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Conserved domains on  [gi|1039758060|ref|XP_017173761|]
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neuroblast differentiation-associated protein AHNAK isoform X2 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
TamB super family cl34519
Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, ...
3882-4385 3.39e-10

Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, and vesicular transport];


The actual alignment was detected with superfamily member COG2911:

Pssm-ID: 442155 [Multi-domain]  Cd Length: 766  Bit Score: 66.60  E-value: 3.39e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 3882 VEASGPKIEGNLKGPKVQANLDTPDINIEG-PEAKIKAPSFSVSA-----PQVSIPDVNVNLKG--------PKIKGDVP 3947
Cdd:COG2911     58 LDAPEGALSGLLDLVQATLDAEGLDLASSAlDDLDLRSGGNRLTLsgnlsAASLDGDLDLDAPDladlaallPGLAGSLS 137
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 3948 SVGLEGPNIDLQGPEGKIKFpkfslpKISAPGVKMEGGSTEIGAQMPSLEGGLSTSDmKLEGPHLSLKGPGvdlpSVDLS 4027
Cdd:COG2911    138 GDGLDSLSLDADGTLAQHRL------DLDAKGEPASLSLALSGGLDRDDGGTLSRLD-FLNTGRWGLAAPA----TLSYD 206
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 4028 MPKVSGPDLDMNLKGP-SLKGDLGASsPSMKLHAPGLDLKGVGgkvHIGADGVKMSG-IDATTALSVGAPDVTLKG-PSL 4104
Cdd:COG2911    207 DGRVTLGPLCLAGGGSlCLSGTLGGT-LDLQLRLKNLPLALLN---PFLPDDLGLSGtLNGDADLSGGLANPQGDAsLSL 282
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 4105 QGDLAVSGDIKCPKVSVATPDVSLEASEGAVKLphmklpQFGISTPGSD-LDINIKGPQVCGELKGSGMDVNLKGPQISA 4183
Cdd:COG2911    283 SGDLTLNDGLGGLPLGLGDLTLNARLANGRLTL------DLTLDGGGLGtLSLSGSVPLADGLPPSAPLDGNLRLDNLDL 356
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 4184 -------PSMDFNLEGpKVKGSLGAAGELKGPAIGG--ALPGISIQGPEGNLQMPGIKAsgcDVKLSSGQISGPEIKGDL 4254
Cdd:COG2911    357 allnpllPGVLERLSG-QLNGDLRLSGTLAAPQLNGqlTLDDGRLKLPALGVRLTDINL---RLRFDGDRLTLDGLTADS 432
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 4255 KGSGLGLHGAVP--------DIGVKGPSFNV---------ASPESDFGVSLKGPKVKGGVDVSGG-VSVPDINLGEGHMS 4316
Cdd:COG2911    433 GGGTLTLSGTVDldglswpaDLTLKGDNLRVlnppdytatVSGDLTLTGTPDGPTLSGNVTVPRArITLPELPPSAVSLS 512
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 4317 ----VKGSGVEWKGPQVSSSLNLDTS---KLAGNLHFSGP----KIEGDVKGGQTGLQGPGLSvsgpqGHLESESGKVTF 4385
Cdd:COG2911    513 ddvvVVNRPPEPVPEEEAAGLPLDLDlnvNLGDDVRVRGFgldaRLGGDLRLTGTPGGAPRLT-----GEINLVRGRYNA 587
PDZ_canonical super family cl49608
canonical PDZ domain; Canonical PDZ (PSD-95 (Postsynaptic density protein 95), Dlg (Discs ...
23-57 3.73e-04

canonical PDZ domain; Canonical PDZ (PSD-95 (Postsynaptic density protein 95), Dlg (Discs large protein), and ZO-1 (Zonula occludens-1)) domain. PDZ domains usually bind to short specific peptide sequences located at the C-terminal end of their partner proteins known as PDZ binding motifs. These domains can also interact with internal peptide motifs and certain lipids, and can take part in a head-to-tail oligomerization with other PDZ domains. The PDZ superfamily includes canonical PDZ domains as well as those with circular permutations and domain swapping mediated by beta-strands. The canonical PDZ domain contains six beta-strands A-F and two alpha-helices (alpha-helix 1 and 2), arranged in the order: beta-strands A, B, C, alpha-helix 1, beta-strands D, E, alpha-helix 2 and beta-strand F.


The actual alignment was detected with superfamily member cd06716:

Pssm-ID: 483948 [Multi-domain]  Cd Length: 88  Bit Score: 42.26  E-value: 3.73e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 1039758060   23 GLTIAQRDD-----GVFVQEVMQNSPAARTGVVKEGDQIV 57
Cdd:cd06716     18 GLTLCYRTDdeedtGIYVSEVDPNSIAAKDGRIREGDQIL 57
TamB super family cl34519
Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, ...
2896-3311 7.05e-04

Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, and vesicular transport];


The actual alignment was detected with superfamily member COG2911:

Pssm-ID: 442155 [Multi-domain]  Cd Length: 766  Bit Score: 45.80  E-value: 7.05e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 2896 PEVDVNLPKADLDVSGP--------KVDIDVPDVN--------IEGpDAKLKGpkfkMPEVNIKA-PKISMPDLNLNLKG 2958
Cdd:COG2911     89 DDLDLRSGGNRLTLSGNlsaasldgDLDLDAPDLAdlaallpgLAG-SLSGDG----LDSLSLDAdGTLAQHRLDLDAKG 163
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 2959 PNVKGDVDVS----------IPNIEgDLKGPSLDIKSP-KLDVNAPDIDV------HGPEGKLKGPKLKMPDMHVSMPKI 3021
Cdd:COG2911    164 EPASLSLALSggldrddggtLSRLD-FLNTGRWGLAAPaTLSYDDGRVTLgplclaGGGSLCLSGTLGGTLDLQLRLKNL 242
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 3022 SMPEI------DLNLKGsKVKGDVDISG----PKLEGDIKVP---RVDLKGPEVDISAPKVNIDGKAKKSRFKLpkfnfs 3088
Cdd:COG2911    243 PLALLnpflpdDLGLSG-TLNGDADLSGglanPQGDASLSLSgdlTLNDGLGGLPLGLGDLTLNARLANGRLTL------ 315
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 3089 GSKVQTPEVDVklkkPDVDITAPKVDINAPEVEVQGKVKGSKFKMPFLSisspkVSMPDVELNLKGpKVKGDLDAAG--- 3165
Cdd:COG2911    316 DLTLDGGGLGT----LSLSGSVPLADGLPPSAPLDGNLRLDNLDLALLN-----PLLPGVLERLSG-QLNGDLRLSGtla 385
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 3166 -PNLEGDFKGPKVDIKAPD--VQLNAPDVDVHgpewnlkmpkmkmpkfgVSGIKAEGPDVAVDLPKGDINIEGpSMNIEG 3242
Cdd:COG2911    386 aPQLNGQLTLDDGRLKLPAlgVRLTDINLRLR-----------------FDGDRLTLDGLTADSGGGTLTLSG-TVDLDG 447
                          410       420       430       440       450       460       470
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039758060 3243 PELNVEcpeGSLKGPKFK---MPEMNIKApkismpDIDLNLKGPKvkgdvdvSLPKVEGEIKVPEVDIKGPK 3311
Cdd:COG2911    448 LSWPAD---LTLKGDNLRvlnPPDYTATV------SGDLTLTGTP-------DGPTLSGNVTVPRARITLPE 503
Herpes_BLLF1 super family cl37540
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
3545-3737 9.37e-04

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


The actual alignment was detected with superfamily member pfam05109:

Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 45.68  E-value: 9.37e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 3545 GPKVDIDVPDVNVEG---PDMKVKGPKFRMPEINIKAPKISmpdvdlelkGPKVKGAfDGSVPKIEGTLKGPEIDMKGPG 3621
Cdd:pfam05109  424 APESTTTSPTLNTTGfaaPNTTTGLPSSTHVPTNLTAPAST---------GPTVSTA-DVTSPTPAGTTSGASPVTPSPS 493
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 3622 LDFEGPDAKlsGPNLKMPSLEVSVPKITGPDANVHLKTPKVGISAPKLGGgevdlKGPKVDLETPSLDVHMESPDINIEG 3701
Cdd:pfam05109  494 PRDNGTESK--APDMTSPTSAVTTPTPNATSPTPAVTTPTPNATSPTLGK-----TSPTSAVTTPTPNATSPTPAVTTPT 566
                          170       180       190
                   ....*....|....*....|....*....|....*.
gi 1039758060 3702 PDVKVPKFKKPKFGFGAKSPKADIKTPTVDVTVPEA 3737
Cdd:pfam05109  567 PNATIPTLGKTSPTSAVTTPTPNATSPTVGETSPQA 602
AsmA super family cl34531
Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall ...
1025-1468 1.85e-03

Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall/membrane/envelope biogenesis];


The actual alignment was detected with superfamily member COG2982:

Pssm-ID: 442221 [Multi-domain]  Cd Length: 491  Bit Score: 44.26  E-value: 1.85e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 1025 DVDISV-PKLDISAPDLNLEGPEGKLKGPKFKMPEMhfkapkvslpDVDLDLkgpkmkgnldmsAPKIEGEMKAPDVDIK 1103
Cdd:COG2982     55 DLSLSLfPWPGVTLGDVTLSNPDGFGGPPLASAERL----------ELDLAL------------LPLLSGELEVDEITLD 112
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 1104 GPNVDIkapEVDVQG-PEWSLKMPKMKMPKfsmptlKGEGPDVDVSLPKATID---------VSGPKLDIETSDVSLEGP 1173
Cdd:COG2982    113 GPVINL---ERDADGrANWDFLLAAAAAAA------DAEASAWSLDIGRLEITdgrlvyddaASGADLTLDDLNLTLSGP 183
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 1174 EgklkgpkfkmPDMHFKApkismpDVDLNMKGPKVKGDMDVTVPKIEGEMKV-PDVDIKGPKVDISApDVDVQGPDWHLK 1252
Cdd:COG2982    184 S----------LDGPFRL------SGSGRLNGQPLTLDGKIGGLLALGPYPLkLDLRSGDLRLSLDG-TVDLAGLDGQLA 246
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 1253 MPKMKMPKFsMPGFKAEGPEVSLPKADLDVSGPKVDIDVPDVNIEGPDAKLKG---------PKFkmpEMNIKAPKISMP 1323
Cdd:COG2982    247 LSGPSLRDL-LALLGVTLPEPGPFSLSGRLTADGDRLRLEDLKGTLGDSDLTGdlsvtggdrPAL---TGDLASDRLDLD 322
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 1324 DLhlkGPKVKGDVDVSLPKVEGDLKGPDIDIKGpkmdINAPDMDVQgpdwhLKMPKMKMPKFSMpgfkaegpevdvNLPK 1403
Cdd:COG2982    323 DL---LPAAPAAAAAGAPAAARGLPDAPLDLSA----LRALDADVR-----LSADSLKLGGLPL------------GDLA 378
                          410       420       430       440       450       460       470
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039758060 1404 ADIDVSGPKVDIEapDVSIEGPEGKLKGP---KFKMPDMHFKApKISMPDVDL-----NIKGPK---GKADVDASL 1468
Cdd:COG2982    379 AHLTLDDGRLDLD--PLSAGLYGGTLSGSltlDARGDPPRVAL-KLSLSGVDLgpllpDLAGFDrlsGTLNGDLDL 451
 
Name Accession Description Interval E-value
TamB COG2911
Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, ...
3882-4385 3.39e-10

Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 442155 [Multi-domain]  Cd Length: 766  Bit Score: 66.60  E-value: 3.39e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 3882 VEASGPKIEGNLKGPKVQANLDTPDINIEG-PEAKIKAPSFSVSA-----PQVSIPDVNVNLKG--------PKIKGDVP 3947
Cdd:COG2911     58 LDAPEGALSGLLDLVQATLDAEGLDLASSAlDDLDLRSGGNRLTLsgnlsAASLDGDLDLDAPDladlaallPGLAGSLS 137
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 3948 SVGLEGPNIDLQGPEGKIKFpkfslpKISAPGVKMEGGSTEIGAQMPSLEGGLSTSDmKLEGPHLSLKGPGvdlpSVDLS 4027
Cdd:COG2911    138 GDGLDSLSLDADGTLAQHRL------DLDAKGEPASLSLALSGGLDRDDGGTLSRLD-FLNTGRWGLAAPA----TLSYD 206
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 4028 MPKVSGPDLDMNLKGP-SLKGDLGASsPSMKLHAPGLDLKGVGgkvHIGADGVKMSG-IDATTALSVGAPDVTLKG-PSL 4104
Cdd:COG2911    207 DGRVTLGPLCLAGGGSlCLSGTLGGT-LDLQLRLKNLPLALLN---PFLPDDLGLSGtLNGDADLSGGLANPQGDAsLSL 282
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 4105 QGDLAVSGDIKCPKVSVATPDVSLEASEGAVKLphmklpQFGISTPGSD-LDINIKGPQVCGELKGSGMDVNLKGPQISA 4183
Cdd:COG2911    283 SGDLTLNDGLGGLPLGLGDLTLNARLANGRLTL------DLTLDGGGLGtLSLSGSVPLADGLPPSAPLDGNLRLDNLDL 356
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 4184 -------PSMDFNLEGpKVKGSLGAAGELKGPAIGG--ALPGISIQGPEGNLQMPGIKAsgcDVKLSSGQISGPEIKGDL 4254
Cdd:COG2911    357 allnpllPGVLERLSG-QLNGDLRLSGTLAAPQLNGqlTLDDGRLKLPALGVRLTDINL---RLRFDGDRLTLDGLTADS 432
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 4255 KGSGLGLHGAVP--------DIGVKGPSFNV---------ASPESDFGVSLKGPKVKGGVDVSGG-VSVPDINLGEGHMS 4316
Cdd:COG2911    433 GGGTLTLSGTVDldglswpaDLTLKGDNLRVlnppdytatVSGDLTLTGTPDGPTLSGNVTVPRArITLPELPPSAVSLS 512
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 4317 ----VKGSGVEWKGPQVSSSLNLDTS---KLAGNLHFSGP----KIEGDVKGGQTGLQGPGLSvsgpqGHLESESGKVTF 4385
Cdd:COG2911    513 ddvvVVNRPPEPVPEEEAAGLPLDLDlnvNLGDDVRVRGFgldaRLGGDLRLTGTPGGAPRLT-----GEINLVRGRYNA 587
PDZ2-PDZRN4-like cd06716
PDZ domain 2 of PDZ domain-containing RING finger protein 4 (PDZRN4), PDZRN3-B, and related ...
23-57 3.73e-04

PDZ domain 2 of PDZ domain-containing RING finger protein 4 (PDZRN4), PDZRN3-B, and related domains; PDZ (PSD-95 (Postsynaptic density protein 95), Dlg (Discs large protein), and ZO-1 (Zonula occludens-1)) domain 1 of PDZRN4, PDZRN3-B, and related domains. PDZRN4 (also known as ligand of numb protein X 4, and SEMACAP3-like protein) contains an N-terminal RING domain and two tandem repeat PDZ domains. It is involved in the progression of cancer, including human liver cancer and breast cancer, and may contribute to the tumorigenesis of rectal adenocarcinoma. Danio rerio PDZRN3-B may participate in neurogenesis: the first PDZ domain of Danio rerio Pdzrn3 interacts with Kidins220 (Kinase D-interacting substrate 220 kD, also named Ankyrin Repeat-Rich Membrane Spanning), a crucial mediator of signal transduction in neural tissues. PDZ domains usually bind in a sequence-specific manner to short peptide sequences located at the C-terminal end of their partner proteins (known as PDZ binding motifs). The PDZ superfamily includes canonical PDZ domains as well as those with circular permutations and domain swapping mediated by beta-strands. This PDZRN4-like family PDZ2 domain is a canonical PDZ domain containing six beta-strands A-F and two alpha-helices (alpha-helix 1 and 2), arranged in the order: beta-strands A, B, C, alpha-helix 1, beta-strands D, E, alpha-helix 2 and beta-strand F.


Pssm-ID: 467200 [Multi-domain]  Cd Length: 88  Bit Score: 42.26  E-value: 3.73e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 1039758060   23 GLTIAQRDD-----GVFVQEVMQNSPAARTGVVKEGDQIV 57
Cdd:cd06716     18 GLTLCYRTDdeedtGIYVSEVDPNSIAAKDGRIREGDQIL 57
TamB COG2911
Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, ...
2896-3311 7.05e-04

Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 442155 [Multi-domain]  Cd Length: 766  Bit Score: 45.80  E-value: 7.05e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 2896 PEVDVNLPKADLDVSGP--------KVDIDVPDVN--------IEGpDAKLKGpkfkMPEVNIKA-PKISMPDLNLNLKG 2958
Cdd:COG2911     89 DDLDLRSGGNRLTLSGNlsaasldgDLDLDAPDLAdlaallpgLAG-SLSGDG----LDSLSLDAdGTLAQHRLDLDAKG 163
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 2959 PNVKGDVDVS----------IPNIEgDLKGPSLDIKSP-KLDVNAPDIDV------HGPEGKLKGPKLKMPDMHVSMPKI 3021
Cdd:COG2911    164 EPASLSLALSggldrddggtLSRLD-FLNTGRWGLAAPaTLSYDDGRVTLgplclaGGGSLCLSGTLGGTLDLQLRLKNL 242
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 3022 SMPEI------DLNLKGsKVKGDVDISG----PKLEGDIKVP---RVDLKGPEVDISAPKVNIDGKAKKSRFKLpkfnfs 3088
Cdd:COG2911    243 PLALLnpflpdDLGLSG-TLNGDADLSGglanPQGDASLSLSgdlTLNDGLGGLPLGLGDLTLNARLANGRLTL------ 315
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 3089 GSKVQTPEVDVklkkPDVDITAPKVDINAPEVEVQGKVKGSKFKMPFLSisspkVSMPDVELNLKGpKVKGDLDAAG--- 3165
Cdd:COG2911    316 DLTLDGGGLGT----LSLSGSVPLADGLPPSAPLDGNLRLDNLDLALLN-----PLLPGVLERLSG-QLNGDLRLSGtla 385
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 3166 -PNLEGDFKGPKVDIKAPD--VQLNAPDVDVHgpewnlkmpkmkmpkfgVSGIKAEGPDVAVDLPKGDINIEGpSMNIEG 3242
Cdd:COG2911    386 aPQLNGQLTLDDGRLKLPAlgVRLTDINLRLR-----------------FDGDRLTLDGLTADSGGGTLTLSG-TVDLDG 447
                          410       420       430       440       450       460       470
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039758060 3243 PELNVEcpeGSLKGPKFK---MPEMNIKApkismpDIDLNLKGPKvkgdvdvSLPKVEGEIKVPEVDIKGPK 3311
Cdd:COG2911    448 LSWPAD---LTLKGDNLRvlnPPDYTATV------SGDLTLTGTP-------DGPTLSGNVTVPRARITLPE 503
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
3545-3737 9.37e-04

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 45.68  E-value: 9.37e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 3545 GPKVDIDVPDVNVEG---PDMKVKGPKFRMPEINIKAPKISmpdvdlelkGPKVKGAfDGSVPKIEGTLKGPEIDMKGPG 3621
Cdd:pfam05109  424 APESTTTSPTLNTTGfaaPNTTTGLPSSTHVPTNLTAPAST---------GPTVSTA-DVTSPTPAGTTSGASPVTPSPS 493
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 3622 LDFEGPDAKlsGPNLKMPSLEVSVPKITGPDANVHLKTPKVGISAPKLGGgevdlKGPKVDLETPSLDVHMESPDINIEG 3701
Cdd:pfam05109  494 PRDNGTESK--APDMTSPTSAVTTPTPNATSPTPAVTTPTPNATSPTLGK-----TSPTSAVTTPTPNATSPTPAVTTPT 566
                          170       180       190
                   ....*....|....*....|....*....|....*.
gi 1039758060 3702 PDVKVPKFKKPKFGFGAKSPKADIKTPTVDVTVPEA 3737
Cdd:pfam05109  567 PNATIPTLGKTSPTSAVTTPTPNATSPTVGETSPQA 602
AsmA COG2982
Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall ...
1025-1468 1.85e-03

Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442221 [Multi-domain]  Cd Length: 491  Bit Score: 44.26  E-value: 1.85e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 1025 DVDISV-PKLDISAPDLNLEGPEGKLKGPKFKMPEMhfkapkvslpDVDLDLkgpkmkgnldmsAPKIEGEMKAPDVDIK 1103
Cdd:COG2982     55 DLSLSLfPWPGVTLGDVTLSNPDGFGGPPLASAERL----------ELDLAL------------LPLLSGELEVDEITLD 112
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 1104 GPNVDIkapEVDVQG-PEWSLKMPKMKMPKfsmptlKGEGPDVDVSLPKATID---------VSGPKLDIETSDVSLEGP 1173
Cdd:COG2982    113 GPVINL---ERDADGrANWDFLLAAAAAAA------DAEASAWSLDIGRLEITdgrlvyddaASGADLTLDDLNLTLSGP 183
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 1174 EgklkgpkfkmPDMHFKApkismpDVDLNMKGPKVKGDMDVTVPKIEGEMKV-PDVDIKGPKVDISApDVDVQGPDWHLK 1252
Cdd:COG2982    184 S----------LDGPFRL------SGSGRLNGQPLTLDGKIGGLLALGPYPLkLDLRSGDLRLSLDG-TVDLAGLDGQLA 246
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 1253 MPKMKMPKFsMPGFKAEGPEVSLPKADLDVSGPKVDIDVPDVNIEGPDAKLKG---------PKFkmpEMNIKAPKISMP 1323
Cdd:COG2982    247 LSGPSLRDL-LALLGVTLPEPGPFSLSGRLTADGDRLRLEDLKGTLGDSDLTGdlsvtggdrPAL---TGDLASDRLDLD 322
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 1324 DLhlkGPKVKGDVDVSLPKVEGDLKGPDIDIKGpkmdINAPDMDVQgpdwhLKMPKMKMPKFSMpgfkaegpevdvNLPK 1403
Cdd:COG2982    323 DL---LPAAPAAAAAGAPAAARGLPDAPLDLSA----LRALDADVR-----LSADSLKLGGLPL------------GDLA 378
                          410       420       430       440       450       460       470
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039758060 1404 ADIDVSGPKVDIEapDVSIEGPEGKLKGP---KFKMPDMHFKApKISMPDVDL-----NIKGPK---GKADVDASL 1468
Cdd:COG2982    379 AHLTLDDGRLDLD--PLSAGLYGGTLSGSltlDARGDPPRVAL-KLSLSGVDLgpllpDLAGFDrlsGTLNGDLDL 451
DUF4097 pfam13349
Putative adhesin; This has a putative all-beta structure with a twenty-residue repeat with a ...
2912-3109 6.88e-03

Putative adhesin; This has a putative all-beta structure with a twenty-residue repeat with a highly conserved repeating GD, gly-asp, motif. It may form part of a bacterial adhesin.


Pssm-ID: 433135 [Multi-domain]  Cd Length: 246  Bit Score: 41.54  E-value: 6.88e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 2912 PKVDIDVPDVNIEGPDAKLKGPkfkmpeVNIKAPKISMPDLNLNLKgpNVKGDvDVSIPNIEGDLKGPSLDIKSPKLDVN 2991
Cdd:pfam13349   73 PKDYLDDLTVKTSSGDISVSDN------LALKDVILSSNSGDITLK--NVSAE-NLTIKSTSGDVSIDGSSAKKSKLITT 143
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 2992 APDIDVHGpeGKLKGPKLKMPDMHVSMpkiSMPEIDLNLKGSKVKGDVDISGPKlEGDIKvprVDLKGPEVDISAPKVNI 3071
Cdd:pfam13349  144 SGDIDLNN--VSGKDLDLKSTSGDINV---SNTTIAGSLKITATSGDIDLSLPD-SASFG---VDASSTSGDVTIPYKFD 214
                          170       180       190
                   ....*....|....*....|....*....|....*...
gi 1039758060 3072 DGKAKKSRFKlpKFNFSGSKVqtpeVDVKLKKPDVDIT 3109
Cdd:pfam13349  215 EEGTEENRIY--GTNGNGKHK----VDISTSSGDITVR 246
 
Name Accession Description Interval E-value
TamB COG2911
Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, ...
3882-4385 3.39e-10

Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 442155 [Multi-domain]  Cd Length: 766  Bit Score: 66.60  E-value: 3.39e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 3882 VEASGPKIEGNLKGPKVQANLDTPDINIEG-PEAKIKAPSFSVSA-----PQVSIPDVNVNLKG--------PKIKGDVP 3947
Cdd:COG2911     58 LDAPEGALSGLLDLVQATLDAEGLDLASSAlDDLDLRSGGNRLTLsgnlsAASLDGDLDLDAPDladlaallPGLAGSLS 137
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 3948 SVGLEGPNIDLQGPEGKIKFpkfslpKISAPGVKMEGGSTEIGAQMPSLEGGLSTSDmKLEGPHLSLKGPGvdlpSVDLS 4027
Cdd:COG2911    138 GDGLDSLSLDADGTLAQHRL------DLDAKGEPASLSLALSGGLDRDDGGTLSRLD-FLNTGRWGLAAPA----TLSYD 206
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 4028 MPKVSGPDLDMNLKGP-SLKGDLGASsPSMKLHAPGLDLKGVGgkvHIGADGVKMSG-IDATTALSVGAPDVTLKG-PSL 4104
Cdd:COG2911    207 DGRVTLGPLCLAGGGSlCLSGTLGGT-LDLQLRLKNLPLALLN---PFLPDDLGLSGtLNGDADLSGGLANPQGDAsLSL 282
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 4105 QGDLAVSGDIKCPKVSVATPDVSLEASEGAVKLphmklpQFGISTPGSD-LDINIKGPQVCGELKGSGMDVNLKGPQISA 4183
Cdd:COG2911    283 SGDLTLNDGLGGLPLGLGDLTLNARLANGRLTL------DLTLDGGGLGtLSLSGSVPLADGLPPSAPLDGNLRLDNLDL 356
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 4184 -------PSMDFNLEGpKVKGSLGAAGELKGPAIGG--ALPGISIQGPEGNLQMPGIKAsgcDVKLSSGQISGPEIKGDL 4254
Cdd:COG2911    357 allnpllPGVLERLSG-QLNGDLRLSGTLAAPQLNGqlTLDDGRLKLPALGVRLTDINL---RLRFDGDRLTLDGLTADS 432
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 4255 KGSGLGLHGAVP--------DIGVKGPSFNV---------ASPESDFGVSLKGPKVKGGVDVSGG-VSVPDINLGEGHMS 4316
Cdd:COG2911    433 GGGTLTLSGTVDldglswpaDLTLKGDNLRVlnppdytatVSGDLTLTGTPDGPTLSGNVTVPRArITLPELPPSAVSLS 512
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 4317 ----VKGSGVEWKGPQVSSSLNLDTS---KLAGNLHFSGP----KIEGDVKGGQTGLQGPGLSvsgpqGHLESESGKVTF 4385
Cdd:COG2911    513 ddvvVVNRPPEPVPEEEAAGLPLDLDlnvNLGDDVRVRGFgldaRLGGDLRLTGTPGGAPRLT-----GEINLVRGRYNA 587
TamB COG2911
Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, ...
3995-4250 1.39e-06

Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 442155 [Multi-domain]  Cd Length: 766  Bit Score: 54.66  E-value: 1.39e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 3995 SLEGGLSTSDMKLEGPHLSLKgpgVDLPSVDLSM---------PKVSGP-DLDMNLKG----PSLKGDLGASSPSMKLHA 4060
Cdd:COG2911    328 SLSGSVPLADGLPPSAPLDGN---LRLDNLDLALlnpllpgvlERLSGQlNGDLRLSGtlaaPQLNGQLTLDDGRLKLPA 404
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 4061 PGLDLKGVGGKVHIGADGVKMSGIDATTA---LSVGApDVTLKGPSLQGDLAVSGDikcpKVSV---------ATPDVSL 4128
Cdd:COG2911    405 LGVRLTDINLRLRFDGDRLTLDGLTADSGggtLTLSG-TVDLDGLSWPADLTLKGD----NLRVlnppdytatVSGDLTL 479
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 4129 EAS------EGAVKLP--HMKLPQFGISTPGSDLDINIKG--PQVCGELKGSGMDVNLKGpQISAPSmDFNLEGPKVKGS 4198
Cdd:COG2911    480 TGTpdgptlSGNVTVPraRITLPELPPSAVSLSDDVVVVNrpPEPVPEEEAAGLPLDLDL-NVNLGD-DVRVRGFGLDAR 557
                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1039758060 4199 LGAAGELKGPAiGGALpgisiqGPEGNLQMPG--IKASGCDVKLSSGQI--SGPEI 4250
Cdd:COG2911    558 LGGDLRLTGTP-GGAP------RLTGEINLVRgrYNAYGQRLTIERGSItfNGPPL 606
AsmA COG2982
Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall ...
3888-4258 7.31e-05

Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442221 [Multi-domain]  Cd Length: 491  Bit Score: 48.88  E-value: 7.31e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 3888 KIEGNLK---GPKVQANLDtpDINIEGPEAKIKAPSfsVSAPQVSIpDVNVnlkGPKIKGD--VPSVGLEGPNIDLQ--- 3959
Cdd:COG2982     51 TIDGDLSlslFPWPGVTLG--DVTLSNPDGFGGPPL--ASAERLEL-DLAL---LPLLSGEleVDEITLDGPVINLErda 122
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 3960 ----------GPEGKIKFPKFSLPKISAPGVKMEGGS--------------TEIGAQM--PSLEGGLS-TSDMKLEGPHL 4012
Cdd:COG2982    123 dgranwdfllAAAAAAADAEASAWSLDIGRLEITDGRlvyddaasgadltlDDLNLTLsgPSLDGPFRlSGSGRLNGQPL 202
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 4013 SLKGP-GVDLPSVDLSM-PKVSGPDLDMNLKG----PSLKGDLGASSPSMK--LHAPGLDLKGVG-----GKVHIGADGV 4079
Cdd:COG2982    203 TLDGKiGGLLALGPYPLkLDLRSGDLRLSLDGtvdlAGLDGQLALSGPSLRdlLALLGVTLPEPGpfslsGRLTADGDRL 282
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 4080 KMSGIdattALSVGapDVTLKG---------PSLQGDLAvSGDIKCPKVSVATP-DVSLEASEGAVKLPHMKLPQFGISt 4149
Cdd:COG2982    283 RLEDL----KGTLG--DSDLTGdlsvtggdrPALTGDLA-SDRLDLDDLLPAAPaAAAAGAPAAARGLPDAPLDLSALR- 354
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 4150 pGSDLDINIKGpqvcGELKGSGM-------DVNLKGPQISAPSMDFNLEGPKVKGSL-----------GAAGELKGPAIG 4211
Cdd:COG2982    355 -ALDADVRLSA----DSLKLGGLplgdlaaHLTLDDGRLDLDPLSAGLYGGTLSGSLtldargdpprvALKLSLSGVDLG 429
                          410       420       430       440
                   ....*....|....*....|....*....|....*....|....*...
gi 1039758060 4212 GALPGISIQGP-EGNLQMpgikasgcDVKLSSGQISGPEIKGDLKGSG 4258
Cdd:COG2982    430 PLLPDLAGFDRlSGTLNG--------DLDLSGTGNSVAALLASLNGSA 469
PDZ2-PDZRN4-like cd06716
PDZ domain 2 of PDZ domain-containing RING finger protein 4 (PDZRN4), PDZRN3-B, and related ...
23-57 3.73e-04

PDZ domain 2 of PDZ domain-containing RING finger protein 4 (PDZRN4), PDZRN3-B, and related domains; PDZ (PSD-95 (Postsynaptic density protein 95), Dlg (Discs large protein), and ZO-1 (Zonula occludens-1)) domain 1 of PDZRN4, PDZRN3-B, and related domains. PDZRN4 (also known as ligand of numb protein X 4, and SEMACAP3-like protein) contains an N-terminal RING domain and two tandem repeat PDZ domains. It is involved in the progression of cancer, including human liver cancer and breast cancer, and may contribute to the tumorigenesis of rectal adenocarcinoma. Danio rerio PDZRN3-B may participate in neurogenesis: the first PDZ domain of Danio rerio Pdzrn3 interacts with Kidins220 (Kinase D-interacting substrate 220 kD, also named Ankyrin Repeat-Rich Membrane Spanning), a crucial mediator of signal transduction in neural tissues. PDZ domains usually bind in a sequence-specific manner to short peptide sequences located at the C-terminal end of their partner proteins (known as PDZ binding motifs). The PDZ superfamily includes canonical PDZ domains as well as those with circular permutations and domain swapping mediated by beta-strands. This PDZRN4-like family PDZ2 domain is a canonical PDZ domain containing six beta-strands A-F and two alpha-helices (alpha-helix 1 and 2), arranged in the order: beta-strands A, B, C, alpha-helix 1, beta-strands D, E, alpha-helix 2 and beta-strand F.


Pssm-ID: 467200 [Multi-domain]  Cd Length: 88  Bit Score: 42.26  E-value: 3.73e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 1039758060   23 GLTIAQRDD-----GVFVQEVMQNSPAARTGVVKEGDQIV 57
Cdd:cd06716     18 GLTLCYRTDdeedtGIYVSEVDPNSIAAKDGRIREGDQIL 57
TamB COG2911
Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, ...
2896-3311 7.05e-04

Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 442155 [Multi-domain]  Cd Length: 766  Bit Score: 45.80  E-value: 7.05e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 2896 PEVDVNLPKADLDVSGP--------KVDIDVPDVN--------IEGpDAKLKGpkfkMPEVNIKA-PKISMPDLNLNLKG 2958
Cdd:COG2911     89 DDLDLRSGGNRLTLSGNlsaasldgDLDLDAPDLAdlaallpgLAG-SLSGDG----LDSLSLDAdGTLAQHRLDLDAKG 163
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 2959 PNVKGDVDVS----------IPNIEgDLKGPSLDIKSP-KLDVNAPDIDV------HGPEGKLKGPKLKMPDMHVSMPKI 3021
Cdd:COG2911    164 EPASLSLALSggldrddggtLSRLD-FLNTGRWGLAAPaTLSYDDGRVTLgplclaGGGSLCLSGTLGGTLDLQLRLKNL 242
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 3022 SMPEI------DLNLKGsKVKGDVDISG----PKLEGDIKVP---RVDLKGPEVDISAPKVNIDGKAKKSRFKLpkfnfs 3088
Cdd:COG2911    243 PLALLnpflpdDLGLSG-TLNGDADLSGglanPQGDASLSLSgdlTLNDGLGGLPLGLGDLTLNARLANGRLTL------ 315
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 3089 GSKVQTPEVDVklkkPDVDITAPKVDINAPEVEVQGKVKGSKFKMPFLSisspkVSMPDVELNLKGpKVKGDLDAAG--- 3165
Cdd:COG2911    316 DLTLDGGGLGT----LSLSGSVPLADGLPPSAPLDGNLRLDNLDLALLN-----PLLPGVLERLSG-QLNGDLRLSGtla 385
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 3166 -PNLEGDFKGPKVDIKAPD--VQLNAPDVDVHgpewnlkmpkmkmpkfgVSGIKAEGPDVAVDLPKGDINIEGpSMNIEG 3242
Cdd:COG2911    386 aPQLNGQLTLDDGRLKLPAlgVRLTDINLRLR-----------------FDGDRLTLDGLTADSGGGTLTLSG-TVDLDG 447
                          410       420       430       440       450       460       470
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039758060 3243 PELNVEcpeGSLKGPKFK---MPEMNIKApkismpDIDLNLKGPKvkgdvdvSLPKVEGEIKVPEVDIKGPK 3311
Cdd:COG2911    448 LSWPAD---LTLKGDNLRvlnPPDYTATV------SGDLTLTGTP-------DGPTLSGNVTVPRARITLPE 503
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
3545-3737 9.37e-04

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 45.68  E-value: 9.37e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 3545 GPKVDIDVPDVNVEG---PDMKVKGPKFRMPEINIKAPKISmpdvdlelkGPKVKGAfDGSVPKIEGTLKGPEIDMKGPG 3621
Cdd:pfam05109  424 APESTTTSPTLNTTGfaaPNTTTGLPSSTHVPTNLTAPAST---------GPTVSTA-DVTSPTPAGTTSGASPVTPSPS 493
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 3622 LDFEGPDAKlsGPNLKMPSLEVSVPKITGPDANVHLKTPKVGISAPKLGGgevdlKGPKVDLETPSLDVHMESPDINIEG 3701
Cdd:pfam05109  494 PRDNGTESK--APDMTSPTSAVTTPTPNATSPTPAVTTPTPNATSPTLGK-----TSPTSAVTTPTPNATSPTPAVTTPT 566
                          170       180       190
                   ....*....|....*....|....*....|....*.
gi 1039758060 3702 PDVKVPKFKKPKFGFGAKSPKADIKTPTVDVTVPEA 3737
Cdd:pfam05109  567 PNATIPTLGKTSPTSAVTTPTPNATSPTVGETSPQA 602
PDZ_canonical cd00136
canonical PDZ domain; Canonical PDZ (PSD-95 (Postsynaptic density protein 95), Dlg (Discs ...
23-57 1.41e-03

canonical PDZ domain; Canonical PDZ (PSD-95 (Postsynaptic density protein 95), Dlg (Discs large protein), and ZO-1 (Zonula occludens-1)) domain. PDZ domains usually bind to short specific peptide sequences located at the C-terminal end of their partner proteins known as PDZ binding motifs. These domains can also interact with internal peptide motifs and certain lipids, and can take part in a head-to-tail oligomerization with other PDZ domains. The PDZ superfamily includes canonical PDZ domains as well as those with circular permutations and domain swapping mediated by beta-strands. The canonical PDZ domain contains six beta-strands A-F and two alpha-helices (alpha-helix 1 and 2), arranged in the order: beta-strands A, B, C, alpha-helix 1, beta-strands D, E, alpha-helix 2 and beta-strand F.


Pssm-ID: 467153 [Multi-domain]  Cd Length: 81  Bit Score: 40.22  E-value: 1.41e-03
                           10        20        30
                   ....*....|....*....|....*....|....*...
gi 1039758060   23 GLTIA---QRDDGVFVQEVMQNSPAARTGVVKEGDQIV 57
Cdd:cd00136     13 GFSIRggkDGGGGIFVSRVEPGGPAARDGRLRVGDRIL 50
AsmA COG2982
Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall ...
1025-1468 1.85e-03

Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442221 [Multi-domain]  Cd Length: 491  Bit Score: 44.26  E-value: 1.85e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 1025 DVDISV-PKLDISAPDLNLEGPEGKLKGPKFKMPEMhfkapkvslpDVDLDLkgpkmkgnldmsAPKIEGEMKAPDVDIK 1103
Cdd:COG2982     55 DLSLSLfPWPGVTLGDVTLSNPDGFGGPPLASAERL----------ELDLAL------------LPLLSGELEVDEITLD 112
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 1104 GPNVDIkapEVDVQG-PEWSLKMPKMKMPKfsmptlKGEGPDVDVSLPKATID---------VSGPKLDIETSDVSLEGP 1173
Cdd:COG2982    113 GPVINL---ERDADGrANWDFLLAAAAAAA------DAEASAWSLDIGRLEITdgrlvyddaASGADLTLDDLNLTLSGP 183
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 1174 EgklkgpkfkmPDMHFKApkismpDVDLNMKGPKVKGDMDVTVPKIEGEMKV-PDVDIKGPKVDISApDVDVQGPDWHLK 1252
Cdd:COG2982    184 S----------LDGPFRL------SGSGRLNGQPLTLDGKIGGLLALGPYPLkLDLRSGDLRLSLDG-TVDLAGLDGQLA 246
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 1253 MPKMKMPKFsMPGFKAEGPEVSLPKADLDVSGPKVDIDVPDVNIEGPDAKLKG---------PKFkmpEMNIKAPKISMP 1323
Cdd:COG2982    247 LSGPSLRDL-LALLGVTLPEPGPFSLSGRLTADGDRLRLEDLKGTLGDSDLTGdlsvtggdrPAL---TGDLASDRLDLD 322
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 1324 DLhlkGPKVKGDVDVSLPKVEGDLKGPDIDIKGpkmdINAPDMDVQgpdwhLKMPKMKMPKFSMpgfkaegpevdvNLPK 1403
Cdd:COG2982    323 DL---LPAAPAAAAAGAPAAARGLPDAPLDLSA----LRALDADVR-----LSADSLKLGGLPL------------GDLA 378
                          410       420       430       440       450       460       470
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039758060 1404 ADIDVSGPKVDIEapDVSIEGPEGKLKGP---KFKMPDMHFKApKISMPDVDL-----NIKGPK---GKADVDASL 1468
Cdd:COG2982    379 AHLTLDDGRLDLD--PLSAGLYGGTLSGSltlDARGDPPRVAL-KLSLSGVDLgpllpDLAGFDrlsGTLNGDLDL 451
AsmA COG2982
Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall ...
2972-3308 1.88e-03

Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442221 [Multi-domain]  Cd Length: 491  Bit Score: 44.26  E-value: 1.88e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 2972 IEGDLkgpSLDIkSPKLDVNAPDIDVHGPEGKLKGPKLKMPDMhvsmpkismpEIDLNLkgskvkgdvdisGPKLEGDIK 3051
Cdd:COG2982     52 IDGDL---SLSL-FPWPGVTLGDVTLSNPDGFGGPPLASAERL----------ELDLAL------------LPLLSGELE 105
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 3052 VPRVDLKGPEVDI--------------SAPKVNIDGKAKKSRFKLPKFNFSGSKV--QTPEVDVKLKKPDVDITAPKVDI 3115
Cdd:COG2982    106 VDEITLDGPVINLerdadgranwdfllAAAAAAADAEASAWSLDIGRLEITDGRLvyDDAASGADLTLDDLNLTLSGPSL 185
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 3116 NAP-EVEVQGKVKGSKFKM-----PFLSISS----PKVSMPDVELNLKG----PKVKGDLDAAGPNL------------- 3168
Cdd:COG2982    186 DGPfRLSGSGRLNGQPLTLdgkigGLLALGPyplkLDLRSGDLRLSLDGtvdlAGLDGQLALSGPSLrdllallgvtlpe 265
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 3169 ------EGDFKGPKVDIKAPDVQLNAPDVDVHG---------PEW--NLKMPKMKMPKFG---VSGIKAEGPDVAVDLPK 3228
Cdd:COG2982    266 pgpfslSGRLTADGDRLRLEDLKGTLGDSDLTGdlsvtggdrPALtgDLASDRLDLDDLLpaaPAAAAAGAPAAARGLPD 345
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 3229 GDINIEG-PSMNIegpelnvecpEGSLKGPKFKMPEMNI---------KAPKISMPDIDLNLKGPKVKG----DVDVSLP 3294
Cdd:COG2982    346 APLDLSAlRALDA----------DVRLSADSLKLGGLPLgdlaahltlDDGRLDLDPLSAGLYGGTLSGsltlDARGDPP 415
                          410
                   ....*....|....
gi 1039758060 3295 KVEGEIKVPEVDIK 3308
Cdd:COG2982    416 RVALKLSLSGVDLG 429
DUF4097 pfam13349
Putative adhesin; This has a putative all-beta structure with a twenty-residue repeat with a ...
2912-3109 6.88e-03

Putative adhesin; This has a putative all-beta structure with a twenty-residue repeat with a highly conserved repeating GD, gly-asp, motif. It may form part of a bacterial adhesin.


Pssm-ID: 433135 [Multi-domain]  Cd Length: 246  Bit Score: 41.54  E-value: 6.88e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 2912 PKVDIDVPDVNIEGPDAKLKGPkfkmpeVNIKAPKISMPDLNLNLKgpNVKGDvDVSIPNIEGDLKGPSLDIKSPKLDVN 2991
Cdd:pfam13349   73 PKDYLDDLTVKTSSGDISVSDN------LALKDVILSSNSGDITLK--NVSAE-NLTIKSTSGDVSIDGSSAKKSKLITT 143
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039758060 2992 APDIDVHGpeGKLKGPKLKMPDMHVSMpkiSMPEIDLNLKGSKVKGDVDISGPKlEGDIKvprVDLKGPEVDISAPKVNI 3071
Cdd:pfam13349  144 SGDIDLNN--VSGKDLDLKSTSGDINV---SNTTIAGSLKITATSGDIDLSLPD-SASFG---VDASSTSGDVTIPYKFD 214
                          170       180       190
                   ....*....|....*....|....*....|....*...
gi 1039758060 3072 DGKAKKSRFKlpKFNFSGSKVqtpeVDVKLKKPDVDIT 3109
Cdd:pfam13349  215 EEGTEENRIY--GTNGNGKHK----VDISTSSGDITVR 246
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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