NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1034566336|ref|XP_016871128|]
View 

protein FAM24A isoform X1 [Homo sapiens]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
FAM24 super family cl21058
FAM24 family; This family of proteins is found in eukaryotes. Proteins in this family are ...
 33-105 9.70e-15

FAM24 family; This family of proteins is found in eukaryotes. Proteins in this family are typically between 87 and 101 amino acids in length. There are two conserved sequence motifs: FDLRT and CLY. The function of this family is unknown.


The actual alignment was detected with superfamily member pfam15193:

Pssm-ID: 464556  Cd Length: 69  Bit Score: 63.24  E-value: 9.70e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1034566336  33 LYFKVAKALKAAKDPDAVAVKNHNP-DKVcwatnSQAKATTMESCPSLQCCEGCRMHASSDSLPPCCCDINEGL 105
Cdd:pfam15193   1 LYFKISKALKAAKEPDPCADPCKNTqDKV-----IRAKTIAAESCRTLQCCDECSMYADYDPLPPCFCDTNEGL 69
 
Name Accession Description Interval E-value
FAM24 pfam15193
FAM24 family; This family of proteins is found in eukaryotes. Proteins in this family are ...
 33-105 9.70e-15

FAM24 family; This family of proteins is found in eukaryotes. Proteins in this family are typically between 87 and 101 amino acids in length. There are two conserved sequence motifs: FDLRT and CLY. The function of this family is unknown.


Pssm-ID: 464556  Cd Length: 69  Bit Score: 63.24  E-value: 9.70e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1034566336  33 LYFKVAKALKAAKDPDAVAVKNHNP-DKVcwatnSQAKATTMESCPSLQCCEGCRMHASSDSLPPCCCDINEGL 105
Cdd:pfam15193   1 LYFKISKALKAAKEPDPCADPCKNTqDKV-----IRAKTIAAESCRTLQCCDECSMYADYDPLPPCFCDTNEGL 69
 
Name Accession Description Interval E-value
FAM24 pfam15193
FAM24 family; This family of proteins is found in eukaryotes. Proteins in this family are ...
 33-105 9.70e-15

FAM24 family; This family of proteins is found in eukaryotes. Proteins in this family are typically between 87 and 101 amino acids in length. There are two conserved sequence motifs: FDLRT and CLY. The function of this family is unknown.


Pssm-ID: 464556  Cd Length: 69  Bit Score: 63.24  E-value: 9.70e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1034566336  33 LYFKVAKALKAAKDPDAVAVKNHNP-DKVcwatnSQAKATTMESCPSLQCCEGCRMHASSDSLPPCCCDINEGL 105
Cdd:pfam15193   1 LYFKISKALKAAKEPDPCADPCKNTqDKV-----IRAKTIAAESCRTLQCCDECSMYADYDPLPPCFCDTNEGL 69
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH