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Conserved domains on  [gi|1034598112|ref|XP_016879649|]
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ubiquitin carboxyl-terminal hydrolase 43 isoform X4 [Homo sapiens]

Protein Classification

ubiquitin carboxyl-terminal hydrolase family protein( domain architecture ID 10119344)

ubiquitin carboxyl-terminal hydrolase family protein is a C19 family peptidase that may deubiquitinate polyubiquitinated target proteins

CATH:  3.90.70.10
EC:  3.4.19.12
Gene Ontology:  GO:0016579|GO:0004843
MEROPS:  C19
PubMed:  7845226|11517925
SCOP:  4003158

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
229-397 2.31e-66

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


:

Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 220.24  E-value: 2.31e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598112 229 CTLDECFQFYTKEEQLAQDDAWKCPHCQVLQQGMVKLSLWTLPDILIIHLKRFCQVGERRNKLSTLVKFPLSGLNMAPHv 308
Cdd:cd02674    84 VTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSRGSTRKLTTPVTFPLNDLDLTPY- 162
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598112 309 aqrstspeaglgpwpswkqpdCLPTSYPLDFLYDLYAVCNHHGNLQGGHYTAYCRNSLDGQWYSYDDSTVEPLREDEVNT 388
Cdd:cd02674   163 ---------------------VDTRSFTGPFKYDLYAVVNHYGSLNGGHYTAYCKNNETNDWYKFDDSRVTKVSESSVVS 221

                  ....*....
gi 1034598112 389 RGAYILFYQ 397
Cdd:cd02674   222 SSAYILFYE 230
 
Name Accession Description Interval E-value
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
229-397 2.31e-66

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 220.24  E-value: 2.31e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598112 229 CTLDECFQFYTKEEQLAQDDAWKCPHCQVLQQGMVKLSLWTLPDILIIHLKRFCQVGERRNKLSTLVKFPLSGLNMAPHv 308
Cdd:cd02674    84 VTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSRGSTRKLTTPVTFPLNDLDLTPY- 162
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598112 309 aqrstspeaglgpwpswkqpdCLPTSYPLDFLYDLYAVCNHHGNLQGGHYTAYCRNSLDGQWYSYDDSTVEPLREDEVNT 388
Cdd:cd02674   163 ---------------------VDTRSFTGPFKYDLYAVVNHYGSLNGGHYTAYCKNNETNDWYKFDDSRVTKVSESSVVS 221

                  ....*....
gi 1034598112 389 RGAYILFYQ 397
Cdd:cd02674   222 SSAYILFYE 230
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
231-396 5.86e-42

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 155.68  E-value: 5.86e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598112 231 LDECFQFYTKEEQLAQDDAWKCPHCQVLQQGMVKLSLWTLPDILIIHLKRFCQVGERRNKLSTLVKFPLSgLNMAPHVAq 310
Cdd:pfam00443 164 LQICFLQFSKLEELDDEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSYNRSTWEKLNTEVEFPLE-LDLSRYLA- 241
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598112 311 rstsPEAGLGPWPSWKqpdclptsypldflYDLYAVCNHHGNLQGGHYTAYCRNSLDGQWYSYDDSTVEPLRED-EVNTR 389
Cdd:pfam00443 242 ----EELKPKTNNLQD--------------YRLVAVVVHSGSLSSGHYIAYIKAYENNRWYKFDDEKVTEVDEEtAVLSS 303

                  ....*..
gi 1034598112 390 GAYILFY 396
Cdd:pfam00443 304 SAYILFY 310
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
195-400 3.24e-39

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 156.20  E-value: 3.24e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598112 195 DSSVKERLFGSLQEERAQDADSVWQQQQ-AHQQHSCTLDECFQFYTKEEQLAQDDAWKCPHCQVLQQGMVKLSLWTLPDI 273
Cdd:COG5560   640 DAVVISCEWEEKRYLSLFSYDPLWTIREiGAAERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMI 719
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598112 274 LIIHLKRFCQVGERRNKLSTLVKFPLSGLNMAPHVaqrstspeaglGPWPSWKqpdclptsypldFLYDLYAVCNHHGNL 353
Cdd:COG5560   720 LIIHLKRFSSVRSFRDKIDDLVEYPIDDLDLSGVE-----------YMVDDPR------------LIYDLYAVDNHYGGL 776
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1034598112 354 QGGHYTAYCRNSLDGQWYSYDDSTVEPLREDEVNTRGAYILFYQKRN 400
Cdd:COG5560   777 SGGHYTAYARNFANNGWYLFDDSRITEVDPEDSVTSSAYVLFYRRKS 823
 
Name Accession Description Interval E-value
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
229-397 2.31e-66

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 220.24  E-value: 2.31e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598112 229 CTLDECFQFYTKEEQLAQDDAWKCPHCQVLQQGMVKLSLWTLPDILIIHLKRFCQVGERRNKLSTLVKFPLSGLNMAPHv 308
Cdd:cd02674    84 VTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSRGSTRKLTTPVTFPLNDLDLTPY- 162
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598112 309 aqrstspeaglgpwpswkqpdCLPTSYPLDFLYDLYAVCNHHGNLQGGHYTAYCRNSLDGQWYSYDDSTVEPLREDEVNT 388
Cdd:cd02674   163 ---------------------VDTRSFTGPFKYDLYAVVNHYGSLNGGHYTAYCKNNETNDWYKFDDSRVTKVSESSVVS 221

                  ....*....
gi 1034598112 389 RGAYILFYQ 397
Cdd:cd02674   222 SSAYILFYE 230
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
231-396 5.86e-42

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 155.68  E-value: 5.86e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598112 231 LDECFQFYTKEEQLAQDDAWKCPHCQVLQQGMVKLSLWTLPDILIIHLKRFCQVGERRNKLSTLVKFPLSgLNMAPHVAq 310
Cdd:pfam00443 164 LQICFLQFSKLEELDDEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSYNRSTWEKLNTEVEFPLE-LDLSRYLA- 241
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598112 311 rstsPEAGLGPWPSWKqpdclptsypldflYDLYAVCNHHGNLQGGHYTAYCRNSLDGQWYSYDDSTVEPLRED-EVNTR 389
Cdd:pfam00443 242 ----EELKPKTNNLQD--------------YRLVAVVVHSGSLSSGHYIAYIKAYENNRWYKFDDEKVTEVDEEtAVLSS 303

                  ....*..
gi 1034598112 390 GAYILFY 396
Cdd:pfam00443 304 SAYILFY 310
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
229-397 8.98e-40

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 147.63  E-value: 8.98e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598112 229 CTLDECFQFYTKEEQLAQDDAWKCPHCQvLQQGMVKLSLWTLPDILIIHLKRFCQVGE-RRNKLSTLVKFPLSgLNMAPH 307
Cdd:cd02257    99 VSLEDCLEKFFKEEILEGDNCYKCEKKK-KQEATKRLKIKKLPPVLIIHLKRFSFNEDgTKEKLNTKVSFPLE-LDLSPY 176
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598112 308 VAQRSTSPEAGLGPwpswkqpdclptsypldFLYDLYAVCNHHG-NLQGGHYTAYCRNSLDGQWYSYDDSTVEPLREDEV 386
Cdd:cd02257   177 LSEGEKDSDSDNGS-----------------YKYELVAVVVHSGtSADSGHYVAYVKDPSDGKWYKFNDDKVTEVSEEEV 239
                         170
                  ....*....|....*.
gi 1034598112 387 NTRG-----AYILFYQ 397
Cdd:cd02257   240 LEFGslsssAYILFYE 255
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
195-400 3.24e-39

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 156.20  E-value: 3.24e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598112 195 DSSVKERLFGSLQEERAQDADSVWQQQQ-AHQQHSCTLDECFQFYTKEEQLAQDDAWKCPHCQVLQQGMVKLSLWTLPDI 273
Cdd:COG5560   640 DAVVISCEWEEKRYLSLFSYDPLWTIREiGAAERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMI 719
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598112 274 LIIHLKRFCQVGERRNKLSTLVKFPLSGLNMAPHVaqrstspeaglGPWPSWKqpdclptsypldFLYDLYAVCNHHGNL 353
Cdd:COG5560   720 LIIHLKRFSSVRSFRDKIDDLVEYPIDDLDLSGVE-----------YMVDDPR------------LIYDLYAVDNHYGGL 776
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1034598112 354 QGGHYTAYCRNSLDGQWYSYDDSTVEPLREDEVNTRGAYILFYQKRN 400
Cdd:COG5560   777 SGGHYTAYARNFANNGWYLFDDSRITEVDPEDSVTSSAYVLFYRRKS 823
Peptidase_C19D cd02660
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
230-396 2.81e-35

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239125 [Multi-domain]  Cd Length: 328  Bit Score: 136.73  E-value: 2.81e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598112 230 TLDECFQFYTKEEQLaQDDAWKCPHCQVLQQGMVKLSLWTLPDILIIHLKRFCQ-VGERRNKLSTLVKFPLSgLNMAPHv 308
Cdd:cd02660   177 TLSDCLDRFTRPEKL-GDFAYKCSGCGSTQEATKQLSIKKLPPVLCFQLKRFEHsLNKTSRKIDTYVQFPLE-LNMTPY- 253
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598112 309 aqrsTSPEAGlgpwpsWKQPDCLPTSyplDFLYDLYAVCNHHGNLQGGHYTAYCRNSlDGQWYSYDDSTVEPLREDEVNT 388
Cdd:cd02660   254 ----TSSSIG------DTQDSNSLDP---DYTYDLFAVVVHKGTLDTGHYTAYCRQG-DGQWFKFDDAMITRVSEEEVLK 319

                  ....*...
gi 1034598112 389 RGAYILFY 396
Cdd:cd02660   320 SQAYLLFY 327
Peptidase_C19E cd02661
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
230-396 2.08e-28

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239126 [Multi-domain]  Cd Length: 304  Bit Score: 116.22  E-value: 2.08e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598112 230 TLDECFQFYTKEEQLAQDDAWKCPHCQvlqqGMVK----LSLWTLPDILIIHLKRFcqVGERRNKLSTLVKFPLSgLNMA 305
Cdd:cd02661   163 SLEDALEQFTKPEQLDGENKYKCERCK----KKVKaskqLTIHRAPNVLTIHLKRF--SNFRGGKINKQISFPET-LDLS 235
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598112 306 PHVAQRSTSPeaglgpwpswkqpdclptsypldFLYDLYAVCNHHG-NLQGGHYTAYCRNSlDGQWYSYDDSTVEPLRED 384
Cdd:cd02661   236 PYMSQPNDGP-----------------------LKYKLYAVLVHSGfSPHSGHYYCYVKSS-NGKWYNMDDSKVSPVSIE 291
                         170
                  ....*....|..
gi 1034598112 385 EVNTRGAYILFY 396
Cdd:cd02661   292 TVLSQKAYILFY 303
peptidase_C19C cd02659
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
231-400 7.94e-24

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239124 [Multi-domain]  Cd Length: 334  Bit Score: 103.49  E-value: 7.94e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598112 231 LDECFQFYTKEEQLAQDDAWKCPHCQvLQQGMVK-LSLWTLPDILIIHLKRF--CQVGERRNKLSTLVKFPLSgLNMAPH 307
Cdd:cd02659   153 LEESLDAYVQGETLEGDNKYFCEKCG-KKVDAEKgVCFKKLPPVLTLQLKRFefDFETMMRIKINDRFEFPLE-LDMEPY 230
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598112 308 VaqrstspEAGLGPWPSWKQPDClptsyPLDFLYDLYAVCNHHGNLQGGHYTAYCRNSLDGQWYSYDDSTVEPLREDEV- 386
Cdd:cd02659   231 T-------EKGLAKKEGDSEKKD-----SESYIYELHGVLVHSGDAHGGHYYSYIKDRDDGKWYKFNDDVVTPFDPNDAe 298
                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1034598112 387 -------NTRG--------------AYILFYQKRN 400
Cdd:cd02659   299 eecfggeETQKtydsgprafkrttnAYMLFYERKS 333
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
229-397 1.58e-20

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 92.45  E-value: 1.58e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598112 229 CTLDECFQFYTKEEQLAQDDAWkcpHCQVLQQGMVKLSLWTLPDILIIHLKRFCQVGERR-NKLSTLVKFPlSGLNMAPH 307
Cdd:cd02667   111 CSIESCLKQFTEVEILEGNNKF---ACENCTKAKKQYLISKLPPVLVIHLKRFQQPRSANlRKVSRHVSFP-EILDLAPF 186
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598112 308 VAQRSTSPEAGLgpwpswkqpdclptsyplDFLYDLYAVCNHHGNLQGGHYTAYCR------------NSLD-------- 367
Cdd:cd02667   187 CDPKCNSSEDKS------------------SVLYRLYGVVEHSGTMRSGHYVAYVKvrppqqrlsdltKSKPaadeagpg 248
                         170       180       190
                  ....*....|....*....|....*....|.
gi 1034598112 368 -GQWYSYDDSTVEPLREDEVNTRGAYILFYQ 397
Cdd:cd02667   249 sGQWYYISDSDVREVSLEEVLKSEAYLLFYE 279
Peptidase_C19L cd02668
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
230-396 1.76e-19

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239133 [Multi-domain]  Cd Length: 324  Bit Score: 90.17  E-value: 1.76e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598112 230 TLDECFQFYTKEEQLAQDDAWKCPHCQVLQQGMVKLSLWTLPDILIIHLKRFC---QVGERRnKLSTLVKFPLSgLNMAP 306
Cdd:cd02668   157 TLEECIDEFLKEEQLTGDNQYFCESCNSKTDATRRIRLTTLPPTLNFQLLRFVfdrKTGAKK-KLNASISFPEI-LDMGE 234
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598112 307 HVAQRStspeaglgpwpswkqpdclptsyPLDFLYDLYAVCNHHGN-LQGGHYTAYCRNSLDGQWYSYDDSTVEPL---- 381
Cdd:cd02668   235 YLAESD-----------------------EGSYVYELSGVLIHQGVsAYSGHYIAHIKDEQTGEWYKFNDEDVEEMpgkp 291
                         170       180       190
                  ....*....|....*....|....*....|..
gi 1034598112 382 ------------REDEVN-----TRGAYILFY 396
Cdd:cd02668   292 lklgnsedpakpRKSEIKkgthsSRTAYMLVY 323
Peptidase_C19G cd02663
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
228-397 1.85e-19

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239128 [Multi-domain]  Cd Length: 300  Bit Score: 89.68  E-value: 1.85e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598112 228 SCTLDECFQFYTKEEQLAQDDAWKCPHCQVLQQGMVKLSLWTLPDILIIHLKRFCQVG--ERRNKLSTLVKFPLSgLNMA 305
Cdd:cd02663   146 NTSITSCLRQFSATETLCGRNKFYCDECCSLQEAEKRMKIKKLPKILALHLKRFKYDEqlNRYIKLFYRVVFPLE-LRLF 224
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598112 306 phvaqrSTSPEAglgpwpswkqpdclptSYPlDFLYDLYAVCNHHGN-LQGGHYTAYCRNslDGQWYSYDDSTVEPLRED 384
Cdd:cd02663   225 ------NTTDDA----------------ENP-DRLYELVAVVVHIGGgPNHGHYVSIVKS--HGGWLLFDDETVEKIDEN 279
                         170       180
                  ....*....|....*....|.
gi 1034598112 385 EV--------NTRGAYILFYQ 397
Cdd:cd02663   280 AVeeffgdspNQATAYVLFYQ 300
COG5533 COG5533
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
244-398 2.39e-13

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444284 [Multi-domain]  Cd Length: 284  Bit Score: 71.37  E-value: 2.39e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598112 244 LAQDDAWKcphcqVLQQGMVKLSLWTLPDILIIHLKRFCQVGERRnKLSTLVKFPLsglNMaphvaqrSTSPEAGLGPWP 323
Cdd:COG5533   158 AKENEELE-----VQAKQEYEVSFVKLPKILTIQLKRFANLGGNQ-KIDTEVDEKF---EL-------PVKHDQILNIVK 221
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1034598112 324 SwkqpdclptsypldFLYDLYAVCNHHGNLQGGHYTAYCRNslDGQWYSYDDSTVEPLREDE---VNTRGAYILFYQK 398
Cdd:COG5533   222 E--------------TYYDLVGFVLHQGSLEGGHYIAYVKK--GGKWEKANDSDVTPVSEEEainEKAKNAYLYFYER 283
Peptidase_C19F cd02662
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
228-397 5.89e-12

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239127 [Multi-domain]  Cd Length: 240  Bit Score: 66.24  E-value: 5.89e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598112 228 SCTLDECFQFYTKEEQLaqDDAwKCPHCQvlqQGMVKLslwtlPDILIIHLKRFC---QVGERRNklSTLVKFPlsglnm 304
Cdd:cd02662    95 GTTLEHCLDDFLSTEII--DDY-KCDRCQ---TVIVRL-----PQILCIHLSRSVfdgRGTSTKN--SCKVSFP------ 155
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598112 305 aphvaqrstspeaglgpwpswkqpDCLPtsyplDFLYDLYAVCNHHGNLQGGHYTAYCRNSL------------------ 366
Cdd:cd02662   156 ------------------------ERLP-----KVLYRLRAVVVHYGSHSSGHYVCYRRKPLfskdkepgsfvrmregps 206
                         170       180       190
                  ....*....|....*....|....*....|....
gi 1034598112 367 --DGQWYSYDDSTVEPLREDEV-NTRGAYILFYQ 397
Cdd:cd02662   207 stSHPWWRISDTTVKEVSESEVlEQKSAYMLFYE 240
COG5077 COG5077
Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, ...
230-386 1.15e-11

Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227409 [Multi-domain]  Cd Length: 1089  Bit Score: 68.74  E-value: 1.15e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598112  230 TLDECFQFYTKEEQLAQDDAWKCPH--CQVLQQGMVKLSLwtlPDILIIHLKRFCQVGERRN--KLSTLVKFPLSgLNMA 305
Cdd:COG5077    339 NLQESFRRYIQVETLDGDNRYNAEKhgLQDAKKGVIFESL---PPVLHLQLKRFEYDFERDMmvKINDRYEFPLE-IDLL 414
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598112  306 PHVAQRSTSPEAGlgpwpswkqpdclptsyplDFLYDLYAVCNHHGNLQGGHYTAYCRNSLDGQWYSYDDSTVEPLREDE 385
Cdd:COG5077    415 PFLDRDADKSENS-------------------DAVYVLYGVLVHSGDLHEGHYYALLKPEKDGRWYKFDDTRVTRATEKE 475

                   .
gi 1034598112  386 V 386
Cdd:COG5077    476 V 476
Peptidase_C19M cd02669
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
253-397 1.01e-09

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239134 [Multi-domain]  Cd Length: 440  Bit Score: 61.57  E-value: 1.01e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598112 253 PHCQVLQQGMVKLSLWTLPDILIIHLKRFCQ---VGErRNKlsTLVKFPLSGLNMAPHVaqrstspeaglgpwPSWKQPD 329
Cdd:cd02669   315 KTETELKDSLKRYLISRLPKYLIFHIKRFSKnnfFKE-KNP--TIVNFPIKNLDLSDYV--------------HFDKPSL 377
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1034598112 330 CLPTSypldflYDLYAVCNHHGNLQG-GHYTAYCRNSLDGQWYSYDDSTVEPLREDEVNTRGAYILFYQ 397
Cdd:cd02669   378 NLSTK------YNLVANIVHEGTPQEdGTWRVQLRHKSTNKWFEIQDLNVKEVLPQLIFLSESYIQIWE 440
Peptidase_C19O cd02671
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
236-396 2.13e-08

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239136 [Multi-domain]  Cd Length: 332  Bit Score: 56.83  E-value: 2.13e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598112 236 QFYTkEEQLAQDDAWKCPHCQVLQQGMVKLSLWTLPDILIIHLKRFCQVGERRN------KLSTLVKFPLSglnmaPHVA 309
Cdd:cd02671   188 QFAS-VERIVGEDKYFCENCHHYTEAERSLLFDKLPEVITIHLKCFAANGSEFDcygglsKVNTPLLTPLK-----LSLE 261
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598112 310 QRSTSPeaglgpwpswKQPDclptsypldflYDLYAVCNHHG-NLQGGHYTAYCRnsldgqWYSYDDSTVEPLREDEV-- 386
Cdd:cd02671   262 EWSTKP----------KNDV-----------YRLFAVVMHSGaTISSGHYTAYVR------WLLFDDSEVKVTEEKDFle 314
                         170
                  ....*....|....*..
gi 1034598112 387 -------NTRGAYILFY 396
Cdd:cd02671   315 alspntsSTSTPYLLFY 331
Peptidase_C19A cd02657
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
330-396 3.72e-08

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239122 [Multi-domain]  Cd Length: 305  Bit Score: 55.80  E-value: 3.72e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1034598112 330 CLPTSYpldflYDLYAVCNHHG-NLQGGHYTAYCRNSLDGQWYSYDDSTVEPLREDEVNT-RG------AYILFY 396
Cdd:cd02657   235 CTPSGY-----YELVAVITHQGrSADSGHYVAWVRRKNDGKWIKFDDDKVSEVTEEDILKlSGggdwhiAYILLY 304
Peptidase_C19H cd02664
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
229-397 7.59e-07

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239129 [Multi-domain]  Cd Length: 327  Bit Score: 52.11  E-value: 7.59e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598112 229 CTLDECFQFYTKEEQLAQDDAWKCPHCQVLQQGMVKLSLWTLPDILIIHLKRFCQVGER--RNKLSTLVKFPLSgLNMAP 306
Cdd:cd02664   134 PSVQDLLNYFLSPEKLTGDNQYYCEKCASLQDAEKEMKVTGAPEYLILTLLRFSYDQKThvREKIMDNVSINEV-LSLPV 212
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598112 307 HVAQRSTSPEAGLGPWPSWKQPDCLPTSYPldflYDLYAVCNHHG-NLQGGHYTAYCRNS-------------------- 365
Cdd:cd02664   213 RVESKSSESPLEKKEEESGDDGELVTRQVH----YRLYAVVVHSGySSESGHYFTYARDQtdadstgqecpepkdaeend 288
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1034598112 366 LDGQWYSYDDSTVEPLREDEV---------NTrgAYILFYQ 397
Cdd:cd02664   289 ESKNWYLFNDSRVTFSSFESVqnvtsrfpkDT--PYILFYE 327
Peptidase_C19N cd02670
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
256-397 1.23e-06

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239135 [Multi-domain]  Cd Length: 241  Bit Score: 50.60  E-value: 1.23e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598112 256 QVLQQGMVKLSLWTLPDILIIHLKRFCQVGERRNKLSTLVkFPLSGLNMAPHVA-QRSTSPEAGLGPWPSWKQPDCLPTS 334
Cdd:cd02670    84 QCLEQYFNNSVFAKAPSCLIICLKRYGKTEGKAQKMFKKI-LIPDEIDIPDFVAdDPRACSKCQLECRVCYDDKDFSPTC 162
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598112 335 YPLdFLYDLYAVCNHHGNLQGGHYTAYCRNS-----------LDGQWYSYDDSTVEPLREDEVNTRG------AYILFYQ 397
Cdd:cd02670   163 GKF-KLSLCSAVCHRGTSLETGHYVAFVRYGsysltetdneaYNAQWVFFDDMADRDGVSNGFNIPAarlledPYMLFYQ 241
Peptidase_C19P cd02672
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
249-397 3.61e-04

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239137 [Multi-domain]  Cd Length: 268  Bit Score: 43.27  E-value: 3.61e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598112 249 AWKCpHCQVLQQGMVKLSLWTLPDILIIHLKRFCQVGERRNKLSTLVKFplSGLNMAPHVaqrstSPEAGLGPWPSwkqp 328
Cdd:cd02672   135 AWCD-TCCKYQPLEQTTSIRHLPDILLLVLVINLSVTNGEFDDINVVLP--SGKVMQNKV-----SPKAIDHDKLV---- 202
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1034598112 329 dcLPTSYPLDFLYDLYA-VCNHHGNLQGGHYTA----YCRNSLDGQWYSYDDSTVEPLREDevntrgAYILFYQ 397
Cdd:cd02672   203 --KNRGQESIYKYELVGyVCEINDSSRGQHNVVfvikVNEESTHGRWYLFNDFLVTPVSEL------AYILLYQ 268
Peptidase_C19Q cd02673
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
341-396 4.20e-04

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239138 [Multi-domain]  Cd Length: 245  Bit Score: 42.90  E-value: 4.20e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1034598112 341 YDLYAVCNHHG-NLQGGHYTAYCRNSLDG-QWYSYDDSTVEPLREDEVN---TRGAYILFY 396
Cdd:cd02673   184 YSLVAVICHLGeSPYDGHYIAYTKELYNGsSWLYCSDDEIRPVSKNDVStnaRSSGYLIFY 244
Peptidase_C19J cd02666
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
338-396 1.93e-03

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239131 [Multi-domain]  Cd Length: 343  Bit Score: 41.32  E-value: 1.93e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1034598112 338 DFLYDLYAVCNHHGNLQGGHYTAYCRNSLDGQWYSYDDSTVEPLREDEV------NTRGAYILFY 396
Cdd:cd02666   278 SYGYRLHAVFIHRGEASSGHYWVYIKDFEENVWRKYNDETVTVVPASEVflftlgNTATPYFLVY 342
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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