|
Name |
Accession |
Description |
Interval |
E-value |
| NACHT |
pfam05729 |
NACHT domain; This NTPase domain is found in apoptosis proteins as well as those involved in ... |
71-241 |
4.05e-44 |
|
NACHT domain; This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931. :
Pssm-ID: 428606 [Multi-domain] Cd Length: 166 Bit Score: 156.70 E-value: 4.05e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595528 71 DTVLVVGEAGSGKSTLLQRLHLLWAAGQDFQEFLFVFPFSCRQLQCMAKPLSVRTLLFEHCCWPDVGQEDIFQLLLDHPD 150
Cdd:pfam05729 1 RTVILQGEAGSGKTTLLQKLALLWAQGKLPQGFDFVFFLPCRELSRSGNARSLADLLFSQWPEPAAPVSEVWAVILELPE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595528 151 RVLLTFDGFDEFKFRFtdrerhCSPTDPTSVQTLLFNLLQGNLLKNARKVVTSRPAAVSAfLRKYIRTE--FNLKGFSEQ 228
Cdd:pfam05729 81 RLLLILDGLDELVSDL------GQLDGPCPVLTLLSSLLRKKLLPGASLLLTVRPDALRD-LRRGLEEPryLEVRGFSES 153
|
170
....*....|...
gi 1034595528 229 GIELYLRKRHHEP 241
Cdd:pfam05729 154 DRKQYVRKYFSDE 166
|
|
| RNA1 super family |
cl34950 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
535-809 |
1.86e-42 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis]; The actual alignment was detected with superfamily member COG5238:
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 160.34 E-value: 1.86e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595528 535 KAARGLNVGHLKLTFCSVGPTECAALAFVLQHLRRPVaLQLDYNSVGDIGVEQLLPCLGVCKA---LYLRDNNISDRGIC 611
Cdd:COG5238 148 KDPLGGNAVHLLGLAARLGLLAAISMAKALQNNSVET-VYLGCNQIGDEGIEELAEALTQNTTvttLWLKRNPIGDEGAE 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595528 612 KLIECALHCEQLQKLALFNNKLTDGCAHSMAKLLACRQNFLALRLGNNYITAAGAQVLAEGLRGNTSLQFLGFWGNRVGD 691
Cdd:COG5238 227 ILAEALKGNKSLTTLDLSNNQIGDEGVIALAEALKNNTTVETLYLSGNQIGAEGAIALAKALQGNTTLTSLDLSVNRIGD 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595528 692 EGAQALAEALGDHQSLRWLSLVGNNIGSVGAQALALMLAKNVMLEELCLEENHLQDEGVCSLAEGLKKNSSLKILKLSNN 771
Cdd:COG5238 307 EGAIALAEGLQGNKTLHTLNLAYNGIGAQGAIALAKALQENTTLHSLDLSDNQIGDEGAIALAKYLEGNTTLRELNLGKN 386
|
250 260 270
....*....|....*....|....*....|....*...
gi 1034595528 772 CITYLGAEALLQALERNdTILEVWLRGNTFSLEEVDKL 809
Cdd:COG5238 387 NIGKQGAEALIDALQTN-RLHTLILDGNLIGAEAQQRL 423
|
|
| NACHT |
COG5635 |
Predicted NTPase, NACHT family domain [Signal transduction mechanisms]; |
66-409 |
1.40e-21 |
|
Predicted NTPase, NACHT family domain [Signal transduction mechanisms]; :
Pssm-ID: 444362 [Multi-domain] Cd Length: 935 Bit Score: 100.65 E-value: 1.40e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595528 66 LNDDADTVLVVGEAGSGKSTLLQRL-HLLWAAGQDFQEFLFVFpFSCRQLqcmAKPLSVRTLLFEHCCWPDVGQEDIFQL 144
Cdd:COG5635 176 LEAKKKRLLILGEPGSGKTTLLRYLaLELAERYLDAEDPIPIL-IELRDL---AEEASLEDLLAEALEKRGGEPEDALER 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595528 145 LLDHpDRVLLTFDGFDEFKFRfTDRERhcsptdptsVQTLLFNLLQGnlLKNARKVVTSRPAAV-SAFLRKYirTEFNLK 223
Cdd:COG5635 252 LLRN-GRLLLLLDGLDEVPDE-ADRDE---------VLNQLRRFLER--YPKARVIITSRPEGYdSSELEGF--EVLELA 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595528 224 GFSEQGIELYLRKRH-HEPGVADRLIRLLQETSALHGLCHLPVFSWMVSkchqeLLLQEGGS-PKTTTDMYLLILQHFLl 301
Cdd:COG5635 317 PLSDEQIEEFLKKWFeATERKAERLLEALEENPELRELARNPLLLTLLA-----LLLRERGElPDTRAELYEQFVELLL- 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595528 302 hATPPDSASQGLGPSLLRGRLPTLlhLGRLALWGLGMCCYVFSAQQLQ-------AAQVSPDDI------SLGFLV-RAK 367
Cdd:COG5635 391 -ERWDEQRGLTIYRELSREELREL--LSELALAMQENGRTEFAREELEeilreylGRRKDAEALldelllRTGLLVeRGE 467
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 1034595528 368 GVVpgstaplEFLHITFQCFFAAFYLA--LSADVPPALLRHLFN 409
Cdd:COG5635 468 GRY-------SFAHRSFQEYLAARALVeeLDEELLELLAEHLED 504
|
|
| NLRC4_HD2 super family |
cl39284 |
NLRC4 helical domain HD2; This entry represents a helical domain found in the NLRC4 protein ... |
381-535 |
3.45e-14 |
|
NLRC4 helical domain HD2; This entry represents a helical domain found in the NLRC4 protein and NOD2 protein. The actual alignment was detected with superfamily member pfam17776:
Pssm-ID: 465499 [Multi-domain] Cd Length: 122 Bit Score: 69.63 E-value: 3.45e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595528 381 HITFQCFFAAFYLALSADV-PPALLRHLFNCGRpgnspmarllptmciqaSEGKDSSVAALLQKAEPHnLQITAAFLAGL 459
Cdd:pfam17776 1 HLSFQEFFAALFYVLSFKEeKSNPLKEFFGLRK-----------------RESLKSLLDKALKSKNGH-LDLFLRFLFGL 62
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1034595528 460 LSREHWGLLAECQTSEKALLRRQAcARWCLARSLRKHFHSippaapgeaksvhamPGFIWLIRSLYEMQEERLARK 535
Cdd:pfam17776 63 LNEENQRLLEGLLGCKLSSEIKQE-LLQWIKSLIQKELSS---------------ERFLNLFHCLYELQDESFVKE 122
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| NACHT |
pfam05729 |
NACHT domain; This NTPase domain is found in apoptosis proteins as well as those involved in ... |
71-241 |
4.05e-44 |
|
NACHT domain; This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.
Pssm-ID: 428606 [Multi-domain] Cd Length: 166 Bit Score: 156.70 E-value: 4.05e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595528 71 DTVLVVGEAGSGKSTLLQRLHLLWAAGQDFQEFLFVFPFSCRQLQCMAKPLSVRTLLFEHCCWPDVGQEDIFQLLLDHPD 150
Cdd:pfam05729 1 RTVILQGEAGSGKTTLLQKLALLWAQGKLPQGFDFVFFLPCRELSRSGNARSLADLLFSQWPEPAAPVSEVWAVILELPE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595528 151 RVLLTFDGFDEFKFRFtdrerhCSPTDPTSVQTLLFNLLQGNLLKNARKVVTSRPAAVSAfLRKYIRTE--FNLKGFSEQ 228
Cdd:pfam05729 81 RLLLILDGLDELVSDL------GQLDGPCPVLTLLSSLLRKKLLPGASLLLTVRPDALRD-LRRGLEEPryLEVRGFSES 153
|
170
....*....|...
gi 1034595528 229 GIELYLRKRHHEP 241
Cdd:pfam05729 154 DRKQYVRKYFSDE 166
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
535-809 |
1.86e-42 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 160.34 E-value: 1.86e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595528 535 KAARGLNVGHLKLTFCSVGPTECAALAFVLQHLRRPVaLQLDYNSVGDIGVEQLLPCLGVCKA---LYLRDNNISDRGIC 611
Cdd:COG5238 148 KDPLGGNAVHLLGLAARLGLLAAISMAKALQNNSVET-VYLGCNQIGDEGIEELAEALTQNTTvttLWLKRNPIGDEGAE 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595528 612 KLIECALHCEQLQKLALFNNKLTDGCAHSMAKLLACRQNFLALRLGNNYITAAGAQVLAEGLRGNTSLQFLGFWGNRVGD 691
Cdd:COG5238 227 ILAEALKGNKSLTTLDLSNNQIGDEGVIALAEALKNNTTVETLYLSGNQIGAEGAIALAKALQGNTTLTSLDLSVNRIGD 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595528 692 EGAQALAEALGDHQSLRWLSLVGNNIGSVGAQALALMLAKNVMLEELCLEENHLQDEGVCSLAEGLKKNSSLKILKLSNN 771
Cdd:COG5238 307 EGAIALAEGLQGNKTLHTLNLAYNGIGAQGAIALAKALQENTTLHSLDLSDNQIGDEGAIALAKYLEGNTTLRELNLGKN 386
|
250 260 270
....*....|....*....|....*....|....*...
gi 1034595528 772 CITYLGAEALLQALERNdTILEVWLRGNTFSLEEVDKL 809
Cdd:COG5238 387 NIGKQGAEALIDALQTN-RLHTLILDGNLIGAEAQQRL 423
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
545-810 |
3.21e-30 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 122.08 E-value: 3.21e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595528 545 LKLTFCSVGPTECAALAFVLQHLRRPVALQLDYNSVGDI--GVEQLLPCLGVCKAL---YLRDNNISDRGiCKLIECALH 619
Cdd:cd00116 28 LRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIprGLQSLLQGLTKGCGLqelDLSDNALGPDG-CGVLESLLR 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595528 620 CEQLQKLALFNNKLTD-GCAHSMAKLLACRQNFLALRLGNNYITAAGAQVLAEGLRGNTSLQFLGFWGNRVGDEGAQALA 698
Cdd:cd00116 107 SSSLQELKLNNNGLGDrGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALA 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595528 699 EALGDHQSLRWLSLVGNNIGSVGAQALALMLAKNVMLEELCLEENHLQDEGVCSLAEGLKK-NSSLKILKLSNNCITYLG 777
Cdd:cd00116 187 EGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSpNISLLTLSLSCNDITDDG 266
|
250 260 270
....*....|....*....|....*....|...
gi 1034595528 778 AEALLQALERNDTILEVWLRGNTFSLEEVDKLG 810
Cdd:cd00116 267 AKDLAEVLAEKESLLELDLRGNKFGEEGAQLLA 299
|
|
| NACHT |
COG5635 |
Predicted NTPase, NACHT family domain [Signal transduction mechanisms]; |
66-409 |
1.40e-21 |
|
Predicted NTPase, NACHT family domain [Signal transduction mechanisms];
Pssm-ID: 444362 [Multi-domain] Cd Length: 935 Bit Score: 100.65 E-value: 1.40e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595528 66 LNDDADTVLVVGEAGSGKSTLLQRL-HLLWAAGQDFQEFLFVFpFSCRQLqcmAKPLSVRTLLFEHCCWPDVGQEDIFQL 144
Cdd:COG5635 176 LEAKKKRLLILGEPGSGKTTLLRYLaLELAERYLDAEDPIPIL-IELRDL---AEEASLEDLLAEALEKRGGEPEDALER 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595528 145 LLDHpDRVLLTFDGFDEFKFRfTDRERhcsptdptsVQTLLFNLLQGnlLKNARKVVTSRPAAV-SAFLRKYirTEFNLK 223
Cdd:COG5635 252 LLRN-GRLLLLLDGLDEVPDE-ADRDE---------VLNQLRRFLER--YPKARVIITSRPEGYdSSELEGF--EVLELA 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595528 224 GFSEQGIELYLRKRH-HEPGVADRLIRLLQETSALHGLCHLPVFSWMVSkchqeLLLQEGGS-PKTTTDMYLLILQHFLl 301
Cdd:COG5635 317 PLSDEQIEEFLKKWFeATERKAERLLEALEENPELRELARNPLLLTLLA-----LLLRERGElPDTRAELYEQFVELLL- 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595528 302 hATPPDSASQGLGPSLLRGRLPTLlhLGRLALWGLGMCCYVFSAQQLQ-------AAQVSPDDI------SLGFLV-RAK 367
Cdd:COG5635 391 -ERWDEQRGLTIYRELSREELREL--LSELALAMQENGRTEFAREELEeilreylGRRKDAEALldelllRTGLLVeRGE 467
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 1034595528 368 GVVpgstaplEFLHITFQCFFAAFYLA--LSADVPPALLRHLFN 409
Cdd:COG5635 468 GRY-------SFAHRSFQEYLAARALVeeLDEELLELLAEHLED 504
|
|
| NLRC4_HD2 |
pfam17776 |
NLRC4 helical domain HD2; This entry represents a helical domain found in the NLRC4 protein ... |
381-535 |
3.45e-14 |
|
NLRC4 helical domain HD2; This entry represents a helical domain found in the NLRC4 protein and NOD2 protein.
Pssm-ID: 465499 [Multi-domain] Cd Length: 122 Bit Score: 69.63 E-value: 3.45e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595528 381 HITFQCFFAAFYLALSADV-PPALLRHLFNCGRpgnspmarllptmciqaSEGKDSSVAALLQKAEPHnLQITAAFLAGL 459
Cdd:pfam17776 1 HLSFQEFFAALFYVLSFKEeKSNPLKEFFGLRK-----------------RESLKSLLDKALKSKNGH-LDLFLRFLFGL 62
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1034595528 460 LSREHWGLLAECQTSEKALLRRQAcARWCLARSLRKHFHSippaapgeaksvhamPGFIWLIRSLYEMQEERLARK 535
Cdd:pfam17776 63 LNEENQRLLEGLLGCKLSSEIKQE-LLQWIKSLIQKELSS---------------ERFLNLFHCLYELQDESFVKE 122
|
|
| NOD2_WH |
pfam17779 |
NOD2 winged helix domain; This winged helix domain is found in the NOD2 protein. Its molecular ... |
324-379 |
8.13e-08 |
|
NOD2 winged helix domain; This winged helix domain is found in the NOD2 protein. Its molecular function is not known.
Pssm-ID: 465501 Cd Length: 57 Bit Score: 49.49 E-value: 8.13e-08
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 1034595528 324 TLLHLGRLALWGLGMCCYVFSAQQLQAAQVSPDDISLGFLVRAKGVVPGSTAPLEF 379
Cdd:pfam17779 2 LLLKLGKLAFEGLWKKKLVFSEEDLKEYGLDESDLSSGLLTEILQKDLGCEKVYSF 57
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
72-171 |
8.60e-03 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 37.74 E-value: 8.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595528 72 TVLVVGEAGSGKSTLLQRLhllwaAGQDFQEFLFVFPFSCRQLQCMAKPLSVRTLLFEHCCWPDVGQ--EDIFQLLLDHP 149
Cdd:smart00382 4 VILIVGPPGSGKTTLARAL-----ARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELrlRLALALARKLK 78
|
90 100
....*....|....*....|..
gi 1034595528 150 DRVLLtfdgFDEFkFRFTDRER 171
Cdd:smart00382 79 PDVLI----LDEI-TSLLDAEQ 95
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| NACHT |
pfam05729 |
NACHT domain; This NTPase domain is found in apoptosis proteins as well as those involved in ... |
71-241 |
4.05e-44 |
|
NACHT domain; This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.
Pssm-ID: 428606 [Multi-domain] Cd Length: 166 Bit Score: 156.70 E-value: 4.05e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595528 71 DTVLVVGEAGSGKSTLLQRLHLLWAAGQDFQEFLFVFPFSCRQLQCMAKPLSVRTLLFEHCCWPDVGQEDIFQLLLDHPD 150
Cdd:pfam05729 1 RTVILQGEAGSGKTTLLQKLALLWAQGKLPQGFDFVFFLPCRELSRSGNARSLADLLFSQWPEPAAPVSEVWAVILELPE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595528 151 RVLLTFDGFDEFKFRFtdrerhCSPTDPTSVQTLLFNLLQGNLLKNARKVVTSRPAAVSAfLRKYIRTE--FNLKGFSEQ 228
Cdd:pfam05729 81 RLLLILDGLDELVSDL------GQLDGPCPVLTLLSSLLRKKLLPGASLLLTVRPDALRD-LRRGLEEPryLEVRGFSES 153
|
170
....*....|...
gi 1034595528 229 GIELYLRKRHHEP 241
Cdd:pfam05729 154 DRKQYVRKYFSDE 166
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
535-809 |
1.86e-42 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 160.34 E-value: 1.86e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595528 535 KAARGLNVGHLKLTFCSVGPTECAALAFVLQHLRRPVaLQLDYNSVGDIGVEQLLPCLGVCKA---LYLRDNNISDRGIC 611
Cdd:COG5238 148 KDPLGGNAVHLLGLAARLGLLAAISMAKALQNNSVET-VYLGCNQIGDEGIEELAEALTQNTTvttLWLKRNPIGDEGAE 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595528 612 KLIECALHCEQLQKLALFNNKLTDGCAHSMAKLLACRQNFLALRLGNNYITAAGAQVLAEGLRGNTSLQFLGFWGNRVGD 691
Cdd:COG5238 227 ILAEALKGNKSLTTLDLSNNQIGDEGVIALAEALKNNTTVETLYLSGNQIGAEGAIALAKALQGNTTLTSLDLSVNRIGD 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595528 692 EGAQALAEALGDHQSLRWLSLVGNNIGSVGAQALALMLAKNVMLEELCLEENHLQDEGVCSLAEGLKKNSSLKILKLSNN 771
Cdd:COG5238 307 EGAIALAEGLQGNKTLHTLNLAYNGIGAQGAIALAKALQENTTLHSLDLSDNQIGDEGAIALAKYLEGNTTLRELNLGKN 386
|
250 260 270
....*....|....*....|....*....|....*...
gi 1034595528 772 CITYLGAEALLQALERNdTILEVWLRGNTFSLEEVDKL 809
Cdd:COG5238 387 NIGKQGAEALIDALQTN-RLHTLILDGNLIGAEAQQRL 423
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
581-810 |
2.97e-37 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 145.32 E-value: 2.97e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595528 581 GDIGVEQLLPCLGVCKAL--------YLRDNNISDRGICKLIECALHCEQLQKLALFNNKLTDGCAHSMAKLLACRQNFL 652
Cdd:COG5238 160 GLAARLGLLAAISMAKALqnnsvetvYLGCNQIGDEGIEELAEALTQNTTVTTLWLKRNPIGDEGAEILAEALKGNKSLT 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595528 653 ALRLGNNYITAAGAQVLAEGLRGNTSLQFLGFWGNRVGDEGAQALAEALGDHQSLRWLSLVGNNIGSVGAQALALMLAKN 732
Cdd:COG5238 240 TLDLSNNQIGDEGVIALAEALKNNTTVETLYLSGNQIGAEGAIALAKALQGNTTLTSLDLSVNRIGDEGAIALAEGLQGN 319
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1034595528 733 VMLEELCLEENHLQDEGVCSLAEGLKKNSSLKILKLSNNCITYLGAEALLQALERNDTILEVWLRGNTFSLEEVDKLG 810
Cdd:COG5238 320 KTLHTLNLAYNGIGAQGAIALAKALQENTTLHSLDLSDNQIGDEGAIALAKYLEGNTTLRELNLGKNNIGKQGAEALI 397
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
583-810 |
1.88e-33 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 134.15 E-value: 1.88e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595528 583 IGVEQLLPCLGVCKALYLRDNNIS-DRGICKLIECALHCEQLQKLALFNNKLTDGCAHSMAKLLACRQNFLALRLGNNYI 661
Cdd:COG5238 141 INLIQVLKDPLGGNAVHLLGLAARlGLLAAISMAKALQNNSVETVYLGCNQIGDEGIEELAEALTQNTTVTTLWLKRNPI 220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595528 662 TAAGAQVLAEGLRGNTSLQFLGFWGNRVGDEGAQALAEALGDHQSLRWLSLVGNNIGSVGAQALALMLAKNVMLEELCLE 741
Cdd:COG5238 221 GDEGAEILAEALKGNKSLTTLDLSNNQIGDEGVIALAEALKNNTTVETLYLSGNQIGAEGAIALAKALQGNTTLTSLDLS 300
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1034595528 742 ENHLQDEGVCSLAEGLKKNSSLKILKLSNNCITYLGAEALLQALERNDTILEVWLRGNTFSLEEVDKLG 810
Cdd:COG5238 301 VNRIGDEGAIALAEGLQGNKTLHTLNLAYNGIGAQGAIALAKALQENTTLHSLDLSDNQIGDEGAIALA 369
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
545-810 |
3.21e-30 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 122.08 E-value: 3.21e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595528 545 LKLTFCSVGPTECAALAFVLQHLRRPVALQLDYNSVGDI--GVEQLLPCLGVCKAL---YLRDNNISDRGiCKLIECALH 619
Cdd:cd00116 28 LRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIprGLQSLLQGLTKGCGLqelDLSDNALGPDG-CGVLESLLR 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595528 620 CEQLQKLALFNNKLTD-GCAHSMAKLLACRQNFLALRLGNNYITAAGAQVLAEGLRGNTSLQFLGFWGNRVGDEGAQALA 698
Cdd:cd00116 107 SSSLQELKLNNNGLGDrGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALA 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595528 699 EALGDHQSLRWLSLVGNNIGSVGAQALALMLAKNVMLEELCLEENHLQDEGVCSLAEGLKK-NSSLKILKLSNNCITYLG 777
Cdd:cd00116 187 EGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSpNISLLTLSLSCNDITDDG 266
|
250 260 270
....*....|....*....|....*....|...
gi 1034595528 778 AEALLQALERNDTILEVWLRGNTFSLEEVDKLG 810
Cdd:cd00116 267 AKDLAEVLAEKESLLELDLRGNKFGEEGAQLLA 299
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
558-786 |
5.61e-29 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 118.23 E-value: 5.61e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595528 558 AALAFVLQHLRRPVALQ-LDY--NSVGDIGVEQLLPCL--GVCKALYLRDNNISDRGIcKLIECAL--HCEQLQKLALFN 630
Cdd:cd00116 68 RGLQSLLQGLTKGCGLQeLDLsdNALGPDGCGVLESLLrsSSLQELKLNNNGLGDRGL-RLLAKGLkdLPPALEKLVLGR 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595528 631 NKLTDGCAHSMAKLLACRQNFLALRLGNNYITAAGAQVLAEGLRGNTSLQFLGFWGNRVGDEGAQALAEALGDHQSLRWL 710
Cdd:cd00116 147 NRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVL 226
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1034595528 711 SLVGNNIGSVGAQALAL-MLAKNVMLEELCLEENHLQDEGVCSLAEGLKKNSSLKILKLSNNCITYLGAEALLQALE 786
Cdd:cd00116 227 NLGDNNLTDAGAAALASaLLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLL 303
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
573-799 |
7.45e-25 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 106.29 E-value: 7.45e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595528 573 LQLDYNSVGDIGVEQLLPCLGVCKALYLRDNNISDRGiCKLIECALHCEQLQKLALFNNKLTdgcAHSMAKLLACRQNFL 652
Cdd:cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEA-AKALASALRPQPSLKELCLSLNET---GRIPRGLQSLLQGLT 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595528 653 A------LRLGNNYITAAGAQVLaEGLRGNTSLQFLGFWGNRVGDEGAQALAEALGDHQ-SLRWLSLVGNNIGSVGAQAL 725
Cdd:cd00116 79 KgcglqeLDLSDNALGPDGCGVL-ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPpALEKLVLGRNRLEGASCEAL 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1034595528 726 ALMLAKNVMLEELCLEENHLQDEGVCSLAEGLKKNSSLKILKLSNNCITYLGAEALLQALERNDTILEVWLRGN 799
Cdd:cd00116 158 AKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN 231
|
|
| NACHT |
COG5635 |
Predicted NTPase, NACHT family domain [Signal transduction mechanisms]; |
66-409 |
1.40e-21 |
|
Predicted NTPase, NACHT family domain [Signal transduction mechanisms];
Pssm-ID: 444362 [Multi-domain] Cd Length: 935 Bit Score: 100.65 E-value: 1.40e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595528 66 LNDDADTVLVVGEAGSGKSTLLQRL-HLLWAAGQDFQEFLFVFpFSCRQLqcmAKPLSVRTLLFEHCCWPDVGQEDIFQL 144
Cdd:COG5635 176 LEAKKKRLLILGEPGSGKTTLLRYLaLELAERYLDAEDPIPIL-IELRDL---AEEASLEDLLAEALEKRGGEPEDALER 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595528 145 LLDHpDRVLLTFDGFDEFKFRfTDRERhcsptdptsVQTLLFNLLQGnlLKNARKVVTSRPAAV-SAFLRKYirTEFNLK 223
Cdd:COG5635 252 LLRN-GRLLLLLDGLDEVPDE-ADRDE---------VLNQLRRFLER--YPKARVIITSRPEGYdSSELEGF--EVLELA 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595528 224 GFSEQGIELYLRKRH-HEPGVADRLIRLLQETSALHGLCHLPVFSWMVSkchqeLLLQEGGS-PKTTTDMYLLILQHFLl 301
Cdd:COG5635 317 PLSDEQIEEFLKKWFeATERKAERLLEALEENPELRELARNPLLLTLLA-----LLLRERGElPDTRAELYEQFVELLL- 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595528 302 hATPPDSASQGLGPSLLRGRLPTLlhLGRLALWGLGMCCYVFSAQQLQ-------AAQVSPDDI------SLGFLV-RAK 367
Cdd:COG5635 391 -ERWDEQRGLTIYRELSREELREL--LSELALAMQENGRTEFAREELEeilreylGRRKDAEALldelllRTGLLVeRGE 467
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 1034595528 368 GVVpgstaplEFLHITFQCFFAAFYLA--LSADVPPALLRHLFN 409
Cdd:COG5635 468 GRY-------SFAHRSFQEYLAARALVeeLDEELLELLAEHLED 504
|
|
| NLRC4_HD2 |
pfam17776 |
NLRC4 helical domain HD2; This entry represents a helical domain found in the NLRC4 protein ... |
381-535 |
3.45e-14 |
|
NLRC4 helical domain HD2; This entry represents a helical domain found in the NLRC4 protein and NOD2 protein.
Pssm-ID: 465499 [Multi-domain] Cd Length: 122 Bit Score: 69.63 E-value: 3.45e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595528 381 HITFQCFFAAFYLALSADV-PPALLRHLFNCGRpgnspmarllptmciqaSEGKDSSVAALLQKAEPHnLQITAAFLAGL 459
Cdd:pfam17776 1 HLSFQEFFAALFYVLSFKEeKSNPLKEFFGLRK-----------------RESLKSLLDKALKSKNGH-LDLFLRFLFGL 62
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1034595528 460 LSREHWGLLAECQTSEKALLRRQAcARWCLARSLRKHFHSippaapgeaksvhamPGFIWLIRSLYEMQEERLARK 535
Cdd:pfam17776 63 LNEENQRLLEGLLGCKLSSEIKQE-LLQWIKSLIQKELSS---------------ERFLNLFHCLYELQDESFVKE 122
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
596-809 |
1.14e-13 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 73.81 E-value: 1.14e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595528 596 KALYLRDNNISDrgickLIECALHCEQLQKLALFNNKLTDgcahsMAKLLACRQNFLALRLGNNYITaagaqVLAEGLRG 675
Cdd:COG4886 116 ESLDLSGNQLTD-----LPEELANLTNLKELDLSNNQLTD-----LPEPLGNLTNLKSLDLSNNQLT-----DLPEELGN 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595528 676 NTSLQFLGFWGNRVGDegaqaLAEALGDHQSLRWLSLVGNNIGSVGAQalalmLAKNVMLEELCLEENHLQDegvcslAE 755
Cdd:COG4886 181 LTNLKELDLSNNQITD-----LPEPLGNLTNLEELDLSGNQLTDLPEP-----LANLTNLETLDLSNNQLTD------LP 244
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1034595528 756 GLKKNSSLKILKLSNNCITYLGAEALLQALErndtilEVWLRGNTFSLEEVDKL 809
Cdd:COG4886 245 ELGNLTNLEELDLSNNQLTDLPPLANLTNLK------TLDLSNNQLTDLKLKEL 292
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
619-802 |
1.54e-13 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 73.43 E-value: 1.54e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595528 619 HCEQLQKLALFNNKLTDgcahsMAKLLACRQNFLALRLGNNYITAagaqvLAEGLRGNTSLQFLGFWGNRVGDegaqaLA 698
Cdd:COG4886 111 NLTNLESLDLSGNQLTD-----LPEELANLTNLKELDLSNNQLTD-----LPEPLGNLTNLKSLDLSNNQLTD-----LP 175
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595528 699 EALGDHQSLRWLSLVGNNIGSvgaqaLALMLAKNVMLEELCLEENHLQDegvcsLAEGLKKNSSLKILKLSNNCITYLGA 778
Cdd:COG4886 176 EELGNLTNLKELDLSNNQITD-----LPEPLGNLTNLEELDLSGNQLTD-----LPEPLANLTNLETLDLSNNQLTDLPE 245
|
170 180
....*....|....*....|....
gi 1034595528 779 EALLQALErndtilEVWLRGNTFS 802
Cdd:COG4886 246 LGNLTNLE------ELDLSNNQLT 263
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
541-701 |
2.38e-11 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 66.74 E-value: 2.38e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595528 541 NVGHLKLTFCSVGPTECAALAFVLQHLRRPVALQLDYNSVGDIGVEQLLPCLGVCKA---LYLRDNNISDRGICKLIECA 617
Cdd:COG5238 265 TVETLYLSGNQIGAEGAIALAKALQGNTTLTSLDLSVNRIGDEGAIALAEGLQGNKTlhtLNLAYNGIGAQGAIALAKAL 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595528 618 LHCEQLQKLALFNNKLTDGCAHSMAKLLACRQNFLALRLGNNYITAAGAQVLAEGLRGNTsLQFLGFWGNRVGDEGAQAL 697
Cdd:COG5238 345 QENTTLHSLDLSDNQIGDEGAIALAKYLEGNTTLRELNLGKNNIGKQGAEALIDALQTNR-LHTLILDGNLIGAEAQQRL 423
|
....
gi 1034595528 698 AEAL 701
Cdd:COG5238 424 EQLL 427
|
|
| NOD2_WH |
pfam17779 |
NOD2 winged helix domain; This winged helix domain is found in the NOD2 protein. Its molecular ... |
324-379 |
8.13e-08 |
|
NOD2 winged helix domain; This winged helix domain is found in the NOD2 protein. Its molecular function is not known.
Pssm-ID: 465501 Cd Length: 57 Bit Score: 49.49 E-value: 8.13e-08
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 1034595528 324 TLLHLGRLALWGLGMCCYVFSAQQLQAAQVSPDDISLGFLVRAKGVVPGSTAPLEF 379
Cdd:pfam17779 2 LLLKLGKLAFEGLWKKKLVFSEEDLKEYGLDESDLSSGLLTEILQKDLGCEKVYSF 57
|
|
| PPP1R42 |
cd21340 |
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ... |
589-774 |
1.02e-06 |
|
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.
Pssm-ID: 411060 [Multi-domain] Cd Length: 220 Bit Score: 50.55 E-value: 1.02e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595528 589 LPCLGVCKA---LYLRDNNISdrgickLIECALHCEQLQKLALFNNKLTdgcahsmaKLlacrQNFLALR------LGNN 659
Cdd:cd21340 17 IDNLSLCKNlkvLYLYDNKIT------KIENLEFLTNLTHLYLQNNQIE--------KI----ENLENLVnlkklyLGGN 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595528 660 YITaagaqVLaEGLRGNTSLQFLgfwgnrvgDEGAQALAE------------ALGDhqSLRWLSLVGNNIGSVgaQALAL 727
Cdd:cd21340 79 RIS-----VV-EGLENLTNLEEL--------HIENQRLPPgekltfdprslaALSN--SLRVLNISGNNIDSL--EPLAP 140
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1034595528 728 MlaKNvmLEELCLEENHLQD-EGVCSLaegLKKNSSLKILKLSNNCIT 774
Cdd:cd21340 141 L--RN--LEQLDASNNQISDlEELLDL---LSSWPSLRELDLTGNPVC 181
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
564-796 |
2.45e-06 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 50.70 E-value: 2.45e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595528 564 LQHLRRpvaLQLDYNSVGDIGVE-QLLPCLgvcKALYLRDNNISD--RGICKLiecalhcEQLQKLALFNNKLTDgcahs 640
Cdd:COG4886 135 LTNLKE---LDLSNNQLTDLPEPlGNLTNL---KSLDLSNNQLTDlpEELGNL-------TNLKELDLSNNQITD----- 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595528 641 MAKLLACRQNFLALRLGNNYITAagaqvLAEGLRGNTSLQFLGFWGNRVGD----EGAQALAE------------ALGDH 704
Cdd:COG4886 197 LPEPLGNLTNLEELDLSGNQLTD-----LPEPLANLTNLETLDLSNNQLTDlpelGNLTNLEEldlsnnqltdlpPLANL 271
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595528 705 QSLRWLSLVGNNIGSVGAQALA--LMLAKNVMLEELCLEENHLQDEGVCSLAEGLKKNSSLKILKLSNNCITYLGAEALL 782
Cdd:COG4886 272 TNLKTLDLSNNQLTDLKLKELEllLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLT 351
|
250
....*....|....
gi 1034595528 783 QALERNDTILEVWL 796
Cdd:COG4886 352 LLLLLNLLSLLLTL 365
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
564-797 |
1.37e-05 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 48.39 E-value: 1.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595528 564 LQHLRRpvaLQLDYNSVGDIGVEqllpcLGVCKAL---YLRDNNISDrgicklIECAL-HCEQLQKLALFNNKLTDgcah 639
Cdd:COG4886 181 LTNLKE---LDLSNNQITDLPEP-----LGNLTNLeelDLSGNQLTD------LPEPLaNLTNLETLDLSNNQLTD---- 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595528 640 smAKLLACRQNFLALRLGNNYITAAGAqvlaegLRGNTSLQFLGFWGNRVGDEGAQALAEALGDHQSLRWLSLVGNNIGS 719
Cdd:COG4886 243 --LPELGNLTNLEELDLSNNQLTDLPP------LANLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLELL 314
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1034595528 720 VGAQALALMLAKNVMLEELCLEENHLQDEGVCSLAEGLKKNSSLKILKLSNNCITYLGAEALLQALERNDTILEVWLR 797
Cdd:COG4886 315 ILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLLTLLLTLGLLGLLEATLLTLALLLLTLLLL 392
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
530-650 |
1.99e-03 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 41.19 E-value: 1.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595528 530 ERLARKAARGL----NVGHLKLTFCSVGPTECAALAFVLQHLRRPVALQLDYNSVGDIGV----EQLLPCLGVCKALYLR 601
Cdd:cd00116 179 DAGIRALAEGLkancNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAaalaSALLSPNISLLTLSLS 258
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 1034595528 602 DNNISDRGICKLIECALHCEQLQKLALFNNKLTDGCAHSMAKLLACRQN 650
Cdd:cd00116 259 CNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGN 307
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
72-171 |
8.60e-03 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 37.74 E-value: 8.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595528 72 TVLVVGEAGSGKSTLLQRLhllwaAGQDFQEFLFVFPFSCRQLQCMAKPLSVRTLLFEHCCWPDVGQ--EDIFQLLLDHP 149
Cdd:smart00382 4 VILIVGPPGSGKTTLARAL-----ARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELrlRLALALARKLK 78
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90 100
....*....|....*....|..
gi 1034595528 150 DRVLLtfdgFDEFkFRFTDRER 171
Cdd:smart00382 79 PDVLI----LDEI-TSLLDAEQ 95
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