NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1034591847|ref|XP_016878060|]
View 

KATNB1-like protein 1 isoform X1 [Homo sapiens]

Protein Classification

Katanin_con80 domain-containing protein( domain architecture ID 10621878)

Katanin_con80 domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
Katanin_con80 pfam13925
con80 domain of Katanin; The con80 domain of katanin is the C-terminal region of the protein ...
149-300 6.01e-50

con80 domain of Katanin; The con80 domain of katanin is the C-terminal region of the protein that binds to the N-terminal domain of katanin-p60, the catalytic ATPase. The complex associates with a specific subregion of the mitotic spindle leading to increased microtubule disassembly and targeting of p60 to the spindle poles. The assembly and function of the mitotic spindle requires the activity of a number of microtubule-binding proteins. Katanin, a heterodimeric microtubule-severing ATPase, is found localized at mitotic spindle poles. A proposed model is that katanin is targeted to spindle poles through a combination of direct microtubule binding by the p60 subunit and through interactions between the WD40 domain and an unknown protein.


:

Pssm-ID: 464044  Cd Length: 160  Bit Score: 162.78  E-value: 6.01e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034591847 149 QDHETMAQVLFSRNMRLNVALTFWRKRSISELVAYLLRIEDLGVVVDCLPVLtnclQEEKQYISLGCCVDLLPLVKSLLK 228
Cdd:pfam13925   1 KDHDTMLSVLQSRLLKLQVVRTLWRRNDIKGAIEAAVRMQDPSVLVDVLSVL----QLKPELITLDLCVDLLPLLKELLK 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034591847 229 SKFEEYVIVGLNWLQAVIKRWWSELSS-KTEIINDGNIQILKQQ-----------LSGLWEQENHLTLVPGYTGNIAKDV 296
Cdd:pfam13925  77 SKYERYIIVGLDFLRLILKNFGPVIKSaLSAPPSSVGVDLSREErlekcnecfkeLQKIRQILKKLARRSGKLGELAREL 156

                  ....
gi 1034591847 297 DAYL 300
Cdd:pfam13925 157 NLLL 160
 
Name Accession Description Interval E-value
Katanin_con80 pfam13925
con80 domain of Katanin; The con80 domain of katanin is the C-terminal region of the protein ...
149-300 6.01e-50

con80 domain of Katanin; The con80 domain of katanin is the C-terminal region of the protein that binds to the N-terminal domain of katanin-p60, the catalytic ATPase. The complex associates with a specific subregion of the mitotic spindle leading to increased microtubule disassembly and targeting of p60 to the spindle poles. The assembly and function of the mitotic spindle requires the activity of a number of microtubule-binding proteins. Katanin, a heterodimeric microtubule-severing ATPase, is found localized at mitotic spindle poles. A proposed model is that katanin is targeted to spindle poles through a combination of direct microtubule binding by the p60 subunit and through interactions between the WD40 domain and an unknown protein.


Pssm-ID: 464044  Cd Length: 160  Bit Score: 162.78  E-value: 6.01e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034591847 149 QDHETMAQVLFSRNMRLNVALTFWRKRSISELVAYLLRIEDLGVVVDCLPVLtnclQEEKQYISLGCCVDLLPLVKSLLK 228
Cdd:pfam13925   1 KDHDTMLSVLQSRLLKLQVVRTLWRRNDIKGAIEAAVRMQDPSVLVDVLSVL----QLKPELITLDLCVDLLPLLKELLK 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034591847 229 SKFEEYVIVGLNWLQAVIKRWWSELSS-KTEIINDGNIQILKQQ-----------LSGLWEQENHLTLVPGYTGNIAKDV 296
Cdd:pfam13925  77 SKYERYIIVGLDFLRLILKNFGPVIKSaLSAPPSSVGVDLSREErlekcnecfkeLQKIRQILKKLARRSGKLGELAREL 156

                  ....
gi 1034591847 297 DAYL 300
Cdd:pfam13925 157 NLLL 160
 
Name Accession Description Interval E-value
Katanin_con80 pfam13925
con80 domain of Katanin; The con80 domain of katanin is the C-terminal region of the protein ...
149-300 6.01e-50

con80 domain of Katanin; The con80 domain of katanin is the C-terminal region of the protein that binds to the N-terminal domain of katanin-p60, the catalytic ATPase. The complex associates with a specific subregion of the mitotic spindle leading to increased microtubule disassembly and targeting of p60 to the spindle poles. The assembly and function of the mitotic spindle requires the activity of a number of microtubule-binding proteins. Katanin, a heterodimeric microtubule-severing ATPase, is found localized at mitotic spindle poles. A proposed model is that katanin is targeted to spindle poles through a combination of direct microtubule binding by the p60 subunit and through interactions between the WD40 domain and an unknown protein.


Pssm-ID: 464044  Cd Length: 160  Bit Score: 162.78  E-value: 6.01e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034591847 149 QDHETMAQVLFSRNMRLNVALTFWRKRSISELVAYLLRIEDLGVVVDCLPVLtnclQEEKQYISLGCCVDLLPLVKSLLK 228
Cdd:pfam13925   1 KDHDTMLSVLQSRLLKLQVVRTLWRRNDIKGAIEAAVRMQDPSVLVDVLSVL----QLKPELITLDLCVDLLPLLKELLK 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034591847 229 SKFEEYVIVGLNWLQAVIKRWWSELSS-KTEIINDGNIQILKQQ-----------LSGLWEQENHLTLVPGYTGNIAKDV 296
Cdd:pfam13925  77 SKYERYIIVGLDFLRLILKNFGPVIKSaLSAPPSSVGVDLSREErlekcnecfkeLQKIRQILKKLARRSGKLGELAREL 156

                  ....
gi 1034591847 297 DAYL 300
Cdd:pfam13925 157 NLLL 160
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH