NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1039738034|ref|XP_017170215|]
View 

7-methylguanosine phosphate-specific 5'-nucleotidase isoform X5 [Mus musculus]

Protein Classification

HAD family hydrolase( domain architecture ID 10530737)

HAD (haloacid dehalogenase) family hydrolase; the HAD family includes phosphoesterases, ATPases, phosphonatases, dehalogenases, and sugar phosphomutases acting on a remarkably diverse set of substrates

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
UMPH-1 pfam05822
Pyrimidine 5'-nucleotidase (UMPH-1); This family consists of several eukaryotic pyrimidine 5 ...
11-256 1.15e-161

Pyrimidine 5'-nucleotidase (UMPH-1); This family consists of several eukaryotic pyrimidine 5'-nucleotidase proteins. P5'N-1, also known as uridine monophosphate hydrolase-1 (UMPH-1), is a member of a large functional group of enzymes, characterized by the ability to dephosphorylate nucleic acids. P5'N-1 catalyzes the dephosphorylation of pyrimidine nucleoside monophosphates to the corresponding nucleosides. Deficiencies in this proteins function can lead to several different disorders in humans.


:

Pssm-ID: 310424 [Multi-domain]  Cd Length: 246  Bit Score: 448.35  E-value: 1.15e-161
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039738034  11 MTLSRFAYNGQRCPSSHNILDNSKIISEDCRKELTELFHHYYPIEIDPHRTIKEKLPHMVQWWSKAHSLLCQQRIQKVQI 90
Cdd:pfam05822   1 MTLSKFRVNGERCPSSHGIFDNCKSIPEECRKKLRELYHKYYPIEIDPHMPIEEKVPYMVEWWTKSHALLIGQGLQKEAI 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039738034  91 AQVVGESTAMLREGYKTFFDTLYQNNIPLFIFSAGIGDILEEIIRQMKVFHPNIHIVSNYMDFSEDGFLKGFKGQLIHTY 170
Cdd:pfam05822  81 AEVVAESDIMLRDGTHEFFDDLQQLNVPVLIFSAGLGDVLEEVLRQANVMHPNVKVVSNFMDFDDDGVLNGFKGPLIHTF 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039738034 171 NKNSSVCENSSYFQQLQNKTNIILLGDSIGDLTMADGVPGVQNILKIGFLNDKVEERRERYMDSYDIVLEKDETLDVVNG 250
Cdd:pfam05822 161 NKNETVLDGTEYFDQLHTRDNIILLGDSLGDLGMADGVPSVEHILKIGFLNDKVEENLDKYMDAFDIVLVDDQTMDVPNA 240

                  ....*.
gi 1039738034 251 LLRHIL 256
Cdd:pfam05822 241 ILEMIL 246
 
Name Accession Description Interval E-value
UMPH-1 pfam05822
Pyrimidine 5'-nucleotidase (UMPH-1); This family consists of several eukaryotic pyrimidine 5 ...
11-256 1.15e-161

Pyrimidine 5'-nucleotidase (UMPH-1); This family consists of several eukaryotic pyrimidine 5'-nucleotidase proteins. P5'N-1, also known as uridine monophosphate hydrolase-1 (UMPH-1), is a member of a large functional group of enzymes, characterized by the ability to dephosphorylate nucleic acids. P5'N-1 catalyzes the dephosphorylation of pyrimidine nucleoside monophosphates to the corresponding nucleosides. Deficiencies in this proteins function can lead to several different disorders in humans.


Pssm-ID: 310424 [Multi-domain]  Cd Length: 246  Bit Score: 448.35  E-value: 1.15e-161
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039738034  11 MTLSRFAYNGQRCPSSHNILDNSKIISEDCRKELTELFHHYYPIEIDPHRTIKEKLPHMVQWWSKAHSLLCQQRIQKVQI 90
Cdd:pfam05822   1 MTLSKFRVNGERCPSSHGIFDNCKSIPEECRKKLRELYHKYYPIEIDPHMPIEEKVPYMVEWWTKSHALLIGQGLQKEAI 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039738034  91 AQVVGESTAMLREGYKTFFDTLYQNNIPLFIFSAGIGDILEEIIRQMKVFHPNIHIVSNYMDFSEDGFLKGFKGQLIHTY 170
Cdd:pfam05822  81 AEVVAESDIMLRDGTHEFFDDLQQLNVPVLIFSAGLGDVLEEVLRQANVMHPNVKVVSNFMDFDDDGVLNGFKGPLIHTF 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039738034 171 NKNSSVCENSSYFQQLQNKTNIILLGDSIGDLTMADGVPGVQNILKIGFLNDKVEERRERYMDSYDIVLEKDETLDVVNG 250
Cdd:pfam05822 161 NKNETVLDGTEYFDQLHTRDNIILLGDSLGDLGMADGVPSVEHILKIGFLNDKVEENLDKYMDAFDIVLVDDQTMDVPNA 240

                  ....*.
gi 1039738034 251 LLRHIL 256
Cdd:pfam05822 241 ILEMIL 246
HAD_5NT cd07504
haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to human cytosolic IIIA and IIIB; 5 ...
4-256 8.40e-161

haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to human cytosolic IIIA and IIIB; 5'-nucleotidases dephosphorylate nucleoside 5prime-monophosphates. This family includes human 5'-nucleotidase, cytosolic IIIA (cN-IIIA, previously called cN-III; NT5C3A) the main pyrimidine 5'-nucleotidase in erythrocytes which dephosphorylates the pyrimidine nucleotides CMP, UMP, TMP, and the purine 7-methylguanosine monophosphate (m7GM), and possesses phosphotransferase activity. It also includes human 5'-nucleotidase, cytosolic IIIB (cN-IIIB; NT5C3B) which has a strong preference for m7GMP, dephosphorylates CMP and UMP and, with significantly lower efficiency, GMP and AMP, and can also act as a phosphotransferase. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319807 [Multi-domain]  Cd Length: 273  Bit Score: 447.15  E-value: 8.40e-161
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039738034   4 EVISDFDMTLSRFAYNGQRCPSSHNILDNSKIISEDCRKELTELFHHYYPIEIDPHRTIKEKLPHMVQWWSKAHSLLCQQ 83
Cdd:cd07504    21 QIISDFDMTLSRFRYNGGRCPTCHNIFDNCKLLTEECRAKLVQLKEKYYPIEIDPHLTIEEKVPYMEEWWTKSHELLIEQ 100
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039738034  84 RIQKVQIAQVVGESTAMLREGYKTFFDTLYQNNIPLFIFSAGIGDILEEIIRQMKVFHPNIHIVSNYMDFSEDGFLKGFK 163
Cdd:cd07504   101 GFQKDAIDQIVAESDIALRDGYEEFFEKLQQHGIPVLIFSAGLGDIIEEVLRQAGVYHPNVKVVSNFMDFDDNGVLTGFK 180
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039738034 164 GQLIHTYNKNSSVCENSSYFQQLQNKTNIILLGDSIGDLTMADGVPGVQNILKIGFLNDKVEERRERYMDSYDIVLEKDE 243
Cdd:cd07504   181 GPLIHVFNKNESALKNTDYFKQLKGRTNIILLGDSIGDLRMADGVPNVEHILKIGFLNDKVEELLEKYMDSYDIVLVNDE 260
                         250
                  ....*....|...
gi 1039738034 244 TLDVVNGLLRHIL 256
Cdd:cd07504   261 TLDVPNSILQKIL 273
HAD-SF-IE TIGR01544
haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544; This model represents a ...
4-255 2.24e-118

haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544; This model represents a small group of metazoan sequences. The sequences from mouse are annotated as Pyrimidine 5'-nucleotidases, aparrently in reference to HSPC233, the human homolog. However, no such annotation can currently be found for this gene. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.


Pssm-ID: 273683 [Multi-domain]  Cd Length: 283  Bit Score: 340.29  E-value: 2.24e-118
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039738034   4 EVISDFDMTLSRFAY-NGQRCPSSHNILDNSKIISEDCRKELTELFHHYYPIEIDPHRTIKEKLPHMVQWWSKAHSLLCQ 82
Cdd:TIGR01544  30 QIISDFDYTLSRFRTeDGGRVPTSHGIFDACQSLPEEFKAKTDKLKHKYYPIEIDPHLTIEEKVPYMIEWWTKSHELTVG 109
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039738034  83 QRIQKVQIAQVVGESTAMLREGYKTFFDTLYQNNIPLFIFSAGIGDILEEIIRQMKVFHPNIHIVSNYMDFSEDGFLKGF 162
Cdd:TIGR01544 110 FPFDKSEIDQIVSKSTHALKDGTEEFFADLQRHGIPTLIFSAGIGNSVESVLRQANVLHPNVKVVSNFLQFDEDGLLDGF 189
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039738034 163 KGQLIHTYNKNSSVC-ENSSYFQQLQNKTNIILLGDSIGDLTMADGVPGVQNILKIGFLNDKVEERRERYMDSYDIVLEK 241
Cdd:TIGR01544 190 QQPLIHTFNKNETVLnETTEYFDLVHTRDNIILLGDSIGDADMASGVPASSHILKIGYLNDHVDANLKKYMDTYDIVLVD 269
                         250
                  ....*....|....
gi 1039738034 242 DETLDVVNGLLRHI 255
Cdd:TIGR01544 270 DQTLDVARTILSLI 283
mtnX PRK09552
2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
97-248 2.09e-06

2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed


Pssm-ID: 236562  Cd Length: 219  Bit Score: 47.28  E-value: 2.09e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039738034  97 STAMLREGYKTFFDTLYQNNIPLFIFSAGIgD-----ILEEIIrqmkvfhPNIHIVSNYMDFSedgflkgfkGQLIH--- 168
Cdd:PRK09552   71 ETAEIREGFHEFVQFVKENNIPFYVVSGGM-DffvypLLQGLI-------PKEQIYCNGSDFS---------GEYITitw 133
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039738034 169 -----TYNKNSSVCENSSYFQQLQNKTN-IILLGDSIGDLT---MADGVpgvqniLKIGFLNDKVEERRERYM---DSYD 236
Cdd:PRK09552  134 phpcdEHCQNHCGCCKPSLIRKLSDTNDfHIVIGDSITDLEaakQADKV------FARDFLITKCEELGIPYTpfeTFHD 207
                         170
                  ....*....|..
gi 1039738034 237 IVLEKDETLDVV 248
Cdd:PRK09552  208 VQTELKHLLEVK 219
 
Name Accession Description Interval E-value
UMPH-1 pfam05822
Pyrimidine 5'-nucleotidase (UMPH-1); This family consists of several eukaryotic pyrimidine 5 ...
11-256 1.15e-161

Pyrimidine 5'-nucleotidase (UMPH-1); This family consists of several eukaryotic pyrimidine 5'-nucleotidase proteins. P5'N-1, also known as uridine monophosphate hydrolase-1 (UMPH-1), is a member of a large functional group of enzymes, characterized by the ability to dephosphorylate nucleic acids. P5'N-1 catalyzes the dephosphorylation of pyrimidine nucleoside monophosphates to the corresponding nucleosides. Deficiencies in this proteins function can lead to several different disorders in humans.


Pssm-ID: 310424 [Multi-domain]  Cd Length: 246  Bit Score: 448.35  E-value: 1.15e-161
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039738034  11 MTLSRFAYNGQRCPSSHNILDNSKIISEDCRKELTELFHHYYPIEIDPHRTIKEKLPHMVQWWSKAHSLLCQQRIQKVQI 90
Cdd:pfam05822   1 MTLSKFRVNGERCPSSHGIFDNCKSIPEECRKKLRELYHKYYPIEIDPHMPIEEKVPYMVEWWTKSHALLIGQGLQKEAI 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039738034  91 AQVVGESTAMLREGYKTFFDTLYQNNIPLFIFSAGIGDILEEIIRQMKVFHPNIHIVSNYMDFSEDGFLKGFKGQLIHTY 170
Cdd:pfam05822  81 AEVVAESDIMLRDGTHEFFDDLQQLNVPVLIFSAGLGDVLEEVLRQANVMHPNVKVVSNFMDFDDDGVLNGFKGPLIHTF 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039738034 171 NKNSSVCENSSYFQQLQNKTNIILLGDSIGDLTMADGVPGVQNILKIGFLNDKVEERRERYMDSYDIVLEKDETLDVVNG 250
Cdd:pfam05822 161 NKNETVLDGTEYFDQLHTRDNIILLGDSLGDLGMADGVPSVEHILKIGFLNDKVEENLDKYMDAFDIVLVDDQTMDVPNA 240

                  ....*.
gi 1039738034 251 LLRHIL 256
Cdd:pfam05822 241 ILEMIL 246
HAD_5NT cd07504
haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to human cytosolic IIIA and IIIB; 5 ...
4-256 8.40e-161

haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to human cytosolic IIIA and IIIB; 5'-nucleotidases dephosphorylate nucleoside 5prime-monophosphates. This family includes human 5'-nucleotidase, cytosolic IIIA (cN-IIIA, previously called cN-III; NT5C3A) the main pyrimidine 5'-nucleotidase in erythrocytes which dephosphorylates the pyrimidine nucleotides CMP, UMP, TMP, and the purine 7-methylguanosine monophosphate (m7GM), and possesses phosphotransferase activity. It also includes human 5'-nucleotidase, cytosolic IIIB (cN-IIIB; NT5C3B) which has a strong preference for m7GMP, dephosphorylates CMP and UMP and, with significantly lower efficiency, GMP and AMP, and can also act as a phosphotransferase. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319807 [Multi-domain]  Cd Length: 273  Bit Score: 447.15  E-value: 8.40e-161
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039738034   4 EVISDFDMTLSRFAYNGQRCPSSHNILDNSKIISEDCRKELTELFHHYYPIEIDPHRTIKEKLPHMVQWWSKAHSLLCQQ 83
Cdd:cd07504    21 QIISDFDMTLSRFRYNGGRCPTCHNIFDNCKLLTEECRAKLVQLKEKYYPIEIDPHLTIEEKVPYMEEWWTKSHELLIEQ 100
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039738034  84 RIQKVQIAQVVGESTAMLREGYKTFFDTLYQNNIPLFIFSAGIGDILEEIIRQMKVFHPNIHIVSNYMDFSEDGFLKGFK 163
Cdd:cd07504   101 GFQKDAIDQIVAESDIALRDGYEEFFEKLQQHGIPVLIFSAGLGDIIEEVLRQAGVYHPNVKVVSNFMDFDDNGVLTGFK 180
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039738034 164 GQLIHTYNKNSSVCENSSYFQQLQNKTNIILLGDSIGDLTMADGVPGVQNILKIGFLNDKVEERRERYMDSYDIVLEKDE 243
Cdd:cd07504   181 GPLIHVFNKNESALKNTDYFKQLKGRTNIILLGDSIGDLRMADGVPNVEHILKIGFLNDKVEELLEKYMDSYDIVLVNDE 260
                         250
                  ....*....|...
gi 1039738034 244 TLDVVNGLLRHIL 256
Cdd:cd07504   261 TLDVPNSILQKIL 273
HAD-SF-IE TIGR01544
haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544; This model represents a ...
4-255 2.24e-118

haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544; This model represents a small group of metazoan sequences. The sequences from mouse are annotated as Pyrimidine 5'-nucleotidases, aparrently in reference to HSPC233, the human homolog. However, no such annotation can currently be found for this gene. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.


Pssm-ID: 273683 [Multi-domain]  Cd Length: 283  Bit Score: 340.29  E-value: 2.24e-118
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039738034   4 EVISDFDMTLSRFAY-NGQRCPSSHNILDNSKIISEDCRKELTELFHHYYPIEIDPHRTIKEKLPHMVQWWSKAHSLLCQ 82
Cdd:TIGR01544  30 QIISDFDYTLSRFRTeDGGRVPTSHGIFDACQSLPEEFKAKTDKLKHKYYPIEIDPHLTIEEKVPYMIEWWTKSHELTVG 109
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039738034  83 QRIQKVQIAQVVGESTAMLREGYKTFFDTLYQNNIPLFIFSAGIGDILEEIIRQMKVFHPNIHIVSNYMDFSEDGFLKGF 162
Cdd:TIGR01544 110 FPFDKSEIDQIVSKSTHALKDGTEEFFADLQRHGIPTLIFSAGIGNSVESVLRQANVLHPNVKVVSNFLQFDEDGLLDGF 189
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039738034 163 KGQLIHTYNKNSSVC-ENSSYFQQLQNKTNIILLGDSIGDLTMADGVPGVQNILKIGFLNDKVEERRERYMDSYDIVLEK 241
Cdd:TIGR01544 190 QQPLIHTFNKNETVLnETTEYFDLVHTRDNIILLGDSIGDADMASGVPASSHILKIGYLNDHVDANLKKYMDTYDIVLVD 269
                         250
                  ....*....|....
gi 1039738034 242 DETLDVVNGLLRHI 255
Cdd:TIGR01544 270 DQTLDVARTILSLI 283
HAD_Pase cd07524
phosphatase, similar to Bacillus subtilis MtnX; belongs to the haloacid dehalogenase-like ...
96-243 1.18e-09

phosphatase, similar to Bacillus subtilis MtnX; belongs to the haloacid dehalogenase-like superfamily; Bacillus subtilis recycles two toxic byproducts of polyamine metabolism, methylthioadenosine and methylthioribose, into methionine by a salvage pathway. The sixth reaction in this pathway is catalyzed by B. subtilis MtnX: the dephosphorylation of 2- hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HKMTP- 1-P) into 1,2-dihydroxy-3-keto-5-methylthiopentene. The hydrolysis of HK-MTP-1-P is a two-step mechanism involving the formation of a transiently phosphorylated aspartyl intermediate. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319826 [Multi-domain]  Cd Length: 211  Bit Score: 56.57  E-value: 1.18e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039738034  96 ESTAMLREGYKTFFDTLYQNNIPLFIFSAGIGDILEEIIRQMKVfhPNIHIVSNYMDFSedgflkgfkGQLIHTYNKNSS 175
Cdd:cd07524    68 EKTAKIRPGFKEFVAFCQEHGIPFIIVSGGMDFFIEPLLEGLVI--EKIAIYCNGSDFS---------GEQIHIDWPHEC 136
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039738034 176 VCEN------SSYFQQLQNKTN-IILLGDSIGDLTMA---DGVpgvqniLKIGFLNDKVEERRERYM---DSYDIVLEKD 242
Cdd:cd07524   137 DCTNgcgcckSSIIRKYSKPRPfIIVIGDSVTDLEAAkeaDLV------FARDGLILKCEEENLPYPpfeTFTDIDIHLQ 210

                  .
gi 1039738034 243 E 243
Cdd:cd07524   211 L 211
mtnX PRK09552
2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
97-248 2.09e-06

2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed


Pssm-ID: 236562  Cd Length: 219  Bit Score: 47.28  E-value: 2.09e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039738034  97 STAMLREGYKTFFDTLYQNNIPLFIFSAGIgD-----ILEEIIrqmkvfhPNIHIVSNYMDFSedgflkgfkGQLIH--- 168
Cdd:PRK09552   71 ETAEIREGFHEFVQFVKENNIPFYVVSGGM-DffvypLLQGLI-------PKEQIYCNGSDFS---------GEYITitw 133
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039738034 169 -----TYNKNSSVCENSSYFQQLQNKTN-IILLGDSIGDLT---MADGVpgvqniLKIGFLNDKVEERRERYM---DSYD 236
Cdd:PRK09552  134 phpcdEHCQNHCGCCKPSLIRKLSDTNDfHIVIGDSITDLEaakQADKV------FARDFLITKCEELGIPYTpfeTFHD 207
                         170
                  ....*....|..
gi 1039738034 237 IVLEKDETLDVV 248
Cdd:PRK09552  208 VQTELKHLLEVK 219
HAD-SF-IB TIGR01488
Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like; This model ...
5-205 1.37e-04

Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like; This model represents a subfamily of the Haloacid Dehalogenase superfamily of aspartate-nucleophile hydrolases. Subfamily IA, B, C and D are distinguished from the rest of the superfamily by the presence of a variable domain between the first and second conserved catalytic motifs. In subfamilies IA and IB, this domain consists of an alpha-helical bundle. It was necessary to model these two subfamilies separately, breaking them at a an apparent phylogenetic bifurcation, so that the resulting model(s) are not so broadly defined that members of subfamily III (which lack the variable domain) are included. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences. [Unknown function, Enzymes of unknown specificity]


Pssm-ID: 273653 [Multi-domain]  Cd Length: 177  Bit Score: 41.57  E-value: 1.37e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039738034   5 VISDFDMTLSRfayngqrcpsshnildnskiisEDCrkeLTELFHHYYPIEIDPH---RTIKEKLPHMVQWWSKAhsLLC 81
Cdd:TIGR01488   2 AIFDFDGTLTR----------------------QDS---LIDLLAKLLGTNDEVIeltRLAPSGRISFEDALGRR--LAL 54
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039738034  82 QQRIQKVQIAQVVGESTAMLREGYKTFFDTLYQNNIPLFIFSAGIGDILEEIIRQMkvfhpNIH-IVSNYMDFSEDGFLK 160
Cdd:TIGR01488  55 LHRSRSEEVAKEFLARQVALRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKL-----GIDdVFANRLEFDDNGLLT 129
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1039738034 161 GFKGQLIHTYNKNsSVCENSSYFQQLQ-NKTNIILLGDSIGDLTMA 205
Cdd:TIGR01488 130 GPIEGQVNPEGEC-KGKVLKELLEESKiTLKKIIAVGDSVNDLPML 174
HAD_like cd01427
Haloacid dehalogenase-like hydrolases; The haloacid dehalogenase-like (HAD) superfamily ...
106-205 2.74e-03

Haloacid dehalogenase-like hydrolases; The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others. This superfamily includes a variety of enzymes that catalyze the cleavage of substrate C-Cl, P-C, and P-OP bonds via nucleophilic substitution pathways. All of which use a nucleophilic aspartate in their phosphoryl transfer reaction. They catalyze nucleophilic substitution reactions at phosphorus or carbon centers, using a conserved Asp carboxylate in covalent catalysis. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319763 [Multi-domain]  Cd Length: 106  Bit Score: 36.60  E-value: 2.74e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039738034 106 KTFFDTLYQNNIPLFIFSAGIGDILEEIIRQMKVFHPNIHIVSnymdfSEDGFlkgfkgqlihtYNKNSSVCENSSYFQQ 185
Cdd:cd01427    13 VELLKRLRAAGIKLAIVTNRSREALRALLEKLGLGDLFDGIIG-----SDGGG-----------TPKPKPKPLLLLLLKL 76
                          90       100
                  ....*....|....*....|
gi 1039738034 186 LQNKTNIILLGDSIGDLTMA 205
Cdd:cd01427    77 GVDPEEVLFVGDSENDIEAA 96
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH