NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1069378924|ref|XP_018084329|]
View 

homeobox protein OTX2-B isoform X1 [Xenopus laevis]

Protein Classification

homeobox protein( domain architecture ID 11079031)

homeobox protein similar to Otx1 and Otx2 which are vertebrate homologs of the Drosophila gap gene orthodenticle and may play a role in the specification or differentiation of neurons in the deep layers of the cerebral cortex

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
TF_Otx pfam03529
Otx1 transcription factor;
172-253 6.41e-30

Otx1 transcription factor;


:

Pssm-ID: 427350  Cd Length: 91  Bit Score: 108.84  E-value: 6.41e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1069378924 172 SPASISPLSDPLSTSS-SCMQRS--------YPMTYTQASGYSQGY-ASSTSYFGGMDCGSYLTPMHHQLSGPGAtLSPM 241
Cdd:pfam03529   1 SPASISPLPDPLAPSSaSCMQRSvsstasasYPMSYGQASAYSQGYpAGSSSYFGGVDCGSYLSPMHSQLHHPHQ-LSPM 79

                          90
                  ....*....|..
gi 1069378924 242 STNAVTSHLNQS 253
Cdd:pfam03529  80 TASSMGGHLHQH 91
Homeodomain pfam00046
Homeodomain;
58-113 1.63e-26

Homeodomain;


:

Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 98.73  E-value: 1.63e-26
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1069378924  58 RRERTTFTRAQLDILEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCR 113
Cdd:pfam00046   1 RRKRTTFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWK 56
 
Name Accession Description Interval E-value
TF_Otx pfam03529
Otx1 transcription factor;
172-253 6.41e-30

Otx1 transcription factor;


Pssm-ID: 427350  Cd Length: 91  Bit Score: 108.84  E-value: 6.41e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1069378924 172 SPASISPLSDPLSTSS-SCMQRS--------YPMTYTQASGYSQGY-ASSTSYFGGMDCGSYLTPMHHQLSGPGAtLSPM 241
Cdd:pfam03529   1 SPASISPLPDPLAPSSaSCMQRSvsstasasYPMSYGQASAYSQGYpAGSSSYFGGVDCGSYLSPMHSQLHHPHQ-LSPM 79

                          90
                  ....*....|..
gi 1069378924 242 STNAVTSHLNQS 253
Cdd:pfam03529  80 TASSMGGHLHQH 91
Homeodomain pfam00046
Homeodomain;
58-113 1.63e-26

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 98.73  E-value: 1.63e-26
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1069378924  58 RRERTTFTRAQLDILEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCR 113
Cdd:pfam00046   1 RRKRTTFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWK 56
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 57-113 6.08e-24

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 91.93  E-value: 6.08e-24
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1069378924   57 QRRERTTFTRAQLDILEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCR 113
Cdd:smart00389   1 KRRKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 58-113 7.13e-24

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 91.92  E-value: 7.13e-24
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1069378924  58 RRERTTFTRAQLDILEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCR 113
Cdd:cd00086     1 RRKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLK 56
COG5576 COG5576
Homeodomain-containing transcription factor [Transcription];
55-113 4.95e-14

Homeodomain-containing transcription factor [Transcription];


Pssm-ID: 227863 [Multi-domain]  Cd Length: 156  Bit Score: 68.23  E-value: 4.95e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1069378924  55 RKQRRERTTFTRAQLDILEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCR 113
Cdd:COG5576    49 SPPKSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEK 107
 
Name Accession Description Interval E-value
TF_Otx pfam03529
Otx1 transcription factor;
172-253 6.41e-30

Otx1 transcription factor;


Pssm-ID: 427350  Cd Length: 91  Bit Score: 108.84  E-value: 6.41e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1069378924 172 SPASISPLSDPLSTSS-SCMQRS--------YPMTYTQASGYSQGY-ASSTSYFGGMDCGSYLTPMHHQLSGPGAtLSPM 241
Cdd:pfam03529   1 SPASISPLPDPLAPSSaSCMQRSvsstasasYPMSYGQASAYSQGYpAGSSSYFGGVDCGSYLSPMHSQLHHPHQ-LSPM 79

                          90
                  ....*....|..
gi 1069378924 242 STNAVTSHLNQS 253
Cdd:pfam03529  80 TASSMGGHLHQH 91
Homeodomain pfam00046
Homeodomain;
58-113 1.63e-26

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 98.73  E-value: 1.63e-26
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1069378924  58 RRERTTFTRAQLDILEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCR 113
Cdd:pfam00046   1 RRKRTTFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWK 56
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 57-113 6.08e-24

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 91.93  E-value: 6.08e-24
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1069378924   57 QRRERTTFTRAQLDILEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCR 113
Cdd:smart00389   1 KRRKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 58-113 7.13e-24

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 91.92  E-value: 7.13e-24
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1069378924  58 RRERTTFTRAQLDILEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCR 113
Cdd:cd00086     1 RRKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLK 56
COG5576 COG5576
Homeodomain-containing transcription factor [Transcription];
55-113 4.95e-14

Homeodomain-containing transcription factor [Transcription];


Pssm-ID: 227863 [Multi-domain]  Cd Length: 156  Bit Score: 68.23  E-value: 4.95e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1069378924  55 RKQRRERTTFTRAQLDILEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCR 113
Cdd:COG5576    49 SPPKSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEK 107
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH