NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1046861720|ref|XP_017455277|]
View 

transcription factor GATA-4 isoform X1 [Rattus norvegicus]

Protein Classification

GATA-type transcription factor( domain architecture ID 12062858)

GATA-type transcription factor binds to the DNA consensus sequence [AT]GATA[AG] and may function as a transcription factor/regulator

CATH:  3.30.50.10
Gene Ontology:  GO:0003700|GO:0006357|GO:0006355|GO:0008270|GO:0043565|GO:0000981
PubMed:  31574210
SCOP:  4003617

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
GATA-N pfam05349
GATA-type transcription activator, N-terminal; GATA transcription factors mediate cell ...
 1-204 4.54e-31

GATA-type transcription activator, N-terminal; GATA transcription factors mediate cell differentiation in a diverse range of tissues. Mutation are often associated with certain congenital human disorders. The six classical vertebrate GATA proteins, GATA-1 to GATA-6, are highly homologous and have two tandem zinc fingers. The classical GATA transcription factors function transcription activators. In lower metazoans GATA proteins carry a single canonical zinc finger. This family represents the N-terminal domain of the family of GATA transcription activators.


:

Pssm-ID: 461628 [Multi-domain]  Cd Length: 174  Bit Score: 117.53  E-value: 4.54e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046861720   1 MYQSLAMAANHGPPPgayEAGGPGAFMHSAgaASSPVYVPTPRVPSSVLGLSYLQGGGSGAASGATSggssgagpsgagp 80
Cdd:pfam05349   1 MYQSLALAANHGQAA---YDHDSGGFLHSA--ASSPVYVPTTRVPSMLPTLPYLQGCGSSQQSHPVS------------- 62

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046861720  81 gtqqGSPGWSQAGAEGAAYTP--PPVSPRFSFPGTTgslaaaaaaAAAREAAAYSSSGGAAGAGLAGREQYGRPG--FAG 156
Cdd:pfam05349  63 ----SHSGWAQAGAESSSYNPgsPHPSPRFSYSHSP---------PGSNGTSRDAAYQSPLLISAGGREQYGALGrpLGG 129

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1046861720 157 SYSSPYPAYMAdvgasWAAAAAASAGPFDSPVLHSLPGRANP--ARHPNL 204
Cdd:pfam05349 130 SYPSPYPAYVS-----PEMAPSWTAGPFDSSVLHSLQGRGAPlpGRRPNL 174
ZnF_GATA cd00202
Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] ...
 270-321 4.93e-21

Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C


:

Pssm-ID: 238123 [Multi-domain]  Cd Length: 54  Bit Score: 85.89  E-value: 4.93e-21
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1046861720 270 SCANCQTTTTTLWRRN-AEGEPVCNACGLYMKLHGVPRPLAMRKEG-IQTRKRK 321
Cdd:cd00202     1 ACSNCGTTTTPLWRRGpSGGSTLCNACGLYWKKHGVMRPLSKRKKDqIKRRNRK 54
ZnF_GATA cd00202
Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] ...
 216-266 1.78e-17

Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C


:

Pssm-ID: 238123 [Multi-domain]  Cd Length: 54  Bit Score: 75.87  E-value: 1.78e-17
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1046861720 216 ECVNCGAMSTPLWRRDG-TGHYLCNACGLYHKMNGINRPLIKPQRRLSASRR 266
Cdd:cd00202     1 ACSNCGTTTTPLWRRGPsGGSTLCNACGLYWKKHGVMRPLSKRKKDQIKRRN 52
 
Name Accession Description Interval E-value
GATA-N pfam05349
GATA-type transcription activator, N-terminal; GATA transcription factors mediate cell ...
 1-204 4.54e-31

GATA-type transcription activator, N-terminal; GATA transcription factors mediate cell differentiation in a diverse range of tissues. Mutation are often associated with certain congenital human disorders. The six classical vertebrate GATA proteins, GATA-1 to GATA-6, are highly homologous and have two tandem zinc fingers. The classical GATA transcription factors function transcription activators. In lower metazoans GATA proteins carry a single canonical zinc finger. This family represents the N-terminal domain of the family of GATA transcription activators.


Pssm-ID: 461628 [Multi-domain]  Cd Length: 174  Bit Score: 117.53  E-value: 4.54e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046861720   1 MYQSLAMAANHGPPPgayEAGGPGAFMHSAgaASSPVYVPTPRVPSSVLGLSYLQGGGSGAASGATSggssgagpsgagp 80
Cdd:pfam05349   1 MYQSLALAANHGQAA---YDHDSGGFLHSA--ASSPVYVPTTRVPSMLPTLPYLQGCGSSQQSHPVS------------- 62

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046861720  81 gtqqGSPGWSQAGAEGAAYTP--PPVSPRFSFPGTTgslaaaaaaAAAREAAAYSSSGGAAGAGLAGREQYGRPG--FAG 156
Cdd:pfam05349  63 ----SHSGWAQAGAESSSYNPgsPHPSPRFSYSHSP---------PGSNGTSRDAAYQSPLLISAGGREQYGALGrpLGG 129

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1046861720 157 SYSSPYPAYMAdvgasWAAAAAASAGPFDSPVLHSLPGRANP--ARHPNL 204
Cdd:pfam05349 130 SYPSPYPAYVS-----PEMAPSWTAGPFDSSVLHSLQGRGAPlpGRRPNL 174
ZnF_GATA cd00202
Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] ...
 270-321 4.93e-21

Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C


Pssm-ID: 238123 [Multi-domain]  Cd Length: 54  Bit Score: 85.89  E-value: 4.93e-21
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1046861720 270 SCANCQTTTTTLWRRN-AEGEPVCNACGLYMKLHGVPRPLAMRKEG-IQTRKRK 321
Cdd:cd00202     1 ACSNCGTTTTPLWRRGpSGGSTLCNACGLYWKKHGVMRPLSKRKKDqIKRRNRK 54
ZnF_GATA cd00202
Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] ...
 216-266 1.78e-17

Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C


Pssm-ID: 238123 [Multi-domain]  Cd Length: 54  Bit Score: 75.87  E-value: 1.78e-17
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1046861720 216 ECVNCGAMSTPLWRRDG-TGHYLCNACGLYHKMNGINRPLIKPQRRLSASRR 266
Cdd:cd00202     1 ACSNCGTTTTPLWRRGPsGGSTLCNACGLYWKKHGVMRPLSKRKKDQIKRRN 52
ZnF_GATA smart00401
zinc finger binding to DNA consensus sequence [AT]GATA[AG];
268-315 2.74e-17

zinc finger binding to DNA consensus sequence [AT]GATA[AG];


Pssm-ID: 214648 [Multi-domain]  Cd Length: 52  Bit Score: 75.53  E-value: 2.74e-17
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 1046861720  268 GLSCANCQTTTTTLWRRNAEGE-PVCNACGLYMKLHGVP-RPLAMRKEGI 315
Cdd:smart00401   3 GRSCSNCGTTETPLWRRGPSGNkTLCNACGLYYKKHGGLkRPLSLKKDGI 52
GATA pfam00320
GATA zinc finger; This domain uses four cysteine residues to coordinate a zinc ion. This ...
 271-305 4.16e-14

GATA zinc finger; This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.


Pssm-ID: 425605 [Multi-domain]  Cd Length: 36  Bit Score: 65.80  E-value: 4.16e-14
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1046861720 271 CANCQTTTTTLWRRNAEGEP-VCNACGLYMKLHGVP 305
Cdd:pfam00320   1 CSNCGTTKTPLWRRGPNGNRtLCNACGLYYKKKGLK 36
ZnF_GATA smart00401
zinc finger binding to DNA consensus sequence [AT]GATA[AG];
212-257 7.69e-14

zinc finger binding to DNA consensus sequence [AT]GATA[AG];


Pssm-ID: 214648 [Multi-domain]  Cd Length: 52  Bit Score: 65.52  E-value: 7.69e-14
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*...
gi 1046861720  212 SEGRECVNCGAMSTPLWRRDGTGH-YLCNACGLYHKMNGI-NRPLIKP 257
Cdd:smart00401   1 GSGRSCSNCGTTETPLWRRGPSGNkTLCNACGLYYKKHGGlKRPLSLK 48
GATA pfam00320
GATA zinc finger; This domain uses four cysteine residues to coordinate a zinc ion. This ...
 217-249 3.39e-12

GATA zinc finger; This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.


Pssm-ID: 425605 [Multi-domain]  Cd Length: 36  Bit Score: 60.41  E-value: 3.39e-12
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1046861720 217 CVNCGAMSTPLWRRDGTGHY-LCNACGLYHKMNG 249
Cdd:pfam00320   1 CSNCGTTKTPLWRRGPNGNRtLCNACGLYYKKKG 34
GAT1 COG5641
GATA Zn-finger-containing transcription factor [Transcription];
209-324 5.27e-07

GATA Zn-finger-containing transcription factor [Transcription];


Pssm-ID: 227928 [Multi-domain]  Cd Length: 498  Bit Score: 51.80  E-value: 5.27e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046861720 209 DDFSEGRECVNCGAMSTPLWRRD-----GTGHYLCNACGLYHKMNGINRPLIKPQRRLSASRRVGLSCANCQTTT-TTLW 282
Cdd:COG5641   153 DNSNQPHVCSNCKTTSTPLWRRAssessLPGNNLCNACGLYLKLHGSPRAPISLKSDSIKSRSSRSSHNNNDSNGeNANT 232

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1046861720 283 RRNAEGEPVCNACGLYMKLHGvpRPLAMRKEGIQTRKRKPKN 324
Cdd:COG5641   233 ESIGNSSASKLTKSWEERPQG--RQLLSDAGSLSPRSNNPKS 272
 
Name Accession Description Interval E-value
GATA-N pfam05349
GATA-type transcription activator, N-terminal; GATA transcription factors mediate cell ...
 1-204 4.54e-31

GATA-type transcription activator, N-terminal; GATA transcription factors mediate cell differentiation in a diverse range of tissues. Mutation are often associated with certain congenital human disorders. The six classical vertebrate GATA proteins, GATA-1 to GATA-6, are highly homologous and have two tandem zinc fingers. The classical GATA transcription factors function transcription activators. In lower metazoans GATA proteins carry a single canonical zinc finger. This family represents the N-terminal domain of the family of GATA transcription activators.


Pssm-ID: 461628 [Multi-domain]  Cd Length: 174  Bit Score: 117.53  E-value: 4.54e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046861720   1 MYQSLAMAANHGPPPgayEAGGPGAFMHSAgaASSPVYVPTPRVPSSVLGLSYLQGGGSGAASGATSggssgagpsgagp 80
Cdd:pfam05349   1 MYQSLALAANHGQAA---YDHDSGGFLHSA--ASSPVYVPTTRVPSMLPTLPYLQGCGSSQQSHPVS------------- 62

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046861720  81 gtqqGSPGWSQAGAEGAAYTP--PPVSPRFSFPGTTgslaaaaaaAAAREAAAYSSSGGAAGAGLAGREQYGRPG--FAG 156
Cdd:pfam05349  63 ----SHSGWAQAGAESSSYNPgsPHPSPRFSYSHSP---------PGSNGTSRDAAYQSPLLISAGGREQYGALGrpLGG 129

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1046861720 157 SYSSPYPAYMAdvgasWAAAAAASAGPFDSPVLHSLPGRANP--ARHPNL 204
Cdd:pfam05349 130 SYPSPYPAYVS-----PEMAPSWTAGPFDSSVLHSLQGRGAPlpGRRPNL 174
ZnF_GATA cd00202
Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] ...
 270-321 4.93e-21

Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C


Pssm-ID: 238123 [Multi-domain]  Cd Length: 54  Bit Score: 85.89  E-value: 4.93e-21
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1046861720 270 SCANCQTTTTTLWRRN-AEGEPVCNACGLYMKLHGVPRPLAMRKEG-IQTRKRK 321
Cdd:cd00202     1 ACSNCGTTTTPLWRRGpSGGSTLCNACGLYWKKHGVMRPLSKRKKDqIKRRNRK 54
ZnF_GATA cd00202
Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] ...
 216-266 1.78e-17

Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C


Pssm-ID: 238123 [Multi-domain]  Cd Length: 54  Bit Score: 75.87  E-value: 1.78e-17
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1046861720 216 ECVNCGAMSTPLWRRDG-TGHYLCNACGLYHKMNGINRPLIKPQRRLSASRR 266
Cdd:cd00202     1 ACSNCGTTTTPLWRRGPsGGSTLCNACGLYWKKHGVMRPLSKRKKDQIKRRN 52
ZnF_GATA smart00401
zinc finger binding to DNA consensus sequence [AT]GATA[AG];
268-315 2.74e-17

zinc finger binding to DNA consensus sequence [AT]GATA[AG];


Pssm-ID: 214648 [Multi-domain]  Cd Length: 52  Bit Score: 75.53  E-value: 2.74e-17
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 1046861720  268 GLSCANCQTTTTTLWRRNAEGE-PVCNACGLYMKLHGVP-RPLAMRKEGI 315
Cdd:smart00401   3 GRSCSNCGTTETPLWRRGPSGNkTLCNACGLYYKKHGGLkRPLSLKKDGI 52
GATA pfam00320
GATA zinc finger; This domain uses four cysteine residues to coordinate a zinc ion. This ...
 271-305 4.16e-14

GATA zinc finger; This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.


Pssm-ID: 425605 [Multi-domain]  Cd Length: 36  Bit Score: 65.80  E-value: 4.16e-14
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1046861720 271 CANCQTTTTTLWRRNAEGEP-VCNACGLYMKLHGVP 305
Cdd:pfam00320   1 CSNCGTTKTPLWRRGPNGNRtLCNACGLYYKKKGLK 36
ZnF_GATA smart00401
zinc finger binding to DNA consensus sequence [AT]GATA[AG];
212-257 7.69e-14

zinc finger binding to DNA consensus sequence [AT]GATA[AG];


Pssm-ID: 214648 [Multi-domain]  Cd Length: 52  Bit Score: 65.52  E-value: 7.69e-14
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*...
gi 1046861720  212 SEGRECVNCGAMSTPLWRRDGTGH-YLCNACGLYHKMNGI-NRPLIKP 257
Cdd:smart00401   1 GSGRSCSNCGTTETPLWRRGPSGNkTLCNACGLYYKKHGGlKRPLSLK 48
GATA pfam00320
GATA zinc finger; This domain uses four cysteine residues to coordinate a zinc ion. This ...
 217-249 3.39e-12

GATA zinc finger; This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.


Pssm-ID: 425605 [Multi-domain]  Cd Length: 36  Bit Score: 60.41  E-value: 3.39e-12
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1046861720 217 CVNCGAMSTPLWRRDGTGHY-LCNACGLYHKMNG 249
Cdd:pfam00320   1 CSNCGTTKTPLWRRGPNGNRtLCNACGLYYKKKG 34
GAT1 COG5641
GATA Zn-finger-containing transcription factor [Transcription];
209-324 5.27e-07

GATA Zn-finger-containing transcription factor [Transcription];


Pssm-ID: 227928 [Multi-domain]  Cd Length: 498  Bit Score: 51.80  E-value: 5.27e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046861720 209 DDFSEGRECVNCGAMSTPLWRRD-----GTGHYLCNACGLYHKMNGINRPLIKPQRRLSASRRVGLSCANCQTTT-TTLW 282
Cdd:COG5641   153 DNSNQPHVCSNCKTTSTPLWRRAssessLPGNNLCNACGLYLKLHGSPRAPISLKSDSIKSRSSRSSHNNNDSNGeNANT 232

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1046861720 283 RRNAEGEPVCNACGLYMKLHGvpRPLAMRKEGIQTRKRKPKN 324
Cdd:COG5641   233 ESIGNSSASKLTKSWEERPQG--RQLLSDAGSLSPRSNNPKS 272
GAT1 COG5641
GATA Zn-finger-containing transcription factor [Transcription];
219-335 8.10e-07

GATA Zn-finger-containing transcription factor [Transcription];


Pssm-ID: 227928 [Multi-domain]  Cd Length: 498  Bit Score: 51.03  E-value: 8.10e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046861720 219 NCGAMSTPLWRR-DGTGHYLCNACGLYHKMNGINRPLikPQRRLSASRRVGLSCANCQTTTTTLWRrnaEGEPVCNACGL 297
Cdd:COG5641   303 LTTSTATPLWRRtSDKSSFSCNASGSALKPPGSKRPL--LPKPDPNSKRSNATCMNCSSTPTNKIL---SPPTTSNSPGA 377

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1046861720 298 YMKLHGVPRPLAMRKEGIQTRKRKPKN---LNKSKTPAGPP 335
Cdd:COG5641   378 QVKLPNQTRSTGATKKKITRRRMNSGKipaLSSSMKNPVPK 418
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH