GKEAIETQ 298
Cdd:COG5022 1056 LLENNQLQ 1063
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
130-301 |
7.62e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 39.05 E-value: 7.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 130 FEDMNAELQSKLKDLFNVDASKLESLEARNKALNEQITRLEQEREkepnRLESlrKLKASLQGDVQKYQAYMSNLESHSA 209
Cdd:pfam12128 281 RQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELE----ALED--QHGAFLDADIETAAADQEQLPSWQS 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 210 ildqKLNGLNEEIARVELEYEAIKQENTRLQNIVDNQkySVADIERINHERNELQQTINKLTKDLEAEQQKL---WNEEL 286
Cdd:pfam12128 355 ----ELENLEERLKALTGKHQDVTAKYNRRRSKIKEQ--NNRDIAGIKDKLAKIREARDRQLAVAEDDLQALeseLREQL 428
|
170 180
....*....|....*....|
gi 1149834415 287 KYAR-----GKEAIETQLAE 301
Cdd:pfam12128 429 EAGKlefneEEYRLKSRLGE 448
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
126-465 |
7.74e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 39.18 E-value: 7.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 126 GADSFEDMNAELQSKLKDLFNVDASKLESLEARNKALNEQITRLEQEREKEPNRLESLRKLKASLQGDVQKYQAYMSNLE 205
Cdd:pfam02463 658 LAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEE 737
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 206 SHSAILDQKLNGLNEEIARVELEYEAIKQENTRLQNI----VDNQKYSVADIERINHERNELQQTINKLTKDLEAEQQKL 281
Cdd:pfam02463 738 LKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKelaeEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELL 817
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 282 WNEELKYARGKEAIETQLAEYHKLARKLKLIPKGAENSKGYDFEIKFNPEAGANCLVKYRAQVYVPLKELLNETEEEINK 361
Cdd:pfam02463 818 EEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKE 897
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149834415 362 ALNKKMGLEDTLEQLNAMITESKRSVKTLKEEVQKLDD------LYQQKVKEAEEEDEKGANELESLEKHKHLLQSTVNE 435
Cdd:pfam02463 898 EKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEepeellLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNL 977
|
330 340 350
....*....|....*....|....*....|
gi 1149834415 436 GLSEAMNELDAVQREYQLVVQTTTEERRKV 465
Cdd:pfam02463 978 MAIEEFEEKEERYNKDELEKERLEEEKKKL 1007
|
|
| |
